Citrus Sinensis ID: 006197

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------
Protein Sequence
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHccccEEEEccHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHcccEEEEHHHHHHccccccccccccccccEEEEEEcccccccccHHHHcHHHHHHHHHHHHHHccccccccccccEEEEEcHHHHHHHHHHHHHHHHHccEEEEccccHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEccccccHHcccccccccccccccccccccEEEEcccccEEEEccccHHHHcccccEEccHHHHHHHHccccccEEEEEEEccccEEEEEEEccHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHccccccccEEEccccccccEEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccEEEEEccccccHHHHHHHEccccEEEEEEccHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHccccccHccEEEEHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccEEEEccccHHHHHHHHHcccccccccccEccccEEEEEEccccEEEEccccEEccHHHHHEEEccccccEEEEEccccccEEEEEEcccHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHccccccHEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MKIFAAQVeegkegkdgkpsvgpvyrnllasngfpsvdsdlntaWDIFSMSVQkypgnrmlgwrpfvdgkfgpyVWKTYKEVYEEVLQIVSALRAsgaepgcrvgiygancPQWVEAMEACNALSLICvplydtlgpgavnfILDHAEIDFVFVQDKKVkellspdcrsaqRLRVMVCFTSLTAEQKEMAVqtgikpyswdeflhlgkvnemeilppqpfnictimytsgtsgdpkgvvLTHETIATFVSGVDLFLDQfedkmtvddvylSFLPLAHILDRVIEEYFFRRGasvgyyhgdLNALRDDLMELKptllagvpRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMgykqreasplADLLAFRKVKARLGGRLRlvisggaplstEVEEFLRVTCCAFLVqgygltetcgpttvcfpdemcmvgtagpvsvyselrleevpemgysplddppcgevcvrgktlfsgyyknpdltresiidgwfhtgdigqilpngVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPceedtkkwaysnghagSFLELCSLVQLQNYILSELKNAAERNKlrgfehikgvildprpfdmERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Flexible Loop (DISEMBL)
MKIFAAqveegkegkdgkpsvGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEllspdcrsaqrlRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKaleelrplRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEmgysplddppcgEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERnklrgfehikgvildprpfdMERDLVTATLKKKRNKLLIYYQVEIdqlyeklapgrr
Low Complexity Region (SEG)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Disordered region (IsUnstruct)
***********************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE*******
Disordered Region (DISOPRED)
*KIFAAQ****************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL**********PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL**K******
Disordered Region (DISEMBL)
*****************KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Disordered Region (DISPRO)
*KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	657	2.2.26 [Sep-21-2011]
O22898	660	Long chain acyl-CoA synth	yes	no	0.993	0.989	0.690	0.0
Q9T0A0	666	Long chain acyl-CoA synth	no	no	0.990	0.977	0.507	0.0
Q9T009	666	Long chain acyl-CoA synth	no	no	0.996	0.983	0.501	0.0
Q9C7W4	665	Long chain acyl-CoA synth	no	no	0.986	0.974	0.506	0.0
Q9XIA9	665	Long chain acyl-CoA synth	no	no	0.980	0.968	0.468	1e-173
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.920	0.863	0.405	1e-117
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.919	0.862	0.387	1e-115
Q1ZXQ4	673	Fatty acyl-CoA synthetase	yes	no	0.971	0.947	0.350	1e-112
Q55DR6	667	Fatty acyl-CoA synthetase	no	no	0.917	0.904	0.373	1e-109
Q9ULC5	683	Long-chain-fatty-acid--Co	yes	no	0.910	0.875	0.362	1e-106

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/656 (69%), Positives = 546/656 (83%), Gaps = 3/656 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1   MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct: 61  LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct: 241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGY 357
           LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+AL   KLAW+N GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query: 358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 417
              +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query: 418 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 477
            G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query: 478 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 537
           KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query: 538 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 597
           +++DIWVYGDS KSMLVAVVVP  E   +WA   G    F ELCS  +L+ +I+SELK+ 
Sbjct: 541 VVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKST 600

Query: 598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 653
           AE+NKLR FE+IK V ++ +PFD+ERDLVTATLK +RN LL YYQV+ID++Y KLA
Sbjct: 601 AEKNKLRKFEYIKAVTVETKPFDVERDLVTATLKNRRNNLLKYYQVQIDEMYRKLA 656

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/654 (50%), Positives = 457/654 (69%), Gaps = 3/654 (0%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct: 5   KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD---ALKLAWMNMGYK 358
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD   + K  +M  G  
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query: 359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 418
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 419 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 478
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query: 479 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 538
             DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query: 539 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 598
           ++ +WVYG+S +S L+A+  P +   ++WA  NG +G +  LC   + + +IL EL   A
Sbjct: 545 VDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMA 604

Query: 599 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 652
           +  K++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  ID++Y+ +
Sbjct: 605 KEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKTI 658

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/662 (50%), Positives = 446/662 (67%), Gaps = 7/662 (1%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct: 5   KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct: 65  GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct: 245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD---ALKLAWMNMGYK 358
             L +DL ELKP++   VPRV ++++ G+++ L      ++++FD   + K   M  G  
Sbjct: 305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query: 359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 418
              ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query: 419 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 478
             T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query: 479 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 538
             DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E LENVY    +
Sbjct: 485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544

Query: 539 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 598
           IE IWVYG+S +S LVA+  P ++  ++WA  NG  G F  +C   + + +IL EL   A
Sbjct: 545 IESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAKAFILGELVKTA 604

Query: 599 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY----EKLAP 654
           + NKL+GFE IK V L+P  FDMERDL+T T KKKR +LL YYQ  I ++Y    E LA 
Sbjct: 605 KENKLKGFEIIKDVHLEPVAFDMERDLLTPTYKKKRPQLLKYYQNVIHEMYKTTKESLAS 664

Query: 655 GR 656
           G+
Sbjct: 665 GQ 666

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/652 (50%), Positives = 448/652 (68%), Gaps = 4/652 (0%)

Query: 4   FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
           +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct: 6   YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query: 63  WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
            R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct: 66  RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query: 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
           A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
           T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query: 243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
           E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD-ALKLAWMNM--GYKQ 359
            L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+ A K    NM  G   
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query: 360 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 419
            +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query: 420 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 479
            T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query: 480 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 539
            DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y     I
Sbjct: 486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545

Query: 540 EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE 599
           E IWVYG+S +S LVAVV P +   + WA  +  +G F  +C   + + ++L E    A+
Sbjct: 546 ESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKTKEFVLGEFNRVAK 605

Query: 600 RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 651
             KL+GFE IKGV LD  PFDMERDL+T + K KR +LL YYQ EID++Y+K
Sbjct: 606 DKKLKGFELIKGVHLDTVPFDMERDLITPSYKMKRPQLLKYYQKEIDEMYKK 657

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1

 Score =  609 bits (1571), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 304/649 (46%), Positives = 418/649 (64%), Gaps = 5/649 (0%)

Query: 8   VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
           VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct: 11  VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
           D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct: 71  DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
            VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
            V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD---ALKLAWMNMGYKQREASP 364
           +  LKPT+  GVPRV++K++ GI + +     +R+++FD     KL  M  G+ Q EASP
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query: 365 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 424
             D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query: 425 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 483
                 MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query: 484 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 543
            + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+E LEN Y   P+I  IW
Sbjct: 491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQIW 550

Query: 544 VYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNK 602
           VYG+S +S LV VVVP  +  + WA  N  +   F  LC  ++ Q Y L EL + A++ +
Sbjct: 551 VYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAKQYQ 610

Query: 603 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 651
           L+GFE +K + L+P PFD+ERDL+T T K KR +LL +Y+  +DQLY +
Sbjct: 611 LKGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLQHYKGIVDQLYSE 659

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  422 bits (1084), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 251/619 (40%), Positives = 344/619 (55%), Gaps = 14/619 (2%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L   G  
Sbjct: 82  DIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIP 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F   + +
Sbjct: 142 MGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT-GIKPYSWDEFLHLGKVNEMEILPPQ 218
             LLS  C S      +V       E       + G+K  S+   L+ G+ N     PP+
Sbjct: 202 NSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPK 259

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+LPLAHI
Sbjct: 260 PDDVATICYTSGTTGTPKGVVLTHANLIANVAGS-----SFSVKFFSSDVYISYLPLAHI 314

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
            +R  +      G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ GI  A++   
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374

Query: 339 PLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE 398
            L+ R+F+A   A        + ASP+ D L F K+K RLGGR+R + SG +PLS EV E
Sbjct: 375 GLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVME 434

Query: 399 FLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPVSVYSELRLEEVPEMGYSPL 457
           FL+V     + +GYG+TET     +   DE   + G  G  +   E++L +VPEM Y+  
Sbjct: 435 FLKVCFGGRVTEGYGMTETS--CVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSA 492

Query: 458 DDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNL 515
           D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP G +KIIDRKKN+
Sbjct: 493 DQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNI 552

Query: 516 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG-HA 574
            K++QGEY+A E +ENVY     +   ++YGDS  S LVAVV    +  K WA S G   
Sbjct: 553 FKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEGIKG 612

Query: 575 GSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKR 634
           G   ELC+  +++  +LS++       +LRGFE  K V L   PF +E  L+T T K KR
Sbjct: 613 GDLRELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLENGLLTPTFKIKR 672

Query: 635 NKLLIYYQVEIDQLYEKLA 653
            +   Y+   I  +Y++L 
Sbjct: 673 PQAKEYFAEAITNMYKELG 691

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  416 bits (1069), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/620 (38%), Positives = 346/620 (55%), Gaps = 16/620 (2%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L   G  
Sbjct: 82  EIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVN 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F   + +
Sbjct: 142 QGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQP 219
             LLS        +R++V           +   TG+   S+ + L  G+ +     PP+P
Sbjct: 202 NILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKP 260

Query: 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +I TI YTSGT+G PKGVVLTH  +   V+G  +     E +    DVY+S+LPLAHI 
Sbjct: 261 EDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSV-----EAEFFPSDVYISYLPLAHIY 315

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A++    
Sbjct: 316 ERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGV 375

Query: 340 LRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 399
           +++R+F+    +        R  S   D L F K+K +LGGR+R + SG +PLS +V +F
Sbjct: 376 VKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDVMDF 435

Query: 400 LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD 459
           LR+     + +GYG+TET    +    D   + G  G  +   E++L +VPEM Y+  D 
Sbjct: 436 LRICFGCSVREGYGMTETSCVIS-AMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTSDDQ 494

Query: 460 P-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 517
           P P GE+CVRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +KIIDRKKN+ K
Sbjct: 495 PYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFK 554

Query: 518 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG----H 573
           ++QGEY+A E +ENVY     +   +++GDS  S LVA+V    E  K WA S G    H
Sbjct: 555 LAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAASEGIKYEH 614

Query: 574 AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKK 633
            G   +LC+  +++  +L+E+ +     +LRGFE  K V L P PF +E  L+T T K K
Sbjct: 615 LG---QLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLLTPTFKIK 671

Query: 634 RNKLLIYYQVEIDQLYEKLA 653
           R +   Y+   I ++Y ++A
Sbjct: 672 RPQAKAYFAEAISKMYAEIA 691

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/657 (35%), Positives = 367/657 (55%), Gaps = 19/657 (2%)

Query: 4   FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
           +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct: 27  YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query: 62  GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct: 83  GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
               S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct: 143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           S+  E   +A + G+  Y++DE +  GK    + +  PP P  + TIMYTSGT+G PKGV
Sbjct: 202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct: 262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA---LKLAWMNM 355
           GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+    LK   +  
Sbjct: 317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query: 356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 415
           G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct: 377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query: 416 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 475
           E CG       D+   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ SG
Sbjct: 437 EGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSG 495

Query: 476 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 535
           YYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYVA+E +E +   
Sbjct: 496 YYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIVVK 555

Query: 536 APIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 595
           +  +E + +YGDS KS ++A++ P  E   +WA S        E+C        +L ++ 
Sbjct: 556 SEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQDFIKVVLDDII 615

Query: 596 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 652
              +++ L GFE  K + L P  F  + +L+T + K KR+++  Y++ EI +LY KL
Sbjct: 616 KNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFEDEIKKLYSKL 672

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  396 bits (1018), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/621 (37%), Positives = 347/621 (55%), Gaps = 18/621 (2%)

Query: 36  SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
           S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct: 48  SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154
             G   G R+GI+  N P+WV +  A    SL+ V LY TLG  A+ ++++H+EI  +  
Sbjct: 106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLC 165

Query: 155 QDKKVKELLSPDCRSAQRLRVMVCFTSL-TAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
           + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  +
Sbjct: 166 EGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQ 222

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
              P P ++CT++YTSG++G+PKGV+LTH  + + V+G +         +  +DV++S+L
Sbjct: 223 HEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFS----PAGVIPEDVHMSYL 278

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ +   
Sbjct: 279 PLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFT 338

Query: 334 LEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 393
           +     L++ +F+   L       +    +P+ D L F K K RLGGR++ ++SG APL 
Sbjct: 339 VNNDSWLKKFLFN-WGLNSKQSALRLGSTTPIWDKLVFSKTKDRLGGRVKFILSGSAPLD 397

Query: 394 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 453
            ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +VPEM 
Sbjct: 398 PKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLIDVPEMN 456

Query: 454 YSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDR 511
           Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG + IIDR
Sbjct: 457 YFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSIIDR 516

Query: 512 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKW---A 568
           KKN+ K+SQGEYVA EYLE+V+  +P    ++VYGDSL S LV VVVP  E  +K     
Sbjct: 517 KKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASK 576

Query: 569 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA 628
           Y      +   L    +L   ILS     A   KL GFE +K + ++  PF  E +L+T 
Sbjct: 577 YPELDVSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNLLTP 636

Query: 629 TLKKKRNKLLIYYQVEIDQLY 649
           + K KR +L   YQ  ID LY
Sbjct: 637 SFKPKRPQLKERYQTIIDTLY 657

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1

 Score =  387 bits (995), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/626 (36%), Positives = 358/626 (57%), Gaps = 28/626 (4%)

Query: 39  SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG- 97
           SD  T +++F   +        LG+R        PY W +YK+V +    + S L   G 
Sbjct: 72  SDAKTMYEVFQRGLAVSDNGPCLGYRK----PNQPYRWLSYKQVSDRAEYLGSCLLHKGY 127

Query: 98  -AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
            + P   VGI+  N P+W+ +  AC   S++ VPLYDTLGP A+  I++ A+I  V    
Sbjct: 128 KSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVICDT 187

Query: 157 KKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI 214
            +   +L  +        L+V++       + K+   ++GI+  S  +  +LGK +  + 
Sbjct: 188 PQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQRGEKSGIEILSLYDAENLGKEHFRKP 247

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272
           +PP P ++  I +TSGT+GDPKG ++TH+ I   VS    FL   E     T DDV +S+
Sbjct: 248 VPPSPEDLSVICFTSGTTGDPKGAMITHQNI---VSNAAAFLKCVEHAYEPTPDDVAISY 304

Query: 273 LPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332
           LPLAH+ +R+++   +  GA VG++ GD+  L DD+  LKPTL   VPR+  +I++ ++ 
Sbjct: 305 LPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKTLKPTLFPAVPRLLNRIYDKVQN 364

Query: 333 ALEELRPLRRRIFDALKLAWMNMGYKQREASPLA-----DLLAFRKVKARLGGRLRLVIS 387
             E   PL++ +   LKLA ++  +K+ +   +      D L F K++  LGGR+R++++
Sbjct: 365 --EAKTPLKKFL---LKLA-VSSKFKELQKGIIRHDSFWDKLIFAKIQDSLGGRVRVIVT 418

Query: 388 GGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLE 447
           G AP+ST V  F R      + + YG TE  G  T   P +        P++  + ++LE
Sbjct: 419 GAAPMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDWTSGHVGVPLAC-NYVKLE 477

Query: 448 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV 506
           +V +M Y  +++   GEVC++G  +F GY K+P+ T+E++  DGW HTGDIG+ LPNG +
Sbjct: 478 DVADMNYFTVNNE--GEVCIKGTNVFKGYLKDPEKTQEALDSDGWLHTGDIGRWLPNGTL 535

Query: 507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKK 566
           KIIDRKKN+ K++QGEY+A E +EN+Y  +  +  I+V+G+SL+S LV VVVP  +    
Sbjct: 536 KIIDRKKNIFKLAQGEYIAPEKIENIYNRSQPVLQIFVHGESLRSSLVGVVVPDTDVLPS 595

Query: 567 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLV 626
           +A   G  GSF ELC    ++  IL +L+   + + L+ FE +K + L P PF +E  L+
Sbjct: 596 FAAKLGVKGSFEELCQNQVVREAILEDLQKIGKESGLKTFEQVKAIFLHPEPFSIENGLL 655

Query: 627 TATLKKKRNKLLIYYQVEIDQLYEKL 652
           T TLK KR +L  Y++ +ID LYE +
Sbjct: 656 TPTLKAKRGELSKYFRTQIDSLYEHI 681

Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	657
255548375	660	long-chain-fatty-acid CoA ligase, putati	0.998	0.993	0.789	0.0
224068616	665	predicted protein [Populus trichocarpa]	0.998	0.986	0.777	0.0
225437622	662	PREDICTED: long chain acyl-CoA synthetas	1.0	0.992	0.765	0.0
356505647	662	PREDICTED: long chain acyl-CoA synthetas	0.993	0.986	0.765	0.0
356572815	662	PREDICTED: long chain acyl-CoA synthetas	0.992	0.984	0.761	0.0
357511417	668	Annotation was added to scaffolds in Nov	0.990	0.974	0.737	0.0
356534712	660	PREDICTED: long chain acyl-CoA synthetas	0.993	0.989	0.751	0.0
356499773	660	PREDICTED: long chain acyl-CoA synthetas	0.992	0.987	0.755	0.0
449518374	660	PREDICTED: long chain acyl-CoA synthetas	0.992	0.987	0.736	0.0
357442179	686	Annotation was added to scaffolds in Nov	0.990	0.948	0.710	0.0

>gi|255548375|ref|XP_002515244.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223545724|gb|EEF47228.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis]

 Score = 1089 bits (2817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/659 (78%), Positives = 581/659 (88%), Gaps = 3/659 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK+FA +VEEG+EGKDG PSVGPVYRN+L+ N FP+ D D++TAWD+FS+SV+KYP N+M
Sbjct: 1   MKVFAVEVEEGREGKDGNPSVGPVYRNVLSKNEFPAPDCDMDTAWDLFSVSVKKYPENKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV+GK GPYVWKTYKEVYEEVLQI SALRASGAEPGCRVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRKFVNGKVGPYVWKTYKEVYEEVLQIGSALRASGAEPGCRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SL+CVPLYDTLGP AVNFI+DHAEIDF FVQDKKVKELL+PDC SA RL+ +VCFT
Sbjct: 121 CSAHSLVCVPLYDTLGPNAVNFIVDHAEIDFAFVQDKKVKELLNPDCGSASRLKTVVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q  IKPYSW+EFL LGK N  E  PP PF+ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAEQIQIKPYSWEEFLRLGKENPSETSPPHPFSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + +F+  VDLF++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFFR+GA+VGYYHGD
Sbjct: 241 THEAVMSFLRSVDLFMEQFEDKMTVDDVYLSFLPLAHILDRMIEEYFFRKGAAVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGY 357
           LNAL+DDLMELKPT LAGVPRVFEKIHEGIKKALEEL P+RRRIFDAL   KL WMN+GY
Sbjct: 301 LNALKDDLMELKPTFLAGVPRVFEKIHEGIKKALEELNPVRRRIFDALYKYKLYWMNLGY 360

Query: 358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 417
           KQ+ ASPLADLLAFRKVKA+LGGRLRL+ISG APLSTEVEEFLRVTCCAF+VQGYGLTET
Sbjct: 361 KQKYASPLADLLAFRKVKAKLGGRLRLIISGAAPLSTEVEEFLRVTCCAFVVQGYGLTET 420

Query: 418 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 477
           CGP T+ FPDEMCM+G  G V V +ELRLEEVPEMGY+PL +PP GE+CVRGKTLFSGYY
Sbjct: 421 CGPVTIGFPDEMCMMGAVGAVCVCNELRLEEVPEMGYNPLGNPPRGEICVRGKTLFSGYY 480

Query: 478 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 537
           KNP+LTRE + DGWFHTGDIG+I PNGVVKIIDRKK+LIK+SQGEY+ALEYLENVY + P
Sbjct: 481 KNPELTRECMKDGWFHTGDIGEIHPNGVVKIIDRKKHLIKLSQGEYIALEYLENVYSITP 540

Query: 538 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 597
           I+EDIWVYGDS K ML+AVV   EE+TKKWAY NG   SF  LCSL QL  Y+LSELK+ 
Sbjct: 541 IVEDIWVYGDSSKPMLIAVVALNEENTKKWAYLNGFLDSFSALCSLDQLHEYVLSELKST 600

Query: 598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGR 656
           AERNKLRGFE IKG IL+ RPFDMERDLVTATLKKKRNKLL YYQ+EIDQLY+ L   R
Sbjct: 601 AERNKLRGFERIKGAILESRPFDMERDLVTATLKKKRNKLLSYYQLEIDQLYKTLGGKR 659

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068616|ref|XP_002302784.1| predicted protein [Populus trichocarpa] gi|222844510|gb|EEE82057.1| predicted protein [Populus trichocarpa]

 Score = 1083 bits (2802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/662 (77%), Positives = 583/662 (88%), Gaps = 6/662 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           +K FAAQVEEG+EGKDGKPSVGPVYRNLL+   +P +D D+ T+WDIFS S +KYP  +M
Sbjct: 3   LKAFAAQVEEGREGKDGKPSVGPVYRNLLSKKEYPPLDRDVTTSWDIFSSSAKKYPEYKM 62

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTYKEVY+EVLQI SALRASGAEPG RVGIYG+NCPQW+EAMEA
Sbjct: 63  LGWRKFVDGKVGPYVWKTYKEVYDEVLQISSALRASGAEPGYRVGIYGSNCPQWIEAMEA 122

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SL+CVPLYDT+GP AVNFI+DHAEIDFVFVQDKKVKELL PDC SAQRL+ +VCFT
Sbjct: 123 CNAQSLVCVPLYDTIGPRAVNFIIDHAEIDFVFVQDKKVKELLDPDCASAQRLKAIVCFT 182

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q GIK YSW+E+L +GK N  EI PPQP +ICTIMYTSGTSGDPKGVV+
Sbjct: 183 SLTEEEKDRAAQMGIKSYSWEEYLCMGKENPSEIFPPQPLSICTIMYTSGTSGDPKGVVI 242

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
            HET+A FV G+DLF++QFEDKMT DDVYLSFLPLAH+LDR+IEEYFFR+GASVGYYHGD
Sbjct: 243 LHETVAAFVRGIDLFMEQFEDKMTTDDVYLSFLPLAHVLDRMIEEYFFRKGASVGYYHGD 302

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIK---KALEELRPLRRRIFDAL---KLAWMN 354
           LNALRDDLMELKPT LAGVPRVFEKI EG++   KAL+EL PLRR IFD L   KL WMN
Sbjct: 303 LNALRDDLMELKPTCLAGVPRVFEKIQEGMEIPIKALQELSPLRRNIFDVLYRYKLGWMN 362

Query: 355 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 414
            GY+Q+ ASPLADLLAFRKVKA+LGGRLRL+I GGA LSTEVEEFLRVT CAF++QGYGL
Sbjct: 363 RGYRQKYASPLADLLAFRKVKAKLGGRLRLIICGGASLSTEVEEFLRVTSCAFVIQGYGL 422

Query: 415 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 474
           TE+CGP T+ FPDEMCM+GT G V+VY++L LEEVPEMGY PL +PPCGE+C+RGKTLFS
Sbjct: 423 TESCGPATMAFPDEMCMLGTVGAVAVYNDLCLEEVPEMGYDPLGNPPCGEICLRGKTLFS 482

Query: 475 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 534
           GYYKNP+LTRES+ DGWFHTGDIG+ILPNGVVKIIDRKKNLIK+SQGEY+A+EYLENVY 
Sbjct: 483 GYYKNPELTRESMKDGWFHTGDIGEILPNGVVKIIDRKKNLIKLSQGEYIAIEYLENVYN 542

Query: 535 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL 594
             PI+EDIW+YGDS KSMLVAVVV  EE+TK WAY NGH GSF ELCSL QLQ  +LSEL
Sbjct: 543 NTPIVEDIWIYGDSCKSMLVAVVVLHEENTKSWAYLNGHMGSFTELCSLHQLQKLVLSEL 602

Query: 595 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP 654
           K  AERNKL+GFEHIKGVIL+  PFD+E+DLVTATLKKKRNKL+ +Y+VEID+LY+KLA 
Sbjct: 603 KTTAERNKLKGFEHIKGVILESCPFDIEKDLVTATLKKKRNKLVSHYRVEIDELYQKLAE 662

Query: 655 GR 656
           GR
Sbjct: 663 GR 664

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437622|ref|XP_002278345.1| PREDICTED: long chain acyl-CoA synthetase 1 [Vitis vinifera] gi|297744008|emb|CBI36978.3| unnamed protein product [Vitis vinifera]

 Score = 1074 bits (2777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/660 (76%), Positives = 576/660 (87%), Gaps = 3/660 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA QVE G+EG+DGKPSVGPVYRN LA +GFP +DS+LNTAWD   +S +KYPGNRM
Sbjct: 1   MKTFAVQVENGREGRDGKPSVGPVYRNFLAKSGFPPMDSNLNTAWDNLRISSEKYPGNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV GK GPY WKTY+EVYEE+L I SAL+ASGA+PG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWREFVGGKLGPYKWKTYREVYEEILHIGSALQASGAQPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SLICVPLYDTLGPGAV++I+DHAE+DFVFVQDKKVKELL+PDCRSA+RL++MVCFT
Sbjct: 121 CSAYSLICVPLYDTLGPGAVDYIIDHAEVDFVFVQDKKVKELLNPDCRSAKRLKLMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S T EQK+ A   GIKPYSWDEFLH+GK N  E+ PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SPTEEQKDKAADIGIKPYSWDEFLHMGKENPSEVFPPQPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + T V GVD+F++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFF +GASVGYYHGD
Sbjct: 241 THENVTTIVRGVDIFMEQFEDKMTVDDVYLSFLPLAHILDRIIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGY 357
           +NALR+DLMELKPTL AGVPRVFE++HEGIKKA++EL P+RRRIF  L   KL+WMN GY
Sbjct: 301 MNALREDLMELKPTLFAGVPRVFERVHEGIKKAVQELNPIRRRIFGVLYKYKLSWMNSGY 360

Query: 358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 417
           K REASPLADLLAFRKVKARLGGR+RL+ISGGAPLSTEVEEFLRVT CAFL QGYGLTET
Sbjct: 361 KHREASPLADLLAFRKVKARLGGRVRLIISGGAPLSTEVEEFLRVTSCAFLTQGYGLTET 420

Query: 418 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 477
           CG T++ FPDEM M+GT G VSVYSELRLEEVPEMGY P  DPP GE+CVRGKT+F+GY+
Sbjct: 421 CGLTSIGFPDEMSMIGTVGAVSVYSELRLEEVPEMGYDPFGDPPRGEICVRGKTIFAGYH 480

Query: 478 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 537
           KNP+LT ESI DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEYVA+EYLE VY  A 
Sbjct: 481 KNPELTLESIRDGWFHTGDIGEMLPNGVLKIIDRKKNLVKLSQGEYVAVEYLEKVYGTAD 540

Query: 538 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 597
           I+EDIWVYG+S KSMLVAVVVP EE+TKKWA  NGH GS  ELCSL  L +Y+LSELK A
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPHEENTKKWADLNGHKGSLSELCSLNLLHSYVLSELKAA 600

Query: 598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR 657
           AE +KLRGFEHIKGVIL+ R F+ E+DLVT TLKK+R+K+L +YQ +ID+LY  L  GR 
Sbjct: 601 AELSKLRGFEHIKGVILEARLFEAEQDLVTPTLKKRRDKMLKHYQAKIDELYANLGEGRH 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505647|ref|XP_003521601.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1070 bits (2767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/656 (76%), Positives = 575/656 (87%), Gaps = 3/656 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KYP NRM
Sbjct: 1   MKSFAAKVEEGREGINGELSIGPVYRNLLSKNQFPPLDPDLSTAWDIFSMAVKKYPKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVD K GPYVWKTYKEVY+EVL I SALRASGAE G ++GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDAKIGPYVWKTYKEVYDEVLHIGSALRASGAELGSKIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DH E+DFVFVQD+KV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHGELDFVFVQDRKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW EFLH+GK N   I  PQP NICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAISIGIKPYSWQEFLHMGKENPSNISAPQPNNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE IATFV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENIATFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGY 357
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  L   KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 417
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 418 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 477
           CG TT+ +PDEMCM+GT GPVSVY+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSVYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 478 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 537
           KNP+LTRE+I DGWFHTGDI ++ PNGVVKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQPNGVVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540

Query: 538 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 597
           I+ED+WVYG+S KS LVAVVVP EE TKKWA+SNGH   F +LCSL QL+ ++LSELK  
Sbjct: 541 IVEDVWVYGNSFKSALVAVVVPNEEITKKWAFSNGHIAPFSKLCSLDQLKKHVLSELKVT 600

Query: 598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 653
           AERNKL+GFE+IKGVILDP+PFDMERDLVT+T+KK+RN +L YYQVEID +Y  L+
Sbjct: 601 AERNKLKGFEYIKGVILDPQPFDMERDLVTSTMKKRRNNMLKYYQVEIDDVYRSLS 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572815|ref|XP_003554561.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1064 bits (2751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/655 (76%), Positives = 573/655 (87%), Gaps = 3/655 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA +VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KY  NRM
Sbjct: 1   MKGFAVKVEEGREGTNGELSIGPVYRNLLSKNEFPPLDPDLSTAWDIFSMAVKKYRKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTY+EVY+EVL I SALRASGAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDGKIGPYVWKTYEEVYDEVLHIGSALRASGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLGPGAVNFI+DH E+DFVFVQDKKV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHNLICVPLYDTLGPGAVNFIIDHGELDFVFVQDKKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW+EFLH+GK N   I PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAIAIGIKPYSWEEFLHMGKENPSNISPPQPNSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE I  FV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENITVFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGY 357
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  L   KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 417
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 418 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 477
           CG TT+ +PDEMCM+GT GPVS+Y+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSIYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 478 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 537
           KNP+LTRE+I DGWFHTGDI ++  NG VKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQLNGAVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540

Query: 538 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 597
           I+ED+WVYG+S KS LVAVVVP EE TKKWA+SNGH   F +LCSL QL+ ++LSELK  
Sbjct: 541 IVEDVWVYGNSFKSALVAVVVPNEETTKKWAFSNGHMAPFSKLCSLDQLKKHVLSELKMT 600

Query: 598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 652
           AERNKL+GFE+IKGVILDP+PFDMERDLVT+T+KK+RN +L YYQVEID+LY  L
Sbjct: 601 AERNKLKGFEYIKGVILDPQPFDMERDLVTSTMKKRRNNMLKYYQVEIDELYRSL 655

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511417|ref|XP_003625997.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355501012|gb|AES82215.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula]

 Score = 1041 bits (2692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/660 (73%), Positives = 569/660 (86%), Gaps = 9/660 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EGK+GK SVGPVYRNLLA + FP  D DL TAWDIFS++ +KYP NRM
Sbjct: 1   MKSFAAKVEEGREGKNGKLSVGPVYRNLLAKDQFPPSDPDLTTAWDIFSVAAKKYPQNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGKFG YVWKTYK+VY+EV+ I SALRASGA+ G R+G+YG+NCPQW+ AMEA
Sbjct: 61  LGWREFVDGKFGSYVWKTYKQVYDEVMHIGSALRASGAQHGSRIGVYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKV +LLSPDC+SA RL+ +VCFT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVMQLLSPDCKSASRLKAIVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
            LT E+K+ A   G+KPYSW+EFL +GK     I PPQ  +ICTIMYTSGTSGDP+GVVL
Sbjct: 181 KLTNEEKDKATSIGVKPYSWEEFLQMGKETPSTISPPQAHDICTIMYTSGTSGDPQGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG- 299
           THE I  FV G+D+F++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHG 
Sbjct: 241 THENITYFVRGMDIFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGV 300

Query: 300 -----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLA 351
                DL ALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  L   KL 
Sbjct: 301 YSIIHDLTALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYKRKLG 360

Query: 352 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG 411
           WM  GYK   ASP ADLLAFRKVKARLGGR+RL+I+GGAPLS+E+EEFLRVT  AF+ QG
Sbjct: 361 WMKKGYKHCNASPFADLLAFRKVKARLGGRVRLIITGGAPLSSEIEEFLRVTSGAFVCQG 420

Query: 412 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 471
           YGLTETCG TT+ FPDEMCM+GT GPVS+Y+E++LEEVPEMGY+PL +P CGE+C+RGK+
Sbjct: 421 YGLTETCGSTTLAFPDEMCMLGTVGPVSIYNEIQLEEVPEMGYNPLGNPSCGEICLRGKS 480

Query: 472 LFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 531
           +FSGY+KNP+LT+ESI+DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLEN
Sbjct: 481 VFSGYHKNPELTKESIVDGWFHTGDIGEMQPNGVVKIIDRKKNLIKLSQGEYIALEYLEN 540

Query: 532 VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL 591
           VY + PI+ED+WVYG+S KS+LVAVVVP EE TKKWAY+NG  GSF ELCSL + + Y+L
Sbjct: 541 VYGITPIVEDVWVYGNSFKSVLVAVVVPNEEITKKWAYTNGFVGSFSELCSLDEFKKYVL 600

Query: 592 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 651
           SELK  AERNKL+GFE IKGVILDP PFDMERDLVTATLKK+RN +L YYQVEID++Y++
Sbjct: 601 SELKLTAERNKLKGFEQIKGVILDPHPFDMERDLVTATLKKRRNNMLKYYQVEIDEVYQR 660

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534712|ref|XP_003535896.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1035 bits (2675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/656 (75%), Positives = 568/656 (86%), Gaps = 3/656 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VDGK GPYVWKTYKEVY+EVL + SALRASG+EPG ++GIYG+NCP+W+ AME 
Sbjct: 61  LGKRKIVDGKIGPYVWKTYKEVYDEVLHMSSALRASGSEPGTKIGIYGSNCPEWIVAMEV 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S ICVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFICVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +LT E+K  A   GIKPYSW EFLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 TLTEEEKAKATAIGIKPYSWHEFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TYENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGY 357
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  L   KL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 417
           K REAS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHREASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 418 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 477
           CGPTT+ FPDEMCM+GT G VS+Y+E++LEEVPEMGY+PL+ PPCGE+CVRGKT+F+ YY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIKLEEVPEMGYNPLETPPCGEICVRGKTVFTAYY 480

Query: 478 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 537
           KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGITP 540

Query: 538 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 597
           I+EDIWVYG+S KSMLVAVVVP EE   KWAYSNGH  SF +LCSL QL+ Y+LSELK  
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPNEEFANKWAYSNGHIASFPKLCSLDQLKKYVLSELKLT 600

Query: 598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 653
           AERNKLRGFEHIKGVIL+P  FDMERDLVTATLKKKRNKLL YYQVEID++Y+ L 
Sbjct: 601 AERNKLRGFEHIKGVILEPHEFDMERDLVTATLKKKRNKLLKYYQVEIDEIYQSLT 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499773|ref|XP_003518711.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1033 bits (2671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/655 (75%), Positives = 568/655 (86%), Gaps = 3/655 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VD K GPYVWKTYKEVY+EVL + SALRASGAEPG ++GIYG+NCP+W+ AMEA
Sbjct: 61  LGKRKIVDEKIGPYVWKTYKEVYDEVLHMSSALRASGAEPGTKIGIYGSNCPEWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S +CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K  A   GIKPYSW +FLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKAKATAIGIKPYSWHDFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TNENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGY 357
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  L   KL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 417
           K R+AS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHRQASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 418 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 477
           CGPTT+ FPDEMCM+GT G VS+Y+E+ LEEVPEMGY+PL+ PPCGE+CVRGKT+F+GYY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIMLEEVPEMGYNPLETPPCGEICVRGKTVFTGYY 480

Query: 478 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 537
           KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY V P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGVTP 540

Query: 538 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 597
           I+EDIWVYG+S KSMLVAVVVP EE   KWAYSNGH  SF  LCSL QL+ Y+LSELK  
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPNEEVANKWAYSNGHIASFPILCSLDQLKKYVLSELKLT 600

Query: 598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 652
           AERNKLRGFEHIKGVIL+P+ FDMERDLVTATLKKKRNKLL YYQVEID+LY+ L
Sbjct: 601 AERNKLRGFEHIKGVILEPQEFDMERDLVTATLKKKRNKLLKYYQVEIDELYQSL 655

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518374|ref|XP_004166217.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Cucumis sativus]

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/656 (73%), Positives = 561/656 (85%), Gaps = 4/656 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGKDGKPSVGPVYRN+LA   FPS   DL+T+WD+FS+S  KY   RM
Sbjct: 1   MKRFSVKVEEGREGKDGKPSVGPVYRNVLAEKEFPSPYEDLSTSWDLFSVSANKYAERRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPY+WKTYKEVY +VL I SALRA GAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWRKFVDGKPGPYIWKTYKEVYGDVLNIGSALRAIGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SLICVPLYDTLG GAVNFI+DHAEID VF+QDKK KELL+  C   +RL+V +CFT
Sbjct: 121 CNAHSLICVPLYDTLGHGAVNFIIDHAEIDIVFIQDKKAKELLNSGCTIPERLKVFICFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV 239
           SL  E+K  A   G+KPYSWDEFL L  K N  EI PP+P +ICTIMYTSGTSG PKGVV
Sbjct: 181 SLKEEEKISATNNGMKPYSWDEFLRLVRKENPSEISPPRPLDICTIMYTSGTSGTPKGVV 240

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           LT ETI TF+ GVD+ ++QFEDKMT DDVYLSFLPLAHILDR +EEYFFR+GASVGYYHG
Sbjct: 241 LTQETITTFIRGVDIQMEQFEDKMTEDDVYLSFLPLAHILDRTVEEYFFRKGASVGYYHG 300

Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMG 356
           DL+A++DDLMELKPTLL GVPRVFEKIHEGIK+A++ L P+RR+ FD L   KL+WMN G
Sbjct: 301 DLDAIKDDLMELKPTLLVGVPRVFEKIHEGIKQAVQVLNPVRRKAFDLLYKYKLSWMNSG 360

Query: 357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 416
           YKQ++ASPLADLLAFRKVKARLGGRLRL+ISGGA LSTEVEEFLRVTCCAF VQGYGLTE
Sbjct: 361 YKQKDASPLADLLAFRKVKARLGGRLRLIISGGAALSTEVEEFLRVTCCAFFVQGYGLTE 420

Query: 417 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY 476
           TCGPTT+ FPDEMCM+G  G V++++EL LEEVP+MGY+PL D PCGE+CVRGKT+F+ Y
Sbjct: 421 TCGPTTIGFPDEMCMLGNVGGVTLFNELCLEEVPDMGYNPLGDRPCGEICVRGKTVFTEY 480

Query: 477 YKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 536
           YK+P+LT+ESI DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLENVY + 
Sbjct: 481 YKDPELTKESIKDGWFHTGDIGEMFPNGVVKIIDRKKNLIKLSQGEYIALEYLENVYSIT 540

Query: 537 PIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 596
           PI+EDIW+YG+S KSMLVAVVV  EE+TKKWA SNG   SF ELC L QL++Y+LSEL +
Sbjct: 541 PIVEDIWIYGNSFKSMLVAVVVLHEENTKKWANSNGFLCSFSELCPLEQLRHYVLSELTS 600

Query: 597 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 652
            AERNKL+ FE+IKGV+L+ RPFD+E+DLVTATLKKKRN LL +Y+V+I+  Y+ L
Sbjct: 601 TAERNKLKRFEYIKGVVLELRPFDIEKDLVTATLKKKRNNLLKHYEVQINAEYKNL 656

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442179|ref|XP_003591367.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355480415|gb|AES61618.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula]

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/660 (71%), Positives = 555/660 (84%), Gaps = 9/660 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEGKEGK+G  SVGPVYRNLL+ N FP +D D  +AWDIFS SV+K+P NRM
Sbjct: 23  MKSFSVKVEEGKEGKNGMLSVGPVYRNLLSQNEFPPMDPDFTSAWDIFSTSVKKHPQNRM 82

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VDGK GPYVWKTYKE Y+EVLQI SAL+A GA+ G ++GIYG+NCPQW+ AMEA
Sbjct: 83  LGWRKIVDGKIGPYVWKTYKEAYDEVLQIASALKACGAKSGSKIGIYGSNCPQWIIAMEA 142

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A + ICVPLYDTLG GA+NFI+DHAEID+VFVQDKKVKELL+ DC+S++RL+ +V FT
Sbjct: 143 CSAQNFICVPLYDTLGSGAINFIIDHAEIDYVFVQDKKVKELLNADCKSSKRLKAIVGFT 202

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A   GIKPY+W++F+  GK N   I PP   +ICTIMYTSGTSGDPKGVVL
Sbjct: 203 SLTEEEKDEATNAGIKPYTWNQFVQKGKENPSSINPPLAHDICTIMYTSGTSGDPKGVVL 262

Query: 241 THETIATFVSGVDLFLDQFEDK-MTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           THE +   V G+DLF++QFEDK MTVDDVYLSFLPLAHILDR IEEYFFR GASVGYYHG
Sbjct: 263 THENVLALVRGMDLFMEQFEDKVMTVDDVYLSFLPLAHILDRCIEEYFFRNGASVGYYHG 322

Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR----RRIFDALK-LAWMN 354
           DLNAL +DL ELKPTL AGVPRVFEK++EG+    E     +       + AL+ L WMN
Sbjct: 323 DLNALLEDLSELKPTLFAGVPRVFEKVYEGMVTYQESSGTTKSSEENSFWHALQLLGWMN 382

Query: 355 MGYKQREASPLADLLAFRK-VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 413
            GY QREAS LADLLAFRK VKARLGGR+RL+ISGGA LS+E+EEFLRVT CAF+ QGYG
Sbjct: 383 KGYTQREASRLADLLAFRKVVKARLGGRVRLIISGGAALSSEIEEFLRVTTCAFVCQGYG 442

Query: 414 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 473
           LTETCGPTT+ FPDEMCM+G  G V+V++ELRLEEVP+MGY+PL  PPCGE+CVRGK++F
Sbjct: 443 LTETCGPTTLTFPDEMCMLGNVGVVTVFNELRLEEVPDMGYNPLGTPPCGEICVRGKSVF 502

Query: 474 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 533
           +GY+KNP+LT+E+IIDGWFHTGDIG++LPNG+++IIDRKKNL+K+SQGEY+ALEYLENVY
Sbjct: 503 TGYHKNPELTKEAIIDGWFHTGDIGEMLPNGIIRIIDRKKNLVKLSQGEYIALEYLENVY 562

Query: 534 CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 593
            + PI+EDIWVYG+S KSMLVAVVVP E+ T KWAY+NGH  SF +LCSL QL+ Y+LSE
Sbjct: 563 TITPIVEDIWVYGNSFKSMLVAVVVPNEDVTNKWAYANGHISSFSKLCSLDQLKKYVLSE 622

Query: 594 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 653
           LK+ A RNK  GFEHIKGVILDP PFDMERDLVTATLKKKRN +L YY+V+ID+LY+ L 
Sbjct: 623 LKSTAVRNK--GFEHIKGVILDPLPFDMERDLVTATLKKKRNNMLKYYKVDIDELYKSLT 680

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	657
TAIR|locus:2065195	660	LACS1 "AT2G47240" [Arabidopsis	0.993	0.989	0.690	1.5e-255
TAIR|locus:2138141	666	LACS4 "long-chain acyl-CoA syn	0.990	0.977	0.507	2.9e-183
TAIR|locus:2136148	666	AT4G11030 [Arabidopsis thalian	0.996	0.983	0.501	5e-179
TAIR|locus:2014265	665	LACS3 "long-chain acyl-CoA syn	0.986	0.974	0.506	7.3e-178
TAIR|locus:2010177	665	LACS2 "long-chain acyl-CoA syn	0.980	0.968	0.468	2.5e-159
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.922	0.864	0.409	1.2e-113
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.929	0.872	0.387	9e-109
DICTYBASE|DDB_G0269474	673	fcsB "fatty acyl-CoA synthetas	0.968	0.945	0.353	9.2e-107
DICTYBASE|DDB_G0269242	667	fcsA "long-chain-fatty-acid-Co	0.914	0.901	0.378	5.3e-104
FB|FBgn0036821	704	CG3961 [Drosophila melanogaste	0.926	0.865	0.360	8.6e-104

TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)]

 Score = 2460 (871.0 bits), Expect = 1.5e-255, P = 1.5e-255
 Identities = 453/656 (69%), Positives = 546/656 (83%)

Query:     1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
             MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct:     1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query:    61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct:    61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
             C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct:   121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
             +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct:   181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query:   241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
             TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct:   241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query:   301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGY 357
             LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+AL   KLAW+N GY
Sbjct:   301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query:   358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 417
                +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct:   361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query:   418 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 477
              G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct:   421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query:   478 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 537
             KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct:   481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query:   538 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 597
             +++DIWVYGDS KSMLVAVVVP  E   +WA   G    F ELCS  +L+ +I+SELK+ 
Sbjct:   541 VVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKST 600

Query:   598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 653
             AE+NKLR FE+IK V ++ +PFD+ERDLVTATLK +RN LL YYQV+ID++Y KLA
Sbjct:   601 AEKNKLRKFEYIKAVTVETKPFDVERDLVTATLKNRRNNLLKYYQVQIDEMYRKLA 656

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1778 (630.9 bits), Expect = 2.9e-183, P = 2.9e-183
 Identities = 332/654 (50%), Positives = 457/654 (69%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct:     5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct:    65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct:   245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGYK 358
               L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+    K  +M  G  
Sbjct:   305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query:   359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 418
               EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query:   419 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 478
               T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query:   479 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 538
               DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct:   485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query:   539 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 598
             ++ +WVYG+S +S L+A+  P +   ++WA  NG +G +  LC   + + +IL EL   A
Sbjct:   545 VDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMA 604

Query:   599 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 652
             +  K++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  ID++Y+ +
Sbjct:   605 KEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKTI 658

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1738 (616.9 bits), Expect = 5.0e-179, P = 5.0e-179
 Identities = 332/662 (50%), Positives = 446/662 (67%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct:     5 KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct:    65 GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct:   245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD---ALKLAWMNMGYK 358
               L +DL ELKP++   VPRV ++++ G+++ L      ++++FD   + K   M  G  
Sbjct:   305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query:   359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 418
                ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query:   419 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 478
               T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query:   479 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 538
               DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E LENVY    +
Sbjct:   485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544

Query:   539 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 598
             IE IWVYG+S +S LVA+  P ++  ++WA  NG  G F  +C   + + +IL EL   A
Sbjct:   545 IESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAKAFILGELVKTA 604

Query:   599 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY----EKLAP 654
             + NKL+GFE IK V L+P  FDMERDL+T T KKKR +LL YYQ  I ++Y    E LA 
Sbjct:   605 KENKLKGFEIIKDVHLEPVAFDMERDLLTPTYKKKRPQLLKYYQNVIHEMYKTTKESLAS 664

Query:   655 GR 656
             G+
Sbjct:   665 GQ 666

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1727 (613.0 bits), Expect = 7.3e-178, P = 7.3e-178
 Identities = 330/652 (50%), Positives = 448/652 (68%)

Query:     4 FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
             +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct:     6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query:    63 WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
              R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct:    66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query:   123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
             A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct:   126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query:   183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
             T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct:   186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query:   243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
             E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct:   246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query:   303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD-ALKLAWMNM--GYKQ 359
              L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+ A K    NM  G   
Sbjct:   306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query:   360 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 419
              +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct:   366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query:   420 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 479
              T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct:   426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query:   480 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 539
              DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y     I
Sbjct:   486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545

Query:   540 EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE 599
             E IWVYG+S +S LVAVV P +   + WA  +  +G F  +C   + + ++L E    A+
Sbjct:   546 ESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKTKEFVLGEFNRVAK 605

Query:   600 RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 651
               KL+GFE IKGV LD  PFDMERDL+T + K KR +LL YYQ EID++Y+K
Sbjct:   606 DKKLKGFELIKGVHLDTVPFDMERDLITPSYKMKRPQLLKYYQKEIDEMYKK 657

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1552 (551.4 bits), Expect = 2.5e-159, P = 2.5e-159
 Identities = 304/649 (46%), Positives = 418/649 (64%)

Query:     8 VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
             VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct:    11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query:    68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
             D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct:    71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query:   128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
              VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct:   131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query:   188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
             E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct:   191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query:   248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
              V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct:   251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query:   308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGYKQREASP 364
             +  LKPT+  GVPRV++K++ GI + +     +R+++FD     KL  M  G+ Q EASP
Sbjct:   311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query:   365 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 424
               D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct:   371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query:   425 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 483
                   MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct:   431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query:   484 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 543
              + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+E LEN Y   P+I  IW
Sbjct:   491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQIW 550

Query:   544 VYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNK 602
             VYG+S +S LV VVVP  +  + WA  N  +   F  LC  ++ Q Y L EL + A++ +
Sbjct:   551 VYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAKQYQ 610

Query:   603 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 651
             L+GFE +K + L+P PFD+ERDL+T T K KR +LL +Y+  +DQLY +
Sbjct:   611 LKGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLQHYKGIVDQLYSE 659

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IGI

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
 Identities = 257/627 (40%), Positives = 355/627 (56%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L
Sbjct:    77 FPD-HPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F
Sbjct:   136 VHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
                + +  LLS  C S    +R++V    L      +   +G+K  S+   L+ G+ N  
Sbjct:   196 CVAETLNSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQ 253

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272
                PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+
Sbjct:   254 RFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISY 308

Query:   273 LPLAHILDR---VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             LPLAHI +R   ++  YF   G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ G
Sbjct:   309 LPLAHIYERANQILTVYF---GVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAG 365

Query:   330 IKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 389
             I  A++    L+ R+F+A   A        + ASP+ D L F K+K RLGGR+R + SG 
Sbjct:   366 IINAVKTSGGLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGA 425

Query:   390 APLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELRLEE 448
             +PLS EV EFL+V     + +GYG+TET C  + +   D +   G  G  +   E++L +
Sbjct:   426 SPLSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNL--TGHVGSPNPACEVKLVD 483

Query:   449 VPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 506
             VPEM Y+  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP G +
Sbjct:   484 VPEMNYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRL 543

Query:   507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKK 566
             KIIDRKKN+ K++QGEY+A E +ENVY     +   ++YGDS  S LVAVV    +  K 
Sbjct:   544 KIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKS 603

Query:   567 WAYSNGHAGSFL-ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDL 625
             WA S G  G  L ELC+  +++  +LS++       +LRGFE  K V L   PF +E  L
Sbjct:   604 WAASEGIKGGDLRELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLENGL 663

Query:   626 VTATLKKKRNKLLIYYQVEIDQLYEKL 652
             +T T K KR +   Y+   I  +Y++L
Sbjct:   664 LTPTFKIKRPQAKEYFAEAITNMYKEL 690

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 242/624 (38%), Positives = 349/624 (55%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L
Sbjct:    77 FPD-HPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F
Sbjct:   136 LFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
                + +  LLS        +R++V           +   TG+   S+ + L  G+ +   
Sbjct:   196 CVPQTLNILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHP 254

Query:   214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
               PP+P +I TI YTSGT+G PKGVVLTH  +   V+G  +  + F       DVY+S+L
Sbjct:   255 FSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-----DVYISYL 309

Query:   274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
             PLAHI +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A
Sbjct:   310 PLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSA 369

Query:   334 LEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 393
             ++    +++R+F+    +        R  S   D L F K+K +LGGR+R + SG +PLS
Sbjct:   370 VKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLS 429

Query:   394 TEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEM 452
              +V +FLR+     + +GYG+TET C  + +   D +   G  G  +   E++L +VPEM
Sbjct:   430 PDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLS--GHVGSPNPACEVKLVDVPEM 487

Query:   453 GYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIID 510
              Y+  D P P GE+CVRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +KIID
Sbjct:   488 NYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIID 547

Query:   511 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYS 570
             RKKN+ K++QGEY+A E +ENVY     +   +++GDS  S LVA+V    E  K WA S
Sbjct:   548 RKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAAS 607

Query:   571 NGHAGSFL-ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTAT 629
              G     L +LC+  +++  +L+E+ +     +LRGFE  K V L P PF +E  L+T T
Sbjct:   608 EGIKYEHLGQLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLLTPT 667

Query:   630 LKKKRNKLLIYYQVEIDQLYEKLA 653
              K KR +   Y+   I ++Y ++A
Sbjct:   668 FKIKRPQAKAYFAEAISKMYAEIA 691

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
 Identities = 233/659 (35%), Positives = 372/659 (56%)

Query:     4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
             +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct:    27 YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query:    62 GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct:    83 GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
                 S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct:   143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK-VN-EMEILPPQPFNICTIMYTSGTSGDPKGV 238
             S+  E   +A + G+  Y++DE +  GK  N + +  PP P  + TIMYTSGT+G PKGV
Sbjct:   202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query:   239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
             ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct:   262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query:   299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD-ALKLAWMNM-- 355
             GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+ A  L ++++  
Sbjct:   317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query:   356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 415
             G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct:   377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query:   416 ETCGPTTVC--FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 473
             E CG    C    DE   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ 
Sbjct:   437 EGCGGDA-CKRLDDES--VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSIS 493

Query:   474 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 533
             SGYYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYVA+E +E + 
Sbjct:   494 SGYYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIV 553

Query:   534 CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 593
               +  +E + +YGDS KS ++A++ P  E   +WA S        E+C        +L +
Sbjct:   554 VKSEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQDFIKVVLDD 613

Query:   594 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 652
             +    +++ L GFE  K + L P  F  + +L+T + K KR+++  Y++ EI +LY KL
Sbjct:   614 IIKNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFEDEIKKLYSKL 672

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;ISS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 236/623 (37%), Positives = 352/623 (56%)

Query:    36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
             S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct:    48 SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query:    95 ASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
               G   G R+GI+  N P+WV + M A N  SL+ V LY TLG  A+ ++++H+EI  + 
Sbjct:   106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLL 164

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLT-AEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
              + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  
Sbjct:   165 CEGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPA 221

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-DDVYLS 271
             +   P P ++CT++YTSG++G+PKGV+LTH  + + V+G +     F     + +DV++S
Sbjct:   222 QHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGAN-----FSPAGVIPEDVHMS 276

Query:   272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
             +LPLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ + 
Sbjct:   277 YLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLW 336

Query:   332 KALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 391
               +     L++ +F+   L       +    +P+ D L F K K RLGGR++ ++SG AP
Sbjct:   337 FTVNNDSWLKKFLFN-WGLNSKQSALRLGSTTPIWDKLVFSKTKDRLGGRVKFILSGSAP 395

Query:   392 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 451
             L  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +VPE
Sbjct:   396 LDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLIDVPE 454

Query:   452 MGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII 509
             M Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG + II
Sbjct:   455 MNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSII 514

Query:   510 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKK-WA 568
             DRKKN+ K+SQGEYVA EYLE+V+  +P    ++VYGDSL S LV VVVP  E  +K +A
Sbjct:   515 DRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFA 574

Query:   569 --YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLV 626
               Y      +   L    +L   ILS     A   KL GFE +K + ++  PF  E +L+
Sbjct:   575 SKYPELDVSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNLL 634

Query:   627 TATLKKKRNKLLIYYQVEIDQLY 649
             T + K KR +L   YQ  ID LY
Sbjct:   635 TPSFKPKRPQLKERYQTIIDTLY 657

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0010009 "external side of endosome membrane" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)]

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 227/630 (36%), Positives = 354/630 (56%)

Query:    30 ASNG-FPS-VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVL 87
             + NG F S +  ++ T +  F            LGWR  +     PY W  Y E      
Sbjct:    88 SKNGKFVSYITENVRTLYQTFREGAYASNNGPCLGWRETLTS---PYQWINYDEALLRAK 144

Query:    88 QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
                + + A GA P   +GIY  N P+W+   + C + SL+ VPLYDTLGP A  FI+   
Sbjct:   145 NFGAGMLALGARPKQLIGIYSQNRPEWILYEQGCYSFSLVVVPLYDTLGPDACAFIIRQT 204

Query:   148 EIDFVFVQDK-KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL 206
             ++  V V+D  K   LL    RS   L+++V    +     E A   GI+ +S+ +   L
Sbjct:   205 DMQVVIVEDDGKAAMLLEKAPRS---LKIIVAIKPIRQTTLERARSRGIQIFSFIDVEKL 261

Query:   207 G-KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMT 264
             G K N  E+ PP   ++CT+ YTSGT+G+PKGV+LTH  +   V+GV  + L   + ++ 
Sbjct:   262 GAKGNHPEV-PPTAEDLCTVCYTSGTTGNPKGVMLTHGNV---VAGVCSVILQMGDHRIR 317

Query:   265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFE 324
               DV +SFLPLAH+ +R  E   +  G  VG+Y GD+  L +DL  LKPT++  VPR+  
Sbjct:   318 AGDVMVSFLPLAHMFERCCENGMYYVGGCVGFYSGDIKELTNDLKMLKPTVMPAVPRLLN 377

Query:   325 KIHEGIKKALEELRPLRRRIFD-ALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 383
             ++++ I+  +     L+R +F+ A++     +       +   D L F+KV    GG LR
Sbjct:   378 RVYDKIQNDISA-SGLKRGLFNMAMRAKEKEIARGVLRRNGCWDKLVFKKVHQAFGGNLR 436

Query:   384 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 443
             L++ G APL+  V  F+R      +++GYG TE  G  T+    +        PVS  + 
Sbjct:   437 LMVVGSAPLAGNVLTFMRCALGCLVLEGYGQTECTGAITLTVQGDHVPNHVGPPVSC-NA 495

Query:   444 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 502
             ++L +VPEM Y    +   GEVCVRG  +F GYYK+P+ T E+I  +GW HTGD+G  LP
Sbjct:   496 VKLVDVPEMEY--FANQNTGEVCVRGSNVFHGYYKDPEKTAEAIDSEGWHHTGDVGMWLP 553

Query:   503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEE 562
             NG ++IIDR+K++ K+SQGEY+  E +EN+Y ++  +  ++VYG+SLKS ++AVVVP  +
Sbjct:   554 NGTLRIIDRRKHIFKLSQGEYIVPEKIENIYTLSQYVNQVYVYGESLKSCIIAVVVPDTD 613

Query:   563 DTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDME 622
               K+WA  N   G+   LC+   ++  I++++ N  +++ L+ FE +K + L P PF ++
Sbjct:   614 VLKQWATENNVRGTLSVLCNNKNVKELIMNDMLNWGKQSGLKSFEQVKDIYLHPDPFSVQ 673

Query:   623 RDLVTATLKKKRNKLLIYYQVEIDQLYEKL 652
               L+T T K KR +L  Y++ +++ +Y+ L
Sbjct:   674 NGLLTPTFKAKRPQLKSYFKPQLEDMYKHL 703

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O88813	ACSL5_RAT	6, ., 2, ., 1, ., 3	0.3472	0.9162	0.8814	yes	no
Q8JZR0	ACSL5_MOUSE	6, ., 2, ., 1, ., 3	0.3424	0.9162	0.8814	yes	no
O22898	LACS1_ARATH	6, ., 2, ., 1, ., 3	0.6905	0.9939	0.9893	yes	no
Q1ZXQ4	FCSB_DICDI	6, ., 2, ., 1, ., 3	0.3500	0.9710	0.9479	yes	no
Q9ULC5	ACSL5_HUMAN	6, ., 2, ., 1, ., 3	0.3626	0.9101	0.8755	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.976
3rd Layer	6.2.1.3	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	657
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.0
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	0.0
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-152
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-119
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-113
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-102
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	3e-88
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	8e-87
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-76
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	2e-74
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	8e-56
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	3e-55
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	3e-53
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	5e-44
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	3e-43
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-42
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-41
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	3e-40
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	6e-40
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-39
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-37
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-34
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	3e-32
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	8e-32
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-31
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-30
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-30
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-29
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-27
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-26
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	4e-26
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-24
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-23
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-23
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	5e-23
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	5e-23
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-22
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	3e-22
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	4e-22
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-21
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-21
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	5e-21
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	8e-21
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-20
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	1e-20
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-20
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-20
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	4e-20
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	6e-20
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-19
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-19
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-19
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	5e-19
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	6e-19
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-18
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-18
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-18
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-18
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-18
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	6e-18
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	6e-18
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-17
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-17
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-17
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-17
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	3e-17
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-16
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	1e-16
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-16
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-16
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-16
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	9e-16
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	3e-15
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	4e-15
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-15
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	5e-15
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-14
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-14
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	3e-14
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-14
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	3e-14
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-14
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-14
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	7e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	8e-14
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	9e-14
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-13
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	3e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-12
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	8e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-11
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	1e-11
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	4e-11
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	6e-11
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	6e-11
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	7e-11
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	8e-11
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-10
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	1e-10
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	2e-10
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	4e-10
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	6e-10
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	9e-10
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	1e-09
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	6e-09
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	7e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	9e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-08
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-08
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	1e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-08
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-08
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	3e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-08
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	5e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	7e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	9e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-07
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-07
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	3e-07
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	3e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-07
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	4e-07
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	5e-07
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-07
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	7e-07
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	8e-07
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	1e-06
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	1e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-06
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-06
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	3e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	3e-06
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	3e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	4e-06
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	5e-06
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	6e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	6e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	7e-06
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	7e-06
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	7e-06
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	8e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	3e-05
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-05
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-05
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	5e-05
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	5e-05
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	8e-05
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-04
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-04
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-04
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	1e-04
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-04
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	2e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	4e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	4e-04
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	4e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	5e-04
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-04
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	6e-04
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	6e-04
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	7e-04
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	0.001
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.001
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.001
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	0.002
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	0.002
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.002
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.002
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.002
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	0.003
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	0.003
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.004
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	0.004
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	0.004

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 1298 bits (3360), Expect = 0.0
 Identities = 515/659 (78%), Positives = 581/659 (88%), Gaps = 3/659 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAAQVEEG +GKDGKPSVGPVYRNLL+  GFP +DSD+ TAWDIFS SV+KYP N+M
Sbjct: 1   MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VDGK GPY+WKTYKEVYEEVLQI SALRASGAEPG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SLICVPLYDTLGPGAV++I+DHAEIDFVFVQDKK+KELL PDC+SA+RL+ +V FT
Sbjct: 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S+T E+ + A Q G+K YSW +FLH+GK N  E  PP+P +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE +ATFV GVDLF++QFEDKMT DDVYLSFLPLAHILDR+IEEYFFR+GASVGYYHGD
Sbjct: 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGY 357
           LNALRDDLMELKPTLLAGVPRVFE+IHEGI+KAL+EL P RR IF+AL   KLAWMN GY
Sbjct: 301 LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360

Query: 358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 417
             ++ASP+AD LAFRKVKA+LGGRLRL+ISGGAPLSTE+EEFLRVT CAF+VQGYGLTET
Sbjct: 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET 420

Query: 418 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 477
            GPTT+ FPDEMCM+GT G  +VY+ELRLEEVPEMGY PL +PP GE+CVRGK LFSGYY
Sbjct: 421 LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480

Query: 478 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 537
           KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALEYLENVY   P
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNP 540

Query: 538 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 597
           I+EDIWVYGDS KSMLVAVVVP EE+T KWA  NG  GSF ELCSL +L+ +ILSELK+ 
Sbjct: 541 IVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKST 600

Query: 598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGR 656
           AE+NKLRGFE+IKGVIL+ +PFD+ERDLVTATLKK+RN LL YYQVEID++Y KLA  R
Sbjct: 601 AEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYRKLAEKR 659

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  765 bits (1976), Expect = 0.0
 Identities = 332/654 (50%), Positives = 440/654 (67%), Gaps = 8/654 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
            + +  +VEE +    GKPS GPVYR++ A +G   + +D+++ W  FS +V+KYP N+M
Sbjct: 2   AETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQM 61

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R   D K GPYVW TYKEVY+  ++I SA+R+ G  PG R GIYG+NCP+W+ AMEA
Sbjct: 62  LGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVC 178
           CN+  +  VPLYDTLG  AV FI++HAE+   FVQ+ K+  +LS  P C S   L+ +V 
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSS--NLKTIVS 179

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           F  +++EQKE A + G+  +SW+EF  +G ++  E+ P Q  +ICTIMYTSGT+G+PKGV
Sbjct: 180 FGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGV 238

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           +LT+  I   V   D  L   +   T +D Y S+LPLAH+ D+VIE Y   +GAS+G++ 
Sbjct: 239 ILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ 298

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD---ALKLAWMNM 355
           GD+  L +D+  LKPT+  GVPRV+++I+ GI + +     LR+++FD     KL  +  
Sbjct: 299 GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK 358

Query: 356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 415
           G KQ EASP  D L F K+K  LGGR+RL++SG APL   VEEFLRVT C+ L QGYGLT
Sbjct: 359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLT 418

Query: 416 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 475
           E+CG       +   MVGT G      E RLE VPEMGY  L D P GE+C+RG TLFSG
Sbjct: 419 ESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG 478

Query: 476 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 535
           Y+K  DLT E +IDGWFHTGDIG+  PNG +KIIDRKKN+ K+SQGEYVA+E LEN Y  
Sbjct: 479 YHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSR 538

Query: 536 APIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 595
            P+I  IWVYG+S +S LVAVVVP  +  + WA +N   G F  LC  ++ + YIL EL 
Sbjct: 539 CPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELN 598

Query: 596 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 649
           +  ++ +LRGFE +K + L+P PFD+ERDL+T T K KR +LL YY+  IDQLY
Sbjct: 599 STGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLY 652

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  739 bits (1910), Expect = 0.0
 Identities = 340/661 (51%), Positives = 461/661 (69%), Gaps = 7/661 (1%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  QVEEGKEG DG+PSVGPVYR++ A +GFP+    +++ WD+F MSV+KYP N ML
Sbjct: 5   KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L      +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD---ALKLAWMNMGYK 358
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ +FD   + K   M  G  
Sbjct: 305 KLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQS 364

Query: 359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 418
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 419 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 478
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484

Query: 479 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 538
             DLT+E +IDGW HTGD+G+  PNG +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query: 539 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 598
           ++ +WVYG+S +S LVA+  P ++  ++WA  NG +G +  LC   + + +IL EL   A
Sbjct: 545 VDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMA 604

Query: 599 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY----EKLAP 654
           +  K++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  ID++Y    EKLA 
Sbjct: 605 KEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKTTNEKLAS 664

Query: 655 G 655
            
Sbjct: 665 R 665

Length = 666

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  729 bits (1884), Expect = 0.0
 Identities = 273/583 (46%), Positives = 363/583 (62%), Gaps = 49/583 (8%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GPY W +YKEV E  L I S LRA G +PG ++GI+  N P+W+   +AC + SL+ VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           YDTLG  A+ +IL+  EI  VF    KV                                
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                 YS++E   LGK N++   PP+P ++ TIMYTSGT+G+PKGV+LTH  I   V+G
Sbjct: 89  ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL 311
           ++  + +F   +   DVY+S+LPLAHI +RV+E      G  +GYY GD   L+ D+ EL
Sbjct: 143 INKIVPEF---IGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD---ALKLAWMNMGYKQREASPLADL 368
           KPT+  GVPRV ++I++GI   +     L+R +F+     KLA +  G     ASPL D 
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257

Query: 369 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 428
           L F+K+KA LGGR+RL++SGGAPLS + +EFLRV     ++QGYGLTETC   T+  P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317

Query: 429 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 487
               G  GP     E++L +VPEMGY   DDPP GE+C+RG  +F GYYKNP+ T E+  
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376

Query: 488 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD 547
            DGWFHTGDIG+ LP+G +KIIDRKKNL K+SQGEYVALE LEN+Y  +P+++ I VYGD
Sbjct: 377 EDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGD 436

Query: 548 SLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNKLRGF 606
           SLKS LVA+VVP E+  +KWA  NG   G F ELC+  +L+  IL +L    + N L+GF
Sbjct: 437 SLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGF 496

Query: 607 EHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 649
           E +K + L P PF  E  L+T T K KR +L   Y+ EID++Y
Sbjct: 497 EIVKAIHLTPEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEMY 539

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  540 bits (1394), Expect = 0.0
 Identities = 258/644 (40%), Positives = 364/644 (56%), Gaps = 29/644 (4%)

Query: 24  VYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTY 79
           VYR+  +     + FP    ++ T  D F  +V+ +   + LG R  VDG  G Y W TY
Sbjct: 23  VYRSARSPLKLVSRFPDHP-EIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTY 81

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            E       I S L   G   G  VG+Y  N P+W+    AC+A S + VPLYDTLGP A
Sbjct: 82  GEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDA 141

Query: 140 VNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
           V FI++HAE+  +F   + +  LLS   +  S   +R++V           +   TG++ 
Sbjct: 142 VKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPS---VRLIVVVGGADEPLPSLPSGTGVEI 198

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ + L  G+ +     PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G  L   
Sbjct: 199 VTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTK 258

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +       DV++S+LPLAHI +RV +      G +VG+Y GD   L DDL  L+PT+  
Sbjct: 259 FY-----PSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFC 313

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIF----DALKLAWMNMGYKQREASPLADLLAFRK 373
            VPR++ +I++GI  A++E   L+ R+F    +A K A  N     +  SP+ D L F K
Sbjct: 314 SVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALEN----GKNPSPMWDRLVFNK 369

Query: 374 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMV 432
           +KA+LGGR+R + SG +PLS +V EFLR+     +++GYG+TET C  + +   D +   
Sbjct: 370 IKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLS-- 427

Query: 433 GTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESI-IDG 490
           G  G  +   E++L +VPEM Y+  D P P GE+CVRG  +F GYYK+   TRE I  DG
Sbjct: 428 GHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDG 487

Query: 491 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK 550
           W HTGDIG  LP G +KIIDRKKN+ K++QGEY+A E +ENVY     +   +VYGDSL 
Sbjct: 488 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLN 547

Query: 551 SMLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHI 609
           S LVAVVV   E  K WA S G       +LC+  +++  +L+++       +LRGFE  
Sbjct: 548 SSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFA 607

Query: 610 KGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 653
           K V L P PF +E  L+T T K KR +   Y+   I  +Y +LA
Sbjct: 608 KAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYAELA 651

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  453 bits (1168), Expect = e-152
 Identities = 217/599 (36%), Positives = 320/599 (53%), Gaps = 49/599 (8%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   TY+E+YE V  + S L + G   G RV I+ AN P+W  A  A  AL  + VP+
Sbjct: 41  GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQD----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
           Y T  P  + +IL+ +E   +FV++      V  +L  DC     L V++       E K
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLE-DCPKVVDLIVIIDLVREAVEAK 159

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEM----EILPPQPFNICTIMYTSGTSGDPKGVVLTHE 243
            +     +     DE + L  ++       I PP+P ++ TI+YTSGT+G PKGV+LTH 
Sbjct: 160 AL-----VLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR 214

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE-EYFFRRGASVGYYHGDLN 302
            +   V+G+D  L          D  LSFLPLAHI +R  E       G +V +   D  
Sbjct: 215 NLLAQVAGIDEVLPPI----GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK-EDPR 269

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD-ALKLAWMNM-----G 356
            L +DL E++PT++ GVPRV+EK+++GI + + +   +RR++F  ALK+A+  +     G
Sbjct: 270 TLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329

Query: 357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTCCAFLVQGYGLT 415
                   +AD L FRK++  LGGR+R  +SGGAPLS E+  F R +     +++GYGLT
Sbjct: 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIP--ILEGYGLT 387

Query: 416 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 475
           ET    +V  PD   ++GT G      E+++ +              GE+ VRG  +  G
Sbjct: 388 ETSAVVSVNPPDRF-VLGTVGKPLPGIEVKIADD-------------GEILVRGPNVMKG 433

Query: 476 YYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 534
           YYKNP+ T E+   DGWF TGD+G++  +G + I  RKK LIK+S G+ +A E +E+   
Sbjct: 434 YYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLA 493

Query: 535 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA--GSFLELCSLVQLQNYILS 592
            +P+IE I V GD  K  LVA++VP  +  +KWA S       S  EL    +L   IL 
Sbjct: 494 KSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILP 552

Query: 593 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 651
            +       +L GFE IK  +L P+ F  E   +T TLK KR+ +L  Y+ EI+ +Y +
Sbjct: 553 RVNKGN--KRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSR 609

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  363 bits (935), Expect = e-119
 Identities = 178/572 (31%), Positives = 263/572 (45%), Gaps = 122/572 (21%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   T+ E+ E V ++ + L A G +PG RV I   N P+WV A  A  A   + VP+
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           Y T  P  V +IL+ +    VFV+DK       PD      L  ++ +TS T        
Sbjct: 61  YPTSSPEEVAYILNDSGARVVFVEDK-------PD-----DLATLI-YTSGT-------- 99

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            TG                                       +PKGV+LTH  +    + 
Sbjct: 100 -TG---------------------------------------NPKGVMLTHRNLLAQAAA 119

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHGDLNALRDDLME 310
           +   +      ++  D  LSFLPLAH+ ++ + EY     GA V  +      L +DL E
Sbjct: 120 LLEVIP-----LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARV-NFAESPETLLEDLRE 173

Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLA 370
           ++PT+   VPRV+EKI+ GI+  +    PL+R++F                         
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRW----------------------- 210

Query: 371 FRKVKARLGGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVCFPD 427
                A  GGRLR  +SGGAPL  EV EF R   +     +++GYGLTET G  TV  P 
Sbjct: 211 -----ALGGGRLRFAVSGGAPLPPEVLEFFRALGIP----ILEGYGLTETSGVATVNRPG 261

Query: 428 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 487
           ++ + GT G      E+R+ E              GE+ VRG  +  GYYKNP+ T E++
Sbjct: 262 DIRI-GTVGKPLPGVEVRIAED-------------GEILVRGPNVMKGYYKNPEATAEAL 307

Query: 488 I-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
             DGW HTGDIG++  +G + I DRKK+LI  + G+ +A + +EN    +P I    V G
Sbjct: 308 DEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG 367

Query: 547 DSLKSMLVAVVVPCEEDTKKWAYSNG-HAGSFLELCSLVQLQNYILSELKNAAERNKLRG 605
           D     L A++V   E  +KWA  +G    ++ +L    +++  I  E+   A     R 
Sbjct: 368 DDRPY-LTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEV-EEANARLAR- 424

Query: 606 FEHIKGVILDPRPFDMERDLVTATLKKKRNKL 637
            E IK  +L P+ F +E   +T T+K +R  +
Sbjct: 425 VEQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  354 bits (911), Expect = e-113
 Identities = 223/669 (33%), Positives = 337/669 (50%), Gaps = 81/669 (12%)

Query: 41  LNTAWD-------IFSMSVQKYPGNRMLGWRPFV--------DGK------FGPYVWKTY 79
           + T W+       +F  S +KY   R+LG R  +        DG+       G Y W TY
Sbjct: 50  VETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITY 109

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            +V+E V    S L A G     RV I+     +W+ A++ C   ++  V +Y +LG  A
Sbjct: 110 GQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEA 169

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG-IKPY 198
           +   L+  E+  V    K++K+L+    +     RV +       +       +      
Sbjct: 170 LCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRV-IYMDDEGVDSDSSLSGSSNWTVS 228

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
           S+ E   LGK N ++   P P +I  IMYTSG++G PKGV++TH  I   V+GV      
Sbjct: 229 SFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGV------ 282

Query: 259 FEDKMTV------DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD------ 306
               MTV      +DVYL++LPLAHIL+   E      GA++GY  G    L D      
Sbjct: 283 ----MTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIK 336

Query: 307 -----DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQRE 361
                D   LKPTL+  VP + +++ +G++K ++    L +++FD        + YK+R 
Sbjct: 337 KGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFD--------IAYKRRL 388

Query: 362 AS-------------PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFL 408
           A+              L D L F+K++A LGGR+R ++SGGAPLS + + F+ +   A +
Sbjct: 389 AAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPI 448

Query: 409 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCV 467
            QGYGLTETC   T    D+   VG  GP      ++L    E GY   D P P GE+ +
Sbjct: 449 GQGYGLTETCAGATFSEWDDTS-VGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVI 507

Query: 468 RGKTLFSGYYKNPDLTRESI-IDG----WFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 522
            G ++  GY+KN + T E   +D     WF+TGDIGQ  P+G ++IIDRKK+++K+  GE
Sbjct: 508 GGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGE 567

Query: 523 YVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELC 581
           YV+L  +E    V+P +++I V+ D   S  VA+VVP ++  +KWA   G    +F ELC
Sbjct: 568 YVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELC 627

Query: 582 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 641
              +    +   L  AA+  +L  FE    + L P P+  E  LVTA LK KR ++   +
Sbjct: 628 EKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKF 687

Query: 642 QVEIDQLYE 650
           + ++ +LYE
Sbjct: 688 KDDLKKLYE 696

Length = 696

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  325 bits (835), Expect = e-102
 Identities = 182/602 (30%), Positives = 279/602 (46%), Gaps = 53/602 (8%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E++E ++     L   G   G  V IY     +W+ ++    + S++   +Y  LG 
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLS-------PDCRSAQRLRVMVCFTSLTAEQKEMA 190
            A+ + L   E   +    K V  LL        P+         ++   SL A      
Sbjct: 183 DALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-------TIIYLDSLPASVDTEG 235

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIAT 247
            +      +W + +  G           P N   +  IMYTSGT+GDPKGV+ TH ++  
Sbjct: 236 CRL----VAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTA 291

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD- 306
            +  ++  L+        D+ Y S+LPLAHI++  +   F  RGA +G+  G    L D 
Sbjct: 292 GILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDT 349

Query: 307 ------DLMELKPTLLAGVPRVFEKIHEGIKKALEELRP----LRRRIFD---ALKLAWM 353
                 DL E +P  L GVPR+F+     IKKA+E   P    L+RR+FD     +L  +
Sbjct: 350 FARPHGDLTEFRPVFLIGVPRIFDT----IKKAVEAKLPPVGSLKRRVFDHAYQSRLRAL 405

Query: 354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 413
             G      +P  +   F   +A LGGR+R ++SGG PLS   +EF+ V     ++QG+G
Sbjct: 406 KEGKD----TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNV-VFGMVIQGWG 460

Query: 414 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTL 472
           LTET     +    ++      G +    E++L +  E  Y   D P P GE+ +RG  L
Sbjct: 461 LTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFL 517

Query: 473 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 531
           F GYYK  +LTRE +  DGWFHTGD+G I  NG ++II R K L K   GEY+ALE LE 
Sbjct: 518 FKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEA 577

Query: 532 VYCVAPII--EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 589
           +Y    ++    + V     +S + A+V+  E     +A  +G  G +  +    + Q  
Sbjct: 578 LYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKK 637

Query: 590 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 649
               L+  A     + FE ++ V +    +  E  ++TA +K KR  +   Y   I +L+
Sbjct: 638 ATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELF 697

Query: 650 EK 651
             
Sbjct: 698 AD 699

Length = 700

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  280 bits (719), Expect = 3e-88
 Identities = 125/475 (26%), Positives = 194/475 (40%), Gaps = 71/475 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++ +ALRA G  PG RV I   N P+WV A+ A        VPL  +L  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +E   +   D+ + +LL    +    L +++                G   
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD------------DGEGL 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D+ L  G   E    P  P ++  I+YTSGT+G PKGV+LTH  +    +G+     
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPT 314
                +T  D  L  LPL               G ++        D   L D + + K T
Sbjct: 168 ----GLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVT 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKV 374
           +L GVP +   + +  ++   +L                                     
Sbjct: 224 VLYGVPTLLRLLLKAPEEKKYDLS------------------------------------ 247

Query: 375 KARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM-V 432
                  LRLV+SGG PL  E+            LV GYG TET    T   P +  +  
Sbjct: 248 ------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKP 301

Query: 433 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGW 491
           G+ G       + ++ + E G  P+     GE+C+RG  +  GY  +P+LT E  + DGW
Sbjct: 302 GSIGR--PLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGW 358

Query: 492 F--HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 544
               TGD+G+   +G ++I+ RK + +KI  GE +    +E V    P + +  V
Sbjct: 359 GMYRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  280 bits (718), Expect = 8e-87
 Identities = 171/584 (29%), Positives = 266/584 (45%), Gaps = 98/584 (16%)

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
            G++  Y   T+ +V ++  +I +AL++ G EPG R+ I   NC +W+ A  A      +
Sbjct: 1   GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPD--CRSAQRLRVMVCFTS 181
            VPLY TL    + ++L+H++   +FV        +K  +              +     
Sbjct: 58  SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDH-- 115

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF--NICTIMYTSGTSGDPKGVV 239
                           Y WD+ L      E     P P   ++ TI+YTSGT+G PKGV+
Sbjct: 116 ----------------YKWDDLL---AATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVM 156

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY-FFRRGASVGYYH 298
           L+    A    G    +      +T +D  LS+LPLAHI +RVI E      GA V ++ 
Sbjct: 157 LSFGAFAFAAQGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEV-FFV 210

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK 358
             L+    DL   +PT+   VPR++ K  +GI   L +L P +  +   LK+        
Sbjct: 211 ESLDTFAADLQRARPTVFFSVPRLWTKFQQGI---LAKLPPEKLNLL--LKI-------- 257

Query: 359 QREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGL 414
                P+   L  +K+   LG  + RL  SG AP+   +  + R   +     + +GYG+
Sbjct: 258 -----PILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLP----ICEGYGM 308

Query: 415 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 474
           TE    +T+ +P +   +GT G      EL++ E              GE+ +R   L S
Sbjct: 309 TENFAYSTLNYPGDR-RIGTVGKPIPGVELKISED-------------GEILIRSPGLMS 354

Query: 475 GYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 533
           GYYK+P+ T E+   DGW HTGD G+I  +G +KI  R K L K S+G+YVA   +EN+ 
Sbjct: 355 GYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLL 414

Query: 534 CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 593
              P +E + V G  L    VA+VV  E        ++      +E  SL Q    + SE
Sbjct: 415 SANPHVEQVCVVGSGLPQP-VALVVLSEA-------ADPLEREEVE-ESLQQTLAKVNSE 465

Query: 594 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 637
           L++          E +  +++    + +E  L+T TLK KRN +
Sbjct: 466 LES---------HERLSALVVVKEAWTVENGLLTPTLKIKRNVV 500

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  253 bits (649), Expect = 2e-76
 Identities = 141/495 (28%), Positives = 208/495 (42%), Gaps = 75/495 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+     ++ +AL+A G +PG RV I   N P+++ A  A      + VPL   L P
Sbjct: 40  TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99

Query: 138 GAVNFILDHAEIDFVFVQD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             + +IL+ A    +        + E ++        + ++                   
Sbjct: 100 RELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG-------------DADDR 146

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            P + +     G   + +  P  P ++  ++YTSGT+G PKGVVLTH  +   ++     
Sbjct: 147 LPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNL---LANAAGI 203

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +T DDV LS+LPL HI            G  VG     L A           L
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIF-----------GLIVG-----LLAP----------L 237

Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQR--EASP--LADLLAF 371
           L G   V                 L    FD  ++ W+   YK       P  L +LL  
Sbjct: 238 LGGGTLVL----------------LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDN 281

Query: 372 R-KVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 429
             K    L   LRLV+SGGAPL  E+ E F        +++GYGLTET    T+  PD++
Sbjct: 282 PEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDL 341

Query: 430 C-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 488
               G+ G      E+R+  V   G   L     GE+ VRG  +  GY+  P+ T E+  
Sbjct: 342 LAKPGSVGRPLPGVEVRI--VDPDGGEVLPGEV-GEIWVRGPNVMKGYWNRPEATAEAFD 398

Query: 489 -DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG- 546
            DGW  TGD+G +  +G + I+ R K+LI    GE +  E +E V    P + +  V G 
Sbjct: 399 EDGWLRTGDLGYVDEDGYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGV 457

Query: 547 --DSLKSMLVAVVVP 559
             +     +VAVVV 
Sbjct: 458 PDERWGERVVAVVVL 472

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  250 bits (640), Expect = 2e-74
 Identities = 179/621 (28%), Positives = 272/621 (43%), Gaps = 85/621 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLG 136
           TYK+ YE   Q   A    G E    VGI G N P+W   A+ A  A   I V +Y T  
Sbjct: 10  TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGG-IAVGIYTTNS 68

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P A  ++ + +E + + V + K  + +         L+ ++ +     ++KE        
Sbjct: 69  PEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-REPLKEKE------PN 121

Query: 197 PYSWDEFLHLGK----VNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            YSW EF+ LG+         I+  Q P   CT++YTSGT+G PKGV+L+H+ I      
Sbjct: 122 LYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKA 181

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG--YYHGDLNALRDDLM 309
               +D         +  +S+LPL+HI  ++++ +      SVG   Y    +AL+  L+
Sbjct: 182 AVKHMDLRTVG---QESVVSYLPLSHIAAQILDIWL---PISVGGCVYFAQPDALKGTLV 235

Query: 310 ----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALK-------LAWMNMGYK 358
               E++PT   GVPRV+EKI E +K    +   L+R+I    K       L  M     
Sbjct: 236 KTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESP 295

Query: 359 QREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLRVTCCAFL------VQG 411
                 LA  L F+KV+  LG  R +   +G AP+S E  EF       FL      ++ 
Sbjct: 296 PPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEF-------FLSLNIPIMEL 348

Query: 412 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 471
           YG++ET GP TV  P     + + G      E ++      G         GE+C+ G+ 
Sbjct: 349 YGMSETSGPHTVSNPQNY-RLLSCGKALPGCETKIHNPDADGI--------GEICIWGRH 399

Query: 472 LFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 530
           +F GY    + T E+I  DGW H+GD+G +  +G + I  R K LI  + GE V    +E
Sbjct: 400 VFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIE 459

Query: 531 N-VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFL-----ELCSLV 584
             V    PII +  + GD  K + + + + CE D +      G     L     E C L+
Sbjct: 460 EAVKKELPIISNAMLVGDKRKFLSMLLTLKCEVDPE-----TGEPLDNLTEEAIEFCRLL 514

Query: 585 QLQNYILSEL----------------KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA 628
                 +SE+                K   +       +  K VIL  + F +    +  
Sbjct: 515 GSHATTVSEILAGKDPLVYEAIEEGIKRVNKEAISNAQKVQKWVIL-EKDFSVPGGELGP 573

Query: 629 TLKKKRNKLLIYYQVEIDQLY 649
           T+K KR  +   Y+ EID+LY
Sbjct: 574 TMKLKRPVVAKKYKDEIDKLY 594

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  197 bits (504), Expect = 8e-56
 Identities = 138/521 (26%), Positives = 200/521 (38%), Gaps = 116/521 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ +ALRA G + G RV ++  N  +++EA  A   +  +  P+   L P
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ AE   V V  + V  L      +A   ++    T +       A     + 
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLL------AAILPQLPTVRTVIVEGDGPAA-PLAPEV 145

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
             ++E L        +       +      ++YTSGT+G PKGVVL+H            
Sbjct: 146 GEYEELL----AAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH---RNLFLHSLA 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGY---YHG---------DL 301
                  K++ DDVYL  +P+ H+             A  + Y     G         D 
Sbjct: 199 VCAWL--KLSRDDVYLVIVPMFHV------------HAWGLPYLALMAGAKQVIPRRFDP 244

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQRE 361
             L D +   + T    VP +                                M  K   
Sbjct: 245 ENLLDLIETERVTFFFAVPTI------------------------------WQMLLKAPR 274

Query: 362 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGP 420
           A    D              LRLVI GGA L    + EF         VQGYG+TET   
Sbjct: 275 AYF-VDF-----------SSLRLVIYGGAALPPALLREFKEKFGIDL-VQGYGMTETSPV 321

Query: 421 TTVCFPDE--------MCMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCV 467
            +V  P++            G   P  V  E R+     +E+P  G         GE+ V
Sbjct: 322 VSVLPPEDQLPGQWTKRRSAGRPLP-GV--EARIVDDDGDELPPDGGEV------GEIIV 372

Query: 468 RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV-AL 526
           RG  L  GY+  P+ T E+I  GW HTGD+G I  +G + I DR K++I IS GE +   
Sbjct: 373 RGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVI-ISGGENIYPR 431

Query: 527 EYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 564
           E LE+     P + ++ V G   +      VAVVV     T
Sbjct: 432 E-LEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGAT 471

Length = 521

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  195 bits (497), Expect = 3e-55
 Identities = 123/486 (25%), Positives = 185/486 (38%), Gaps = 122/486 (25%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D+   + +++P    L    F   K       TY E+ E   +  + L+  G + G RV 
Sbjct: 3   DLLERAARRFPDRPAL---TFFGRKL------TYAELDELSDRFAAYLQQLGVKKGDRVA 53

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   NCPQ+  A         + VP         VN +    E++     D   K     
Sbjct: 54  LMLPNCPQFPIAYFGILKAGAVVVP---------VNPLYTPRELEHQL-NDSGAK----- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
                    V++   S        A+ +G                    +   P ++  +
Sbjct: 99  ---------VLIVAISFED-----ALASGAPLP--------------LPVELSPDDLAVL 130

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
            YT GT+G PKG +LTH  +   V+ V       +D    +D +L+ LPL HI       
Sbjct: 131 QYTGGTTGVPKGAMLTHRNL---VANVQQIAAWVKDLREGEDRFLTALPLFHI------- 180

Query: 286 YFFRRGASVGYYHGDLNAL----RD-DLMEL----KPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +G   G  N L    R  ++++     + T+  GVP ++             
Sbjct: 181 FGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLY------------- 227

Query: 337 LRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 396
                                          LL   + K      LRL ISGGAPL  EV
Sbjct: 228 -----------------------------NALLNHPEFKKYDFSSLRLCISGGAPLPVEV 258

Query: 397 -EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEVPEMG 453
            E F   T    LV+GYGLTET   TTV   D     G+ G P+     ++  +E  E+ 
Sbjct: 259 AERFEEKTGAP-LVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGNEL- 316

Query: 454 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 513
             P  +   GE+ VRG  +  GY+  P+ T E + DGW  TGDIG +  +G   I+DRKK
Sbjct: 317 --PPGEV--GELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVDRKK 372

Query: 514 NLIKIS 519
           ++I + 
Sbjct: 373 DMIIVG 378

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  194 bits (496), Expect = 3e-53
 Identities = 125/368 (33%), Positives = 189/368 (51%), Gaps = 19/368 (5%)

Query: 187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
           KE A + GI    +D+     K    +I    P  I +I+YTSGTSG PKGV+L+++ + 
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330

Query: 247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
             V  V L       K      +LS+LP++HI +RVI    F  G ++  +  D+N    
Sbjct: 331 NTV--VPLCKHSIFKKYNPKT-HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD---ALKLAWMNMGYKQREAS 363
           D+   K  +LAGVP+VF +I+  I   +  L PL+R +     +L+ +  N G+ +    
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKF--- 444

Query: 364 PLADLLAF-RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 422
            L  +     K+K ++   L ++++GG  LS ++ E L V       QGYGLTET GP  
Sbjct: 445 -LEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF 503

Query: 423 VCFPDEMCMVGTAGPVS--VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP 480
           V   D+       GP+S     ++R  E     Y   D  P GE+ ++  ++FSGY+   
Sbjct: 504 VQHADDNNTESIGGPISPNTKYKVRTWET----YKATDTLPKGELLIKSDSIFSGYFLEK 559

Query: 481 DLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 539
           + T+ +   DG+F TGDI QI  NG +  +DR K L+K+SQGEY+  + L N+Y     I
Sbjct: 560 EQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFI 619

Query: 540 EDIWVYGD 547
               VYGD
Sbjct: 620 NFCVVYGD 627

Length = 746

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  160 bits (407), Expect = 5e-44
 Identities = 104/352 (29%), Positives = 148/352 (42%), Gaps = 60/352 (17%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +   I+YTSGT+G PKGVVL+H      ++             T  DV LS LPL H++ 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSH---RNLLANAQALAQAIGL--TEGDVLLSVLPLFHVVG 55

Query: 281 RVIEEYF-FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                      G +V  Y G    L   + + + + T+L GVP ++              
Sbjct: 56  GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLY-------------- 101

Query: 338 RPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV- 396
                 +  A +               L+               LRL+ISGG PLS E+ 
Sbjct: 102 ----DALAKAAE----------DRGYDLS--------------SLRLLISGGEPLSPELL 133

Query: 397 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP 456
           E F        +++GYGLTET   T+     E+   GT G      E+R+  V E G  P
Sbjct: 134 ERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDEEG-KP 189

Query: 457 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNL 515
           L     GE+ VRG  +  GY+ NP  T  +   DGW+ TGD+G +   G + I  R K+L
Sbjct: 190 LPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRSKDL 249

Query: 516 IKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKS-MLVAVVVPCEEDT 564
           IK+  GE V    +E+V    P + +  V G  D  +   +VA VV      
Sbjct: 250 IKVG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGAD 300

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  161 bits (409), Expect = 3e-43
 Identities = 132/495 (26%), Positives = 197/495 (39%), Gaps = 123/495 (24%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ +   ++ +AL   G  PG  V     N  ++V    AC  +  +  P+      
Sbjct: 3   TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + FIL  A                        R RV+                    P
Sbjct: 63  RELGFILRQA------------------------RARVLFV------------------P 80

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFL 256
             +  F +             P ++  ++YTSGT+G+PKGV+ TH T+ A   S V+   
Sbjct: 81  DEFRGFDYAA----------MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL- 129

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T DDV L   PLAHI                G+ +G         +EL   LL
Sbjct: 130 -----GLTPDDVVLMPSPLAHI---------------TGFLYG---------LEL--PLL 158

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASP-LADLLAFRKVK 375
            G   V +   +   +ALE        +     + +  MG     A+P LADLLA     
Sbjct: 159 LGATVVLQDRWD-PARALE--------LIREHGVTFT-MG-----ATPFLADLLAAADAA 203

Query: 376 ARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMV 432
                 LR+ + GGAP+  E             +V+ YG+TE     TV  PD  +    
Sbjct: 204 GPDLPSLRVFLCGGAPVPRELARRAAEALGAK-VVRAYGMTE-VPLVTVGTPDDPDDKRA 261

Query: 433 GTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 487
            T G      E+R+      +VP     P ++   GE+ VRG  LF GY   PD T    
Sbjct: 262 ATDGRPVPGVEVRIVDDDGNDVP-----PGEE---GELQVRGPQLFLGYLDPPDNTEAFT 313

Query: 488 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG- 546
            DGWF TGD+G++  +G ++I  RKK++I I  GE ++   +E++    P + ++ V   
Sbjct: 314 DDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAEVAVVAM 372

Query: 547 --DSLKSMLVAVVVP 559
             + L   + AVVVP
Sbjct: 373 PDERLGERVCAVVVP 387

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  160 bits (406), Expect = 2e-42
 Identities = 118/459 (25%), Positives = 179/459 (38%), Gaps = 92/459 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V +  +AL A G   G RV I+  N P WV A         + VPL      
Sbjct: 32  TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL   +   +FV        L  D  +  RL  +        E+         K 
Sbjct: 92  DEAAYILARGDAKALFVLG----LFLGVDYSATTRLPALEHVVICETEE---DDPHTEKM 144

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ +FL  G   E       P ++  I++TSGT+G PKG +LTH  + +  +    +L 
Sbjct: 145 KTFTDFLAAGDPAERA-PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF---------FRRGASVGYYHGDLNALRDDL 308
                +T  D YL+  P  H+        F           RGA++       +   D++
Sbjct: 204 -----LTEGDRYLAANPFFHV--------FGYKAGVNAPLMRGATI-LPLPVFDP--DEV 247

Query: 309 MEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASP 364
             L    + T+L G P ++                              N   +  + S 
Sbjct: 248 FRLIETERITVLPGPPTMY------------------------------NSLLQHPDRSA 277

Query: 365 LADLLAFRKVKARLGGRLRLVISGGA----PLSTEVEEFLRVTCCAFLVQGYGLTETCGP 420
             DL             LRL ++G A     L    E  L V     ++ GYGL+E  G 
Sbjct: 278 -EDL-----------SSLRLAVTGAASMPVALLERFESELGV---DIVLTGYGLSEASGV 322

Query: 421 TTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 478
           TT    D+    + GT G      E ++  V E+G   +     GE+ VRG  +  GYY 
Sbjct: 323 TTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELG-EEVPVGEVGELLVRGPNVMKGYYD 379

Query: 479 NPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI 516
           +P+ T  +I  DGW HTGD+G++   G + I+DRKK++ 
Sbjct: 380 DPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418

Length = 513

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  157 bits (400), Expect = 2e-41
 Identities = 121/494 (24%), Positives = 190/494 (38%), Gaps = 111/494 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY + Y  V ++ +AL + G +PG RV     N  + +E   A   +  +   L
Sbjct: 21  GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTL 80

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L P  + +I++HAE   +FV D     LL      A RL  +           +M  
Sbjct: 81  NPRLSPEQIAYIINHAEDKVIFV-DDDFLPLLE---AIAPRLPTVKAVVVYDDA--DMPE 134

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFN-ICTIMYTSGTSGDPKGVVLTHETIA--TF 248
            +    Y+++E L   + +     P    N    + YTSGT+G+PKGVV +H ++   T 
Sbjct: 135 TSLPNVYAYEELL--EEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTL 192

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY----------- 297
            S +   L      ++  D  L  +P+ H+               + Y            
Sbjct: 193 ASALPDSLG-----LSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAKLVLP 236

Query: 298 --HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM 355
             + D  +L D + E K T+ AGVP +                             W+ +
Sbjct: 237 GRYLDPASLLDLIEEEKVTVSAGVPTI-----------------------------WLGL 267

Query: 356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQGYG 413
                       L         L    R+V+ G A   + +E+     V     ++  +G
Sbjct: 268 ------------LNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVE----VIHAWG 311

Query: 414 LTETCGPTTVCFPDEMCMVG-----------TAGPVSVYSELRL-----EEVPEMGYSPL 457
           +TET    TV       +V              G      ELR+      E+P  G +  
Sbjct: 312 MTETSPLGTVSRLKPH-LVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGKTV- 369

Query: 458 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 517
                GE+ VRG  +   YYK+P+ T E   DGWF TGD+  I  +G ++I DR K++IK
Sbjct: 370 -----GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIK 424

Query: 518 ISQGEYVALEYLEN 531
            S GE+++   LEN
Sbjct: 425 -SGGEWISSVELEN 437

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  151 bits (385), Expect = 3e-40
 Identities = 99/364 (27%), Positives = 139/364 (38%), Gaps = 81/364 (22%)

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           +  L P      TI++TSG++G PK VV T         G    L      +T DD +L 
Sbjct: 69  LADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLL 123

Query: 272 FLPLAH-----ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
            LPL H     I+ R         GA V     D  A+ + L     T ++ VP      
Sbjct: 124 SLPLFHVSGLAIVMRS----LLAGGALVLPDKFDAEAIAEALENHGVTHISLVP------ 173

Query: 327 HEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 386
                          +R+ +               A  L+               LR V+
Sbjct: 174 ------------TQLQRLLE------------SLGARWLS--------------SLRAVL 195

Query: 387 SGGAPLSTEVEEFLRVTCCAF---LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYS 442
            GGAP+       L          L   YG+TET     T+   D +  +G+ G      
Sbjct: 196 LGGAPIPPS----LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPLPGR 251

Query: 443 ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 502
           ELR+    +           GE+ VRG +LF GY     LT     DGWFHTGD+G +  
Sbjct: 252 ELRIVNPQD-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGYLDA 300

Query: 503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 559
            G + ++ R+ +LI IS GE +  E +E V    P +E+  V G   D      VA VVP
Sbjct: 301 EGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVP 359

Query: 560 CEED 563
            ++ 
Sbjct: 360 NDDP 363

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  149 bits (379), Expect = 6e-40
 Identities = 95/372 (25%), Positives = 142/372 (38%), Gaps = 86/372 (23%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I YTSGT+G PKG +LTH  +      +          +T  D  L  +PL H+   
Sbjct: 4   PALIQYTSGTTGRPKGAMLTHRNVLNNGYSI-----ARRLGLTEGDRTLVPVPLFHV--- 55

Query: 282 VIEEYF---------FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGI 330
                F            GA++       +       +   + T L GVP +F       
Sbjct: 56  -----FGLVLGVLASLTAGATL-VLMEKFDPGAALRLIERERITALHGVPTMF------- 102

Query: 331 KKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 390
              +  L       FD   L                                     GGA
Sbjct: 103 ---IALLEHPDFDKFDLSSLRTGIS--------------------------------GGA 127

Query: 391 PLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRLE 447
           P+  E V         A +  GYG+TET G  T    D+      GT G      E+++ 
Sbjct: 128 PVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIV 187

Query: 448 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 506
           + P+ G  P  +   GE+CVRG ++  GYY +P+ T E+I  DGW HTGD+G +  +G +
Sbjct: 188 D-PDGGEVPPGEV--GEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGYL 244

Query: 507 KIIDRKKNLIKISQGEYVA-LEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP--- 559
           +I+ R K++I I  GE +   E +E      P + +  V G   + L  ++ A VV    
Sbjct: 245 RIVGRIKDMI-IRGGENIYPAE-IEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPG 302

Query: 560 ---CEEDTKKWA 568
               EE+   + 
Sbjct: 303 ATLTEEELIAFC 314

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  152 bits (385), Expect = 2e-39
 Identities = 102/368 (27%), Positives = 145/368 (39%), Gaps = 92/368 (25%)

Query: 216 PPQPF----NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           PP       ++  + Y+SGT+G  KGV+LTH      ++ V   +         +DV L 
Sbjct: 150 PPVVVIKQDDVAALPYSSGTTGRSKGVMLTH---RNLIANVAQLVAGEGPNFDREDVTLC 206

Query: 272 FLPLAHILDRVIEEYFF--------RRGASV----GYYHGDLNALRDDLMELKPTLLAGV 319
            LP+ HI       Y          R GA+V     +   DL      + + K T L  V
Sbjct: 207 VLPMFHI-------YGLTVILLALLRLGATVVVMPRF---DLEKFLAAIEKYKVTHLPVV 256

Query: 320 PRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLG 379
           P +                         L L       K        DL           
Sbjct: 257 PPI------------------------VLALV------KHPIVDKY-DLS---------- 275

Query: 380 GRLRLVISGGAPLSTEVEE-FLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGP 437
             L+ + SG APL  E+ E F        L QGYG+TE+   TT+C   E     G+ G 
Sbjct: 276 -SLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGR 334

Query: 438 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 496
           +    E ++ + PE G   L     GE+ VRG  +  GY  NP+ T E+I  DGW HTGD
Sbjct: 335 LVPNVEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGD 392

Query: 497 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI-IEDIWVYGDSLKSMLVA 555
           +G    +G + I+DR K LIK     Y         + VAP  +E + +   S   +  A
Sbjct: 393 LGYFDEDGYLFIVDRLKELIK-----Y-------KGFQVAPAELEALLL---SHPEIADA 437

Query: 556 VVVPCEED 563
            V+P  ++
Sbjct: 438 AVIPYPDE 445

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  145 bits (368), Expect = 1e-37
 Identities = 132/495 (26%), Positives = 183/495 (36%), Gaps = 134/495 (27%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++  AL A G  PG RV +      ++V    A      + VPL  +   
Sbjct: 13  TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE+ +  + D +   L+ P          ++ +TS                
Sbjct: 73  ---------AELAY-ILSDSQPSLLVDP---------ALIIYTS---------------- 97

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                           GT+G PKGVVLTH  +A   +     ++
Sbjct: 98  --------------------------------GTTGRPKGVVLTHGNLA---ANARALVE 122

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +  + T  DV L  LPL H+                   HG  NAL          L A
Sbjct: 123 AW--RWTASDVLLHALPLHHV-------------------HGLFNALH-------CPLWA 154

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG----YKQREASPLADLLAFRK 373
           G    F          L    P  R     L    + MG    Y +     L +   F  
Sbjct: 155 GASVEF----------LPRFDPQERDALRLLPRITVFMGVPTIYTR-----LLEHYEFDD 199

Query: 374 VKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 432
             A     LRL +SG A L   V E +   T    L++ YG+TET G       D     
Sbjct: 200 AAAAAARNLRLFVSGSAALPVPVLERWEERT-GHTLLERYGMTET-GMALSNPLDGERRP 257

Query: 433 GTAG-PV-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-D 489
           GT G P+  V  E+R+  V E G  PL     GE+ VRG  +FS Y+  P+ T E+   D
Sbjct: 258 GTVGLPLPGV--EVRI--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTED 313

Query: 490 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY--VALEYLENVYCVAPIIEDIWVYG- 546
           GWF TGD+G +  +G  +I+ RK + I I  G Y   ALE +E      P + ++ V G 
Sbjct: 314 GWFKTGDVGVVDEDGYYRILGRKSDDI-IKSGGYKVSALE-IEEALLEHPGVAEVAVIGV 371

Query: 547 --DSLKSMLVAVVVP 559
                   +VAVVVP
Sbjct: 372 PDPDWGEAVVAVVVP 386

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  134 bits (339), Expect = 1e-34
 Identities = 97/335 (28%), Positives = 136/335 (40%), Gaps = 103/335 (30%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH  +          +D     ++  DVYL   PL      
Sbjct: 3   PALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVD-----LSPGDVYLLAAPL------ 51

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                          YH            L P L AG   V                 + 
Sbjct: 52  ---------------YHAAGGLF------LLPALAAGGTVVL----------------MP 74

Query: 342 RRIFDA---LKLAWMNMGYKQRE------ASP-----LADLLAFRKVKARLGGRLRLVIS 387
           +  FD    L L        +R         P     L  L  F +        LRL+I 
Sbjct: 75  K--FDPEAVLDLI-------ERHRVTHTFLVPTMFQRLLRLPDFARYD---LSSLRLIIY 122

Query: 388 GGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELR 445
           G AP+  E++  +        VQGYG+TET GPTT     E  +  +G+ G      E+R
Sbjct: 123 GAAPMPAELKRAMIEWFGPVFVQGYGMTET-GPTTTLLSPEDWLRKLGSVGRPVPGVEVR 181

Query: 446 L-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 498
           +      E+P  E+G          E+ VRG  + +GY+  P+ T E++ DGW HTGD+G
Sbjct: 182 IVDEDGRELPPGEVG----------EIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLG 231

Query: 499 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 533
            +  +G + I+DRKK++I IS G        EN+Y
Sbjct: 232 YLDEDGYLYIVDRKKDMI-ISGG--------ENIY 257

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  129 bits (326), Expect = 3e-32
 Identities = 108/496 (21%), Positives = 173/496 (34%), Gaps = 125/496 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++  E   +  AL+A G   G RV + G N  + V  + AC  L      L   L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                 L+  ++  +       ++    D  S  R+            +     +T +  
Sbjct: 61  NERTNQLEDLDVQLLLTDSLLEEKDFQAD--SLDRI------------EAAGRYETSLSA 106

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               +                   I T+M+TSGT+G PK V  T         G    L 
Sbjct: 107 SFNMD------------------QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR---RGASVGYYHGDLNALRDDLMELKPT 314
                 T DD +L  LPL HI    I    FR    GA++       N L + +   + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSI---LFRWLIEGATL-RIVDKFNQLLEMIANERVT 199

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKV 374
            ++ VP                            +L  +                    +
Sbjct: 200 HISLVPT---------------------------QLNRL--------------------L 212

Query: 375 KARLGG-RLRLVISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVC-FPDEM 429
                   LR ++ GG+ +   + E      +     +   YG+TETC  + V     EM
Sbjct: 213 DEGGHNENLRKILLGGSAIPAPLIEEAQQYGLP----IYLSYGMTETC--SQVTTATPEM 266

Query: 430 CM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 488
                  G      E++++   + G+        GE+ V+G  L  GY    +LT     
Sbjct: 267 LHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPAFEQ 318

Query: 489 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS 548
            GWF+TGDIG++   G + ++ R+ +LI IS G        EN+Y     IE + +Y   
Sbjct: 319 QGWFNTGDIGELDGEGFLYVLGRRDDLI-ISGG--------ENIYPEE--IETV-LY--Q 364

Query: 549 LKSMLVAVVVPCEEDT 564
              +  AVVVP  +  
Sbjct: 365 HPGIQEAVVVPKPDAE 380

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  130 bits (328), Expect = 8e-32
 Identities = 155/585 (26%), Positives = 235/585 (40%), Gaps = 123/585 (21%)

Query: 35  PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR 94
             +D    T  D++  +V ++        RP +D  FG     TY E+ ++V +  + LR
Sbjct: 25  HDLDYGDTTLVDLYDNAVARFGD------RPALD-FFGATT--TYAELGKQVRRAAAGLR 75

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT---LGPGAVNFILDH-A 147
           A G  PG RV I   NCPQ + A  A   L  + V   PLY       P       DH A
Sbjct: 76  ALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFE-----DHGA 130

Query: 148 EIDFVF----------VQDKKVKELLSPDCRSA----QRLRVMVCFTSLTAEQKEMAVQT 193
            +  V+           +   ++ ++S +  +A    QRL + +   +L   +  +   T
Sbjct: 131 RVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL---T 187

Query: 194 GIKP--YSWDEFLHLGKVNEMEILP---PQPFNICTIMYTSGTSGDPKGVVLTHETI-AT 247
           G  P    W+  +      +   +    P P ++  I+YTSGT+G PKG  LTH  + A 
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247

Query: 248 FVSG---VDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLN 302
              G   V    D         +  L+ LP+ H   L   +       G  V     D++
Sbjct: 248 AAQGKAWVPGLGDG-------PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDID 300

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREA 362
            + D + +  PT L GVP ++EKI    + A E    L                      
Sbjct: 301 LILDAMKKHPPTWLPGVPPLYEKI---AEAAEERGVDLSG-------------------- 337

Query: 363 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPT 421
                              +R   SG   L    VE + ++T    LV+GYGLTET  P 
Sbjct: 338 -------------------VRNAFSGAMALPVSTVELWEKLTG-GLLVEGYGLTET-SPI 376

Query: 422 TVCFPDEMCMVGT---AGPVSV---YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 475
            V  P     +      G V V    +E+R+ + PE     + D   GE+ VRG  +F G
Sbjct: 377 IVGNP-----MSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKG 430

Query: 476 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 535
           Y+  P+ T +S +DGWF TGD+  +  +G ++I+DR K LI I+ G  V    +E V   
Sbjct: 431 YWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELI-ITGGFNVYPAEVEEVLRE 489

Query: 536 APIIEDIWVYG---DSLKSMLVAVVVPC------EEDTKKWAYSN 571
            P +ED  V G   +     +VA VV         E  + +   +
Sbjct: 490 HPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREH 534

Length = 573

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  128 bits (324), Expect = 1e-31
 Identities = 124/482 (25%), Positives = 193/482 (40%), Gaps = 97/482 (20%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TYK+++E V ++ + L      + G R+ I   N  +++  + A   +  I VPL   L 
Sbjct: 29  TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + F L  +    +FV+       LS    S   ++ ++  TSL   + E        
Sbjct: 89  ENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY--VQRVISITSLK--EIEDRKIDNFV 144

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
             +                    F IC   YTSGT+G PKG VLT E +  F + ++   
Sbjct: 145 EKNESA----------------SFIIC---YTSGTTGKPKGAVLTQENM--FWNALN--- 180

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
           + F   +T+ D  +  LPL HI                    G +      L    PTL 
Sbjct: 181 NTFAIDLTMHDRSIVLLPLFHI--------------------GGIG-----LFAF-PTLF 214

Query: 317 AG----VPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG----YKQREASPLADL 368
           AG    VPR FE       KAL  +   +  +          MG    ++        + 
Sbjct: 215 AGGVIIVPRKFEP-----TKALSMIEKHKVTVV---------MGVPTIHQALINCSKFET 260

Query: 369 LAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLV-QGYGLTETCGPTTVCFP 426
              + V        R   +GGAP   E + EF+      FL  QG+G+TET  PT     
Sbjct: 261 TNLQSV--------RWFYNGGAPCPEELMREFIDR---GFLFGQGFGMTET-SPTVFMLS 308

Query: 427 DEMCM--VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 484
           +E     VG+ G   ++ +  L +        + +   GE+ +RG  +   Y+  PD T 
Sbjct: 309 EEDARRKVGSIGKPVLFCDYELID-ENKNKVEVGE--VGELLIRGPNVMKEYWNRPDATE 365

Query: 485 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 544
           E+I DGW  TGD+ ++  +G V I+ RKK +I IS GE +    +E V      + ++ V
Sbjct: 366 ETIQDGWLCTGDLARVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAV 424

Query: 545 YG 546
            G
Sbjct: 425 VG 426

Length = 496

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  124 bits (313), Expect = 2e-30
 Identities = 95/362 (26%), Positives = 137/362 (37%), Gaps = 83/362 (22%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH   A  +    L        +  DDV L+ LPL HI   
Sbjct: 83  TAAILYTSGTTGPPKGVLLTH---AQLLFAARLAARLLG--LRPDDVLLTPLPLFHI--- 134

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVF-EKIHEGIKKALEELRPL 340
                               NA       +   LL G   V   +      +  +++R  
Sbjct: 135 --------------------NAQ---AYSVYAALLVGATLVLLPRFSAS--RFWDQVRKH 169

Query: 341 RRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFL 400
              +F+ L  A   +  KQ  +    D              LR V     P +     F 
Sbjct: 170 GATVFNLLG-AMAAILMKQPPSPDDRD------------HPLRFVFGAPLP-AAIWPAFE 215

Query: 401 RVTCCAF---LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-----EEVPEM 452
                 F   LV+GYG+TET  P     P +    G+ G      E+R+      EVP  
Sbjct: 216 E----RFGVKLVEGYGMTETGVPIIA--PGDPAPPGSCGRPRPGVEVRIVDEDGREVP-- 267

Query: 453 GYSPLDDPPCGEVCVR---GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII 509
                     GE+ VR      +F GYY  P+ T ++  +GWFHTGD G+   +G +  +
Sbjct: 268 -----PGEV-GELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTGDRGRRDEDGFLYFV 321

Query: 510 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS-------MLVAVVVPCEE 562
           DRKK+ I+   GE ++   +E      P + +  V    + S         V V+ P E 
Sbjct: 322 DRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAVVA--VPSELGEDEVKAVVVLRPGET 378

Query: 563 DT 564
             
Sbjct: 379 LD 380

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  125 bits (316), Expect = 2e-30
 Identities = 109/556 (19%), Positives = 177/556 (31%), Gaps = 129/556 (23%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           LN A +     ++    +       F           TY ++  EV ++ +AL+  G   
Sbjct: 8   LNLALNALDRHLEADRPDDTAII--FDGEDGLFREL-TYGDLRREVARLANALKDLGGVK 64

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
           G RV IY  N P+ V A+ A   +  I   +   L   AV   +       +   D    
Sbjct: 65  GDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADD---- 120

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   + +  + +              V        +DE +        E    +P 
Sbjct: 121 -------GTFRNGKEIA-LLEDADAVLSSVVVVPRLGLWYDEAVE----KASEKFEFEPL 168

Query: 221 N---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV--------- 268
                  ++YTSGT+G PKG+V +H                 +      D          
Sbjct: 169 PADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT--AKFHGDLLP--GDRFWNSSDPGW 224

Query: 269 -----YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL----KPTLLAGV 319
                Y  F PLA              GA+   Y G      + L E     K T+    
Sbjct: 225 IYGLWYSVFSPLAS-------------GATTVLYDGRPFYSPERLWEALEKYKVTIFGTS 271

Query: 320 PRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLG 379
           P                                M +G                  +    
Sbjct: 272 PTFLR--------------------------RLMKLG----------------LGEPYDL 289

Query: 380 GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 438
             LR++ S G PL+ E  E F       +++  YG TET        P      G++G  
Sbjct: 290 SSLRVLGSAGEPLNPEAFEWFYSALGV-WILDIYGQTETGMGFIAGRPP--VKNGSSG-- 344

Query: 439 SVYSELRLEEVPEMGYSP--LDD--PPC----GEVCVRGKT--LFSGYYKNPDLTRESII 488
                     +P  GY+   +DD   P     GE+ VR     +   Y+ +P+  +E+  
Sbjct: 345 ----------LPLPGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYF 394

Query: 489 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 546
             W+ TGD  +   +G   +  R  ++IK+S G+ +    +E+V    P + +  V G  
Sbjct: 395 GRWYRTGDWAERDEDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVP 453

Query: 547 DSLK-SMLVAVVVPCE 561
           D  K  +++A VV   
Sbjct: 454 DPGKGQIVLAFVVLAA 469

Length = 528

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  122 bits (309), Expect = 1e-29
 Identities = 75/197 (38%), Positives = 101/197 (51%), Gaps = 15/197 (7%)

Query: 382 LRLVISGGAPLSTEVEEFLRV-TCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 440
           LR++ SG APLS E++E LR       + QGYG+TET   TT+  P +    G+ G +  
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGD-EKPGSVGRLVP 323

Query: 441 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 499
             E ++  V E G   L     GE+CV+G  +  GY  NP+ T+E+I  DGW HTGDIG 
Sbjct: 324 NVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGY 381

Query: 500 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSML-VAV 556
              +G   I+DRKK LIK  +G  V    LE V    P + D  V G  D +   L  A 
Sbjct: 382 FDEDGNFYIVDRKKELIKY-KGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAY 440

Query: 557 VVP------CEEDTKKW 567
           VV        E++ K +
Sbjct: 441 VVLKPGSKLTEQEVKDY 457

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  115 bits (290), Expect = 5e-27
 Identities = 141/544 (25%), Positives = 205/544 (37%), Gaps = 121/544 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++ + V ++   L A G +PG RVGI+  NC +W+    A   +  I V +      
Sbjct: 47  TWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRA 106

Query: 138 GAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQ----------RLRVMVCF 179
             + + L  + + +V   D          ++ELL P     Q           LR +V  
Sbjct: 107 SELEYALGQSGVRWVICADAFKTSDYHAMLQELL-PGLAEGQPGALACERLPELRGVVSL 165

Query: 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--------PPQPFNICTIMYTSGT 231
               A               W E    G+    E L           P NI    YTSGT
Sbjct: 166 AP--APPPGFLA--------WHELQARGETVSREALAERQASLDRDDPINI---QYTSGT 212

Query: 232 SGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-F 288
           +G PKG  L+H  I    +     L L +  D++ V       +PL H    V+      
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGLTE-HDRLCVP------VPLYHCFGMVLANLGCM 265

Query: 289 RRGASVGY--YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346
             GA + Y     D  A    + E + T L GVP +F          + EL   +R  FD
Sbjct: 266 TVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF----------IAELDHPQRGNFD 315

Query: 347 ALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-- 404
                                              LR  I  GAP   EV    RV    
Sbjct: 316 L--------------------------------SSLRTGIMAGAPCPIEVMR--RVMDEM 341

Query: 405 -CAFLVQGYGLTETCGPTTVCFPDEMC--MVGTAGPVSVYSELRLEEVPEMGYSPLDDPP 461
             A +   YG+TET   +      +     V T G    + E+++ + P+    P  +  
Sbjct: 342 HMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRGE-- 398

Query: 462 CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ 520
            GE+C RG ++  GY+ NP+ T ESI  DGW HTGD+  +   G V+I+ R K++I I  
Sbjct: 399 IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI-IRG 457

Query: 521 GEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE---EDTKKWA-YSNGHAGS 576
           GE +    +E      P + D+ V+G           VP E   E+   W     GHA S
Sbjct: 458 GENIYPREIEEFLFTHPAVADVQVFG-----------VPDEKYGEEIVAWVRLHPGHAAS 506

Query: 577 FLEL 580
             EL
Sbjct: 507 EEEL 510

Length = 558

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  113 bits (285), Expect = 2e-26
 Identities = 131/511 (25%), Positives = 198/511 (38%), Gaps = 113/511 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++E+ + V  +  AL   G   G RV I   N  ++VE++ A N L  I VP+   L P
Sbjct: 44  TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F++       V  +       ++   R    L   V     +++            
Sbjct: 104 PEIAFLVSDCGAHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSD------------ 149

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI-----CTIMYTSGTSGDPKGVVLTHETIAT----- 247
              D  L    +         P +I       IMYTSGT+G PKG VLTH  +       
Sbjct: 150 ---DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTC 206

Query: 248 -FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
              +G D             DV    +PL HI             A +G           
Sbjct: 207 LRTNGAD----------INSDVGFVGVPLFHI-------------AGIG----------- 232

Query: 307 DLMELKPTLLAGVPRVFEKIHE-GIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPL 365
               + P LL G P V   I+  G     + L  L        K+  + +   Q +A   
Sbjct: 233 ---SMLPGLLLGAPTV---IYPLGAFDPGQLLDVLEAE-----KVTGIFLVPAQWQA--- 278

Query: 366 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF----LVQGYGLTETCGPT 421
             + A ++ + R    LR++  G AP S  +   LR     F    ++  +G TE   P 
Sbjct: 279 --VCAEQQARPR-DLALRVLSWGAAPASDTL---LRQMAATFPEAQILAAFGQTEM-SPV 331

Query: 422 TVCF---PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRGKT 471
           T C     D +  +G+ G V          +P +    +D+     P    GE+  R  T
Sbjct: 332 T-CMLLGEDAIRKLGSVGKV----------IPTVAARVVDENMNDVPVGEVGEIVYRAPT 380

Query: 472 LFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 531
           L SGY+ NP+ T E+   GWFH+GD+ +    G V ++DRKK++I IS GE +    +EN
Sbjct: 381 LMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEVEN 439

Query: 532 VYCVAPIIEDIWVYG---DSLKSMLVAVVVP 559
           V    P I ++ V G   +    + VAV   
Sbjct: 440 VLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470

Length = 542

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  110 bits (278), Expect = 4e-26
 Identities = 110/469 (23%), Positives = 162/469 (34%), Gaps = 113/469 (24%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TY+E+ E   ++   LRA+ G  PG RV +      + V A+ A        VPL D   
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPL-DPAY 59

Query: 137 PGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
           P   + FIL+ A    +         L          L   +   +L             
Sbjct: 60  PAERLAFILEDAGARLLLTDSALASRL--AGLVLPVILLDPLELAALDDAPAPPPPDA-- 115

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
                               P  P ++  ++YTSG++G PKGVV+TH ++   ++ +   
Sbjct: 116 --------------------PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +  DD  L F  L+   D           ASV               E+   L
Sbjct: 156 YG-----LDPDDRVLQFASLSF--D-----------ASV--------------EEIFGAL 183

Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASP-LADLLAFRKV 374
           LAG   V     +  +     L  L         +  +N        +P L  LLA    
Sbjct: 184 LAGATLVV-PPEDEERDDAALLAALIAE----HPVTVLN-------LTPSLLALLAAALP 231

Query: 375 KARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG 433
            A     LRLVI GG  L+   V+ +      A L+  YG TET   T            
Sbjct: 232 PALAS--LRLVILGGEALTPALVDRWRARGPGARLINLYGPTET---TVWS--------- 277

Query: 434 TAGPVSVYSELRLEEVPEMGYSPLDDPPC---------------GEVCVRGKTLFSGYYK 478
           TA  V      R   VP +G  PL +                  GE+ + G  +  GY  
Sbjct: 278 TATLVDPDDAPRESPVP-IGR-PLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLN 335

Query: 479 NPDLTRESIIDGWF---------HTGDIGQILPNGVVKIIDRKKNLIKI 518
            P+LT E  +   F          TGD+ + LP+G ++ + R  + +KI
Sbjct: 336 RPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI 384

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  106 bits (267), Expect = 2e-24
 Identities = 107/367 (29%), Positives = 143/367 (38%), Gaps = 87/367 (23%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276
           P P     I+YTSGT+G PKGVVL+   IA     +D   + ++   T DDV +  LPL 
Sbjct: 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAA---DLDALAEAWQ--WTADDVLVHGLPLF 179

Query: 277 HILDRVIEEY-FFRRGASV---------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
           H+   V+      R G             Y            +    TL  GVP V+ +I
Sbjct: 180 HVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPTVWSRI 230

Query: 327 HEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 386
               + A             AL+ A                               RL++
Sbjct: 231 AADPEAA------------RALRGA-------------------------------RLLV 247

Query: 387 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL 446
           SG A L   V + L        V+ YG+TET   T     D     G  G      E RL
Sbjct: 248 SGSAALPVPVFDRLAALTGHRPVERYGMTETL-ITLSTRADGERRPGWVGLPLAGVETRL 306

Query: 447 EEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNG 504
             V E G   P D    GE+ VRG TLF GY   PD T  +   DGWF TGD+  + P+G
Sbjct: 307 --VDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDG 364

Query: 505 VVKIIDRKK-NLIK-----ISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 555
           + +I+ R+  +LIK     I  GE      +E      P + +  V G   D L   +VA
Sbjct: 365 MHRIVGRESTDLIKSGGYRIGAGE------IETALLGHPGVREAAVVGVPDDDLGQRIVA 418

Query: 556 VVVPCEE 562
            VV  ++
Sbjct: 419 YVVGADD 425

Length = 471

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  104 bits (262), Expect = 2e-23
 Identities = 122/514 (23%), Positives = 193/514 (37%), Gaps = 116/514 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   +++Y E+ EE  +I++ LRA G +PG  V +       +V A  AC     + VP+
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMA 190
                         + E +    + + + ELL SP   +   L   +      A  + + 
Sbjct: 95  ----AVPPT-----YDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEALR 145

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
           V    +  S      L         P +P +   ++ TSG++G PK VVLTH  I     
Sbjct: 146 VLAIEELRSAPPDAPL--------HPARPDDPALLLLTSGSTGVPKCVVLTHRNI----- 192

Query: 251 GVDLFLDQFEDKMTV-----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
                L +    + V     DDV L+++PL H+               +   H     LR
Sbjct: 193 -----LARSAGTVQVNGFTPDDVSLNWMPLDHV-------------GGIVMLH-----LR 229

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLA--------WM-NMG 356
           D            V    ++IH      L +  PLR      L L         W  N  
Sbjct: 230 D------------VYLGCQQIHVPTDYILAD--PLR-----WLDLIDRYRVTITWAPNFA 270

Query: 357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTC-----CAFLVQ 410
           +       L D L   + ++     LR +I+ G  +  +    FL +          +  
Sbjct: 271 FAL-----LNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRP 325

Query: 411 GYGLTETCGPTTVC--FPDEMCMVGTA-----GPVSVYSELRLEEVP--EMGY------- 454
            +G++ETC   T    F       G       GP+   +    E V   E+G        
Sbjct: 326 AFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAI 385

Query: 455 -------SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 506
                  + L +   G + VRG T+ SGYY+NP+   E+   DGWF TGD+G +  +G +
Sbjct: 386 RIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL-HDGRL 444

Query: 507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 540
            I  R+K++I I+   Y   E +E      P +E
Sbjct: 445 TITGREKDMIIINGVNYYNHE-IEAAVEQVPGVE 477

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  103 bits (257), Expect = 3e-23
 Identities = 121/490 (24%), Positives = 195/490 (39%), Gaps = 84/490 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E ++ +LQ    L A G   G  V +   N   ++E   A + L  + +P+   L  
Sbjct: 29  SYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAA 88

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V +IL  A    + V ++                     F ++ A +    V      
Sbjct: 89  DEVAYILGDAGAKLLLVDEE---------------------FDAIVALETPKIV-IDAAA 126

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLF 255
            +    L  G +         P ++  +MYTSGT+  PKGV+ ++  +   +    + L 
Sbjct: 127 QADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALG 186

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
           L       T  +  L   PL H+        F   G +V +  G L   R+         
Sbjct: 187 L-------TASERLLVVGPLYHV------GAFDLPGIAVLWVGGTLRIHRE--------- 224

Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASP--LADLLAFRK 373
                  F+   E +  A+E  R         L  AWM         +P  L+ +L    
Sbjct: 225 -------FDP--EAVLAAIERHR---------LTCAWM---------APVMLSRVLTVPD 257

Query: 374 VKARLGGRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETC-GPTTVCFPDEMCM 431
                   L   I GG     + + +F RV   A  +  YGLTETC G T +    E+  
Sbjct: 258 RDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEK 317

Query: 432 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 491
           +G+ G    + E+R+ +     + P +    GE+C+RG  +  GY+K+P+ T E+    W
Sbjct: 318 IGSTGRALAHVEIRIAD-GAGRWLPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGDW 374

Query: 492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DS 548
           F +GD+G +   G + + DRKK++I IS GE +A   +E V    P + +  V G   D 
Sbjct: 375 FRSGDVGYLDEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVIGVHDDR 433

Query: 549 LKSMLVAVVV 558
               + AVVV
Sbjct: 434 WGERITAVVV 443

Length = 497

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  103 bits (258), Expect = 5e-23
 Identities = 64/177 (36%), Positives = 88/177 (49%), Gaps = 24/177 (13%)

Query: 372 RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFP-DEM 429
              K  L   +R V++ GAP    V    ++    F +   YGLTET GP TVC    E 
Sbjct: 274 EADKLPLPRPVR-VMTAGAPPPPAV--IKKMEELGFEVTHVYGLTETYGPITVCEWKPEW 330

Query: 430 CMVGTAGPVSVYSELR---------LEEV----PEMGYS-PLDDPPCGEVCVRGKTLFSG 475
                A P    + L+         LEEV    PE     P D    GE+ +RG T+  G
Sbjct: 331 ----DALPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKG 386

Query: 476 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 532
           YYKNP+ T E+   GWFH+GD+  + P+G ++I DR K++I IS GE ++   +E V
Sbjct: 387 YYKNPEATEEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDII-ISGGENISSIEVEGV 442

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  102 bits (256), Expect = 5e-23
 Identities = 120/498 (24%), Positives = 184/498 (36%), Gaps = 123/498 (24%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++++EV  +   LRA G +   R+ +   N   WV A  AC    ++C+P+      
Sbjct: 4   SYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                +L+ A  D +   D        PD  SA                      T    
Sbjct: 61  QQTQHLLNDAGADLLISDD--------PDAASALH--------------------TPFAT 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D ++ L            P     I YTSG++G PKGV L+   + T    V   L 
Sbjct: 93  LGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALET----VAQSLA 145

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGA--------SVGYYHG----DLNAL 304
           +    +   + +L  LPLA +L+ +   Y     GA         +G   G    D    
Sbjct: 146 EAIA-ILEPERHLCLLPLATLLENIAGVYAPLLMGATVILVPLAELGL-SGSSGLDPAQF 203

Query: 305 RDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASP 364
              L   +P  L  VP               +L                           
Sbjct: 204 VAALSRWQPHSLILVP---------------QL--------------------------- 221

Query: 365 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE---FLRVTCCAFLVQGYGLTETCGPT 421
           L  L+A  +        LR V  GGA +S  + +    L +     + +GYGL+E     
Sbjct: 222 LMALVAAVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP----VYEGYGLSECASVV 277

Query: 422 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 481
           ++  P      G+ G    + ++ +            D   GE+ VRG +L  GY   P 
Sbjct: 278 SLNTPGAD-RPGSVGKPLPHVQVSIAN----------D---GEILVRG-SLMLGYLGEPP 322

Query: 482 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 541
            T     D W+ TGD+G +   G + I  RKKNLI  S G  V+ E++E+    AP I  
Sbjct: 323 AT-----DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQ 377

Query: 542 IWVYGDSLKSMLVAVVVP 559
             V+GD+ +  LVA++VP
Sbjct: 378 AVVFGDA-QPFLVALIVP 394

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  101 bits (252), Expect = 2e-22
 Identities = 100/339 (29%), Positives = 147/339 (43%), Gaps = 64/339 (18%)

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY--LSFLPLA 276
           P ++  + YT GT+G PKG +LTH  + + VS  D++      + T  DV   +  LPL 
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVW--GKPSRATRGDVERVICVLPLF 248

Query: 277 HILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
           HI    VI     RRG  +  +   D+ A+  D+ E + T+  GVP ++         AL
Sbjct: 249 HIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMW--------IAL 300

Query: 335 EELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 394
                L +R   +L                                      SGGAPL  
Sbjct: 301 ANDPSLEKRDLSSLATIG----------------------------------SGGAPLPV 326

Query: 395 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 454
           EV  F        L  G+G+TETC P T   P+     G   P S+   L L  + E+  
Sbjct: 327 EVANFFERKTGLKLKSGWGMTETCSPGTGHPPE-----GPDKPGSI--GLMLPGI-ELDV 378

Query: 455 SPLDDP----PCGEVC---VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 507
             LDDP    P GEV    +RG  +  GY+  P+ + E+ +   F TGDIG +  +G   
Sbjct: 379 VSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFF 438

Query: 508 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
           ++DRKK++I IS G  V  + +E      P ++++ V G
Sbjct: 439 LVDRKKDMI-ISGGFNVYPQMIEQAIYEHPGVQEVIVIG 476

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  101 bits (252), Expect = 3e-22
 Identities = 141/637 (22%), Positives = 214/637 (33%), Gaps = 173/637 (27%)

Query: 57  GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116
           GNR      FVDG                VL + + L   G   G  V I   N   ++E
Sbjct: 29  GNRRRTGHEFVDG----------------VLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72

Query: 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF--------VFVQDKKVK----ELLS 164
            + A      I  PL         N+     E           + V D+       EL +
Sbjct: 73  WLLAVACAGGIVAPL---------NYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQN 123

Query: 165 PDCRSAQRLRVMVCFTS-------LTAEQKEMAVQTGIKP----YSWDEFLHLGKVNEME 213
               S    +V +   S        +    EM  Q  +      Y+W             
Sbjct: 124 DRLPSL-MWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAW------------- 169

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-----DDV 268
                P +   I +TSGT+G PKGV ++H  +            Q   K+ +     DDV
Sbjct: 170 ----APDDAVLICFTSGTTGRPKGVTISHSALIV----------QSLAKIAIVGYGEDDV 215

Query: 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
           YL   PL HI                    G L++    LM        G   V      
Sbjct: 216 YLHTAPLCHI--------------------GGLSSALAMLM-------VGACHVL----- 243

Query: 329 GIKKALEELRPLRRRIFDALKLAWMNMGYKQREASP-------LADLLAF-RKVKARLGG 380
            + K            FDA K A   +  KQ   +        +ADL++  RK       
Sbjct: 244 -LPK------------FDA-KAALQAI--KQHNVTSMITVPAMMADLISLTRKSMTWKVF 287

Query: 381 R-LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 438
             +R +++GG  LS+  + +  ++   A L   YG+TE C   T     +  +      +
Sbjct: 288 PSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTL 347

Query: 439 SVYSELRLEEVP--------------EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 484
              ++ +   V               E+     +    G +  RG  +  GY+     T 
Sbjct: 348 QTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNSETA 407

Query: 485 ESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 543
             +  DGW  TGDIG I   G + +I R  + IK + GE V  E +E V    P +  + 
Sbjct: 408 SVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAVLSQHPGVASVV 466

Query: 544 VYGDSLKSMLVAVVVPCEEDTKKWAYSN---GHAGSFLELCSLVQLQNYILSELKNAAER 600
           V G    S L  +VV C      W +S+    +A   L L S           L++    
Sbjct: 467 VVG-VPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSS---------ETLRHHCRE 516

Query: 601 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 637
             L  F+  K  +   +PF      +T T K +R+++
Sbjct: 517 KNLSRFKIPKLFVQWRKPFP-----LTTTGKIRRDEV 548

Length = 563

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  100 bits (251), Expect = 4e-22
 Identities = 132/500 (26%), Positives = 198/500 (39%), Gaps = 84/500 (16%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+   V ++   L   G   G  V     N  ++     AC+ +  +  PL      
Sbjct: 57  TYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRE 116

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++F+L HAE   V V  K  +         A+RLR            + + V  G   
Sbjct: 117 RELSFMLKHAESK-VLVVPKTFRGFDHA--AMARRLR------PELPALRHVVVVGGDGA 167

Query: 198 YSWDEFLHLGKVNEME-----ILP---PQPFNICTIMYTSGTSGDPKGVVLTHET----I 245
            S++  L +    E E     IL    P P ++  ++YTSGT+G+PKGV+ T  T    I
Sbjct: 168 DSFEALL-ITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANI 226

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
             +   + L           DDV L   P+AH                 G+ +G      
Sbjct: 227 VPYAERLGL---------GADDVILMASPMAHQ---------------TGFMYG------ 256

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASP- 364
              + + P +L G   V + I +   +A E +R           + +  M      ++P 
Sbjct: 257 ---LMM-PVML-GATAVLQDIWD-PARAAELIRTEG--------VTFT-MA-----STPF 296

Query: 365 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 424
           L DL    K   R    LR  +  GAP+   + E  R    A +V  +G+TE    T   
Sbjct: 297 LTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTK 356

Query: 425 F--PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 482
              PDE     T G      E+R   V +   +PL     G + VRG + F GY K P L
Sbjct: 357 LDDPDER-ASTTDGCPLPGVEVR---VVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQL 412

Query: 483 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 542
                 DGWF TGD+ +I  +G ++I  R K++I I  GE + +  +E +    P I  +
Sbjct: 413 NGTDA-DGWFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEALLYRHPAIAQV 470

Query: 543 WV--YGDS-LKSMLVAVVVP 559
            +  Y D  L     A VVP
Sbjct: 471 AIVAYPDERLGERACAFVVP 490

Length = 547

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 98.6 bits (245), Expect = 1e-21
 Identities = 135/511 (26%), Positives = 209/511 (40%), Gaps = 79/511 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYD- 133
           T+   +++V +  + L+  G E G RV I   NCPQ V           I V   PLY  
Sbjct: 51  TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110

Query: 134 -----TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS------L 182
                 L       IL    +D VF +   V+     +     R+   + F        +
Sbjct: 111 RELEYQLHDSGAKVILC---LDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-----LPPQPFN-ICTIMYTSGTSGDPK 236
             +Q  + V+      S  E +HL    E E+     +P  P N +  + YT GT+G PK
Sbjct: 168 QKKQSNLVVKV-----SESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPK 222

Query: 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296
           GV+LTH+ +   VS   + +    +    ++V L  LP  H+                  
Sbjct: 223 GVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHV------------------ 261

Query: 297 YHGDLNALRDDLMELKPTLLAGVPRV-FEKIHEGIKKALEELRPLRRRIFDALKLAWMNM 355
            +G    +   +M+    +L  +P+   + + E IKK    L P    I+ AL    +N 
Sbjct: 262 -YGMTAVMNLSIMQGYKMVL--IPKFDMKMVFEAIKKHKVTLFPGAPTIYIAL----LN- 313

Query: 356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 415
                  SPL        +K      +R  ISG APL  EV+E         LV+GYGLT
Sbjct: 314 -------SPL--------LKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLT 358

Query: 416 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 475
           E+   T   F  E  + G+ G     +E  +  + E G   L     GE+ V+G  +  G
Sbjct: 359 ESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQIMKG 416

Query: 476 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 535
           Y+  P+ T   + DGW HTGD+G +  +G   + DRKK++I ++ G  V    +E V   
Sbjct: 417 YWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMI-VASGFNVYPREVEEVLYE 475

Query: 536 APIIEDIWVYG--DSLKSMLVAVVVPCEEDT 564
              ++++   G  D  +   V   V  +E T
Sbjct: 476 HEKVQEVVTIGVPDPYRGETVKAFVVLKEGT 506

Length = 563

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 97.5 bits (243), Expect = 3e-21
 Identities = 126/521 (24%), Positives = 188/521 (36%), Gaps = 92/521 (17%)

Query: 59  RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118
                RP +   FG   W TY E          AL A+G + G RV +   N  ++++  
Sbjct: 32  ERYPDRPLL--VFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVF 88

Query: 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178
             C  L  I VP+   L    +  IL ++    + V+   +  L + D        V   
Sbjct: 89  LGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW-- 146

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP---QPFNICTIMYTSGTSGDP 235
              L      ++V  G   +S      L         P    QP +   I+YTSGT+G  
Sbjct: 147 ---LLDAPASVSVPAG---WSTAPLPPLD-----APAPAAAVQPGDTAAILYTSGTTGPS 195

Query: 236 KGVVLTHETIATFV-----SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 290
           KGV   H   A F      S  DL +         DDV  + LPL H             
Sbjct: 196 KGVCCPH---AQFYWWGRNSAEDLEI-------GADDVLYTTLPLFHT------------ 233

Query: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKL 350
                      NAL          LLAG   V E             R      + A++ 
Sbjct: 234 -----------NALN----AFFQALLAGATYVLEP------------RFSASGFWPAVRR 266

Query: 351 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQ 410
               + Y       +  LL+    ++    R+R+ +  G P +     F R      L+ 
Sbjct: 267 HGATVTYLLGAMVSI--LLSQPARESDRAHRVRVALGPGVP-AALHAAF-RERFGVDLLD 322

Query: 411 GYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK 470
           GYG TET     V    +    G+ G ++   E R+  V E     L D   GE+ +R  
Sbjct: 323 GYGSTETNFVIAVTHGSQ--RPGSMGRLAPGFEARV--VDEHD-QELPDGEPGELLLRAD 377

Query: 471 TLF---SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE 527
             F   +GY+  P+ T E+  + WFHTGD      +G  + +DR K+ I+  +GE ++  
Sbjct: 378 EPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENISSF 436

Query: 528 YLENVYCVAPIIEDIWVYGDSLKSML----VAVVVPCEEDT 564
            +E V    P +    V+   + S L    V   V   + T
Sbjct: 437 EVEQVLLSHPAVAAAAVF--PVPSELGEDEVMAAVVLRDGT 475

Length = 542

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.0 bits (242), Expect = 5e-21
 Identities = 92/313 (29%), Positives = 139/313 (44%), Gaps = 57/313 (18%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD--VYLSFL 273
              P ++  + YT GT+G  KG  L H  I   V  ++ +L    +K    D   ++  L
Sbjct: 200 KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL 259

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PL HI    +          +G   G  N            +L   PR        I   
Sbjct: 260 PLYHIFALTV-------CGLLGMRTGGRN------------ILIPNPR-------DIPGF 293

Query: 334 LEELRPLRRRIFDALKL---AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 390
           ++EL+  +  IF A+     A +N        +P  D L F K+    GG       G A
Sbjct: 294 IKELKKYQVHIFPAVNTLYNALLN--------NPDFDKLDFSKLIVANGG-------GMA 338

Query: 391 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-PV-SVYSELRLE 447
                 E +L +T C  + +GYGL+ET  P   C P D     GT G P+ S    +R +
Sbjct: 339 VQRPVAERWLEMTGCP-ITEGYGLSET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRDD 396

Query: 448 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 506
           +  ++   PL +P  GE+C+RG  + +GY+  PD T + +  DG+F TGD+G +   G  
Sbjct: 397 DGNDL---PLGEP--GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYT 451

Query: 507 KIIDRKKNLIKIS 519
           KI+DRKK++I +S
Sbjct: 452 KIVDRKKDMILVS 464

Length = 557

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 95.3 bits (238), Expect = 8e-21
 Identities = 86/363 (23%), Positives = 140/363 (38%), Gaps = 73/363 (20%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSG++G PKGV ++H  +A+F+  +    D     +T  DV+ +  P          
Sbjct: 102 ILFTSGSTGKPKGVQISHANLASFLDWMVEDFD-----LTEGDVFSNQAPF--------- 147

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
             F            DL+     + +L P L +G     +P+      E I   L     
Sbjct: 148 -SF------------DLS-----VFDLFPALASGATLYVIPK------EQIADPLALFEF 183

Query: 340 LRRRIFDALKLA-WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VE 397
           L+        L  W+++       S  + LL  R++       LR  +  G  L  +  +
Sbjct: 184 LKE-----HGLTVWVSV------PSFASLLLLSRELNPESLPSLRTFLFCGEVLPKKLAK 232

Query: 398 EFLRVTCCAFLVQGYGLTETCGPTT-VCFPDEMCMVGTAGPV---SVYSELRLEEVPEMG 453
              R    A ++  YG TE     T      E   +    P+        LR   + E G
Sbjct: 233 ALRRRFPNARIINLYGPTEATVAVTAYEVTPEP--LSRNEPLPIGYPKPGLRALILDEDG 290

Query: 454 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTGDIGQILPNGVVKII 509
             P+     GE+ + G  +  GY  NP+ T ++        W+ TGD+  +  +G++  +
Sbjct: 291 -RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYL 349

Query: 510 DRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVPCE--EDT 564
            RK   IK+  G  + LE +E      P +E+   + V        LVA VV  E   DT
Sbjct: 350 GRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALDT 408

Query: 565 KKW 567
           K  
Sbjct: 409 KAL 411

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 56/197 (28%), Positives = 86/197 (43%), Gaps = 24/197 (12%)

Query: 381 RLRLVISGGAPLSTEV----EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGT 434
           RLR + S  APL   V    E+   V     +++ YG+TE         P    +   G+
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFGVP----VLEAYGMTEAAHQIA-SNPLPPLVRKPGS 173

Query: 435 AGPVSVYSELRLEEVPEMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF 492
            G  +        EV  +     PL     GE+ +RG  + +GY  NP+  RE+  DGWF
Sbjct: 174 VGRPAG------VEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWF 227

Query: 493 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSL 549
            TGD+G +  +G + +  R K LI    GE ++   +E V    P + +  V+G   +  
Sbjct: 228 RTGDLGYLDEDGYLFLTGRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELY 286

Query: 550 KSMLVAVVVPCEEDTKK 566
              + A VV    D+K 
Sbjct: 287 GEEVAAAVVL-RADSKV 302

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 95.6 bits (238), Expect = 1e-20
 Identities = 96/326 (29%), Positives = 145/326 (44%), Gaps = 55/326 (16%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           PQ  ++  + YT GT+G  KG +LTH   +A  +    L      +     ++ ++ LPL
Sbjct: 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC---EILIAPLPL 260

Query: 276 AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335
            HI       Y F          G+ N L  +            PR    +       ++
Sbjct: 261 YHI-------YAFTFHCMAMMLIGNHNILISN------------PRDLPAM-------VK 294

Query: 336 ELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 395
           EL   +   F  L   ++           L +  AFRK+       L+L +SGG  L   
Sbjct: 295 ELGKWKFSGFVGLNTLFV----------ALCNNEAFRKLDF---SALKLTLSGGMALQLA 341

Query: 396 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEVPEM 452
             E +  VT CA   +GYG+TET  P     P +   VGT G PV S   ++  ++  E+
Sbjct: 342 TAERWKEVTGCAIC-EGYGMTET-SPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDGNEL 399

Query: 453 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR 511
              PL +   GE+CV+G  +  GY++ P+ T E +  DGW  TGDI  I  +G ++I+DR
Sbjct: 400 ---PLGEV--GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDR 454

Query: 512 KKNLIKISQGEYVALEYLENVYCVAP 537
           KK++I +S G  V    LE+V    P
Sbjct: 455 KKDMILVS-GFNVYPNELEDVLAALP 479

Length = 562

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 93.9 bits (234), Expect = 2e-20
 Identities = 70/219 (31%), Positives = 97/219 (44%), Gaps = 19/219 (8%)

Query: 365 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 424
           + DLLA  +        L++V  GGA L   V E L+        +GYGLTET   T   
Sbjct: 184 VVDLLAHPRFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFN 243

Query: 425 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 484
            PD         PV   ++ R+ + PE G   L     GE+ VRG  +F GY+  P+ T 
Sbjct: 244 PPDRPKPQCLGIPVF-GTDARVID-PETG-EELPPGEEGEIVVRGPQVFKGYWNRPEATA 300

Query: 485 ESII----DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 540
           ES I      +F TGD+G I   G    +DR K +I +S G  V    +E +    P + 
Sbjct: 301 ESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAVL 359

Query: 541 DIWVYG--DSLKSMLV-AVVVP--------CEEDTKKWA 568
           ++ V G  D  +  +V A VV          EED  +W 
Sbjct: 360 EVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWC 398

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 93.8 bits (234), Expect = 3e-20
 Identities = 95/356 (26%), Positives = 139/356 (39%), Gaps = 76/356 (21%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV--DDVYLSFL 273
             +P +   I++TSG+ G PKGVVL+H  +   +       DQ    + +  +DV L  L
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANI-------DQIAAVIDLNTEDVLLGAL 193

Query: 274 PLAHILDRVIEEYF-FRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHE 328
           PL H     +        G  V YY   L+A +  + EL    K T+L G P        
Sbjct: 194 PLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKK--IAELIRDYKATILCGTPTFLRGYAR 251

Query: 329 GIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 388
                 E+   LR  +  A KL          EA+           + + G R+      
Sbjct: 252 NAHP--EDFSSLRLVVAGAEKL---------PEAT-------RELFEEKFGIRI------ 287

Query: 389 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE 448
                               ++GYG TE     +V  P      GT G      E+R+  
Sbjct: 288 --------------------LEGYGATECSPVISVNTPMGNK-PGTVGRPLPGIEVRIVS 326

Query: 449 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DGWFHTGDIGQILPNGVV 506
                +  L     G + VRG  + SGY  N + T E  +  DGW+ TGDIG+I  +G +
Sbjct: 327 PE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFL 384

Query: 507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEE 562
            I+ R K   KI  GE V+L  +E       ++ +I        S+  AV VP E+
Sbjct: 385 TIVGRLKRFAKIG-GEMVSLTAVEE------LLSEIL----PEDSLHAAVEVPDEK 429

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 93.9 bits (234), Expect = 4e-20
 Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 34/194 (17%)

Query: 382 LRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV-------- 432
           +R+V+SG APL  E+E+  R     A L QGYG+TE  GP        MC+         
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEA-GPVL-----AMCLAFAKEPFPV 353

Query: 433 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID 489
             G+ G V   +EL++ + PE G S L     GE+C+RG  +  GY  +P+ T  +I  D
Sbjct: 354 KSGSCGTVVRNAELKIVD-PETGAS-LPRNQPGEICIRGPQIMKGYLNDPEATANTIDKD 411

Query: 490 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL 549
           GW HTGDIG I  +  + I+DR K LIK  +G  VA   LE +    P I D        
Sbjct: 412 GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIAD-------- 462

Query: 550 KSMLVAVVVPCEED 563
                A VVP +++
Sbjct: 463 -----AAVVPMKDE 471

Length = 537

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 93.7 bits (233), Expect = 6e-20
 Identities = 93/361 (25%), Positives = 143/361 (39%), Gaps = 91/361 (25%)

Query: 225 IMYTSGTSGDPKGVVLTHETI----ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +++TSGT G PKGV+LTH  I      + + ++L         T  DV++   PL H   
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNL---------TWQDVFMMPAPLGH--- 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                       + G+ HG           +    L G   V   I          L  L
Sbjct: 240 ------------ATGFLHG-----------VTAPFLIGARSVLLDIF----TPDACLALL 272

Query: 341 RRRIFDALKLAWMNMGYKQREASP-LADLL-AFRKVKARLGGRLRLVISGGAPLSTEVEE 398
            ++     +   M +G     A+P + DLL    K  A L   LR  + GG  +  +V  
Sbjct: 273 EQQ-----RCTCM-LG-----ATPFIYDLLNLLEKQPADLSA-LRFFLCGGTTIPKKV-- 318

Query: 399 FLRVTCC----AFLVQGYGLTETCGPTTVCFPDEMC--MVGTAG------PVSVYSELRL 446
                 C      L+  YG TE+  P  V   D+     + T G       + V  E R 
Sbjct: 319 ---ARECQQRGIKLLSVYGSTESS-PHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEAR- 373

Query: 447 EEVPEMGYSPLDDPPC-GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNG 504
           + +P         P C GE   RG  +F GY   P+LT  ++  +GW+++GD+ ++   G
Sbjct: 374 KTLP---------PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAG 424

Query: 505 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCE 561
            +KI  RKK++I +  GE ++   +E++    P I D  V     + L     A VV   
Sbjct: 425 YIKITGRKKDII-VRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKA 483

Query: 562 E 562
            
Sbjct: 484 P 484

Length = 547

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 91.9 bits (229), Expect = 2e-19
 Identities = 49/128 (38%), Positives = 62/128 (48%), Gaps = 24/128 (18%)

Query: 412 YGLTETCGPTTVC--------FPDE-----MCMVGTAGP----VSVYSELRLEEVPEMGY 454
           YGLTET GP TVC         P +         G   P    V+V     ++ VP    
Sbjct: 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA--- 383

Query: 455 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 514
              D    GE+  RG  +  GY KNP  T E+   GWFHTGD+  + P+G +KI DR K+
Sbjct: 384 ---DGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKD 440

Query: 515 LIKISQGE 522
           +I IS GE
Sbjct: 441 II-ISGGE 447

Length = 545

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 90.1 bits (224), Expect = 2e-19
 Identities = 76/311 (24%), Positives = 120/311 (38%), Gaps = 70/311 (22%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--- 278
           +    +T GT+G PK    +H           L        +   DV L+ LPL H+   
Sbjct: 4   LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSG-----LGPGDVLLNGLPLFHVGGA 58

Query: 279 LDRVIEEYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHE 328
           +   +      RGA+V      G+ +    A+  +  ++    + TLL+ VP V      
Sbjct: 59  IVTGLAP--LARGATVVLPTPSGFRN---PAVVANFWKIVERYRVTLLSAVPTV------ 107

Query: 329 GIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 388
                                               LA LL      A +   LR  ++G
Sbjct: 108 ------------------------------------LAALLQVPLGDADIS-SLRYALTG 130

Query: 389 GAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLE 447
            APL  EV   F  VT    +V+GYG+TE  G + +         G+ G    Y+ +R+ 
Sbjct: 131 AAPLPVEVARRFEAVTGVP-VVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVA 189

Query: 448 EVPEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 505
           ++   G    D  P   G + +RG  +F GY  +       + DGW +TGD+G+I  +G 
Sbjct: 190 KLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTGDLGRIDADGY 249

Query: 506 VKIIDRKKNLI 516
           + +  R K+LI
Sbjct: 250 LWLTGRAKDLI 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 92.0 bits (228), Expect = 2e-19
 Identities = 95/359 (26%), Positives = 147/359 (40%), Gaps = 92/359 (25%)

Query: 224 TIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI 283
           ++ YTSGT+ DPKGVV++H     ++S +   +     +M    VYL  LP+ H      
Sbjct: 190 SLNYTSGTTADPKGVVISHR--GAYLSTLSAIIGW---EMGTCPVYLWTLPMFHCNGWTF 244

Query: 284 E-EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
                 R G SV   H     +  ++     T +  VP VF  + +G             
Sbjct: 245 TWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKG------------- 291

Query: 343 RIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP----LSTEVEE 398
              ++L L+          + P+                   V++GG+P    L  +V+ 
Sbjct: 292 ---NSLDLS--------PRSGPVH------------------VLTGGSPPPAALVKKVQR 322

Query: 399 FLRVTCCAFLV-QGYGLTETCGPTTVC--------FPDEMCM---------VGTAGPVSV 440
                   F V   YGLTE  GP   C         P+   M         +     V V
Sbjct: 323 L------GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDV 376

Query: 441 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 500
            ++   E VP       D    GE+ ++G ++  GY KNP  T E+   GW +TGD+G I
Sbjct: 377 KNKETQESVPR------DGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVI 430

Query: 501 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVP 559
            P+G V+I DR K++I IS GE ++   +ENV         ++ Y   L++ +VA+  P
Sbjct: 431 HPDGHVEIKDRSKDII-ISGGENISSVEVENV---------LYKYPKVLETAVVAMPHP 479

Length = 579

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 90.7 bits (225), Expect = 5e-19
 Identities = 97/341 (28%), Positives = 146/341 (42%), Gaps = 76/341 (22%)

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
            + + L  G+   ++ +P    +I  + YT GT+G  KG +LTH  +   +  V   L Q
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 259 F-EDKMTV----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
              D   +     +V ++ LPL HI       Y F          G+ N L  +      
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHI-------YAFTANCMCMMVSGNHNVLITN------ 292

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIF---DALKLAWMNM-GYKQREASPLADLL 369
                 PR        I   ++EL   R       + L +A M+  G+K  + S      
Sbjct: 293 ------PR-------DIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS------ 333

Query: 370 AFRKVKARLGGRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-D 427
                       L+L  SGG  L     E + ++T C  +V+GYGLTET  P     P  
Sbjct: 334 -----------ALKLTNSGGTALVKATAERWEQLTGCT-IVEGYGLTET-SPVASTNPYG 380

Query: 428 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPC-------GEVCVRGKTLFSGYYKN 479
           E+  +GT G PV           P      +DD          GE+C++G  +  GY++ 
Sbjct: 381 ELARLGTVGIPV-----------PGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQ 429

Query: 480 PDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 519
           P+ T E++  +GWF TGDI  I P+G V+I+DRKK+LI +S
Sbjct: 430 PEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVS 470

Length = 562

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 90.0 bits (224), Expect = 6e-19
 Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 35/242 (14%)

Query: 42  NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
            T  DI   S ++YP    L         FG   W TY E+   V ++ +AL   G + G
Sbjct: 11  QTIGDILRRSARRYPDKTAL--------VFGDRSW-TYAELDAAVNRVAAALLDLGLKKG 61

Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE 161
            RV   G N   +     AC     + VP+   L    + +ILDH+      V       
Sbjct: 62  DRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA---- 117

Query: 162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF- 220
            L+P   +A  L  +            + +     P  W +F    +   +    P    
Sbjct: 118 -LAPTAEAALALLPVDTLIL------SLVLGGREAPGGWLDFADWAEAGSVA--EPDVEL 168

Query: 221 ---NICTIMYTSGTSGDPKGVVLTHET-IATFVSG-VDLFLDQFEDKMTVDDVYLSFLPL 275
              ++  I+YTSGT   PKG +LTH   IA +VS  V          M+ DD+ L  LPL
Sbjct: 169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-------DMSADDIPLHALPL 221

Query: 276 AH 277
            H
Sbjct: 222 YH 223

Length = 523

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 89.5 bits (223), Expect = 1e-18
 Identities = 134/505 (26%), Positives = 191/505 (37%), Gaps = 146/505 (28%)

Query: 64  RPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNA 123
            PF++   G     TY ++     ++ + L A G +PG RV +     P   EA+    A
Sbjct: 18  APFIETPDGLRY--TYGDLDAASARLANLLVALGVKPGDRVAVQVEKSP---EAL----A 68

Query: 124 LSLICV-------PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM 176
           L L  +       PL        +++ +  AE   + V D      LS     A      
Sbjct: 69  LYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPA-LVVCDPANFAWLSK---IAAAAGAP 124

Query: 177 VCFT-------SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 229
              T       SL                  D+F         E +P    ++  I+YTS
Sbjct: 125 HVETLDADGTGSLLEAAAAAP----------DDF---------ETVPRGADDLAAILYTS 165

Query: 230 GTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 288
           GT+G  KG +L+H  + +  ++ VD +      + T DDV +  LP+ H           
Sbjct: 166 GTTGRSKGAMLSHGNLLSNALTLVDYW------RFTPDDVLIHALPIFHT---------- 209

Query: 289 RRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348
                    HG   A           LLAG   +F          L +  P    +   +
Sbjct: 210 ---------HGLFVAT-------NVALLAGASMIF----------LPKFDP--DAVLALM 241

Query: 349 KLAWMNMG----YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVT 403
             A + MG    Y +    P        +  A     +RL ISG APL  E   EF   T
Sbjct: 242 PRATVMMGVPTFYTRLLQEP-----RLTREAAA---HMRLFISGSAPLLAETHREFQERT 293

Query: 404 CCAFLVQGYGLTETCGPT-----------TVCFPDEMCMVGTAGPVSVYSELRLEEVPEM 452
             A L + YG+TET   T           TV FP    + G          LR+ + PE 
Sbjct: 294 GHAIL-ERYGMTETNMNTSNPYDGERRAGTVGFP----LPGV--------SLRVTD-PET 339

Query: 453 GYSPLDDPPCGEVC---VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 508
           G + L   P GE+    V+G  +F GY++ P+ T E    DG+F TGD+G+I   G V I
Sbjct: 340 G-AEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHI 395

Query: 509 IDRKKNLIKISQGEYVALEYLENVY 533
           + R K+LI IS G Y       NVY
Sbjct: 396 VGRGKDLI-ISGG-Y-------NVY 411

Length = 504

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 89.3 bits (222), Expect = 1e-18
 Identities = 112/496 (22%), Positives = 185/496 (37%), Gaps = 76/496 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ EEV +  +ALR  G E   RV +   + P++  A      +  + VP+   L P
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               + L+ +    + +  +++ E+L P  +    LR ++            A       
Sbjct: 92  DDYRYYLNDSRARVLVI-SEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +      E+E       ++   +Y+SG++G PKGVV  H  +       + +  
Sbjct: 144 ----QLIA-TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTA---EAYAK 195

Query: 258 QFEDKMTVDDVYLSF--LPLAHILDRVIEEYF-FRRGASVGYYHGDLNALR--DDLMELK 312
                +T DDV  S   L  A+ L   +  YF    GA+                +   K
Sbjct: 196 NVL-GITEDDVVFSAAKLFFAYGLGNGL--YFPLSVGATTVLMPERPTPDAVFATIERYK 252

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFR 372
           PT+  GVP ++                                          A +LA  
Sbjct: 253 PTVFFGVPTLY------------------------------------------AAMLAAP 270

Query: 373 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 432
           +   R    LRL +S G  L  E+    +      ++ G G TE         P      
Sbjct: 271 EKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA-VKY 329

Query: 433 GTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 491
           GT+G PV  Y E++L  V E G   + D   GE+ VRG +  +GY+   + TRE+ +  W
Sbjct: 330 GTSGKPVPGY-EVKL--VDEDG-EEVADGEIGELWVRGDSSAAGYWNRREKTRETFVGEW 385

Query: 492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS 551
             TGD      +G      R  +++K+S G +V+   +E+     P + +  V G   + 
Sbjct: 386 TRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAVLEAAVVGAEDED 444

Query: 552 MLV---AVVVPCEEDT 564
            L    A VV  +   
Sbjct: 445 GLTKPKAFVVLKDGYQ 460

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 89.6 bits (222), Expect = 1e-18
 Identities = 95/452 (21%), Positives = 152/452 (33%), Gaps = 92/452 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   L + G  PG  V I      + V A+ A        VPL      
Sbjct: 254 TYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPA 313

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +    +  Q       L  D      L                A+   +  
Sbjct: 314 ERLAYILEDSRPTLLLTQ-----AHLRVDDVGLPGL----------------ALDDALSE 352

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +    + +          +  I+YTSG++G PKGV + H  +A  ++       
Sbjct: 353 IPDTDPIPQALLGD---------ALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG---A 400

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR--GASV----GYYHGDLNALRDDLMEL 311
           +F   +  DD  L+   L+   D  + E F     GA +         D  AL + L   
Sbjct: 401 RFG--LDADDRVLALASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQ 456

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAF 371
             T+L  VP                   L R +  A     +                  
Sbjct: 457 GITVLLLVP------------------LLLRLLLLAALAPDLISPC-------------- 484

Query: 372 RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCFPDEM 429
                    RLR ++SGG  L   + + L         L+  YG TE     T+  P   
Sbjct: 485 --------ERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA----TLDAPSFP 532

Query: 430 CMVGTAGPVSVYSELRLEEVPEM--GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES- 486
                   V +   +   ++  +  G  PL     GE+ + G  L  GY   PDLT E  
Sbjct: 533 ISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERF 592

Query: 487 IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 518
           I    + TGD+ + L +G ++ + RK + +KI
Sbjct: 593 IALRLYRTGDLARPLADGALEYLGRKDSQVKI 624

Length = 642

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 88.1 bits (219), Expect = 3e-18
 Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 17/203 (8%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E Y+   ++ SAL   G   G  V +   N P  +EA         + VPL   L  
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ---RLRVMVCFTSLTAEQKEMAVQTG 194
             + FIL+H+E   +FV D++   L             +   +   S  AE  E      
Sbjct: 91  DDIAFILNHSEAKVLFV-DQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEE----- 144

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                +++ L  G  + + I P   ++  ++ YTSGT+G+PKGVV TH     +++ +  
Sbjct: 145 ---GDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHR--GAYLNALGN 199

Query: 255 FLDQFEDKMTVDDVYLSFLPLAH 277
            +   E  M    VYL  LP+ H
Sbjct: 200 VI---EWGMPDRPVYLWTLPMFH 219

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 88.4 bits (219), Expect = 3e-18
 Identities = 98/367 (26%), Positives = 153/367 (41%), Gaps = 60/367 (16%)

Query: 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED 261
           E L LG+ + M  L  +P +I  + YT GT+G  KG +LTH  +   +     +L     
Sbjct: 190 EALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK 249

Query: 262 KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR 321
                +V ++ LPL HI         F +        G  N L  +            PR
Sbjct: 250 LEEGCEVVITALPLYHIFALTANGLVFMK-------IGGCNHLISN------------PR 290

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 381
                   +   ++EL+  R   F  +     N  +     +P  D + F  +K  LGG 
Sbjct: 291 -------DMPGFVKELKKTRFTAFTGV-----NTLFNGLLNTPGFDQIDFSSLKMTLGG- 337

Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 441
                 G A   +  E + +VT    LV+ YGLTET  P     P  + +    G + + 
Sbjct: 338 ------GMAVQRSVAERWKQVTGLT-LVEAYGLTET-SPAACINP--LTLKEYNGSIGL- 386

Query: 442 SELRLEEVPEMGYSPLDDP-------PCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 493
                  +P       DD          GE+C++G  +  GY+K P+ T + +  DGW H
Sbjct: 387 ------PIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLH 440

Query: 494 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKS 551
           TGDI ++   G V I+DRKK++I +S G  V    +E+V  + P + ++   G  D    
Sbjct: 441 TGDIARMDEQGFVYIVDRKKDMILVS-GFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSG 499

Query: 552 MLVAVVV 558
            +V VV+
Sbjct: 500 EIVKVVI 506

Length = 560

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 87.4 bits (217), Expect = 3e-18
 Identities = 91/354 (25%), Positives = 129/354 (36%), Gaps = 77/354 (21%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLS----FL- 273
           I   +YTSGT+G PKGV+  H    TF        + F  +   +   D   S    F  
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFA-------EAFARELLGLQPGDRIFSSSKLFFA 145

Query: 274 -PLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             L + L       F    GAS     G     A+ D L   +PT+L GVP ++      
Sbjct: 146 YGLGNSL------LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY------ 193

Query: 330 IKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 389
                                                 LL      A L   +RL +S G
Sbjct: 194 ------------------------------------RALLESGAGSAPLFRSVRLCVSAG 217

Query: 390 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEE 448
             L   + E         ++ G G TE         P      GT G PV  Y E RL  
Sbjct: 218 EALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAA-RPGTTGRPVPGY-EARL-- 273

Query: 449 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI 508
           V E G         G++ VRG +L  GY+  P+ T+ ++ DGW  TGD      +G  + 
Sbjct: 274 VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDADGWYRY 332

Query: 509 IDRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVP 559
             R  ++IK+S G++V+   +E      P + +   + V  +     L A VVP
Sbjct: 333 QGRADDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVP 385

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 86.9 bits (216), Expect = 6e-18
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 408 LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---- 462
           + Q YG+TET     T+   D +  +G+AG      EL++E+         D        
Sbjct: 281 VYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK---------DGVVVPPFE 331

Query: 463 -GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 521
            GE+ V+G  +  GY    D TRE+  DGWF TGDIG +   G + ++DR+ +LI IS G
Sbjct: 332 EGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLI-ISGG 390

Query: 522 EYVALEYLENVYCVAPIIEDIWVYG 546
           E +    +E V    P + +  V G
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEAGVVG 415

Length = 483

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 87.1 bits (216), Expect = 6e-18
 Identities = 127/510 (24%), Positives = 193/510 (37%), Gaps = 97/510 (19%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY  + E VL + S LR  G   G RV IY     + V AM        + VP+   L  
Sbjct: 27  TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V  IL    +  + V   +  +LL P       LR ++         +      G +P
Sbjct: 87  EQVAHILADCNVR-LLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142

Query: 198 YSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            SW + L LG        PP P    ++  I+YTSG++G PKGVVL+H  +      V  
Sbjct: 143 ASWPKLLALGDA-----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVAT 197

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
           +L+        DD  L+ LPL+        +Y F +  +  +Y G    L D L+     
Sbjct: 198 YLE-----NRPDDRLLAVLPLSF-------DYGFNQ-LTTAFYVGATVVLHDYLL----- 239

Query: 315 LLAGVPR-VFEKI-HEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFR 372
                PR V + +   GI   L  + PL  ++    +L W           P +   + R
Sbjct: 240 -----PRDVLKALEKHGI-TGLAAVPPLWAQLA---QLDW-----------PESAAPSLR 279

Query: 373 KVKARLGGRL-RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-- 429
            +    GG + R  +S           FL           YGLTE    T +  P+E+  
Sbjct: 280 YL-TNSGGAMPRATLSRLRSFLPNARLFLM----------YGLTEAFRSTYLP-PEEVDR 327

Query: 430 --CMVGTAGP---VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 484
               +G A P   V V  E   E  P            GE+  RG  +  GY+ +P+ T 
Sbjct: 328 RPDSIGKAIPNAEVLVLREDGSECAPG---------EEGELVHRGALVAMGYWNDPEKTA 378

Query: 485 E------------SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 532
           E             + +    +GD  +    G +  + R+  +IK S G  V+   +E V
Sbjct: 379 ERFRPLPPFPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPTEVEEV 437

Query: 533 YCVAPIIEDIWVYG---DSLKSMLVAVVVP 559
                ++ +   +G    +L   +V VV P
Sbjct: 438 AYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 84.6 bits (210), Expect = 1e-17
 Identities = 89/376 (23%), Positives = 149/376 (39%), Gaps = 103/376 (27%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  I+YTSG++G+PKGV+L+H  +      +  +L+     +T DD  L+ LP +    
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFSF--- 54

Query: 281 RVIEEY-------FFRRGASV------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
               +Y        FR G ++       +    L  L  +    + T  AGVP  + +  
Sbjct: 55  ----DYGLSQLLTAFRVGGTLVLESRFAFPRDVLKHLAKE----RITGFAGVPTTWAQ-- 104

Query: 328 EGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVIS 387
                 L  L PL R  F +L                                  R + +
Sbjct: 105 ------LLRLDPLAREDFPSL----------------------------------RYLTN 124

Query: 388 GGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGPVSVYS 442
            G  L  + + +  R    A L   YGLTE    +T   P+E       +G A P     
Sbjct: 125 AGGALPAKTILQLRRAFPDAKLFSMYGLTE-AFRSTYLPPEELDRRPDSIGKAIP---NV 180

Query: 443 ELRLEEVPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------DGW 491
           EL + +         D   C     GE+  RG  +  GY+ +P+ T E +       +  
Sbjct: 181 ELWVVDE--------DGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIV 232

Query: 492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DS 548
            +TGD+ ++   G +  + RK ++IK ++G  V+   +E V C  P++ +  V G     
Sbjct: 233 LYTGDLVRMDEEGYLYFVGRKDDMIK-TRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPL 291

Query: 549 LKSMLVAVVVPCEEDT 564
           L   +VAVVV  + ++
Sbjct: 292 LGQAIVAVVVSADGES 307

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 85.7 bits (213), Expect = 1e-17
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 26/164 (15%)

Query: 381 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTA 435
            LR++  GGAPLS E+   +       L Q +G+ E  G   V +     P ++ M  T 
Sbjct: 256 SLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--G--LVNYTRLDDPPDVIM-RTQ 310

Query: 436 G-PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 488
           G P+S   E+R+     E VP            GE+  RG     GYY+ P+    +   
Sbjct: 311 GRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHNARAFTD 362

Query: 489 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 532
           DG++ TGD+ +I  +G  +++ R K+ I    GE ++ E +EN+
Sbjct: 363 DGFYRTGDLVRIDADGYYRVVGRIKDQI-NRGGEKISPEEIENL 405

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 387 SGGAP----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---------PDEMCMVG 433
           +G AP    L    E+  RVT        YGL+ET GP+TVC          P+E   + 
Sbjct: 318 AGAAPPPSVLFAMSEKGFRVT------HTYGLSETYGPSTVCAWKPEWDSLPPEEQARLN 371

Query: 434 TAGPVSVYSELRLEEV--PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 491
               V       L+ V    M   P D    GE+ +RG  +  GY KNP    E+  +GW
Sbjct: 372 ARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGW 431

Query: 492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 539
           FH+GD+G   P+G ++I DR K++I IS GE ++   +ENV    P +
Sbjct: 432 FHSGDLGVKHPDGYIEIKDRSKDII-ISGGENISSLEVENVVYTHPAV 478

Length = 567

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 11/143 (7%)

Query: 381 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-P 437
            L+L + GG  +   V E ++++T   +L++GYGLTE C P     P D     G+ G P
Sbjct: 326 SLKLSVGGGMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLP 383

Query: 438 V-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGD 496
           V S   +L  ++  E+   P  +P  GE+ V+G  +  GY++ P+ T E I DGW  TGD
Sbjct: 384 VPSTEIKLVDDDGNEV---PPGEP--GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGD 438

Query: 497 IGQILPNGVVKIIDRKKNLIKIS 519
           I  +   G ++I+DRKK++I +S
Sbjct: 439 IAVMDEEGFLRIVDRKKDMILVS 461

Length = 560

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 84.5 bits (210), Expect = 3e-17
 Identities = 103/529 (19%), Positives = 167/529 (31%), Gaps = 150/529 (28%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   LRA G  PG  V +     P+ V A+ A        VPL      
Sbjct: 14  TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F+L+ +    +   +                   +V        +           
Sbjct: 74  ERLAFMLEDSGARVLLTDESLAPLA-------RADQLPLVILEEELDAEDAGPPA----- 121

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                  ++  +MYTSG++G PKGV + H  +   V   + ++ 
Sbjct: 122 -----------------PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTN-YIA 163

Query: 258 QFEDKMTVDDVYLSFLPLAHILD----------------RVIEEYFFRRGASVGYYHGDL 301
                   DD +L   PL+   D                 +I++              D 
Sbjct: 164 LDP-----DDRFLQLSPLS--FDASTFEIWGALLNGGRLVLIDKETLL----------DP 206

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF--DALKLAWMNMGYKQ 359
           + L   + E   T+L     +F   ++ + +  E L  LR+ +   D L  A +      
Sbjct: 207 DRLARLIAEQGVTVLWLTAALF---NQLVDEDPEALAGLRQLLVGGDVLSPAHV------ 257

Query: 360 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 419
                       R+V A   G LRL+                         GYG TE   
Sbjct: 258 ------------RRVLAACPG-LRLIN------------------------GYGPTEN-- 278

Query: 420 PTT--VCFP-DEMCMVGTAGPV-------SVY---SELRLEEVPEMGYSPLDDPPCGEVC 466
            TT   C     +     + P+       +VY    E +   +             GE+ 
Sbjct: 279 -TTFSTCHVITRLDEAADSIPIGRPIPNTTVYILDEEGQPVPIGVP----------GELY 327

Query: 467 VRGKTLFSGYYKNPDLTRESIID-----G--WFHTGDIGQILPNGVVKIIDRKKNLIKIS 519
           V G  L  GY   P+LT E  +      G   + TGD+ +  P+G ++ + R    +KI 
Sbjct: 328 VGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKI- 386

Query: 520 QGEYVALEYLENVYCVAPIIEDIWV----YGDSLKSMLVAVVVPCEEDT 564
           +G  + L  +E      P + +  V         K  LVA VV      
Sbjct: 387 RGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKR-LVAYVVARGALD 434

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 83.3 bits (206), Expect = 1e-16
 Identities = 125/520 (24%), Positives = 194/520 (37%), Gaps = 162/520 (31%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GP V  TY ++++  L++  AL   G + G RV     N  + +EA      +  IC  +
Sbjct: 35  GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTV 94

Query: 132 YDTLGPGAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVM---------- 176
              L P  + +I++HAE      D  FV    + E ++    S +R  V+          
Sbjct: 95  NPRLFPEQIAWIINHAEDRVVITDLTFV---PILEKIADKLPSVERYVVLTDAAHMPQTT 151

Query: 177 ----VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTS 232
               V +    AE            ++W  F                     + YTSGT+
Sbjct: 152 LKNAVAYEEWIAEAD--------GDFAWKTF--------------DENTAAGMCYTSGTT 189

Query: 233 GDPKGVVLTHET---IATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------- 278
           GDPKGV+ +H +    A   +  D          +  D  L  +PL H            
Sbjct: 190 GDPKGVLYSHRSNVLHALMANNGDAL------GTSAADTMLPVVPLFHANSWGIAFSAPS 243

Query: 279 -----------LDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL-KPTLLAGVPRVFEKI 326
                      LD          GASV  Y         +L++  K T  AGVP V+  +
Sbjct: 244 MGTKLVMPGAKLD----------GASV--Y---------ELLDTEKVTFTAGVPTVWLML 282

Query: 327 HEGIKKALEELRPLRRRIF------DALKLAWMNMGYKQR------EASPLADLLAFRKV 374
            + ++K   +L  L+  +        ++  A+ +MG + R      E SPL  L A +  
Sbjct: 283 LQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPP 342

Query: 375 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 434
            ++L G  RL +                       QGY       P  V    EM +   
Sbjct: 343 FSKLPGDARLDV--------------------LQKQGYP------PFGV----EMKITDD 372

Query: 435 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--GWF 492
           AG          +E+P       D    G + VRG  + + YY+        I+D  G+F
Sbjct: 373 AG----------KELPW------DGKTFGRLKVRGPAVAAAYYRVDG----EILDDDGFF 412

Query: 493 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 532
            TGD+  I   G ++I DR K++IK S GE+++   LEN+
Sbjct: 413 DTGDVATIDAYGYMRITDRSKDVIK-SGGEWISSIDLENL 451

Length = 542

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 83.1 bits (206), Expect = 1e-16
 Identities = 83/309 (26%), Positives = 114/309 (36%), Gaps = 78/309 (25%)

Query: 228 TSGTSGDPKGVVLTH--ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-VIE 284
           T GT+G PK    TH  E    ++  + L L          D     LPL H+    V  
Sbjct: 221 TGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-------GDTVFCGLPLFHVNALLVTG 273

Query: 285 EYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKAL 334
                RGA V      GY       +  +  ++    +   L+GVP V            
Sbjct: 274 LAPLARGAHVVLATPQGYRG---PGVIANFWKIVERYRINFLSGVPTV------------ 318

Query: 335 EELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 394
                                          A LL    V       LR  + G APL  
Sbjct: 319 ------------------------------YAALLQ-VPVDGHDISSLRYALCGAAPLPV 347

Query: 395 EV-EEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEM 452
           EV   F   T    +V+GYGLTE TC  ++V  PD    +G+ G    Y  +R+  + + 
Sbjct: 348 EVFRRFEAATGVR-IVEGYGLTEATCV-SSVNPPDGERRIGSVGLRLPYQRVRVVILDDA 405

Query: 453 GYSPLDDPP--CGEVCVRGKTLFSGYY---KNPDLTRESIIDGWFHTGDIGQILPNGVVK 507
           G    D      G +C+ G  +FSGY     N  L  E   DGW +TGD+G+I  +G   
Sbjct: 406 GRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE---DGWLNTGDLGRIDADGYFW 462

Query: 508 IIDRKKNLI 516
           +  R K+LI
Sbjct: 463 LTGRAKDLI 471

Length = 632

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 82.3 bits (204), Expect = 2e-16
 Identities = 76/322 (23%), Positives = 113/322 (35%), Gaps = 88/322 (27%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P +   ++YTSG++G PKGVV+TH  I  F+                 D  L F  +A 
Sbjct: 97  SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL---RAEGAILGI--RPGDRVLQFASIA- 150

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG---VPRVFEKIHEGIKKAL 334
             D  I E F                          TLLAG   V    E   E + + L
Sbjct: 151 -FDVSILEIFT-------------------------TLLAGGTLVIPPEELRLEDLAEFL 184

Query: 335 EELRPLRRRIFDALKLAWMNMGYKQREASP-LADLLAFRKVKARLGGRLRLVISGGAPLS 393
             LR               ++       +P L  LL    V       LR +I GG    
Sbjct: 185 NRLRV-----------TVAHL-------TPSLLALLDPEDVP-----SLRTLILGGEACP 221

Query: 394 TEVEEFLRVTCCAFLVQGYGLTETC--GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 451
             + +         L+  YG TE       +   P +   +G   P+  Y+   L     
Sbjct: 222 QALVDRWSKPRR--LLNTYGPTEATVTATASRLTPGKPVNIG--RPLPNYTCWVL----- 272

Query: 452 MGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------DGW----FHTGD 496
               P  +P       GE+C+ G  +  GY   P+LT E  I      +      + TGD
Sbjct: 273 ---DPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGD 329

Query: 497 IGQILPNGVVKIIDRKKNLIKI 518
           + + L +G ++ + RK + +KI
Sbjct: 330 LVRYLEDGSLEFLGRKDDQVKI 351

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 82.7 bits (204), Expect = 2e-16
 Identities = 102/361 (28%), Positives = 151/361 (41%), Gaps = 66/361 (18%)

Query: 199 SWDEFLHLG-----KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGV 252
           +W E L          +  EIL     ++C + ++SGT+G  KGV+LTH   +A   S  
Sbjct: 161 NWKELLEAADRAGDTSDNEEILQT---DLCALPFSSGTTGISKGVMLTHRNLVANLCS-- 215

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
            LF      +M    V L  +P  HI  +  +       +G  V     +L    + L+ 
Sbjct: 216 SLF--SVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALIT 273

Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLA 370
            + +    VP +                     I + +K             +P+ +   
Sbjct: 274 QEVSFAPIVPPI---------------------ILNLVK-------------NPIVEEFD 299

Query: 371 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTE-TCGPTTVCFPDE 428
             K+K      L+ +++  APL+ E+            VQ  YGLTE +C   T   P++
Sbjct: 300 LSKLK------LQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEK 353

Query: 429 MCMVGTAGPVSVYSELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 484
               G A   SV   L   EV    P+ G S   + P GE+CVR + +  GYY N + T 
Sbjct: 354 G--HGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETD 410

Query: 485 ESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 543
            +I  DGW HTGDIG I  +G + I+DR K LIK  +G  VA   LE +    P +ED  
Sbjct: 411 RTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAA 469

Query: 544 V 544
           V
Sbjct: 470 V 470

Length = 546

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 81.7 bits (203), Expect = 2e-16
 Identities = 80/325 (24%), Positives = 118/325 (36%), Gaps = 84/325 (25%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P ++  ++YTSG++G PKGV++ H  +   ++      +++   +T  D  L F   + 
Sbjct: 91  DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAW---LQERYG--LTAGDRVLQFASFSF 145

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG----VPRVFEKIHEGIKKA 333
             D           ASV               E+ P LL+G    +          + + 
Sbjct: 146 --D-----------ASV--------------WEIFPPLLSGATLVLAP------PEVLRD 172

Query: 334 LEELRPL--RRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 391
            E L  L    RI   L L            S L  LL   +        LRLVI GG  
Sbjct: 173 PEALAELLREHRI-TVLHLV----------PSLLRALLDALE--PAALPSLRLVIVGGEA 219

Query: 392 LSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVC------FPDEMCMVGTAGP-VSVY-- 441
           L  E V  +  +   A LV  YG TET    T               +G       VY  
Sbjct: 220 LPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVL 279

Query: 442 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-------- 493
            E  L  VP            GE+ + G  +  GY   P+LT E  +   F         
Sbjct: 280 DE-DLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYR 330

Query: 494 TGDIGQILPNGVVKIIDRKKNLIKI 518
           TGD+ + LP+G ++ + R  + +KI
Sbjct: 331 TGDLARWLPDGNLEFLGRADDQVKI 355

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 79/316 (25%), Positives = 116/316 (36%), Gaps = 80/316 (25%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDD------VYLSFL 273
              + +TSGT+G PK V+ TH      +     +LD   D +  T+ D       + S  
Sbjct: 83  PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142

Query: 274 -PLAHILDRVIEEYFFRRGASVGYYHGD-LNALR--DDLMELKPTLLAGVPRVFEKIHEG 329
            P                GA+V  YHG   +A R  + L     T     P  +      
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY------ 183

Query: 330 IKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 389
                   R L ++                       DL ++          LR V+S G
Sbjct: 184 --------RMLLQQ-----------------------DLSSYDF------SHLRHVVSAG 206

Query: 390 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEE 448
            PL+ EV ++ R      +  GYG TET G     FP      G+ G P   Y   R+  
Sbjct: 207 EPLNPEVIDWWRAATGLPIRDGYGQTET-GLLVANFPGMEVKPGSMGRPAPGY---RVAI 262

Query: 449 VPEMG-YSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGDIGQILPN 503
           + + G   P  +   G++ VR K     LF GY K+P+ T  +I   W+ TGD      +
Sbjct: 263 IDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIKDED 320

Query: 504 GVVKIIDRKKNLIKIS 519
           G    + R  ++IK S
Sbjct: 321 GYFWFVGRADDVIKSS 336

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 80.1 bits (198), Expect = 9e-16
 Identities = 54/166 (32%), Positives = 70/166 (42%), Gaps = 33/166 (19%)

Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-------DEMCMVGT 434
           LR VI  GAP+    ++         LVQ +GL E  G  TV  P            +GT
Sbjct: 282 LRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGT 341

Query: 435 AGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESI 487
            G           E   M     DD     PP   GE+CV G  +F+GYY NP+   ++ 
Sbjct: 342 CG----------FERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF 391

Query: 488 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 533
            DGWF TGD+G +   G + I  R  ++  IS G         NVY
Sbjct: 392 RDGWFRTGDLGHLDARGFLYITGRASDMY-ISGG--------SNVY 428

Length = 528

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 79.5 bits (196), Expect = 3e-15
 Identities = 129/638 (20%), Positives = 235/638 (36%), Gaps = 83/638 (13%)

Query: 42   NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
             +  +++  SV ++   R LG       + G   W TY  V     ++ S L A G  PG
Sbjct: 427  RSLGEMWERSVTRHSTFRCLG----QTSESGESEWLTYGTVDARARELGSGLLALGVRPG 482

Query: 102  CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG-AVNFILDHAEIDFVFVQDKKVK 160
              +G+        V    AC       +PL   +G G  +  ++D  +I  VF     V 
Sbjct: 483  DVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVVFADRNSVA 539

Query: 161  ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ-TGIKPYSWDEFLHLGKVNEMEILPPQP 219
             +L+  CRS ++L  +V   S   E      +   I    ++     G+   +  +P + 
Sbjct: 540  AILT--CRS-RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR---LCPVPLKE 593

Query: 220  FNICTIMYT-------SGTSGDPKGVVLTHETIATFVS---GVDLFLDQFEDKMTVDDVY 269
                  ++T       S +      V +TH  +   +S      +    F+  + V    
Sbjct: 594  HVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMV---- 649

Query: 270  LSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
              F P A + +RV     F  G++V     D   L+   ++ +PT+L   P +F      
Sbjct: 650  -HFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQ 706

Query: 330  IKKALEELRPLRRRIFD---ALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 386
            + +A E    +   +F+    L+   +N+    R  S L   + FR  +  LGG +  ++
Sbjct: 707  LSRANERYSAVYSWLFERAFQLRSRLINI---HRRDSSLLRFIFFRATQELLGGCVEKIV 763

Query: 387  --SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 444
                    S  + E + V C    ++      + G   V      C+ GT  P S+  +L
Sbjct: 764  LCVSEESTSFSLLEHISV-CYVPCLREVFFLPSEG---VF-----CVDGTPAP-SLQVDL 813

Query: 445  RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 504
                       P D+P  G     G+ + +   K        I   W    D        
Sbjct: 814  E----------PFDEPSDGAGI--GQLVLA--KKGEPRRTLPIAAQW--KRD-------R 850

Query: 505  VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDT 564
             ++++     ++     EYV    LE ++  +  + DI++Y D  +  ++A+V P   DT
Sbjct: 851  TLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIVSP-NRDT 908

Query: 565  K--KW--AYSNGHAGSFLELCSLVQLQNY----ILSELKNAAERNKLRGFEHIKGVILDP 616
               +W  ++  G  G         +L  Y    + ++    A+ N L      + V L P
Sbjct: 909  VEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHP 968

Query: 617  RPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP 654
              F      +T   K +R+ +  Y+   I++ Y  +  
Sbjct: 969  HAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSDVET 1006

Length = 1452

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 78.3 bits (193), Expect = 4e-15
 Identities = 99/351 (28%), Positives = 138/351 (39%), Gaps = 81/351 (23%)

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           P+ W   +    V++ +     P ++  I++TSGT   PKGV LTH   A  ++     L
Sbjct: 167 PFEW--LMRWFGVSDKD-----PEDVAVILFTSGTEKLPKGVPLTH---ANLLANQRACL 216

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
             F  K   DDV +SFLP  H        Y F                      L P LL
Sbjct: 217 KFFSPKE--DDVMMSFLPPFH-------AYGFNSCT------------------LFP-LL 248

Query: 317 AGVPRVF-------EKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLL 369
           +GVP VF       +KI E I +A           FD +    +    KQ    P     
Sbjct: 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI----LKTAKKQESCLP----- 299

Query: 370 AFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGP----TTVC 424
                       LR V+ GG      + +E L+      L QGYG TE C P     TV 
Sbjct: 300 -----------SLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE-CSPVITINTVN 347

Query: 425 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 484
            P     VG   P+     + +  V E    P+     G V  RG +LFSGY    D  +
Sbjct: 348 SPKHESCVGM--PIR---GMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE-DFGQ 401

Query: 485 ESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 532
             +    + W+ TGD+G +  +G + +  R    +KI   E V+LE LE++
Sbjct: 402 GFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIG-AEMVSLEALESI 451

Length = 539

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 78.2 bits (193), Expect = 4e-15
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)

Query: 463 GEVCVRG---KTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKI 518
           GE+C++G   KT+F  YY +P  T + +  DGW HTGD G +   G    +DR+ N+IK 
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKR 426

Query: 519 SQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AVVVPCE 561
             GE V+   LEN+    P I+DI V G  DS++   + A VV  E
Sbjct: 427 G-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE 471

Length = 517

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 78.0 bits (192), Expect = 5e-15
 Identities = 116/496 (23%), Positives = 186/496 (37%), Gaps = 76/496 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+   V +I   L   G   G  V     N  ++     AC  +  +  PL      
Sbjct: 55  SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114

Query: 138 GAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEM 189
             ++F+L+HA+   VFV     +          L         LR +V       +  + 
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSK---LPALRQVVVIDGDGDDSFDR 170

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            + T  +  + D    L          P P ++  ++YTSGT+G+PKGV+ T  T+    
Sbjct: 171 VLMTPERDDTPDAAAILAGPR------PSPDDVTQLIYTSGTTGEPKGVMHTANTL---F 221

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLM 309
           S +  + ++ E  +   DV L   P+AH                 G+ +G        LM
Sbjct: 222 SNIHPYAERLE--LGGGDVILMASPMAHQ---------------TGFMYG--------LM 256

Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLL 369
              P +L     V + I    + A E +R                + +       L DL 
Sbjct: 257 --MPLIL-NATAVLQDIWNPAR-AAELIRETG-------------VTFTMASTPFLTDLC 299

Query: 370 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-- 427
              K        L   +  GAP+   + E       A +V  +G+TE  G  TV  PD  
Sbjct: 300 RAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEPDDA 358

Query: 428 -EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 486
            E        P+    E+++ +      S  +    G + VRG + F GY K P L    
Sbjct: 359 LEKASTTDGRPLPGV-EVKVIDANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLNSTD 414

Query: 487 IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
             +GWF TGD+      G ++I  R K++I I  GE + +  +EN+    P +  + +  
Sbjct: 415 A-EGWFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVAIVA 472

Query: 547 ---DSLKSMLVAVVVP 559
              + L     AVVVP
Sbjct: 473 YPDERLGERACAVVVP 488

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 76.9 bits (190), Expect = 1e-14
 Identities = 72/298 (24%), Positives = 115/298 (38%), Gaps = 91/298 (30%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +    + +        ++     V + +LP  H       
Sbjct: 169 YLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEE---PPVLVDWLPWNHTFGGNHN 225

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + V+      +   G  V G +   L  LR    E+ PT+   VP+ FE + +    AL
Sbjct: 226 FNMVLYNGGTLYIDDGKPVPGLFEETLRNLR----EVSPTVYFNVPKGFEMLVD----AL 277

Query: 335 EELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 394
           E    LRRR F                                   RLRL+   GA L  
Sbjct: 278 ERDAALRRRFF----------------------------------KRLRLLFYAGAALPQ 303

Query: 395 EVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGPVSVYS- 442
           +V + L          R+   +    G G TET    T   +P +      +G + + + 
Sbjct: 304 DVWDRLQALAVRTTGERIPMTS----GLGATETAPTATFVHWPTDR-----SGVIGLPAP 354

Query: 443 --ELRLEEVPEMG-YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGD 496
             EL+L  VP  G           EV V+G  +  GY+++P+LT E+   +G++  GD
Sbjct: 355 GTELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEMCMVGTAGP 437
           LR + S  APL+ E  + L+    A +V  +G+TE     T             V + G 
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL 356

Query: 438 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 497
           V   +  ++  V   G  PL     GEV +RG T+  GY  +P +T  +  DGW  TGD+
Sbjct: 357 VGRSTGAQIRIVGSDG-LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDL 415

Query: 498 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV- 554
           G +   G + I  R K LI    GE ++ E +E V    P + +  V+G  D L    V 
Sbjct: 416 GSLSAAGDLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVA 474

Query: 555 AVVVPCE 561
           AV+VP E
Sbjct: 475 AVIVPRE 481

Length = 534

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 75.3 bits (186), Expect = 3e-14
 Identities = 41/206 (19%), Positives = 80/206 (38%), Gaps = 20/206 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ ++ L++   LR  G + G  V +   N  ++      C A   I      +  P
Sbjct: 12  TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +   L  ++   +F  D    + +    +    +  ++   S        A    ++ 
Sbjct: 72  DELAHQLKISKPKLIFC-DPDELDKVKEAAKELGPVVRIIVLDS--------APDGVLRI 122

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
               E        E E  P    +       ++Y+SGT+G PKGV+L+H+ I   ++ + 
Sbjct: 123 EDLLEPRLGA---EDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNI---IANLS 176

Query: 254 LFLDQF-EDKMTVDDVYLSFLPLAHI 278
              D    +  + +DV L+FLP  H 
Sbjct: 177 QVQDTLKGNPDSSNDVVLTFLPFYHA 202

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 75.7 bits (186), Expect = 3e-14
 Identities = 122/500 (24%), Positives = 186/500 (37%), Gaps = 90/500 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 30  TYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAV---------P 80

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +N  L  AEI  +  + +    +++ D +    +        + A      V  G  P
Sbjct: 81  ALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDL--VGLGE-P 137

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL- 256
            S    +        E  P +P     + YTSGT+G PKG V+      + V    LF+ 
Sbjct: 138 ESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV----LFMS 185

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
            Q   +    +V L  +PL H+               +G++   + AL  D         
Sbjct: 186 TQAGLRHGRHNVVLGLMPLYHV---------------IGFFAVLVAALALD--------- 221

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQRE------ASP--LADL 368
                       G    +EE  P      DALKL        ++E      A+P  L  L
Sbjct: 222 ------------GTYVVVEEFDPA-----DALKLI-------EQERVTSLFATPTHLDAL 257

Query: 369 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 428
            A  +        L  V   GA +   V E +        V  YG TE      +  P  
Sbjct: 258 AAAAEGAPLKLDSLEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPRT 317

Query: 429 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV-RGKTLFSGYYKNPDLTRESI 487
               GT      +SE+R+  +       L +   GE+ V      F+GY   P  T E +
Sbjct: 318 ----GTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKL 373

Query: 488 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG- 546
            DGW+ T D+  + P+G V+I+ R  ++I IS GE +    +E V   AP + ++ V G 
Sbjct: 374 QDGWYRTSDVAVVDPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPGVTEVVVIGL 432

Query: 547 --DSLKSMLVAVVVPCEEDT 564
             +     + A VVP E +T
Sbjct: 433 PDERWGQSVTACVVPREGET 452

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 75.1 bits (185), Expect = 3e-14
 Identities = 92/352 (26%), Positives = 132/352 (37%), Gaps = 68/352 (19%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG +  H  +   + GV+L+ +         DV+ +    A I      
Sbjct: 93  LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELA---PRPGDVFWTPADWAWI------ 143

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                              L D L+   P L  GVP V                  R + 
Sbjct: 144 -----------------GGLLDVLL---PALYFGVPVV----------------AYRMQR 167

Query: 345 FDA-LKLAWMNMGYKQREA--SPLADLLAFRKV---KARLGGRLRLVISGGAPLSTEVEE 398
           FD     A M   Y    A   P A L   R+V   +AR   RLR V SGG  L  E+ E
Sbjct: 168 FDPERAFALMRR-YGVTNAFLPPTA-LKMMRRVGSERARYDLRLRAVASGGESLGEELLE 225

Query: 399 FLRVTCCAFLVQGYGLTETCGPTTVC---FPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 455
           + R      + + YG TE       C    P     +G   P        +  V + G  
Sbjct: 226 WARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGH-----EVAVVDDAG-R 279

Query: 456 PLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 513
           P+     GE+ V+     +F GY+ NP+ T       W  TGD+G+   +G +    R  
Sbjct: 280 PVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDADGYLWFKGRAD 339

Query: 514 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AVVVPCEE 562
           ++IK S G  +    +E      P + +  V G  D  +  +V A VV  E 
Sbjct: 340 DVIK-SSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEG 390

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 75.8 bits (187), Expect = 3e-14
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 463 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 519
           GE+ VR  +L  GY+  P+ T E++ DGW HTGDIG+I   G +  + R+K ++K++
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVN 471

Length = 567

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 75.0 bits (185), Expect = 4e-14
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 21/123 (17%)

Query: 412 YGLTETCGPT-TVCFPDE-MCMVGTAGPVSVYSELRL-----EEVP--EMGYSPLDDPPC 462
           YG TE   P  TV  P+E +   G+AG   +  E R+      +V   E+G         
Sbjct: 319 YGQTEI-APLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVG--------- 368

Query: 463 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 522
            E+  R   L  GY+ +P+ T E+   GWFH+GD+G +   G + ++DRKK++IK + GE
Sbjct: 369 -EIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIK-TGGE 426

Query: 523 YVA 525
            VA
Sbjct: 427 NVA 429

Length = 523

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 74.5 bits (183), Expect = 7e-14
 Identities = 60/181 (33%), Positives = 85/181 (46%), Gaps = 28/181 (15%)

Query: 380 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-- 436
             L+ V  G APLS + +++F++       +QGYG+TE+              VGT G  
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA------------VGTRGFN 366

Query: 437 --PVSVYSELRLEEVPEMGYSPLD------DPP--CGEVCVRGKTLFSGYYKNPDLTRES 486
              +S YS + L   P M    +D       PP  CGE+ ++G  +  GY  NP  T+ +
Sbjct: 367 TEKLSKYSSVGLL-APNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQST 425

Query: 487 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 545
           I  DGW  TGDI     +G + I+DR K +IK  +G  +A   LE V    P I D  V 
Sbjct: 426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVT 484

Query: 546 G 546
            
Sbjct: 485 A 485

Length = 560

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.2 bits (183), Expect = 8e-14
 Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 36/223 (16%)

Query: 78  TYKEVYEEVLQIVSAL-RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +Y+E+ EE  ++   L +  G   G RV +Y  N PQ+V A  A    + + VP+     
Sbjct: 37  SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96

Query: 137 PGAVNFILDHAEIDFVFV-QD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
              +   +  +      V  +   KV   +        RLR ++           +  + 
Sbjct: 97  EEELAHYVTDSGARVAIVGSELAPKVAPAVG-----NLRLRHVIV----AQYSDYLPAEP 147

Query: 194 GIKPYSW-------DEFLHLGKVNEMEIL-----PP----QPFNICTIMYTSGTSGDPKG 237
            I   +W             G V   E L     PP     P ++  + YTSGT+G PKG
Sbjct: 148 EIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKG 207

Query: 238 VVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            + TH T+ A  V  V           T + V L+ LPL H+ 
Sbjct: 208 CMHTHRTVMANAVGSVLWS------NSTPESVVLAVLPLFHVT 244

Length = 546

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 73.4 bits (181), Expect = 9e-14
 Identities = 80/373 (21%), Positives = 126/373 (33%), Gaps = 111/373 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS------------- 271
           ++YTSG++G PKGV ++H  +  F+  +          +   D  L+             
Sbjct: 98  VIYTSGSTGKPKGVEVSHRALVNFLLSM-----ARRPGLGASDRLLAVTTISFDISVLEL 152

Query: 272 FLPLAHILDRVIEEYFFRRGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
            LPL               GA+V         D   L   + + + T++   P  +    
Sbjct: 153 LLPLL-------------SGATVVIASAETVRDPERLARLIADERITIMQATPATW---- 195

Query: 328 EGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVIS 387
                         R +  A        G++ RE                    L   + 
Sbjct: 196 --------------RMLLAA--------GWRGRE-------------------SLT-ALC 213

Query: 388 GGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV---SVY-- 441
           GG  L  ++ E L  T    L   YG TET   +T           T G P+    VY  
Sbjct: 214 GGEALPRDLAERLLSTGAE-LWNMYGPTETTIWSTCARVTAADGPVTIGRPIANTQVYVL 272

Query: 442 -SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--------WF 492
             +L+   VP  G         GE+ + G  +  GY   P+LT E  +           +
Sbjct: 273 DEDLQP--VPP-GV-------PGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLY 322

Query: 493 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY---GDSL 549
            TGD+ +  P+G ++ + R  + +KI +G  + L  +E      P + D  V        
Sbjct: 323 RTGDLVRWRPDGRLEYLGRADDQVKI-RGFRIELGEIEAALRAHPGVADAVVVVREEGPG 381

Query: 550 KSMLVAVVVPCEE 562
              LVA VVP   
Sbjct: 382 DQRLVAYVVPKAG 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 35/202 (17%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E++E V+ +   L A G + G RV +   N  + +  + A   L  + V L   L 
Sbjct: 28  VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + + LD AE+  +   D    + L P           V F  L    KE       +
Sbjct: 88  REELLWQLDDAEVKCLITDDDFEAK-LIPGIS--------VKFAELMNGPKE--EAEIQE 136

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
            +  DE                   + TIMYTSGT+G PKGV+ T+     + S V   L
Sbjct: 137 EFDLDE-------------------VATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175

Query: 257 DQFEDKMTVDDVYLSFLPLAHI 278
           +     +T DD +L+ +P+ HI
Sbjct: 176 NL---GLTEDDCWLAAVPIFHI 194

Length = 483

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 71.5 bits (176), Expect = 5e-13
 Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 51/165 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+  EV ++ S L A G   G RVGIY    P+ V A+ A   +  I VP++   GP
Sbjct: 9   TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            AV   L  AE   +   D                                         
Sbjct: 69  DAVATRLQDAEAKVLITADG---------------------------------------- 88

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                FL  GK  +++  P        I+YTSGT+G PKG V TH
Sbjct: 89  -----FLRRGKRVDLKDDP------AMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.2 bits (170), Expect = 3e-12
 Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 29/168 (17%)

Query: 367 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 426
           D LA   +  R    LR +  GGA +   V E L+       V+GYGLTET   T    P
Sbjct: 292 DFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPP 351

Query: 427 DE---MCM-VGTAG-------PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 475
           D     C+ + T G       P +      LEE+P            GE+ V G  +F G
Sbjct: 352 DRPKLQCLGIPTFGVDARVIDPET------LEELP--------PGEVGEIVVHGPQVFKG 397

Query: 476 YYKNPDLTRESII--DG--WFHTGDIGQILPNGVVKIIDRKKNLIKIS 519
           Y+  P+ T E+ I  DG  +F TGD+G++   G   I DR K +I  S
Sbjct: 398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINAS 445

Length = 546

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 69.5 bits (171), Expect = 3e-12
 Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 34/191 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT 134
           TY+E  EEV  +   L A G E G RVGI+  N P+WV    A   +  I V   P Y  
Sbjct: 45  TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104

Query: 135 LGPGAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQ 186
                + + L+ +    +   D          + EL  P+  + +  +       L + +
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELA-PELATCEPGQ-------LQSAR 153

Query: 187 K---EMAVQTGIKP----YSWDEFLHLGKVNEMEILPP-----QPFNICTIMYTSGTSGD 234
                  +  G +      ++DE L LG+  +   L        P +   I YTSGT+G 
Sbjct: 154 LPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213

Query: 235 PKGVVLTHETI 245
           PKG  LTH  I
Sbjct: 214 PKGATLTHRNI 224

Length = 559

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 67.7 bits (166), Expect = 8e-12
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 36/201 (17%)

Query: 382 LRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC-----MVGTA 435
           L  V  G +P+S   + E +      F  Q YG TE     T     +        + + 
Sbjct: 283 LETVYYGASPMSPVRLAEAIERFGPIF-AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSC 341

Query: 436 GPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 490
           G  +    + L      EV         +   GE+CVRG  +  GY+  P+ T E+  DG
Sbjct: 342 GRPTPGLRVALLDEDGREVA------QGEV--GEICVRGPLVMDGYWNRPEETAEAFRDG 393

Query: 491 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY---------CVAPIIED 541
           W HTGD+ +   +G   I+DRKK++I ++ G  V    +E+V           V  + ++
Sbjct: 394 WLHTGDVAREDEDGFYYIVDRKKDMI-VTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDE 452

Query: 542 IWVYGDSLKSMLVAVVVPCEE 562
            W  G+++     AVVV    
Sbjct: 453 KW--GEAVT----AVVVLRPG 467

Length = 524

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 67.5 bits (166), Expect = 1e-11
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 10/72 (13%)

Query: 463 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 521
           GE+C RG ++  GY+ +P+ T E+I  DGW HTGD+  +   G V I+ R K++I I  G
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI-IRGG 457

Query: 522 EYVALEYLENVY 533
                   EN+Y
Sbjct: 458 --------ENIY 461

Length = 559

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 99/392 (25%), Positives = 149/392 (38%), Gaps = 91/392 (23%)

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274
           L    F     MYTSGT+G PKGV +    +A F + +   +D     +  DDV+ +   
Sbjct: 86  LDDDLF---AQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAID-----LRDDDVFWN--- 134

Query: 275 LAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
                            A  G+ +G   A+        P L  G+  VF    EG   A 
Sbjct: 135 ----------------IADPGWAYGLYYAI------TGP-LAMGITTVF---LEGGFTAE 168

Query: 335 EELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKA-------RLGGRLRLVIS 387
                L R            +G      SP A    +R + A       R+  +LR+  S
Sbjct: 169 NTYDVLER------------LGVTNFAGSPTA----YRMLMAAGADAAARIKLKLRVASS 212

Query: 388 GGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG----PVSVYSE 443
            G PL+ EV  + +      +   YG TET     V     +     AG    P+  Y  
Sbjct: 213 AGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHEVRAGSMGLPLPGYRI 270

Query: 444 LRLEEVPEMGYSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGDIGQ 499
             L++  +    PL D   G++ +   +     FSGY+ +P+ T E I   W+ TGD+ +
Sbjct: 271 AVLDDDGQ----PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGDLVE 326

Query: 500 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AV 556
              +G    I R  ++I IS G  +    +E+     P + +  V G  D L+  +V A 
Sbjct: 327 RDEDGYFWFIGRADDVI-ISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIVKAF 385

Query: 557 VVPCEEDTKKWAYSNGHAGS---FLELCSLVQ 585
           VV             G+AGS     EL   V+
Sbjct: 386 VV----------LKEGYAGSDELAEELQLFVK 407

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 65.5 bits (160), Expect = 4e-11
 Identities = 93/457 (20%), Positives = 140/457 (30%), Gaps = 103/457 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +  E+   V ++ + L A G   G RV ++  NC +WV    AC  L    + +      
Sbjct: 37  SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS 96

Query: 138 GAVNFILDHAEIDFVFVQDK-------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             V  IL      ++ V           +   + PD     R   +V   +         
Sbjct: 97  HEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPG 156

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT-SGTSGDPKGV------VLTHE 243
            +  +        L                +   +++T SGT+  PK V      +L H 
Sbjct: 157 ARVQLFA------LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHA 210

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNA 303
                  G D              V L+ LP                G   G+       
Sbjct: 211 RAIARAYGYD-----------PGAVLLAALPFC--------------GV-FGF------- 237

Query: 304 LRDDLMELKPTLLAGVPRVFEKIHEGIK--KALEELR--------PLRRRIFDALKLAWM 353
                  L   L  G P V E + +  +  +AL   R         + RRI D       
Sbjct: 238 -----STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG---- 288

Query: 354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL-----STEVEEFLRVTCCAFL 408
                +R   P A L  F      LG    L  + G PL     S+EV+  +        
Sbjct: 289 -----ERADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALV-------- 335

Query: 409 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR 468
                      P T      +      G      E R+        + L D   GE+ +R
Sbjct: 336 --------ALQPATDPVSVRI----EGGGRPASPEARVRARDPQDGALLPDGESGEIEIR 383

Query: 469 GKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNG 504
             +L  GY  NPD T  ++  DG+F TGD+G    +G
Sbjct: 384 APSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420

Length = 540

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 64.7 bits (158), Expect = 6e-11
 Identities = 48/202 (23%), Positives = 74/202 (36%), Gaps = 68/202 (33%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++   L+  G   G RV +Y  N PQ+V A  A      + VP+      
Sbjct: 3   TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  IL+ +                          RV++  + L               
Sbjct: 63  AELEHILNDSG------------------------ARVLIVGSEL--------------- 83

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFL 256
                       +++ ++P          YTSGT+G PKG + TH T +AT  +      
Sbjct: 84  ------------DDVAVIP----------YTSGTTGLPKGCMHTHRTVLATAAASAAWSG 121

Query: 257 DQFEDKMTVDDVYLSFLPLAHI 278
                 +T D V L+FLPL H+
Sbjct: 122 ------LTPDSVLLAFLPLFHV 137

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 64.8 bits (158), Expect = 6e-11
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 28/180 (15%)

Query: 380 GRLRLVISGGAPLSTE-----VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV-- 432
             L  + +GGAP + E     +++ + +        G+G++E    T      +  ++  
Sbjct: 252 RHLTALFTGGAPHAAEDILGWLDDGIPMVD------GFGMSE--AGTVFGMSVDCDVIRA 303

Query: 433 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESI 487
             G AG  +   + R+  V + G    +D P G   E+ +RG  L  GY++ P  T  + 
Sbjct: 304 KAGAAGIPTPTVQTRV--VDDQG----NDCPAGVPGELLLRGPNLSPGYWRRPQATARAF 357

Query: 488 I-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
             DGWF TGDI +   +G   ++DRKK++  IS GE V    +E V    P I +  V G
Sbjct: 358 TGDGWFRTGDIARRDADGFFWVVDRKKDMF-ISGGENVYPAEIEAVLADHPGIRECAVVG 416

Length = 488

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 65.6 bits (160), Expect = 7e-11
 Identities = 111/517 (21%), Positives = 175/517 (33%), Gaps = 130/517 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +  ++   L A+G  P   VGI      + V  + A        VPL      
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + ++LD + +  +  Q   + +L  P       LR +     L      +   +G  P
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLPVPA-----GLRSLC----LDEPADLLCGYSGHNP 649

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                            +   P N+  ++YTSG++G PKGV ++H  +A +V  +   L 
Sbjct: 650 E----------------VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ 693

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV---GY-YHGDLNALRDDLMEL 311
                +  DD  L     A   D  + E F     GA++         D  A    + + 
Sbjct: 694 -----LAADDSMLMVSTFA--FDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQ 746

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAF 371
             T+L  VP   + + +     +   RP R  +     L                DLLA 
Sbjct: 747 GVTVLKIVPSHLQALLQA--SRVALPRPQRALVCGGEALQV--------------DLLA- 789

Query: 372 RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 431
           R      G R                          L+  YG TE    TTV        
Sbjct: 790 RVRALGPGAR--------------------------LINHYGPTE----TTV-------- 811

Query: 432 VGTAGPVSVYSELRLEEVPEMGYSPLDDP--------------PC-----GEVCVRGKTL 472
                      EL  EE    G  P+  P              P      GE+ + G  L
Sbjct: 812 ------GVSTYELSDEERD-FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGGAGL 864

Query: 473 FSGYYKNPDLTRESII------DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 524
             GY++ P LT E  +      DG   + TGD+ +   +GV++ + R  + +KI +G  +
Sbjct: 865 ARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI-RGFRI 923

Query: 525 ALEYLENVYCVAPIIEDIWV--YGDSLKSMLVAVVVP 559
            L  +E      P + +  V          LVA +VP
Sbjct: 924 ELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVP 960

Length = 3956

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 65.0 bits (159), Expect = 8e-11
 Identities = 56/195 (28%), Positives = 80/195 (41%), Gaps = 42/195 (21%)

Query: 382  LRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 435
            LR V +G   +  E  +       +R+      ++GYG+TET  P            GT 
Sbjct: 909  LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTET-APVIALNTPMHNKAGTV 961

Query: 436  GPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIIDGW 491
            G +    E RLE VP  + G         G + VRG  +  GY +  NP    E   DGW
Sbjct: 962  GRLLPGIEYRLEPVPGIDEG---------GRLFVRGPNVMLGYLRAENPG-VLEPPADGW 1011

Query: 492  FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS 551
            + TGDI  I   G + I  R K   KI+ GE ++L  +E       +  ++W        
Sbjct: 1012 YDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEE------LAAELWPDALH--- 1061

Query: 552  MLVAVVVPCEEDTKK 566
               AV +P   D +K
Sbjct: 1062 --AAVSIP---DARK 1071

Length = 1140

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 48/212 (22%), Positives = 73/212 (34%), Gaps = 28/212 (13%)

Query: 75  VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT 134
             +T+ E Y    ++ SAL   G   G  V +   N P  VEA         +   L   
Sbjct: 42  RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTR 101

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK------- 187
           L   ++ F+L H E   + V D +  E+           + +V                 
Sbjct: 102 LDAASIAFMLRHGEAKVLIV-DTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL 160

Query: 188 --EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
             E  + +G   ++W              LP   ++   + YTSGT+G+PKGVV  H   
Sbjct: 161 DYEAFLASGDPDFAW-------------TLPADEWDAIALNYTSGTTGNPKGVVYHHRGA 207

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                      +     M    VYL  LP+ H
Sbjct: 208 YLNALS-----NILAWGMPKHPVYLWTLPMFH 234

Length = 545

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 106/454 (23%), Positives = 166/454 (36%), Gaps = 73/454 (16%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +V ++ +ALR  G +   RV +   +   +  A        ++ V L   L  
Sbjct: 32  SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L+ +    VFV   ++  ++      +  L   V      A + ++A       
Sbjct: 92  DDYAYMLEDSRARVVFVS-GELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI---ATFVSGVDL 254
               E L      + +    Q  +    +Y+SG++G PKGVV TH      A   +   L
Sbjct: 144 ----ELLATE-SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
            + +       DDV  S   L           FF  G          NAL         T
Sbjct: 199 GIRE-------DDVVFSAAKL-----------FFAYGLG--------NAL---------T 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASP--LADLLAFR 372
               V         G    L   RP    +FD L+     + Y      P   A +LA  
Sbjct: 224 FPMSV---------GATTVLMGERPTPDAVFDRLRRHQPTIFY----GVPTLYAAMLADP 270

Query: 373 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 432
            + A    RLRL  S G  L  EV +  +      +V G G TE         P ++   
Sbjct: 271 NLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDV-RY 329

Query: 433 GTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 491
           GT+G PV  Y   RL  V + G       P GE+ + G +  + Y+ N   TR++    W
Sbjct: 330 GTSGKPVPGY---RLRLVGDGGQDVAAGEP-GELLISGPSSATMYWNNRAKTRDTFQGEW 385

Query: 492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 525
             +GD      +G      R  +++K+S G YV+
Sbjct: 386 TRSGDKYVRNDDGSYTYAGRTDDMLKVS-GIYVS 418

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 63.4 bits (155), Expect = 2e-10
 Identities = 69/299 (23%), Positives = 108/299 (36%), Gaps = 93/299 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +      +        ++     V + +LP  H       
Sbjct: 214 FLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEE---PPVLVDWLPWNHTFGGNHN 270

Query: 279 LDRVIEEYFFRRGASVGYYHGD---LNALRD----DLMELKPTLLAGVPRVFEKIHEGIK 331
           L  V+       G +   Y  D        D    +L E+ PT+   VP+ +E     + 
Sbjct: 271 LGIVL-----YNGGT--LYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWE----MLV 319

Query: 332 KALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 391
            ALE    LRRR F                                   RL+L+   GA 
Sbjct: 320 PALERDAALRRRFF----------------------------------SRLKLLFYAGAA 345

Query: 392 LSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGPVSV 440
           LS +V + L          R+        G G+TET    T    P        AG + +
Sbjct: 346 LSQDVWDRLDRVAEATCGERIRMMT----GLGMTETAPSATFTTGPLSR-----AGNIGL 396

Query: 441 YSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGD 496
                    P  E+   P+      EV V+G  +  GY++ P+LT E+  + G++ +GD
Sbjct: 397 -------PAPGCEVKLVPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD 446

Length = 614

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 62.6 bits (153), Expect = 4e-10
 Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 38/173 (21%)

Query: 382  LRLVISGGAPLSTEVEEFLRVTCCAF-------LVQGYGLTETCGPTTVCFPDEMC---- 430
            LRLV++G   L  EV +       AF       +++GYG TET    +V  PD +     
Sbjct: 900  LRLVVAGAEKLKPEVAD-------AFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952

Query: 431  --------MVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 481
                     VG   P V+V    R+  V    +  L     G + + G  +  GY  +P+
Sbjct: 953  RQTGSKEGSVGMPLPGVAV----RI--VDPETFEELPPGEDGLILIGGPQVMKGYLGDPE 1006

Query: 482  LTRESIID----GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 530
             T E I D    GW+ TGD G +  +G + I DR     KI  GE V L  +E
Sbjct: 1007 KTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058

Length = 1146

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 61.5 bits (150), Expect = 6e-10
 Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 50/175 (28%)

Query: 382 LRLVISGGAPLSTEV-EEF--------LRVTCCAFLVQGYGLTETCGPTTVCFP------ 426
           +RL+ +G  P+S ++ EEF        LR      +   YGL E      V FP      
Sbjct: 230 VRLIFNGAEPISADLCEEFLEKMAPFGLRPNA---MYPVYGLAEAT--LAVSFPKPGEPF 284

Query: 427 ------------------------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC 462
                                   D +  V    P+    E+R+  V + G   L D   
Sbjct: 285 KTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPID-GCEIRI--VDDAGEV-LPDRTI 340

Query: 463 GEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLI 516
           G + ++G  + SGYY NP+ T++SI  DGW  TGD+G +  NG + I  R K++I
Sbjct: 341 GHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDII 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.3 bits (149), Expect = 9e-10
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 456 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 515
           P D    G++ VRG  +   Y++        ++DGWF TGD+  I  +G ++I DR K++
Sbjct: 378 PWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDV 434

Query: 516 IKISQGEYVALEYLENV 532
           IK S GE+++   +ENV
Sbjct: 435 IK-SGGEWISSIDIENV 450

Length = 539

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 60.7 bits (148), Expect = 1e-09
 Identities = 52/204 (25%), Positives = 76/204 (37%), Gaps = 32/204 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I + L+A G  PG RV +       +V A   C     I VP       
Sbjct: 25  TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83

Query: 138 GA----VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           G     +  IL  A    V      V   L     +   L +++      A     A+  
Sbjct: 84  GRHLARLAAILADAGARAVLT-TSAVLAALRAALAAPAALLLLLIAADDLA-----ALAA 137

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                 W               PP P +I  + YTSG++G PKGV++TH  +   ++ + 
Sbjct: 138 A----DW------------RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNL---LANLR 178

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
                F   +  DDV +S+LPL H
Sbjct: 179 AIARAFG--LDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 58.6 bits (142), Expect = 6e-09
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 436
           L+L+  GGA  S      +       L Q +G+ E      V +     P E+       
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG----LVNYTRLDDPAEIIFTTQGR 355

Query: 437 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 495
           P+S   E+R+  V + G +P+     G +  RG   F GYYK P+    +   +G+++TG
Sbjct: 356 PMSPDDEVRV--VDDHG-NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412

Query: 496 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 541
           D+ ++ P G + ++ R K+ I    GE +A E +EN+    P + D
Sbjct: 413 DLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHD 457

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 58.5 bits (142), Expect = 7e-09
 Identities = 84/348 (24%), Positives = 135/348 (38%), Gaps = 84/348 (24%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI------ 278
            ++TSG++G PK V+ T   +   ++  +       +      V L ++P  H       
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP--REPDPPPPVSLDWMPWNHTMGGNAN 282

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + ++      +   G  + G +   +  LR    E+ PT+   VP  +  + E    A+
Sbjct: 283 FNGLLWGGGTLYIDDGKPLPGMFEETIRNLR----EISPTVYGNVPAGYAMLAE----AM 334

Query: 335 EELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 394
           E+   LRR  F  L+L    M Y                              GGA LS 
Sbjct: 335 EKDDALRRSFFKNLRL----MAY------------------------------GGATLSD 360

Query: 395 EVEEFLRVTCCA------FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE 448
           ++ E ++               GYG TET  PTT     +   VG  G      EL+L  
Sbjct: 361 DLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLPLPGVELKL-- 417

Query: 449 VPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL-PN 503
                       P G   EV V+G  +  GY+K+P+LT  +   +G++  GD  + + P+
Sbjct: 418 -----------APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPD 466

Query: 504 GVVK--IID-RKKNLIKISQGEYVALEYL--ENVYCVAPIIEDIWVYG 546
              K  I D R     K+S G +V++  L  + V   +P+I D  V G
Sbjct: 467 DPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAG 514

Length = 624

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 58.0 bits (141), Expect = 9e-09
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 463 GEVCVRGKTLFSGYYKNPDLTRESIIDG-----WFHTGDIGQILPNGVVKIIDRKKNLIK 517
           GE+ + G  +  GY+ +P+LT E  I        + TGD+G+  P+G ++ + R  + +K
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386

Query: 518 ISQGEYVALEYLENVYCVAPIIED--IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAG 575
           I  G  V L  +E      P ++   + V GD     L A VV  +      A       
Sbjct: 387 IR-GYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDAAVLRAALA 445

Query: 576 SFL 578
             L
Sbjct: 446 ELL 448

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 43/186 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY ++ + + + + A  A G   G  V +   N P+ + A+ A     L    L+    P
Sbjct: 39  TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH----P 94

Query: 138 -GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
            G+++   DHA +    ++D  +  L+       +R   ++            A    +K
Sbjct: 95  LGSLD---DHAYV----LEDAGISTLIVDPAPFVERALALL------------ARVPSLK 135

Query: 197 PYSWDEFLHLGKVNEMEIL-------PPQPF-------NICTIMYTSGTSGDPKGVVLTH 242
                  L LG V +   L        P P        +I  + YT GT+G PKGV+ TH
Sbjct: 136 -----HVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTH 190

Query: 243 ETIATF 248
            +IAT 
Sbjct: 191 RSIATM 196

Length = 524

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 57.6 bits (140), Expect = 1e-08
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 30/165 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I +ALRA+G  PG  V +      + + A+          VP+      
Sbjct: 14  TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                IL  A    V       +         A  L V+                     
Sbjct: 74  ERRAAILARAGARAVLTDPGLAQP------EEAPDLLVVAD------------------- 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
              D                 P ++  +++TSG++G+PKGV++TH
Sbjct: 109 ---DAAAAESP--APPPPRVDPDDLAYVIFTSGSTGEPKGVMITH 148

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 58.0 bits (141), Expect = 1e-08
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 28/197 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   L A G  PG  VGIY  N  ++VEAM        + V +      
Sbjct: 30  TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVE 89

Query: 138 GAVNFILDHAEIDFVFVQDK---KVKELLSPDCRSAQRLRVMVCF-TSLTAEQKEMAVQT 193
             + ++LD ++   +  + +   +V E+L        +LR +V        +    AV  
Sbjct: 90  DELRYLLDDSDAVALVYEREFAPRVAEVLP----RLPKLRTLVVVEDGSGNDLLPGAV-- 143

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                 +++ L  G   E +     P ++  ++YT GT+G PKGV+   E         D
Sbjct: 144 -----DYEDALAAGS-PERDFGERSPDDL-YLLYTGGTTGMPKGVMWRQE---------D 187

Query: 254 LFLDQFE--DKMTVDDV 268
           +F       D  T + +
Sbjct: 188 IFRVLLGGRDFATGEPI 204

Length = 533

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 57.7 bits (139), Expect = 2e-08
 Identities = 80/358 (22%), Positives = 130/358 (36%), Gaps = 66/358 (18%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            P N+  ++YTSG++G PKGV + H  ++  +  +          + V D  L F   +  
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS-- 3247

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D  +EE F     GA V         L        P LL  +                 
Sbjct: 3248 FDVFVEELFWPLMSGARV--------VLAGPEDWRDPALLVEL----------------- 3282

Query: 337  LRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 396
               +     D L              S L   L   +  A     L+ ++ GG  L  ++
Sbjct: 3283 ---INSEGVDVLHAYP----------SMLQAFLE--EEDAHRCTSLKRIVCGGEALPADL 3327

Query: 397  EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL--RLEEVPEMGY 454
            ++  +V     L   YG TE     T+      C+      V +   +  R   + +   
Sbjct: 3328 QQ--QVFAGLPLYNLYGPTEA----TITVTHWQCVEEGKDAVPIGRPIANRACYILDGSL 3381

Query: 455  SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNGVVK 507
             P+     GE+ + G+ L  GY+  P LT E  +   F        TGD+ +   +GV++
Sbjct: 3382 EPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIE 3441

Query: 508  IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTK 565
             I R  + +KI +G  + L  +E      P + +  V     +  LVA VVP +E   
Sbjct: 3442 YIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQ-LVAYVVPEDEAGD 3497

Length = 5163

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 49/222 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   W T++E+   V  + +AL A G   G R+ ++  NC Q  E+M A   L  + VP 
Sbjct: 29  GDRSW-TWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVP- 86

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------- 182
                    NF     E+ ++                 A   R M+C             
Sbjct: 87  --------TNFRQTPDEVAYL---------------AEASGARAMICHADFPEHAAAVRA 123

Query: 183 TAEQKEMAVQTGIKPY--SWDEFL--HLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKG 237
            +      V  G       ++  +  HLG +V    +    P   C   +TSGT+G PK 
Sbjct: 124 ASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDP---CWFFFTSGTTGRPKA 180

Query: 238 VVLTHETIATFVSG--VDLFLDQFEDKMTVDDVYLSFLPLAH 277
            VLTH  +A  ++    DL         T  D  L   PL+H
Sbjct: 181 AVLTHGQMAFVITNHLADLMPG-----TTEQDASLVVAPLSH 217

Length = 528

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.9 bits (137), Expect = 3e-08
 Identities = 102/465 (21%), Positives = 161/465 (34%), Gaps = 109/465 (23%)

Query: 78   TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            TY E+     ++  AL A G  P   VGI          AME   +  ++ V L   L  
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGI----------AME--RSAEMM-VGLLAVLKA 4624

Query: 138  GAVNFILDHAEIDF------VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
            G     LD    ++        ++D     LL+      QRL +     SL  ++ E   
Sbjct: 4625 GGAYVPLD---PEYPRERLAYMMEDSGAALLLT-QSHLLQRLPIPDGLASLALDRDE--- 4677

Query: 192  QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                    W+     G       +   P N+  ++YTSG++G PKGV ++H +    V+ 
Sbjct: 4678 -------DWE-----GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGS---LVNH 4722

Query: 252  VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASVGYYHGDLNALRDDLM 309
            +    +++E  +T DD  L F+  +   D   E  +     GASV         +RDD +
Sbjct: 4723 LHATGERYE--LTPDDRVLQFMSFS--FDGSHEGLYHPLINGASV--------VIRDDSL 4770

Query: 310  ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLL 369
                 L A       +IHE            R  +     +    +           +  
Sbjct: 4771 WDPERLYA-------EIHEH-----------RVTVLVFPPVYLQQLAEHAERD---GEPP 4809

Query: 370  AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET--------CGPT 421
            + R               G A      +   R     +L  GYG TET            
Sbjct: 4810 SLRVY----------CFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDG 4859

Query: 422  TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 481
              C    M +    G  S Y       V +   +PL     GE+ + G+ +  GY + P 
Sbjct: 4860 DACGAAYMPIGTPLGNRSGY-------VLDGQLNPLPVGVAGELYLGGEGVARGYLERPA 4912

Query: 482  LTRESIIDGWF--------HTGDIGQILPNGVVKIIDRKKNLIKI 518
            LT E  +   F         TGD+ +   +GV+  + R  + +KI
Sbjct: 4913 LTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKI 4957

Length = 5163

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 56.3 bits (135), Expect = 3e-08
 Identities = 97/486 (19%), Positives = 155/486 (31%), Gaps = 84/486 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLG 136
           TY EVY+   +++  LRA G   G RV   G N  + +EA        +++       L 
Sbjct: 26  TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT-ANPRLS 84

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P  + +IL+HAE   +         LL            +          +        K
Sbjct: 85  PKEIAYILNHAEDKVLLFD----PNLLPL---VEAIRGELKTVQHFVVMDE--------K 129

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
                         E + +       C + YT+GT+G PKGVV +H  +        L  
Sbjct: 130 APEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD 189

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR---------DD 307
                +  V    L  +P+ H+         +    +                     + 
Sbjct: 190 GTALSEKDV---VLPVVPMFHVNAWC---LPY----AATLVGAKQVLPGPRLDPASLVEL 239

Query: 308 LMELKPTLLAGVPRVFEKI---HEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASP 364
                 T  AGVP V+  +    E     L       RR+        +  G     ++ 
Sbjct: 240 FDGEGVTFTAGVPTVWLALADYLESTGHRL----KTLRRL--------VVGG-----SAA 282

Query: 365 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC--GPTT 422
              L+A  +        + +    G    TE                  +          
Sbjct: 283 PRSLIARFER-----MGVEVRQGYGL---TET---------------SPVVVQNFVKSHL 319

Query: 423 VCFPDEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 481
               +E  + +     + +          E    P D    GEV ++G  +  GYY N +
Sbjct: 320 ESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEE 379

Query: 482 LTR-ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 540
            TR     DG+F TGDI      G V+I DR K+LIK   GE+++   LEN     P ++
Sbjct: 380 ATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHPKVK 438

Query: 541 DIWVYG 546
           +  V  
Sbjct: 439 EAAVVA 444

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 55.6 bits (135), Expect = 4e-08
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 38/160 (23%)

Query: 382 LRLVISGGAPLSTEVEEFLR---VTC-CAFLVQGYGLTETCGPTTVCFP--DEMCMVGTA 435
           L+ V+ GGA +  E+ E      + C C     GYGLTE    +TVC    D +  VG+ 
Sbjct: 242 LKAVLLGGAAIPVELTEQAEQQGIRCWC-----GYGLTEMA--STVCAKRADGLAGVGSP 294

Query: 436 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP---DLTRESIIDGWF 492
            P     E++L +              GE+ +RG +L  GY++      L  +   +GWF
Sbjct: 295 LP---GREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVND---EGWF 334

Query: 493 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 532
            T D G+   NG + I+ R  NL   S GE +  E +E V
Sbjct: 335 ATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQPEEIERV 372

Length = 458

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 55.5 bits (134), Expect = 5e-08
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 436
           LRL+  GGA LS  +   +       L Q +G+ E      V +     P E+ ++ T G
Sbjct: 307 LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEG----LVNYTRLDDPPEI-IIHTQG 361

Query: 437 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT 494
            P+S   E+R+  V   G +P+     GE+  RG     GYY+ P+    +   DG++ +
Sbjct: 362 RPLSPDDEVRV--VDADG-NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRS 418

Query: 495 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSL--- 549
           GD+ +  P+G + +  R K+ I    GE +A E +EN+    P + D  +    D L   
Sbjct: 419 GDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGE 477

Query: 550 KSMLVAVVVPCEEDTK 565
           KS   A +V  E   +
Sbjct: 478 KS--CAFIVVKEPPLR 491

Length = 542

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.2 bits (133), Expect = 7e-08
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           T+  +      +  AL    G     RVG    NC + +E + A   +  +  PL   L 
Sbjct: 40  TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              +  I++HAE D V V D ++ E L    +    +R +V      A+     +  GIK
Sbjct: 100 NDQIVHIINHAE-DEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIK 158

Query: 197 PYSWDEFLHLGKVNEMEILPPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            YS++  L  G+    +  P         I Y++GT+G PKGVV +H   + ++  + L 
Sbjct: 159 VYSYEALLD-GRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHR--SLYLQSLSLR 214

Query: 256 -LDQFEDKMTVDDVYLSFLPLAHIL 279
             D     +T  + +L  +P+ H+L
Sbjct: 215 TTDSL--AVTHGESFLCCVPIYHVL 237

Length = 576

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 54.7 bits (132), Expect = 9e-08
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 382 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV---GTAG- 436
           LR   + G PL+ EV   F   T    L++G+G TET    T+       M    G+ G 
Sbjct: 303 LRYCTTAGEPLNPEVFNTFKEKTGIK-LMEGFGQTET----TLTIATFPWMEPKPGSMGK 357

Query: 437 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR---GKT--LFSGYYKNPDLTRESIIDGW 491
           P   Y    ++ +   G    +    GE+ +R   GK   LF GYY++P+ T E   DG+
Sbjct: 358 PSPGYD---IDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGY 413

Query: 492 FHTGDIGQILPNGVVKIIDRKKNLIKIS 519
           +HTGD   +  +G +  + R  +LIK S
Sbjct: 414 YHTGDTAWMDEDGYLWFVGRADDLIKSS 441

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ + L A G  PG RV +   NCP+++ A  A N L  + VP+   L  
Sbjct: 5   TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 138 GAVNFILDHAEIDFVFV 154
             +  ILDH+    + V
Sbjct: 65  EELAHILDHSGARLIVV 81

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 8/62 (12%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL----DQFEDKMTVDDVYLSFLPLA 276
           ++  IMY+SGT+G  KGVVLTH      ++ V+LF+     Q+E   + D+VYL+ LP+ 
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHR---NLIAMVELFVRFEASQYEYPGS-DNVYLAALPMF 254

Query: 277 HI 278
           HI
Sbjct: 255 HI 256

Length = 560

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 67/321 (20%), Positives = 109/321 (33%), Gaps = 76/321 (23%)

Query: 218  QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               N+  ++YTSG++G PKGV + H  +A  +  +         ++  +D  L F+  + 
Sbjct: 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWI-----AEAYELDANDRVLLFMSFS- 3288

Query: 278  ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              D   E +                           TL+ G   V   + +      EEL
Sbjct: 3289 -FDGAQERFL-------------------------WTLICGGCLV---VRDNDLWDPEEL 3319

Query: 338  RPL--RRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST- 394
                   RI                  + L                L + + GG  +   
Sbjct: 3320 WQAIHAHRI-SIACFP----------PAYLQQFAEDAGGAD--CASLDIYVFGGEAVPPA 3366

Query: 395  EVEEFLRVTCCAFLVQGYGLTET--------CGPTTVCFPDEMCMVGTAGPVSVYS-ELR 445
              E+  R      L  GYG TE         CG   VC      +       S+Y  + +
Sbjct: 3367 AFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQ 3426

Query: 446  LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------TGDI 497
            L  VP +G +       GE+ + G  L  GY++ P LT E  +   F         TGD+
Sbjct: 3427 LNPVP-VGVA-------GELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDL 3478

Query: 498  GQILPNGVVKIIDRKKNLIKI 518
             +   +GV++ + R  + +KI
Sbjct: 3479 ARYRADGVIEYLGRIDHQVKI 3499

Length = 3956

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 455 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 514
            PL +   G +CVRG +L SGY+++ +       DGW  TGD+G +L +G + I  R K+
Sbjct: 404 MPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-DGYLYITGRAKD 462

Query: 515 LIKI 518
           LI I
Sbjct: 463 LIII 466

Length = 579

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 5/53 (9%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
           I ++SG++G+PKGV+LTH+ + T +  +         ++T +DV+LS++PL H
Sbjct: 111 IQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA-----EITSEDVFLSWMPLTH 158

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 23/158 (14%)

Query: 380 GRLRLVISGGAPLSTE-VEEFLRVTC-----CAFLVQGYGLTETCGPTTVCFP------D 427
           G LR+ ++GG P+  +  E F                 YGL E+    TV  P      D
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331

Query: 428 EMCMVGTAGP--VSVYSE----LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 481
           E+     +G    +V       + +   P  G + +     GE+ +RG ++ SGY     
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAP 391

Query: 482 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 519
           +      D WF TGD+G ++  G+V +  R K LI ++
Sbjct: 392 IDP----DDWFPTGDLGYLVDGGLV-VCGRAKELITVA 424

Length = 525

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 53.4 bits (128), Expect = 4e-07
 Identities = 67/316 (21%), Positives = 109/316 (34%), Gaps = 67/316 (21%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              N+  ++YTSG++G PKGV ++H  +                +++  D  L F+  +  
Sbjct: 2145 GENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAA-----GERYELSPADCELQFMSFS-- 2197

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D   E++F     GA V         +RDD +     L   + R       G+      
Sbjct: 2198 FDGAHEQWFHPLLNGARV--------LIRDDELWDPEQLYDEMER------HGVTIL--- 2240

Query: 337  LRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGR--LRLVISGGAPLST 394
                                       P   L    +   R G    +R+   GG  +  
Sbjct: 2241 -------------------------DFPPVYLQQLAEHAERDGRPPAVRVYCFGGEAVPA 2275

Query: 395  E-VEEFLRVTCCAFLVQGYGLTETCGPTTV--CFPDEMCMVGTAG-PVSVYSELRLEEVP 450
              +          +L  GYG TE      +  C P + C  G A  P+      R   + 
Sbjct: 2276 ASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC--GAAYVPIGRALGNRRAYIL 2333

Query: 451  EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF--------HTGDIGQILP 502
            +   + L     GE+ + G+ L  GY   P LT E  +   F         TGD+ +   
Sbjct: 2334 DADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRA 2393

Query: 503  NGVVKIIDRKKNLIKI 518
            +GVV+ + R  + +KI
Sbjct: 2394 DGVVEYLGRIDHQVKI 2409

Length = 5163

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 74/376 (19%), Positives = 118/376 (31%), Gaps = 106/376 (28%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD---- 280
           I++TSG++G PKGVV TH T   F + +D     +   +   D  L+  P   +      
Sbjct: 90  ILFTSGSTGPPKGVVYTHRT---FAAQIDALRSLYG--IREGDRDLAAFPPFALFGPALG 144

Query: 281 --RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
              VI        A++     D   L   + E+  + + G P + + +    +   E   
Sbjct: 145 VTTVIPAMDPTAPAAL-----DPAKLAQAIREIGASCVFGSPALLKNV---ARYCEENGI 196

Query: 339 PLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE 398
            L                                         LR V+S GAP+  ++  
Sbjct: 197 QLPS---------------------------------------LRRVLSAGAPVPPDLLR 217

Query: 399 FLRVTCCAFLVQG------YGLTETCGPTTVCFPDEM--------------CMVGTAGPV 438
                  A L+        YG TE   P       E+              C VG   P 
Sbjct: 218 RFV----ANLMPEAEIHTPYGATE-ALPVASIEGREVLAESAEPPEAGAGVC-VGHPVPG 271

Query: 439 SVYSELRLEEVP-EMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESIID----GW 491
                + +++ P       ++ PP   GE+ V G  +   YY  P+ T+ + I      W
Sbjct: 272 IDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIW 331

Query: 492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEY------VALEYLENVYCVA--PIIEDIW 543
              GD+G     G +    RK + ++ + G                V   A   +     
Sbjct: 332 HRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSALVGV----- 386

Query: 544 VYGDSLKSMLVAVVVP 559
             G       V VV P
Sbjct: 387 --GKPGTQAPVLVVEP 400

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 31/164 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V ++ + LR  G   G R+ +   N    V    AC  +  I VPL      
Sbjct: 24  TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL------ 77

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N+ L  +E+D   +QD + + LL  D  +A R   +    +  A     A++    P
Sbjct: 78  ---NWRLSASELD-ALLQDAEPRLLLGDDAVAAGRT-DVEDLAAFIASAD--ALEPADTP 130

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
                            +PP+  ++  I++TSGTSG PKGV+L+
Sbjct: 131 S----------------IPPERVSL--ILFTSGTSGQPKGVMLS 156

Length = 488

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 18/101 (17%)

Query: 463 GEVCVRGKTLFSGYYKNP-----------------DLTRESIIDGWFHTGDIGQILPNGV 505
           GE+ VRG  + + YY +P                 D       DGW  TGD+G +  +G 
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445

Query: 506 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
           + I DR +++I+ S GE++    LEN    AP + +  V G
Sbjct: 446 LTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVVECAVIG 485

Length = 576

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 52.2 bits (126), Expect = 7e-07
 Identities = 48/182 (26%), Positives = 67/182 (36%), Gaps = 48/182 (26%)

Query: 380 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGLTETC----------G 419
              R+  +G  P+  + +E F       F   G         YGL E            G
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAE----RFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAG 325

Query: 420 PTTVCFPDEMCMVGTAGP-----------VSVYSELRLEEV----PEMGYSPLDDPPCGE 464
           P  +    +    G A             VS    L   EV    PE    PL D   GE
Sbjct: 326 PVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPE-TRRPLPDGEVGE 384

Query: 465 VCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRKKNLIK 517
           + VRG ++ +GY+  P+ T E+          GW  TGD+G  L +G + +  R K+LI 
Sbjct: 385 IWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG-FLHDGELYVTGRLKDLII 443

Query: 518 IS 519
           I 
Sbjct: 444 IR 445

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  + LR  G   G RV ++  NCPQ+         L  + VP+      
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------TAEQKEM 189
             +++ L+ A  + +   D+     +    R+   LR  V  TSL        T    + 
Sbjct: 120 HELSYELNDAGAEVLLALDQLAP--VVEQVRAETSLR-HVIVTSLADVLPAEPTLPLPDS 176

Query: 190 AVQTGIKPYSWDEFL-HLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHE---- 243
                +      + L  L        LP P    +  + YT GT+G PKG   T      
Sbjct: 177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY 236

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           T A     V +   +       D V+LSFLP 
Sbjct: 237 TAAAAY-AVAVVGGE-------DSVFLSFLPE 260

Length = 567

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 35/168 (20%)

Query: 381 RLRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 434
           RLR V++G   L    ++       LR+      ++GYG+TE C P            GT
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRI------LEGYGVTE-CAPVVSINVPMAAKPGT 532

Query: 435 AGPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIID- 489
            G +    + RL  VP  E G         G + ++G  + +GY +   P +      + 
Sbjct: 533 VGRILPGMDARLLSVPGIEQG---------GRLQLKGPNIMNGYLRVEKPGVLEVPTAEN 583

Query: 490 -------GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 530
                  GW+ TGDI +    G V+I  R K   KI+ GE V+LE +E
Sbjct: 584 ARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVE 630

Length = 718

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 90/456 (19%), Positives = 142/456 (31%), Gaps = 122/456 (26%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E   +  + L + G   G RV       P+   A      L  +  PL+   GP
Sbjct: 2   SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                I D  E+                        +V++    L    +    +     
Sbjct: 62  EP---IRDRLEL---------------------GEAKVLITTPEL---YERTDPEDPA-- 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                 LH                     +TSGT+G PKGV+  H  +    +     LD
Sbjct: 93  -----LLH---------------------FTSGTTGKPKGVLHVHRAVVAHYATARYVLD 126

Query: 258 QFEDKM---TVDD------VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR--D 306
              D +   T D        Y    PL +             G ++    G+ +A R   
Sbjct: 127 LRPDDVYWCTADPGWVTGTSYGIIAPLLN-------------GVTLVVDEGEFDAERWYG 173

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLA 366
            L E K T+    P                LR L R                       A
Sbjct: 174 ILEEEKVTVWYTAPTA--------------LRMLMR-----------------------A 196

Query: 367 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 426
                 +        LR + S G PL+ EV  +        +   +  TET       +P
Sbjct: 197 GPELAARYDL---SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYP 253

Query: 427 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRG--KTLFSGYYKNPDLT 483
                 G+ G      E  + E    G +P+  P   GE+ ++    ++F GY  N +  
Sbjct: 254 GIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERY 313

Query: 484 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 519
             S +DGW+ TGD+     +G    + R  ++IK +
Sbjct: 314 ASSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTA 349

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 397 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP----VSVYSELRLEEVP-- 450
            EF R   C  +  GYG +E          +     G+ G     V++Y+   L E    
Sbjct: 281 AEFSRRFGCQ-VEDGYGSSEGAVIVV---REPGTPPGSIGRGAPGVAIYNPETLTECAVA 336

Query: 451 ---EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 506
                G     D   GE V   G   F GYY NP+ T E +  G + +GD+     +G +
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWI 396

Query: 507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
               R  + +++  GE ++   +E +    P I  + VY 
Sbjct: 397 YFAGRTADWMRVD-GENLSAAPIERILLRHPAINRVAVYA 435

Length = 540

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 12/184 (6%)

Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSV 440
           LR VI   AP   +V+  +       + + YG TE+ G  T    ++ +   GT G  + 
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTES-GAVTFATSEDALSHPGTVGKAAP 331

Query: 441 YSELRLEEVPEMGYSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIG 498
            +ELR   V E G  PL     GE+  R  G   F+ Y+  P+   E    G+  +GD+G
Sbjct: 332 GAELRF--VDEDG-RPLPQGEIGEIYSRIAGNPDFT-YHNKPEKRAEIDRGGFITSGDVG 387

Query: 499 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 555
            +  +G + + DRK++++ IS G  +    +E V    P + D  V+G         L+A
Sbjct: 388 YLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMA 446

Query: 556 VVVP 559
           VV P
Sbjct: 447 VVEP 450

Length = 509

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 58/171 (33%), Positives = 80/171 (46%), Gaps = 32/171 (18%)

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VD-----LFLDQFEDKMTVDDVYLSFLPLAHI-- 278
           Y+SGT+G PKGV+LTH+ + T V+  VD     L+          DDV L  LP+ HI  
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-------FHSDDVILCVLPMFHIYS 238

Query: 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRV---FEKIHEGIKKAL 334
           L+ V+     R GA++      ++ AL + +   K T+   VP +     K     K  L
Sbjct: 239 LNSVLLCG-LRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDL 297

Query: 335 EELR-------PLRRRIFDAL--KL--AWMNMGYKQREASP-LADLLAFRK 373
             +R       PL + + DA   KL  A +  GY   EA P LA  LAF K
Sbjct: 298 SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAK 348

Length = 537

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 31/177 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++      Q+  AL A G EPG RVG    N  + +EA    +    +C  +   L P
Sbjct: 41  TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP 100

Query: 138 GAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM--- 189
             + +I++HAE      D  F+    + + L+P C + +    M     L A    +   
Sbjct: 101 EQIAYIVNHAEDRYVLFDLTFL---PLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCY 157

Query: 190 ----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                 Q G   Y W  F      +E      Q  ++C   YTSGT+G+PKG + +H
Sbjct: 158 ETLVGAQDG--DYDWPRF------DEN-----QASSLC---YTSGTTGNPKGALYSH 198

Length = 539

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 50.3 bits (121), Expect = 3e-06
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 40/188 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V ++ +ALR  G +PG RV  Y  N P+ V AM A  ++  I   C P    
Sbjct: 88  SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144

Query: 135 LGPGAVNFILDHAE---------IDFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G  AV   LD            +D      K      K+ E++   P       L  +V
Sbjct: 145 FGVEAV---LDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS------LEAVV 195

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--PPQPFN-ICTIMYTSGTSGD 234
               L++       Q     +S    L     +    L     PF+    I+Y+SGT+G 
Sbjct: 196 VVPYLSS-----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGL 250

Query: 235 PKGVVLTH 242
           PK +V   
Sbjct: 251 PKCIVHGA 258

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 13/173 (7%)

Query: 382 LRLVISG-GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPV 438
           LR+V    GAP   ++  F R   C  +V G+G TE  G      PD     +      V
Sbjct: 269 LRIVYGNEGAP--GDIARFARRFGCV-VVDGFGSTEG-GVAITRTPDTPPGALGPLPPGV 324

Query: 439 SVYSELRLEEVP----EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFH 493
           ++       E P      G     D   GE V   G   F GYY +P+   E +  G + 
Sbjct: 325 AIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYW 384

Query: 494 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
           +GD+     +G      R  + +++  GE +    +E +    P   ++ VY 
Sbjct: 385 SGDLAYRDADGYAYFAGRLGDWMRVD-GENLGTAPIERILLRYPDATEVAVYA 436

Length = 529

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 38/181 (20%)

Query: 385 VISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 441
           V+ GG P    V +      +     +V+ YG++ET G    C  D + + G        
Sbjct: 156 VLVGGGPAPAPVLDAAAAAGIN----VVRTYGMSETSGG---CVYDGVPLDGV------- 201

Query: 442 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 501
             +R+E+              G + + G TL  GY +NP         GWF T D+G  L
Sbjct: 202 -RVRVED--------------GRIALGGPTLAKGY-RNPVDPDPFAEPGWFRTDDLG-AL 244

Query: 502 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVV 558
            +GV+ ++ R  + I  + G  V  + +E      P + D  V+G   D L   +VA VV
Sbjct: 245 DDGVLTVLGRADDAIS-TGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVV 303

Query: 559 P 559
            
Sbjct: 304 G 304

Length = 358

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 49.5 bits (118), Expect = 5e-06
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 19/210 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA---MEACNALSLICVPLYDT 134
           T+ + Y+   ++ SAL      PG  V +   N P   EA   +    A+ + CV +   
Sbjct: 47  TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV-VNCVNI--R 103

Query: 135 LGPGAVNFILDHAEIDFVFVQDK------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 188
           L    + F+L+H++ + V V  +      +  ++L+   +S+ +  +++     T + K 
Sbjct: 104 LNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKS 163

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           +    G     +++FL  G   E    PP   +    + YTSGT+  PKGVVL H     
Sbjct: 164 LQYALGKGAIEYEKFLETGD-PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYL 222

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                 L        M    VYL  LP+ H
Sbjct: 223 MALSNALIWG-----MNEGAVYLWTLPMFH 247

Length = 567

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 35/206 (16%)

Query: 79  YKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG 138
           Y+ +          L A G +PG RV +       +VEA  AC    L+ VPL     P 
Sbjct: 52  YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPL-----PL 106

Query: 139 AVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA-----VQT 193
            + F    + I        +++ +L+    SAQ        T    E             
Sbjct: 107 PMGFGGRESYIA-------QLRGMLA----SAQ---PAAIITP--DELLPWVNEATHGNP 150

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
            +   S   F       ++ +  P P +I  + Y+SG++  P+GV++TH  +   +  + 
Sbjct: 151 LLHVLSHAWF-KALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAIS 209

Query: 254 LFLDQFEDKMTV--DDVYLSFLPLAH 277
                  D + V   D  +S+LP  H
Sbjct: 210 H------DGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 23/175 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+Y+EV ++   LR  G   G RV IY    P+ V AM AC  +  I   ++     
Sbjct: 75  TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134

Query: 138 GAVNFILDHAE------IDFVFVQDKKV--KELLSPDCRSAQR--LRVMVCFTSLTAEQK 187
             +   +D A+        F     + V  K LL      +Q    +V++    L   Q 
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLI----LNRGQV 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVV 239
              ++ G +   W E +      +   +   P    +   I+YTSGT+G PKGVV
Sbjct: 191 PAPLKPG-RDLDWAELMA-----KARPVDCVPVESTDPLYILYTSGTTGKPKGVV 239

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 48.9 bits (117), Expect = 7e-06
 Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ EE+ +  +   + G   G +V ++  NCP+++        +  I VP+   L  
Sbjct: 39  SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 98

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL +++   +    +            A  LR  +C T +     +         
Sbjct: 99  EESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVS------ 151

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            S+ +             P    +   I++TSGT+  PKGVV+TH  +         F  
Sbjct: 152 -SFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL--------RFAG 202

Query: 258 QFED---KMTVDDVYLSFLPLAHI 278
            +      +  DDVYL+ +P  HI
Sbjct: 203 YYSAWQCALRDDDVYLTVMPAFHI 226

Length = 517

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 48.8 bits (117), Expect = 7e-06
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 36/191 (18%)

Query: 380 GRLRLVISGGAP-----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 434
            + R ++ GGAP     L    +  LR+         YG+TET        PD+      
Sbjct: 230 AQFRTILLGGAPAWPSLLEQARQLQLRLAPT------YGMTETASQIATLKPDDF----L 279

Query: 435 AGPVSVYSEL---RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 491
           AG  S    L   ++          +     G + ++ ++L  GYY  P +  +S   G 
Sbjct: 280 AGNNSSGQVLPHAQIT---------IPANQTGNITIQAQSLALGYY--PQI-LDS--QGI 325

Query: 492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSL 549
           F T D+G +   G + I+ R    I I+ GE V    +E       +++D+ V G  D  
Sbjct: 326 FETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAEVEAAILATGLVQDVCVLGLPDPH 384

Query: 550 -KSMLVAVVVP 559
              ++ A+ VP
Sbjct: 385 WGEVVTAIYVP 395

Length = 452

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 36/169 (21%)

Query: 365 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 424
             DL  +         RLR  +S G PL+ EV E ++      +  GYG TET       
Sbjct: 191 QQDLAQYDV-------RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTET------- 236

Query: 425 FPDEMCMVGT--AGPVSVYSELRLEEVPEMGY-----SPLDDPPC---GEVCV----RGK 470
                 M+G      V   S  R    P  GY                GE+ +    R  
Sbjct: 237 ----TAMIGNSPGQKVKPGSMGR----PLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPI 288

Query: 471 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 519
            L  GY  +P+ T  +   G++ TGD      +G +  + R  ++ K S
Sbjct: 289 GLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSS 337

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.7 bits (117), Expect = 8e-06
 Identities = 51/204 (25%), Positives = 74/204 (36%), Gaps = 22/204 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   LRA G   G  V I   N P++ E   A     L   P       
Sbjct: 13  TYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTP------- 65

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +N+ L  AEI ++ V D   K L+ S           +            + V   + 
Sbjct: 66  --INWHLTAAEIAYI-VDDSGAKVLIVSAALADT--AAELAAELPAGVPL-LLVVAGPVP 119

Query: 197 PY-SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV--LTHETIATFVSGVD 253
            + S++E L       +            ++Y+SGT+G PKG+   L          G+ 
Sbjct: 120 GFRSYEEALAAQPDTPIADETAG----ADMLYSSGTTGRPKGIKRPLPGLDPDE-APGMM 174

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
           L L  F      D VYLS  PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 69/324 (21%), Positives = 115/324 (35%), Gaps = 72/324 (22%)

Query: 214  ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
             +   P N+  ++YTSG++G PKG    H  +   V+ +    + ++  ++  DV L F 
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGAL---VNRLCATQEAYQ--LSAADVVLQFT 1766

Query: 274  PLAHILDRVIEEYFFR--RGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
              A   D  + E F+    GA +       H D   L   +   + T L  VP + +++ 
Sbjct: 1767 SFA--FDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824

Query: 328  EGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVIS 387
            + + + +E    LRR +                EA  +    A R    RL         
Sbjct: 1825 Q-MDEQVEHPLSLRRVVCGG-------------EALEVE---ALRPWLERLPDT------ 1861

Query: 388  GGAPLSTEVEEFLRVTCCAFLVQGYGLTETC-----GPTTVCFPDEMCMVGTAGPVSVYS 442
                                L   YG TET              +    V    P++  S
Sbjct: 1862 -------------------GLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLS 1902

Query: 443  ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF--------HT 494
               L+       +P+     GE+ + G  L  GY   P LT E  +   F         T
Sbjct: 1903 TYILDA----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRT 1958

Query: 495  GDIGQILPNGVVKIIDRKKNLIKI 518
            GD+ +   +GV++ + R  + +KI
Sbjct: 1959 GDLARYRADGVIEYLGRIDHQVKI 1982

Length = 3956

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 80/311 (25%), Positives = 125/311 (40%), Gaps = 55/311 (17%)

Query: 218  QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
             P +   ++YTSG++G PKGVV++H  IA     V   +++F   M  DD  L F     
Sbjct: 2331 LPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAV---IERFG--MRADDCELHF----- 2380

Query: 278  ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                               Y  + +A  + L  L P LL G   V     +G   A E  
Sbjct: 2381 -------------------YSINFDAASERL--LVP-LLCGARVVLRA--QGQWGAEEIC 2416

Query: 338  RPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-V 396
            + +R +    L       G+     S LA  LA +    +L  R  + I+GG  L+ E +
Sbjct: 2417 QLIREQQVSIL-------GFTPSYGSQLAQWLAGQ--GEQLPVR--MCITGGEALTGEHL 2465

Query: 397  EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYS 455
            +   +          YG TET      C   E    G A  P+      R+  + +   +
Sbjct: 2466 QRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLA 2525

Query: 456  PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------DG--WFHTGDIGQILPNGVVK 507
             +     GE+ V G  L  GY+  P LT E  +      DG   + TGD+ ++  +G+V+
Sbjct: 2526 LVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVE 2585

Query: 508  IIDRKKNLIKI 518
             + R  + +KI
Sbjct: 2586 YVGRIDHQVKI 2596

Length = 4334

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 48/158 (30%), Positives = 64/158 (40%), Gaps = 23/158 (14%)

Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--------EMCMVG 433
           LRLV  GG+        F+  T      Q YGL+ET G T +C P         E   VG
Sbjct: 288 LRLVGYGGSRAIAADVRFIEATGVR-TAQVYGLSET-GCTALCLPTDDGSIVKIEAGAVG 345

Query: 434 TAGP-VSVYSELRLEEVPEMGYSPL-----DDPPCGEVCVRGKTLFSGYYKNPDLTRESI 487
              P V VY           G  P           G + ++      GY+ NP+ T E +
Sbjct: 346 RPYPGVDVYLA------ATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL 399

Query: 488 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 525
           IDGW +TGD+ +   +G   I  R   +I I  G  +A
Sbjct: 400 IDGWVNTGDLLERREDGFFYIKGRSSEMI-ICGGVNIA 436

Length = 540

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 25/191 (13%)

Query: 381 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--CGPTTVCFPDEMCMVGTA-- 435
            LR + S GA  S EV +  L +     LV   G +ET   G +            T   
Sbjct: 136 SLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGA---SATGKF 192

Query: 436 --GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG- 490
             GP +V  +    EVP            G +   G+    GYYK+P+ T ++   IDG 
Sbjct: 193 ELGPDTVVLDEDGSEVPP------GSGEVGWIARGGRVPL-GYYKDPEKTAKTFREIDGV 245

Query: 491 -WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--- 546
            +   GD  ++  +G + ++ R    I  + GE V  E +E      P + D  V G   
Sbjct: 246 RYAVPGDFARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVADALVVGVPD 304

Query: 547 DSLKSMLVAVV 557
           +     +VAVV
Sbjct: 305 ERWGQRVVAVV 315

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+++   +  + LRA G  PG RV +   + P+ V A  AC     + V L   L P
Sbjct: 12  TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71

Query: 138 GAVNFILDHAE 148
             +  ILD + 
Sbjct: 72  QDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 46.1 bits (110), Expect = 5e-05
 Identities = 102/497 (20%), Positives = 155/497 (31%), Gaps = 152/497 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E+   +   L A G   G  V +   N   +V A+ A   +    + L      
Sbjct: 76  TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  +     +    V D +  +LLS       RLR                       
Sbjct: 136 PQLAEVAAREGVK-ALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS--------- 185

Query: 198 YSWDEFLHLGKVNEMEILP--PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            + +    L   +    LP  P+P  I  ++ TSGT+G PKG      +           
Sbjct: 186 -TDETLDDLIAGSSTAPLPKPPKPGGI--VILTSGTTGTPKGAPRPEPS----------- 231

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASV----------GYYHGDLN-AL 304
                             PLA +L RV     FR G +           G+ H  L  AL
Sbjct: 232 ---------------PLAPLAGLLSRVP----FRAGETTLLPAPMFHATGWAHLTLAMAL 272

Query: 305 R---------------DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALK 349
                           +D+ + K T L  VP +                    RI D   
Sbjct: 273 GSTVVLRRRFDPEATLEDIAKHKATALVVVPVML------------------SRILDLGP 314

Query: 350 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-----EEFLRVTC 404
                      E     D              L+++   G+ LS E+     E F  V  
Sbjct: 315 -----------EVLAKYDT-----------SSLKIIFVSGSALSPELATRALEAFGPVLY 352

Query: 405 CAFLVQGYGLTETCGPTTVCFPDEMCMV-GTAGPVSVYSELRLEEVPEMGYSPLDD---- 459
                  YG TE     T+  P+++    GT G       +++          LD+    
Sbjct: 353 -----NLYGSTE-VAFATIATPEDLAEAPGTVGRPPKGVTVKI----------LDENGNE 396

Query: 460 -PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI 516
            P    G + V     F GY    D   + IIDG   +GD+G    +G++ +  R  ++I
Sbjct: 397 VPRGVVGRIFVGNGFPFEGYTDGRD---KQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMI 453

Query: 517 KISQGEYVALEYLENVY 533
            +S G        ENV+
Sbjct: 454 -VSGG--------ENVF 461

Length = 549

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 120/549 (21%), Positives = 185/549 (33%), Gaps = 134/549 (24%)

Query: 19  PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKT 78
           P   P +   L    +P     LN A ++    V    GNR          +     W T
Sbjct: 14  PEQWPEFTFDLPQFQYPER---LNCAAELLDRHVHNGRGNR-------PCFRTFEETW-T 62

Query: 79  YKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           Y+++ +   +I   L    G  PG RV +  AN P  V    A      I V     L  
Sbjct: 63  YQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLRA 122

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  I+D A I                           +C   LTA             
Sbjct: 123 KELTTIVDKARITHA------------------------LCDKRLTAAD----------- 147

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                  ++  I +TSGT+G PKG +  H  I   ++  D F  
Sbjct: 148 -----------------------DVALIGFTSGTTGLPKGTMHFHRDI---LAICDAF-P 180

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY--YHGDLNALRDDLMELKPTL 315
           +   + T DDV++   PLA         + F  G  V +    G    L   L +  P L
Sbjct: 181 RHVLQPTPDDVFIGSPPLA---------FTFGLGGLVLFPLRFGASAVL---LEQATPPL 228

Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVK 375
           L                 L+ ++  R  I      A+  M                 KVK
Sbjct: 229 L-----------------LKAIQEHRATILFTAPTAYRAM---------------LIKVK 256

Query: 376 ARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 434
           A     LR  +S G  L  +V +++   T    ++ G G TE      +   +E    G 
Sbjct: 257 AFDISSLRKCVSAGETLPAKVWQDWYERTGLK-IIDGIGATEML-HIFISANEENAKPGA 314

Query: 435 AG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH 493
            G PV  Y    +++      + +     G + VRG T     Y + +  +E + DGW  
Sbjct: 315 TGKPVPGYEARIVDD----QGNEVPRGEAGRLAVRGPT--GCRYLDDERQQEYVRDGWNV 368

Query: 494 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKS 551
           TGDI +   +G    + R  ++I +S G  +A   +E+     P + +  V G  D  + 
Sbjct: 369 TGDIFRQDEDGYFHYVARSDDMI-VSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERG 427

Query: 552 MLV-AVVVP 559
            +V A +V 
Sbjct: 428 QIVCAHIVL 436

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 45.3 bits (108), Expect = 8e-05
 Identities = 58/211 (27%), Positives = 78/211 (36%), Gaps = 24/211 (11%)

Query: 362 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--C 418
           A PL D  A           L  + SGGA  S  V E  L +     L    G +ET   
Sbjct: 280 ARPLLD--ALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFG 337

Query: 419 GPTTVCF--PDEMCMVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 475
           G  TV            T GP   V  E      P            G +  RG  +  G
Sbjct: 338 GSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEP-------GSGEIGWIARRGH-IPLG 389

Query: 476 YYKNPDLTRES--IIDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 531
           YYK+P+ T E+   IDG  +   GD  ++  +G + ++ R    I  + GE V  E +E 
Sbjct: 390 YYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEE 448

Query: 532 VYCVAPIIEDIWVYG---DSLKSMLVAVVVP 559
                P + D  V G   +     +VAVV  
Sbjct: 449 ALKAHPDVADALVVGVPDERWGQEVVAVVQL 479

Length = 533

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
             +P +  TI+++SG+ G+PKGV+L+H  I + +  +          +  DDV LS LP 
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSSLPF 832

Query: 276 AH 277
            H
Sbjct: 833 FH 834

Length = 1146

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
           W + L   +  E       P ++  +++TSGTSGDPK V  TH  +A   +GV L   +F
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGVML-AQRF 188

Query: 260 EDKMTVDDV-YLSFLPLAH 277
              +  DDV Y+S +PL H
Sbjct: 189 G--LGPDDVCYVS-MPLFH 204

Length = 529

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 27/191 (14%)

Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 441
           LR+ I   AP   EV+  +       + + Y  +E  G T +   D +   G+ G  +V 
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGK-AVL 322

Query: 442 SELRL-----EEVP--EMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GW 491
            E+R+      E+P  E+G  Y  +D  P           F  Y+ +P+ T  +    GW
Sbjct: 323 GEVRILDEDGNELPPGEIGTVYFEMDGYP-----------FE-YHNDPEKTAAARNPHGW 370

Query: 492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DS 548
              GD+G +  +G + + DRK ++I IS G  +  + +EN+    P + D+ V+G   + 
Sbjct: 371 VTVGDVGYLDEDGYLYLTDRKSDMI-ISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEE 429

Query: 549 LKSMLVAVVVP 559
           +   + AVV P
Sbjct: 430 MGERVKAVVQP 440

Length = 502

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 45.2 bits (108), Expect = 1e-04
 Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 39/187 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V  + +ALRA G  PG RV  Y  N P+ V AM A  +L  I   C P +  
Sbjct: 116 SWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILDH-AEI--------DFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G   V   LD   +I        D      K      KV EL +  P   S + + V+V
Sbjct: 174 -GVQGV---LDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP---SLEHV-VVV 225

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFN--ICTIMYTSGTSGDP 235
            +          A         W++FL   +  E+E   P PF+  +  I+Y+SGT+G P
Sbjct: 226 PYL-----GPAAAAAALPGALLWEDFLAPAEAAELEFE-PVPFDHPLW-ILYSSGTTGLP 278

Query: 236 KGVVLTH 242
           K +V  H
Sbjct: 279 KCIVHGH 285

Length = 655

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 463 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 522
           G V V+    F GY     L RE   DGW    D+G     G + I+ R+KN+I +  G 
Sbjct: 334 GTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI-LFGGI 392

Query: 523 YVALEYLENVYCVAPIIEDIWVYG 546
            +  E +E+V    P +++I V G
Sbjct: 393 NIFPEEIESVLHEHPAVDEIVVIG 416

Length = 487

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           I++TSGT+G PKGV LTH+ +      +         K+T  D  L+ +PL HI
Sbjct: 7   ILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHI 55

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
            +  QP +   I++TSG+ G PKGVV +H+++   V  +    D      T +D ++S L
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-----FTPNDRFMSAL 413

Query: 274 PLAH 277
           PL H
Sbjct: 414 PLFH 417

Length = 718

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 30/208 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++    R+ G + G  V I+  N  +++E   A     L    +   L P
Sbjct: 26  TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85

Query: 138 GAVNFILDH--AEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
               +I+D   A           V   L   C    R R+++                G 
Sbjct: 86  AEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVL---------DGDGELEGF 135

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN---ICTIM-YTSGTSGDPKGVV--LTHETIATFV 249
             Y+            +  LP  P     + T M Y+SGT+G PKG+   L  +   T +
Sbjct: 136 VGYA----------EAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                    +      D VYLS  PL H
Sbjct: 186 PLTAFLQRLW--GFRSDMVYLSPAPLYH 211

Length = 511

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 42.9 bits (102), Expect = 4e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ E   Q+ + LRA G  PG RVG+        V A+ A        VPL  +   
Sbjct: 14  SYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSYPA 73

Query: 138 GAVNFILDHAE 148
             + ++L+ AE
Sbjct: 74  ERLQYMLEDAE 84

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 382 LRLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCF-----PDEMCMVG 433
           L+L+  GGA LS  +    R+     C  L Q +G+ E      V +      DE     
Sbjct: 302 LKLLQVGGARLSETLAR--RIPAELGCQ-LQQVFGMAEG----LVNYTRLDDSDERIFTT 354

Query: 434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 492
              P+S   E+    V +   +PL     G +  RG   F GYYK+P     +   +G++
Sbjct: 355 QGRPMSPDDEVW---VADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 411

Query: 493 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 531
            +GD+  I P+G + ++ R+K+ I    GE +A E +EN
Sbjct: 412 CSGDLVSIDPDGYITVVGREKDQIN-RGGEKIAAEEIEN 449

Length = 536

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 31/179 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++++ EV    SALRA G   G RV IY     + V AM AC  +  I   ++     
Sbjct: 85  TYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFAS 144

Query: 138 GAVNFILDHAEIDFVFVQDK-----KV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            ++   +D A    +   D      KV   K LL      AQ     V           +
Sbjct: 145 HSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHV-----------L 193

Query: 190 AVQTGIKP----------YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
            V  G+ P          Y+     H      +E L  +      I+YTSGT+G PKGV
Sbjct: 194 LVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWL--ESNEPSYILYTSGTTGKPKGV 250

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 43/158 (27%), Positives = 56/158 (35%), Gaps = 60/158 (37%)

Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQG------YGLTETCGPTTVCFPDEM------ 429
           LR VIS GAP+   V E  R    A L         YG TE   P +     E+      
Sbjct: 290 LRRVISAGAPVPIAVIERFR----AMLPPDAEILTPYGATE-ALPISSIESREILFATRA 344

Query: 430 --------CMVG-------------TAGPVSVYSE-LRLE--EVPEMGYSPLDDPPCGEV 465
                   C VG             +  P+  + + LRL   E+             GE+
Sbjct: 345 ATDNGAGIC-VGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI-------------GEI 390

Query: 466 CVRGKTLFSGYYKNPDLTRES-IIDG----WFHTGDIG 498
            V G  +   YY  P+ TR + I DG    W   GD+G
Sbjct: 391 VVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLG 428

Length = 552

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 47/209 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
              V  T++++   + Q+ +     G   G  V + G N P+ + A  A        +PL
Sbjct: 25  NDEVL-TWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L    +  +L    +DF  V        L  +            F++LT+       
Sbjct: 84  NPQLPQPLLEELLPSLTLDFALV--------LEGENT----------FSALTS------- 118

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS- 250
                       LHL  V     +  QP  + T+  TSG++G PK  V T +  A   S 
Sbjct: 119 ------------LHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ--AHLASA 164

Query: 251 -GVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            GV L L  F    T  D +L  LPL H+
Sbjct: 165 EGV-LSLMPF----TAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +++ E+ +   +    L A G  PG  V +   N   + EA  A   L    VP      
Sbjct: 12  RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP------ 65

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQ-KEMAVQTG 194
              VN+     EI ++  +D   + L++  D        +    T L+     E+A    
Sbjct: 66  ---VNWHFKPEEIAYIL-EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYR 121

Query: 195 IKPYS---------WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           I P           W+ +L   +  +   +P QP ++   +YTSGT+G PKGV
Sbjct: 122 ISPALLTPPAGAIDWEGWLAQQEPYDGPPVP-QPQSM---IYTSGTTGHPKGV 170

Length = 509

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 11/183 (6%)

Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 441
           L + I   AP   +V+E +       + + Y  TE  G T     + +   GT G   ++
Sbjct: 277 LEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRA-MF 335

Query: 442 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--GWFHTGDIGQ 499
            +L + +  +    P  +P  G +   G   F  Y  +P  T E+      W   GDIG 
Sbjct: 336 GDLHILD-DDGAELPPGEP--GTIWFEGGRPFE-YLNDPAKTAEARHPDGTWSTVGDIGY 391

Query: 500 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAV 556
           +  +G + + DR   +I IS G  +  +  EN+    P + D  V+G   + L   + AV
Sbjct: 392 VDEDGYLYLTDRAAFMI-ISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAV 450

Query: 557 VVP 559
           V P
Sbjct: 451 VQP 453

Length = 511

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 46/172 (26%)

Query: 382 LRLVISGGAPLS-TEVEEF--------LRVTCCAFLVQGYGLTET--------CG-PTTV 423
           LR  ++G  P+   +VE+         LR      ++  YG+ E         CG    V
Sbjct: 278 LRFALNGAEPIDPADVEDLLDAGARFGLRPEA---ILPAYGMAEATLAVSFSPCGAGLVV 334

Query: 424 CF--PDEMCMVGTAGPVSV------------YSELRLEEVPEMGYSPLDDPPCGEVCVRG 469
                D +  +  A P +                L +  V E G   L     G + +RG
Sbjct: 335 DEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDG-QVLPPRGVGVIELRG 393

Query: 470 KTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLI 516
           +++  GY     LT +  I     DGW  TGD+G +   G V +  R K++I
Sbjct: 394 ESVTPGY-----LTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVI 440

Length = 545

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 24/177 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           T+ E+  +V  + +ALRA G  PG RV  Y  N PQ V AM A  ++  I   C P +  
Sbjct: 116 TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILD---HAEIDFVFVQD--------KKVKELLSPDCRSAQRLRVMVCFTSLT 183
                   +LD     E   +F  D           ++ ++   +    LR +V    L 
Sbjct: 174 ----GARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLG 229

Query: 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF-NICTIMYTSGTSGDPKGVV 239
             + E     G      ++F    +  E+      PF +   I+++SGT+G PK +V
Sbjct: 230 PRETEAPKIDG--ALDLEDFTAAAQAAELV-FEQLPFDHPLWILFSSGTTGLPKCIV 283

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 42.2 bits (100), Expect = 7e-04
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 27/185 (14%)

Query: 381 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 439
            LR +I  G  L  ++ +EF        +V+ YG TE      +   +     G  G + 
Sbjct: 197 PLRKII--GNGLRPDIWDEFKERFGVPRIVEFYGSTE-GNVGFINLFN---KPGAVGRLP 250

Query: 440 VYSELRLEEVPEMGYSPLDDPP--C--------GEVCVRGKTL--FSGYYKNPDLTRESI 487
             + + + +       P+ D    C        G +         F GY  +    ++ +
Sbjct: 251 -PAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEATEKKIL 309

Query: 488 I------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 541
                  D +F+TGD+ +    G    +DR  +  +  +GE V+   +E V    P +E+
Sbjct: 310 RDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRW-KGENVSTTEVEEVLAKHPGVEE 368

Query: 542 IWVYG 546
             VYG
Sbjct: 369 ANVYG 373

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 41/174 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E+V+ + + LR  G +PG  V +     P+ V        L+L    L+  +  
Sbjct: 485 SYREMREQVVALANLLRERGVKPGDSVAV---ALPRSVF-------LTLA---LHAIVEA 531

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM------VCFTSLTAEQKEMAV 191
           GA    LD                   PD     RL++M          +   +    A 
Sbjct: 532 GAAWLPLDTGY----------------PD----DRLKMMLEDARPSLLITTADQLPRFAD 571

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
              +    ++  L       +     QP +   I++TSG++G PKGV++    I
Sbjct: 572 VPDLTSLCYNAPLAPQGAAPL--QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAI 623

Length = 1296

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E+Y EV +  + L++ G + G RV IY    P+   AM AC
Sbjct: 80  TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 16/172 (9%)

Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 441
           LR VI   AP   +V+  +       + + Y  TE  G T +  PD +   G+ G  SV 
Sbjct: 272 LRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGR-SVL 330

Query: 442 SELRLEEVPEMGYSPLDDPPCGEVCV----RGKTLFSGYYKNPDLTRESIIDG---WFHT 494
            +L + +         ++ P G +      R +  F  Y  +P+ T  +       W   
Sbjct: 331 GDLHICD------DDGNELPAGRIGTVYFERDRLPFR-YLNDPEKTAAAQHPAHPFWTTV 383

Query: 495 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
           GD+G +  +G + + DRK  +I IS G  +  +  EN   + P + D+ V G
Sbjct: 384 GDLGSVDEDGYLYLADRKSFMI-ISGGVNIYPQETENALTMHPAVHDVAVIG 434

Length = 501

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E+ EE  +  + L+  G   G RV +     P+    +  C  L  + +P    LG
Sbjct: 1   WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           P  + + L+ A    +                       ++ FTS T    +M + T
Sbjct: 61  PKDIRYRLERAGARAIVTSADDP---------------ALLYFTSGTTGLPKMVLHT 102

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ +   ++ +ALR  G E G RVG+Y    P+   A  A   L  + VPL    GP
Sbjct: 8   TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 138 GAVNFILDHAE 148
            AV   L  + 
Sbjct: 68  DAVEHRLRDSG 78

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 39/209 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++      I +AL+A  A  G R  +   + P +V A   C    +I VP Y    P
Sbjct: 42  SYRDLDLRARTIAAALQAR-ASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP---P 97

Query: 138 GAVN--------FILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            +           I+  AE   +         LL  +  +A     ++C  +L     E 
Sbjct: 98  ESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAE- 156

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPP-QPFNICTIMYTSGTSGDPKGVVLTHETIATF 248
                    +W E             P  QP +I  + YTSG++  PKGV ++H      
Sbjct: 157 ---------AWQE-------------PALQPDDIAFLQYTSGSTALPKGVQVSH---GNL 191

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
           V+   L    F   +  DDV +S+LPL H
Sbjct: 192 VANEQLIRHGFGIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHE--TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               +YTSGT+G PK  +++H     A  V G    L         DDV    LPL H
Sbjct: 83  PAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKP-------DDVLYLCLPLYH 133

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 14/102 (13%)

Query: 456 PLDDPPCGEVCVR----GKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG 504
           P+ +P  GE+  R     + LF GY KN D T   ++       D W+ TGD+ +   +G
Sbjct: 295 PVGEP--GEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADG 352

Query: 505 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
               +DR  +  +  + E V+   + +V    P + +  VYG
Sbjct: 353 RWYFLDRLGDTFRW-KSENVSTGEVADVLGAIPSVAEANVYG 393

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 45/199 (22%)

Query: 93  LRASGA------EPGCRVGIYGANCPQWVE-------AMEACNALSLICVPLYDTLGPGA 139
            RA GA      +PG RV I     PQ ++       A+ A      I VPL+D   PG 
Sbjct: 65  NRAVGARLQQVTKPGDRVAIL---APQNLDYLIAFFGALYAGR----IAVPLFDPAEPGH 117

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199
           V  +  HA +D     D     +L+    SA+ +R    F +  A+++   +     P  
Sbjct: 118 VGRL--HAVLD-----DCTPSAILTTT-DSAEGVRKF--FRARPAKERPRVIAVDAVPDE 167

Query: 200 WDEFLHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
                    V    + P      I  + YTSG++  P GV +TH  + T V  V   L+ 
Sbjct: 168 ---------VGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG 218

Query: 259 FEDKMTVDDVYLSFLPLAH 277
            E    V     S+LP  H
Sbjct: 219 QEGDRGV-----SWLPFFH 232

Length = 631

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY E+ E   ++ + L A G   G  V +YG   P    A+ AC
Sbjct: 18  TYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILAC 61

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++   V  +   L  SG  PG RV +   +  ++V A+ A +   L+ VPL D   P
Sbjct: 45  SYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPALP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +   A    V + D        P  R+    R      ++  +         +  
Sbjct: 104 IAEQRVRSQAAGARVVLIDA-----DGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSV-- 156

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI----CTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                  HL    E       P  +      IM+T GT+G PK V  TH  IA+ V  +
Sbjct: 157 -------HLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAI 208

Length = 534

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            Y E+     ++  AL   G  P   VG+      + V A+ A        VPL D   P
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPL-DPEYP 596

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE     ++D  V+ LLS           +     L A  + + +    +P
Sbjct: 597 ---------AERLAYMLEDSGVQLLLSQ--------SHLGRKLPLAAGVQVLDLD---RP 636

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            +W E    G   E       P N+  ++YTSG++G PKG    H  ++  +
Sbjct: 637 AAWLE----GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRL 684

Length = 5163

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 40.1 bits (95), Expect = 0.004
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E++ EV +  +AL++ G + G RV IY    P+   AM AC
Sbjct: 100 TYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143

Length = 637

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 20/179 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL---ICVPLYDT 134
           T  E+  +V ++ +AL A G E G  + I   + P  V A+    A+ L   + V + D+
Sbjct: 210 TLSELRSQVSRVANALDALGFEKGDAIAI---DMPMNVHAVIIYLAIILAGCVVVSIADS 266

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKV---KEL-LSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             P  +   L  ++   +F QD  V   K + L      A+  + +V    L A+ K + 
Sbjct: 267 FAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIV----LPADGKSVR 322

Query: 191 VQTGIKPYSWDEFL----HLGKVNEMEILPPQPFNICT-IMYTSGTSGDPKGVVLTHET 244
           V+      SWD+FL     L + +E + +  QP    T I+++SGT+G+PK +  T  T
Sbjct: 323 VKLREGDMSWDDFLARANGLRRPDEYKAVE-QPVEAFTNILFSSGTTGEPKAIPWTQLT 380

Length = 728

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	657
PLN02614	666	long-chain acyl-CoA synthetase	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.97
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.95
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.93
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.92
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.84
PRK09188	365	serine/threonine protein kinase; Provisional	99.74
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.72
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.94
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.68
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.4
PLN02249	597	indole-3-acetic acid-amido synthetase	97.87
PLN02247	606	indole-3-acetic acid-amido synthetase	97.71
PLN02620	612	indole-3-acetic acid-amido synthetase	97.51
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	96.43
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	92.68
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	81.23

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=3e-86  Score=744.89  Aligned_cols=651  Identities=51%  Similarity=0.925  Sum_probs=533.5

Q ss_pred             ceecccccCCCCCCCCCCCCCCceeccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHH
Q 006197            2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKE   81 (657)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~e   81 (657)
                      |-|--|+++||.|.++.|.++++||+.....+++...+...++.++|+++++++||++|+.+....++..+.++++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~e   84 (666)
T PLN02614          5 KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQE   84 (666)
T ss_pred             ceeEEEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHH
Confidence            45777999999999999999999999987777775556778999999999999999999986410022234567899999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhh
Q 006197           82 VYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE  161 (657)
Q Consensus        82 l~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~  161 (657)
                      |.++++++|++|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|++.+....
T Consensus        85 l~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~  164 (666)
T PLN02614         85 VYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISE  164 (666)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876555


Q ss_pred             hhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeec
Q 006197          162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT  241 (657)
Q Consensus       162 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t  241 (657)
                      +..........++.++.++.............+....++++++..............++|+++|+|||||||.||||++|
T Consensus       165 ~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lt  244 (666)
T PLN02614        165 LFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS  244 (666)
T ss_pred             HHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEe
Confidence            43322221223556666654321111111112233457777765442222222334679999999999999999999999


Q ss_pred             hHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecCChHHHHHHHhhhcCeEEEechH
Q 006197          242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR  321 (657)
Q Consensus       242 h~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~  321 (657)
                      |+++...+......+......+.++|++++.+|++|.++......++..|+++++.+.++..+++.+++++||+++++|+
T Consensus       245 h~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~  324 (666)
T PLN02614        245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPR  324 (666)
T ss_pred             cHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHH
Confidence            99999887665443211112467899999999999999987666678899999988778999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHH---HHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHH
Q 006197          322 VFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE  398 (657)
Q Consensus       322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~  398 (657)
                      +++.+.+.+.........+.+.++++.   +......+.......+.++.+.++++++.++++||.+++||+++++.+. 
T Consensus       325 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~-  403 (666)
T PLN02614        325 VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVE-  403 (666)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHH-
Confidence            999998877665555555555555432   1122222222344567788888899999888999999999999998764 


Q ss_pred             HHHHhc-CCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccC
Q 006197          399 FLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  477 (657)
Q Consensus       399 ~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~  477 (657)
                      .+.+.+ +++++++||+||+++..+..........+++|+|+|+++++|++++++...+++.|+.|||+|+||+++.|||
T Consensus       404 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~  483 (666)
T PLN02614        404 SFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYY  483 (666)
T ss_pred             HHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCccccccc
Confidence            455555 5899999999999876554443333345899999999999999855544455667889999999999999999


Q ss_pred             CCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEE
Q 006197          478 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV  557 (657)
Q Consensus       478 ~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~~~~~a~v  557 (657)
                      ++++.|.+.|.||||+|||+|++|+||+|+|+||.+|+||+++|++|+|.+||++|.+||.|.+|+|+|...+..++|+|
T Consensus       484 ~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alv  563 (666)
T PLN02614        484 KREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIA  563 (666)
T ss_pred             CCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEE
Confidence            99999999999999999999999999999999999999997789999999999999999999999999988777999999


Q ss_pred             ecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHH
Q 006197          558 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL  637 (657)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l  637 (657)
                      +++.+....|...++...+..+++..+++.+.+.+++.+...++.|+.|.+++.|++++++|+++...+||++|++|..+
T Consensus       564 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i  643 (666)
T PLN02614        564 NPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQL  643 (666)
T ss_pred             eCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHH
Confidence            99999999999888775678888889999999999998887777899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhC
Q 006197          638 LIYYQVEIDQLYEKLA  653 (657)
Q Consensus       638 ~~~~~~~i~~ly~~~~  653 (657)
                      .+.|++.||+||.+..
T Consensus       644 ~~~y~~~i~~ly~~~~  659 (666)
T PLN02614        644 LKYYQSVIDEMYKTTN  659 (666)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999999653

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=5.6e-86  Score=691.27  Aligned_cols=645  Identities=46%  Similarity=0.748  Sum_probs=579.5

Q ss_pred             ecccccCCCCCCCC-CCCCC---CceeccccC--CCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEe
Q 006197            4 FAAQVEEGKEGKDG-KPSVG---PVYRNLLAS--NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWK   77 (657)
Q Consensus         4 ~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~   77 (657)
                      +..+.+.++.+-+. +|..+   ++||+...+  .+++-.+....|+++.|.+.+..+|+.+++..+.-.+ ..++|+.+
T Consensus        31 ~~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~  109 (691)
T KOG1256|consen   31 FITRPKSLKPGVDLSNQSVGVEDGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWL  109 (691)
T ss_pred             ceeeccccCCCCCccccccccCCCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEE
Confidence            45566777776664 66666   899998884  5566677889999999999999999999998883323 56789999


Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEc-c
Q 006197           78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ-D  156 (657)
Q Consensus        78 Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~-~  156 (657)
                      ||.|+.+++..++..|+++|+++++.|+|++-|++||+++.+||...|.+.||+..+++++.+.++++.+.+.++|++ +
T Consensus       110 tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~  189 (691)
T KOG1256|consen  110 TYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNA  189 (691)
T ss_pred             EHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 6


Q ss_pred             hhhhhhhccccc-cccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccC-CCCCCCceEEEEecCCCCCC
Q 006197          157 KKVKELLSPDCR-SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-LPPQPFNICTIMYTSGTSGD  234 (657)
Q Consensus       157 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~~TSGTTG~  234 (657)
                      .....+++.... ..+.++.++.++....+........+..+.+|+++++.+....... .++.++|.|.|.|||||||.
T Consensus       190 ~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~  269 (691)
T KOG1256|consen  190 KKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGN  269 (691)
T ss_pred             HHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCC
Confidence            677777776665 3678999999999998888888888999999999999997655555 47899999999999999999


Q ss_pred             CceeeechHhHHHhhhhhhhhcccccC-CCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecCChHHHHHHHhhhcC
Q 006197          235 PKGVVLTHETIATFVSGVDLFLDQFED-KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP  313 (657)
Q Consensus       235 pK~v~~th~~l~~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~  313 (657)
                      ||||++||+|+.+.+............ ....+|++++++||.|++........++.|+++.++.+|+..+.+.++..+|
T Consensus       270 PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkP  349 (691)
T KOG1256|consen  270 PKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKP  349 (691)
T ss_pred             CceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCC
Confidence            999999999999976643333222111 2334799999999999999999888889999999999999999999999999


Q ss_pred             eEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH----hhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcC
Q 006197          314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAW----MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  389 (657)
Q Consensus       314 t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G  389 (657)
                      |++.++|.+++++.+.+++...+..++.++++++++.-+    +..|-... ..+++|++.+.++++.+|+++|.+++|+
T Consensus       350 T~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGa  428 (691)
T KOG1256|consen  350 TVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGA  428 (691)
T ss_pred             cEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecC
Confidence            999999999999999999999999999999999964322    23443222 7899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc
Q 006197          390 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  469 (657)
Q Consensus       390 ~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g  469 (657)
                      +|+++++...++..+|++|+++||+||+++.++....++. ..+++|.|+|+++++++|+++-+....+  ..|||||+|
T Consensus       429 APls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~--~~GEIcirG  505 (691)
T KOG1256|consen  429 APLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADG--SKGEICVRG  505 (691)
T ss_pred             CCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCC--CcceEEEec
Confidence            9999999999999999999999999999977777777666 5699999999999999998877755554  379999999


Q ss_pred             CCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecC
Q 006197          470 KTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS  548 (657)
Q Consensus       470 ~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~  548 (657)
                      +++|.||+.+|+.|.+.+ .|||++|||+|+++++|.|+|.||.++++|+++|++|.|..||++..+.+.|.+.+|.|..
T Consensus       506 ~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s  585 (691)
T KOG1256|consen  506 PNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDS  585 (691)
T ss_pred             chhceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCc
Confidence            999999999999999999 9999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCcccc
Q 006197          549 LKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA  628 (657)
Q Consensus       549 ~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~  628 (657)
                      .+..++|+|+++++..+.|+..+....+..++|...++.+.+.+++.+..+++.+..+...+.|++.+++|+++...+||
T Consensus       586 ~~~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltP  665 (691)
T KOG1256|consen  586 LRSFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTP  665 (691)
T ss_pred             chhcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccch
Confidence            88999999999999999999977778999999999999999999999999889999999999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHHHHHHhhhC
Q 006197          629 TLKKKRNKLLIYYQVEIDQLYEKLA  653 (657)
Q Consensus       629 ~GKv~r~~l~~~~~~~i~~ly~~~~  653 (657)
                      +-|++|..+.++|+++||+||++.+
T Consensus       666 TlK~KR~~l~~~yk~~Id~mY~~~~  690 (691)
T KOG1256|consen  666 TLKIKRPQLLKYYKKQIDELYKEIK  690 (691)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999754

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=4.5e-85  Score=734.61  Aligned_cols=656  Identities=79%  Similarity=1.302  Sum_probs=552.2

Q ss_pred             CceecccccCCCCCCCCCCCCCCceeccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHH
Q 006197            1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYK   80 (657)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~   80 (657)
                      ||-+...+.++++|.+++|.++++||+......++..++..+|+.++|.+.++++|+++|+.+....++..+.++.+||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~   80 (660)
T PLN02430          1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYK   80 (660)
T ss_pred             CCceeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHH
Confidence            88889888888999889999999999987666676667889999999999999999999997642112334566788999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh
Q 006197           81 EVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK  160 (657)
Q Consensus        81 el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~  160 (657)
                      |+.++++++|.+|.+.|+++||+|+|+++|++||+++++||+++|++++|+++.++.+++.++++.++++++|++.....
T Consensus        81 el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~  160 (660)
T PLN02430         81 EVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK  160 (660)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876543


Q ss_pred             hhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeee
Q 006197          161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL  240 (657)
Q Consensus       161 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~  240 (657)
                      ..........+.++.++++++............+....+|++++..+...........++|+++++|||||||.||||++
T Consensus       161 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~l  240 (660)
T PLN02430        161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL  240 (660)
T ss_pred             HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEe
Confidence            33322222234566777776543221111112233456788887655332222334468999999999999999999999


Q ss_pred             chHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecCChHHHHHHHhhhcCeEEEech
Q 006197          241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (657)
Q Consensus       241 th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p  320 (657)
                      ||+++...+......+..+...+.++|++++.+|++|.++....+.++..|++++++..++..+.+.+.+++||++.++|
T Consensus       241 th~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP  320 (660)
T PLN02430        241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (660)
T ss_pred             ecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecH
Confidence            99999988766533222222246789999999999999998877778899999998877889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHH---HHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHH
Q 006197          321 RVFEKIHEGIKKALEELRPLRRRIFDAL---KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE  397 (657)
Q Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~  397 (657)
                      .+++.+.+.+...........+.++++.   +..+...+.......++++.+.+.++++.+++++|.+++||+++++++.
T Consensus       321 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~  400 (660)
T PLN02430        321 RVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE  400 (660)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH
Confidence            9999999988777766666777777663   3334444444445567888889999999999999999999999999987


Q ss_pred             HHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccC
Q 006197          398 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  477 (657)
Q Consensus       398 ~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~  477 (657)
                      +.++...+.+++++||+||+++.++.+........+++|.|.++++++++++++.+..+.+.+..|||+|+||+++.|||
T Consensus       401 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~  480 (660)
T PLN02430        401 EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY  480 (660)
T ss_pred             HHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCcccccc
Confidence            76665545789999999999987776655444445899999999999999855555456666678999999999999999


Q ss_pred             CCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEE
Q 006197          478 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV  557 (657)
Q Consensus       478 ~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~~~~~a~v  557 (657)
                      ++++.|.+.|.||||+|||+|++|+||+|+|.||.+|+|++++|++|+|.+||+.|.+||.|.+|+|+|....+.++|+|
T Consensus       481 ~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~v  560 (660)
T PLN02430        481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVV  560 (660)
T ss_pred             CChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEE
Confidence            99999999999999999999999999999999999999998789999999999999999999999999976567999999


Q ss_pred             ecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHH
Q 006197          558 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL  637 (657)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l  637 (657)
                      +++.+....|....+...++.+++..+++.+.+.++|.+.+.++.|+.|.+++.|++++++|+++...+|+++|++|+.+
T Consensus       561 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i  640 (660)
T PLN02430        561 VPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNL  640 (660)
T ss_pred             EcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHH
Confidence            99999999999887776678888999999999999999998777899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhCCCC
Q 006197          638 LIYYQVEIDQLYEKLAPGR  656 (657)
Q Consensus       638 ~~~~~~~i~~ly~~~~~~~  656 (657)
                      .+.|++.|++||.+..++|
T Consensus       641 ~~~y~~~i~~ly~~~~~~~  659 (660)
T PLN02430        641 LKYYQVEIDEMYRKLAEKR  659 (660)
T ss_pred             HHHHHHHHHHHHHhhhhcc
Confidence            9999999999999988776

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.9e-84  Score=728.42  Aligned_cols=648  Identities=50%  Similarity=0.893  Sum_probs=533.9

Q ss_pred             ccccCCCCCCCCCCCCCCceeccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHH
Q 006197            6 AQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEE   85 (657)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~   85 (657)
                      -.+||-..|..+.|+++++||+....+.+.+.++...|+.++|.+.++++|+++|+......++..++|+++||+||.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~   86 (660)
T PLN02861          7 VKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDA   86 (660)
T ss_pred             eeeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHH
Confidence            35788888999999999999999877777777778889999999999999999999753111333456789999999999


Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhcc
Q 006197           86 VLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP  165 (657)
Q Consensus        86 v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~  165 (657)
                      ++++|++|.+.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|++.+....+...
T Consensus        87 v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~  166 (660)
T PLN02861         87 AIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSC  166 (660)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988766554332


Q ss_pred             ccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhH
Q 006197          166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI  245 (657)
Q Consensus       166 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l  245 (657)
                      .......++.++.+++............+....++.++...... ........++|+++|+|||||||.||||++||+++
T Consensus       167 ~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l  245 (660)
T PLN02861        167 LPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL-DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAI  245 (660)
T ss_pred             hhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc-cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHH
Confidence            22111245677776643321111111122334577777654422 11223456899999999999999999999999999


Q ss_pred             HHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHH
Q 006197          246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEK  325 (657)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~  325 (657)
                      +..+......+......+.++|++++.+|++|.+++...+.+++.|+++++...++..+++.|++++||+++++|.+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~  325 (660)
T PLN02861        246 IAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDR  325 (660)
T ss_pred             HHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHH
Confidence            98877654443211112578899999999999999887677899999999887789999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHH---HHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHH
Q 006197          326 IHEGIKKALEELRPLRRRIFDALK---LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV  402 (657)
Q Consensus       326 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~  402 (657)
                      |.+.+.........+.+.++++..   ..+...+.......+.++.+.++++++.+++++|.+++||+++++++.+ |.+
T Consensus       326 l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~  404 (660)
T PLN02861        326 IYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLR  404 (660)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHH
Confidence            998877777766667777776632   2223333333344677888899999999999999999999999999865 555


Q ss_pred             hcC-CceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCch
Q 006197          403 TCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD  481 (657)
Q Consensus       403 ~~~-~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~  481 (657)
                      .++ .+++++||+||+++.++..........+++|+|+++++++|+++++.+....+.++.|||+++||+++.|||++++
T Consensus       405 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe  484 (660)
T PLN02861        405 VTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQD  484 (660)
T ss_pred             HHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHH
Confidence            555 4799999999998766554433333458999999999999998544332333344679999999999999999999


Q ss_pred             hhhccccCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEEecCh
Q 006197          482 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE  561 (657)
Q Consensus       482 ~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~~~~~a~v~~~~  561 (657)
                      .|.+.|.||||+|||+|++|+||+|+|.||.+|+||+++|++|+|.+||++|.+||.|.+|+|+|.+.++.++|+|++..
T Consensus       485 ~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~  564 (660)
T PLN02861        485 LTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDR  564 (660)
T ss_pred             HHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCH
Confidence            99999999999999999999999999999999999987899999999999999999999999999886679999999999


Q ss_pred             hhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006197          562 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  641 (657)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~  641 (657)
                      +....|....+...++.+++...+....+.+++++.+.+..++.|.+++.+++++++|+++..++|+++|++|+++++.|
T Consensus       565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y  644 (660)
T PLN02861        565 QALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYY  644 (660)
T ss_pred             HHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHH
Confidence            98888888776545677888888888899999999988778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhCCC
Q 006197          642 QVEIDQLYEKLAPG  655 (657)
Q Consensus       642 ~~~i~~ly~~~~~~  655 (657)
                      +++||+||.+...+
T Consensus       645 ~~~I~~lY~~~~~~  658 (660)
T PLN02861        645 KDCIDQLYSEAKGG  658 (660)
T ss_pred             HHHHHHHHHhhhhc
Confidence            99999999976554

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1e-81  Score=710.25  Aligned_cols=628  Identities=40%  Similarity=0.664  Sum_probs=523.5

Q ss_pred             CCCCCCCCCceeccccCCCCCC---CCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHH
Q 006197           15 KDGKPSVGPVYRNLLASNGFPS---VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS   91 (657)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~   91 (657)
                      +-..++++.+||+...+.++-+   .++...++.++|+.+++++|+++|+......++..+.++.+||+||.++++++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~   93 (651)
T PLN02736         14 EKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGS   93 (651)
T ss_pred             CCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHH
Confidence            4567789999998766644422   3456679999999999999999999542100334455788999999999999999


Q ss_pred             HHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhcccccccc
Q 006197           92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ  171 (657)
Q Consensus        92 ~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~  171 (657)
                      +|++.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++.++|+.++++++|++.+..+.+..... ..+
T Consensus        94 ~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~-~~~  172 (651)
T PLN02736         94 GLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS-EIP  172 (651)
T ss_pred             HHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhh-cCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999887665544322 334


Q ss_pred             CceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhh
Q 006197          172 RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG  251 (657)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~  251 (657)
                      .++.++..+.............+....+++++...............++++++|+|||||||.||||++||+++..++..
T Consensus       173 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~  252 (651)
T PLN02736        173 SVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAG  252 (651)
T ss_pred             CceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHH
Confidence            56666666533221111111123345678887765432222233457899999999999999999999999999998887


Q ss_pred             hhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHH
Q 006197          252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK  331 (657)
Q Consensus       252 ~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~  331 (657)
                      +...+     ++.++|++++.+|++|.+++...+.++..|+++++.+.++..+++.|++++||+++++|.+++.+.+...
T Consensus       253 ~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~  327 (651)
T PLN02736        253 SSLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGIT  327 (651)
T ss_pred             HHhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHH
Confidence            76655     7889999999999999999988888899999999988889999999999999999999999999999888


Q ss_pred             HHHHhhchHHHHHHHHHHHH---HhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCce
Q 006197          332 KALEELRPLRRRIFDALKLA---WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFL  408 (657)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v  408 (657)
                      ......+.+.+.++++....   ....+   ....+.++.+.+++++..+++++|.+++||+++++++.+++.+.+|+++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~  404 (651)
T PLN02736        328 NAVKESGGLKERLFNAAYNAKKQALENG---KNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRV  404 (651)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHcC---CCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCe
Confidence            77777777777777663221   11111   2234567778888888888899999999999999999999998889999


Q ss_pred             eeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCC-CCCCCCCceEEEccCCcccccCCCchhhhccc
Q 006197          409 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  487 (657)
Q Consensus       409 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~-~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~  487 (657)
                      +++||+||+++.++...... ...+++|+|+|+++++|+|.+++... ....++.|||+++||+++.|||++++.|.+.|
T Consensus       405 ~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~  483 (651)
T PLN02736        405 LEGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVI  483 (651)
T ss_pred             EEEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhh
Confidence            99999999987766554433 34589999999999999983332111 11122479999999999999999999999998


Q ss_pred             -cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEEecChhhHHH
Q 006197          488 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKK  566 (657)
Q Consensus       488 -~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~~~~~a~v~~~~~~~~~  566 (657)
                       .||||+|||+|++|+||+++|+||.+|+||+++|++|+|.+||++|.+||.|.+|+|+|....+.++|+|+++++....
T Consensus       484 ~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~  563 (651)
T PLN02736        484 DEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKA  563 (651)
T ss_pred             ccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHH
Confidence             6999999999999999999999999999998789999999999999999999999999976567999999999998888


Q ss_pred             HHHHCCC-CccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          567 WAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       567 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                      |....+. ..++.+++..+++++.+.+.|.+.+++..|+.|++|++|.+++++|++++.++|++||++|+++++.|+++|
T Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i  643 (651)
T PLN02736        564 WAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAI  643 (651)
T ss_pred             HHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHH
Confidence            8877776 577899999999999999999999887789999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 006197          646 DQLYEKL  652 (657)
Q Consensus       646 ~~ly~~~  652 (657)
                      ++||...
T Consensus       644 ~~~y~~~  650 (651)
T PLN02736        644 SDMYAEL  650 (651)
T ss_pred             HHHHhhc
Confidence            9999754

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.4e-80  Score=616.71  Aligned_cols=634  Identities=36%  Similarity=0.634  Sum_probs=562.4

Q ss_pred             CCCCCCCCCCCCceeccccCCCCCCCC-CCcCcHHHHHHHHHHcCCCCCceeeecc--------cCC------CCCCceE
Q 006197           12 KEGKDGKPSVGPVYRNLLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPF--------VDG------KFGPYVW   76 (657)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~a~~~p~~~a~~~~~~--------~d~------~~~~~~~   76 (657)
                      |-++.+++.|+++|||.....++-+.+ +...|+.++|++.++++.++.++-.+.+        +||      .-++|..
T Consensus        10 ~~~~~~n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w   89 (678)
T KOG1180|consen   10 KAKPAANEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKW   89 (678)
T ss_pred             ccCCCCCCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceee
Confidence            345556889999999999977777666 7789999999999999999999966533        133      2456789


Q ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEc
Q 006197           77 KTYKEVYEEVLQIVSALRASGAEPGCR-VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ  155 (657)
Q Consensus        77 ~Ty~el~~~v~~lA~~L~~~G~~~gd~-V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~  155 (657)
                      +||.|+..++.++|.+|.+.|++++++ |+|+++.+.+|..+++||++.+...|.+...+..+.+.+-|++++++.+|++
T Consensus        90 ~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~  169 (678)
T KOG1180|consen   90 MSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTD  169 (678)
T ss_pred             ecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeC
Confidence            999999999999999999999998877 9999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhccccccccCceEEEEecCCcH----HHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCC
Q 006197          156 DKKVKELLSPDCRSAQRLRVMVCFTSLTA----EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGT  231 (657)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGT  231 (657)
                      .+.+..+...+ .....+++|+.+++.+.    +...........+.+++++++.++....+..++.++|+|+|+|||||
T Consensus       170 ~~LL~kl~~~l-~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGS  248 (678)
T KOG1180|consen  170 SELLPKLKAPL-KQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGS  248 (678)
T ss_pred             HHHHHHHHHHH-hccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCC
Confidence            99998654443 45689999999995332    22222234678899999999999877666777789999999999999


Q ss_pred             CCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC-C----h----H
Q 006197          232 SGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-D----L----N  302 (657)
Q Consensus       232 TG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~-~----~----~  302 (657)
                      ||.||||+++|.|+++.+.......+    .+++.|+++.++||.|++.+..-+.+++.|+.+-..+. .    .    .
T Consensus       249 TG~PKGVml~H~NiVA~~~G~~~~v~----~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~k  324 (678)
T KOG1180|consen  249 TGLPKGVMLTHSNIVAGVTGVGENVP----ELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKK  324 (678)
T ss_pred             CCCCceEEEecccHHhhhhhhcccCc----ccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhcc
Confidence            99999999999999999988766542    68999999999999999999999999999999887643 1    1    1


Q ss_pred             HHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcE
Q 006197          303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL  382 (657)
Q Consensus       303 ~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  382 (657)
                      .----+..+|||+|.++|.+++++.+.+.+.....+.+.+.+|.............+....++++.+.|.+++...|.+|
T Consensus       325 g~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~l  404 (678)
T KOG1180|consen  325 GCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNL  404 (678)
T ss_pred             CCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCce
Confidence            11123447899999999999999999999999999999999988854333333333456789999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCC
Q 006197          383 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC  462 (657)
Q Consensus       383 r~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~  462 (657)
                      |.+++||++|+++..+++.--+++|+.++||.||+++..+.....+... +.+|.|++.++++++|.++++-..-+....
T Consensus       405 R~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgGY~~~~~PPr  483 (678)
T KOG1180|consen  405 RYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGGYFAKNKPPR  483 (678)
T ss_pred             EEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcCccCCCCCCC
Confidence            9999999999999999998888999999999999999888877766665 899999999999999988888777665578


Q ss_pred             ceEEEccCCcccccCCCchhhhccc-c-CC--ccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcc
Q 006197          463 GEVCVRGKTLFSGYYKNPDLTRESI-I-DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI  538 (657)
Q Consensus       463 GEl~v~g~~~~~gy~~~~~~~~~~~-~-~g--~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~  538 (657)
                      ||||++|++++.||+++++.|.+.| . ||  ||+|||+|++.+||.|.|++|++|.+|+.+|+.|+++-+|++++..|.
T Consensus       484 GEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~  563 (678)
T KOG1180|consen  484 GEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPY  563 (678)
T ss_pred             ceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcc
Confidence            9999999999999999999999999 4 89  999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEecCCCCeEEEEEecChhhHHHHHHHCCC-CccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecC
Q 006197          539 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPR  617 (657)
Q Consensus       539 V~~~~vv~~~~~~~~~a~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~  617 (657)
                      |...+|++.+....++++|++++.....++...+. ..++.++|.+.++.+.++++|.++.++.+|..+.+|..|++.++
T Consensus       564 V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e  643 (678)
T KOG1180|consen  564 VDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPE  643 (678)
T ss_pred             hhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCC
Confidence            99999999888889999999999999999999998 55999999999999999999999999899999999999999999


Q ss_pred             CCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006197          618 PFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  651 (657)
Q Consensus       618 ~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~ly~~  651 (657)
                      |++.++.-+|..-|++|+.++..|+++||++|.+
T Consensus       644 ~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~~  677 (678)
T KOG1180|consen  644 PWTPENGLVTAALKLKRKEILAAYKKEIDRLYKE  677 (678)
T ss_pred             CcCCCccccHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999985

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.7e-78  Score=685.37  Aligned_cols=628  Identities=34%  Similarity=0.564  Sum_probs=512.4

Q ss_pred             CCCCCCCceeccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecc--------cCC------CCCCceEeeHHHH
Q 006197           17 GKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPF--------VDG------KFGPYVWKTYKEV   82 (657)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~--------~d~------~~~~~~~~Ty~el   82 (657)
                      +.+.++.+||+...........+...|+.++|++.++++||++|+..+..        .++      ..++|+.+||+|+
T Consensus        33 ~~~~~~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el  112 (696)
T PLN02387         33 VGGEPGYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQV  112 (696)
T ss_pred             CCCCCCCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHH
Confidence            33344446999986633334446778999999999999999999954310        012      1256788999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhh
Q 006197           83 YEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL  162 (657)
Q Consensus        83 ~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~  162 (657)
                      .++++++|++|.+.|+++||+|+|+++|++||+++++||+++|++++|+++.++.+++.++|+.++++++|++.+....+
T Consensus       113 ~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l  192 (696)
T PLN02387        113 FERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKL  192 (696)
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998777665


Q ss_pred             hccccccccCceEEEEecCCcHHHHHH-HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeec
Q 006197          163 LSPDCRSAQRLRVMVCFTSLTAEQKEM-AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT  241 (657)
Q Consensus       163 ~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t  241 (657)
                      .... ...+.++.++++++........ .........+|.++...+...........++|+++|+|||||||.||||++|
T Consensus       193 ~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lt  271 (696)
T PLN02387        193 IDIS-SQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMT  271 (696)
T ss_pred             HHHh-hccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEE
Confidence            4432 2335677888887643211110 0112334567888776653322233345689999999999999999999999


Q ss_pred             hHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC----C-----hHHHHHHHhhhc
Q 006197          242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----D-----LNALRDDLMELK  312 (657)
Q Consensus       242 h~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~----~-----~~~~~~~i~~~~  312 (657)
                      |+++..++......+    ..+.++|++++.+|++|++++.....++..|+++.+...    +     ...+...+++++
T Consensus       272 h~~l~~~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~  347 (696)
T PLN02387        272 HGNIVATVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALK  347 (696)
T ss_pred             cHHHHHHHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhC
Confidence            999998887754432    157889999999999999999877777778887765432    1     234566889999


Q ss_pred             CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH---HHhhcCC--CCCCcchhHHHHHHHHHHHHcCCcEEEEEE
Q 006197          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKL---AWMNMGY--KQREASPLADLLAFRKVKARLGGRLRLVIS  387 (657)
Q Consensus       313 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~  387 (657)
                      ||++.++|.+++.+.+.........+.+.+.+++....   ......+  .......+++.+.+.++++.+++++|.+++
T Consensus       348 pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~  427 (696)
T PLN02387        348 PTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLS  427 (696)
T ss_pred             CcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEE
Confidence            99999999999999988766655555566666655321   1111100  012356788999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCC-CCCCCceEE
Q 006197          388 GGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVC  466 (657)
Q Consensus       388 ~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~-~~~~~GEl~  466 (657)
                      ||+++++++.+.+...+|++++++||+||+++.++.+..... ..+++|.|+|+++++|+|.++++.... ..++.|||+
T Consensus       428 GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~  506 (696)
T PLN02387        428 GGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIV  506 (696)
T ss_pred             cCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEE
Confidence            999999999988887789999999999999887766554333 348999999999999998555442221 223479999


Q ss_pred             EccCCcccccCCCchhhhcccc---CC--ccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccce
Q 006197          467 VRGKTLFSGYYKNPDLTRESII---DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED  541 (657)
Q Consensus       467 v~g~~~~~gy~~~~~~~~~~~~---~g--~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~  541 (657)
                      |+||+++.|||++++.|.+.|.   +|  ||+|||+|++|+||+++|.||.+|+||+++|++|+|.+||++|.+||.|.+
T Consensus       507 vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~  586 (696)
T PLN02387        507 IGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDN  586 (696)
T ss_pred             eccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeE
Confidence            9999999999999999999982   35  999999999999999999999999999877999999999999999999999


Q ss_pred             EEEEecCCCCeEEEEEecChhhHHHHHHHCCC-CccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCC
Q 006197          542 IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFD  620 (657)
Q Consensus       542 ~~vv~~~~~~~~~a~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~  620 (657)
                      |+|+|.+....++|+|+++++....|....+. ..++.+++.++++.+.+.+.+.+...++.|+.|++|+.|.+++++|+
T Consensus       587 ~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t  666 (696)
T PLN02387        587 IMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWT  666 (696)
T ss_pred             EEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCC
Confidence            99999887788999999999999999988877 56789999999999999999999988789999999999999999999


Q ss_pred             CCCCccccccccchHHHHHHHHHHHHHHHh
Q 006197          621 MERDLVTATLKKKRNKLLIYYQVEIDQLYE  650 (657)
Q Consensus       621 ~~~~P~t~~GKv~r~~l~~~~~~~i~~ly~  650 (657)
                      +++..+|+++|++|+.+.+.|+++|++||.
T Consensus       667 ~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~  696 (696)
T PLN02387        667 PESGLVTAALKLKREQIRKKFKDDLKKLYE  696 (696)
T ss_pred             CCCCcCChhhhhhhHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999994

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.8e-78  Score=677.99  Aligned_cols=619  Identities=25%  Similarity=0.380  Sum_probs=498.2

Q ss_pred             CCCCCCCCceeccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH
Q 006197           16 DGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA   95 (657)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~   95 (657)
                      .....+|++||.......  +.-....+|.++|.++++++|+++|+++.   + .+..|+++||+|+.+++.++|++|.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~  110 (746)
T PTZ00342         37 ATNENESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNT  110 (746)
T ss_pred             CCCCCCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHH
Confidence            345567779997776665  33456889999999999999999999863   2 22346899999999999999999997


Q ss_pred             c---CCCCC-----------CEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhh
Q 006197           96 S---GAEPG-----------CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE  161 (657)
Q Consensus        96 ~---G~~~g-----------d~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~  161 (657)
                      .   |+++|           |+|+|+++|+++|+++.+||+++|++.||+++.++.+++.++|+.++++++|++.+..+.
T Consensus       111 ~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~  190 (746)
T PTZ00342        111 YEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEG  190 (746)
T ss_pred             HhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHH
Confidence            4   99999           999999999999999999999999999999999999999999999999999998877776


Q ss_pred             hhccccccccCceEEEEecCCcHH-------------------H------------------------------------
Q 006197          162 LLSPDCRSAQRLRVMVCFTSLTAE-------------------Q------------------------------------  186 (657)
Q Consensus       162 ~~~~~~~~~~~~~~i~~~~~~~~~-------------------~------------------------------------  186 (657)
                      +.+.. ...+.++.+++++.....                   .                                    
T Consensus       191 l~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (746)
T PTZ00342        191 LLERK-NELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIK  269 (746)
T ss_pred             HHHhh-ccCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhH
Confidence            65433 234567788877652110                   0                                    


Q ss_pred             --HHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCC
Q 006197          187 --KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (657)
Q Consensus       187 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (657)
                        .......+.....++++.... ..........++|+++|+|||||||.||||++||+++++.+.......   .....
T Consensus       270 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~  345 (746)
T PTZ00342        270 DLKEKAKKLGISIILFDDMTKNK-TTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKY  345 (746)
T ss_pred             HHHHHhhcCCCEEEEHHHHHhhc-ccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCC
Confidence              000001112233444444332 111222345689999999999999999999999999998876543221   00123


Q ss_pred             CCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006197          265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (657)
Q Consensus       265 ~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (657)
                      +.|++++.+|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.+++.+.+.+.......+.+.+++
T Consensus       346 ~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~  425 (746)
T PTZ00342        346 NPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFL  425 (746)
T ss_pred             CCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            55899999999999999888888999999999877899999999999999999999999999988877766666666766


Q ss_pred             HHHHHHHHhhcCCCCCCcchhHHHH--HHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccc
Q 006197          345 FDALKLAWMNMGYKQREASPLADLL--AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT  422 (657)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~  422 (657)
                      +.+........  ......++++.+  .++++++.++++||.+++||+++++++.+++++.+|++++++||+||+++..+
T Consensus       426 ~~~a~~~~~~~--~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~  503 (746)
T PTZ00342        426 VKKILSLRKSN--NNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF  503 (746)
T ss_pred             HHHHHHHHHHh--hcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceee
Confidence            66643221111  011123445444  47889999999999999999999999999999888999999999999987766


Q ss_pred             cccCCCccccCccCcCc-cCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEE
Q 006197          423 VCFPDEMCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI  500 (657)
Q Consensus       423 ~~~~~~~~~~~~~G~~~-~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~  500 (657)
                      ...... ...+++|.|+ |+++++|++.++....  +.++.|||+++||+++.|||++|+.|.+.| .||||+|||+|++
T Consensus       504 ~~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~~~--~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~  580 (746)
T PTZ00342        504 VQHADD-NNTESIGGPISPNTKYKVRTWETYKAT--DTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQI  580 (746)
T ss_pred             eccCCC-CCcccccCcCCCcEEEEEecccccccC--CCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEE
Confidence            655433 3458999998 9999999984432221  223579999999999999999999999999 6999999999999


Q ss_pred             cCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEEecChhhHHHHHHHCC------C-
Q 006197          501 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG------H-  573 (657)
Q Consensus       501 ~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~~~~~a~v~~~~~~~~~~~~~~~------~-  573 (657)
                      |+||+|+|+||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|......++|+|+++.+....|....+      . 
T Consensus       581 d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~  660 (746)
T PTZ00342        581 NKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLESTGIN  660 (746)
T ss_pred             CCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCCccccccC
Confidence            999999999999999998789999999999999999999999999986667999999999999999987642      2 


Q ss_pred             CccHHHH-----hccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH---HHH
Q 006197          574 AGSFLEL-----CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ---VEI  645 (657)
Q Consensus       574 ~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~---~~i  645 (657)
                      ..++.++     +.++++.+.+.+.+.+..++..|++|.+++.|.++.++|+++. -+||+.|++|+.+.+.|+   +.|
T Consensus       661 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~-~lTpt~KlkR~~v~~~y~~~i~~i  739 (746)
T PTZ00342        661 EKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNN-YLTPTFKVKRFYVFKDYAFFIDQV  739 (746)
T ss_pred             cccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCC-ccChhhhhhHHHHHHHHHHHHHHH
Confidence            2334443     3455678899999999977778999999999999999999976 799999999999999999   677


Q ss_pred             HHHHhh
Q 006197          646 DQLYEK  651 (657)
Q Consensus       646 ~~ly~~  651 (657)
                      ++||.+
T Consensus       740 ~~~y~~  745 (746)
T PTZ00342        740 KKIYKN  745 (746)
T ss_pred             HHHhcC
Confidence            777764

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.1e-76  Score=665.28  Aligned_cols=623  Identities=29%  Similarity=0.482  Sum_probs=498.2

Q ss_pred             CCCCCceeccccCC----CCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecc----------cCCC--------CCCceE
Q 006197           19 PSVGPVYRNLLASN----GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPF----------VDGK--------FGPYVW   76 (657)
Q Consensus        19 ~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~----------~d~~--------~~~~~~   76 (657)
                      +..+++||......    .+........++.++|.++++++||++|+.+...          .++.        .+++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (700)
T PTZ00216         42 ENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRY  121 (700)
T ss_pred             CCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceE
Confidence            34688999765332    2222223567999999999999999999998510          0111        124689


Q ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcc
Q 006197           77 KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  156 (657)
Q Consensus        77 ~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~  156 (657)
                      +||+||.++++++|++|+++|+++||+|+|+++|++|++++++||+++|++++|+++.++.+++.++|+.++++++|++.
T Consensus       122 lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~  201 (700)
T PTZ00216        122 ITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNG  201 (700)
T ss_pred             eEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCc--cCCc-cCCCCCCCceEEEEecCCCCC
Q 006197          157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEM-EILPPQPFNICTIMYTSGTSG  233 (657)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~-~~~~~~~~~~~~i~~TSGTTG  233 (657)
                      .....+.............+++++.....    .........+|.+++..+.  .... ...+..++|+++++|||||||
T Consensus       202 ~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG  277 (700)
T PTZ00216        202 KNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTG  277 (700)
T ss_pred             HHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCC
Confidence            76655443322111112245555443211    0112344667888876542  1111 123346899999999999999


Q ss_pred             CCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecCChHHHHH-------
Q 006197          234 DPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD-------  306 (657)
Q Consensus       234 ~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~-------  306 (657)
                      .||||++||+++++.+..+...+......+.++|++++.+|++|.++......++..|+++++.  ++..+.+       
T Consensus       278 ~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~~~  355 (700)
T PTZ00216        278 DPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARPHG  355 (700)
T ss_pred             cCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccccc
Confidence            9999999999999887765443311111246789999999999999987766667888877663  4555544       


Q ss_pred             HHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEE
Q 006197          307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI  386 (657)
Q Consensus       307 ~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~  386 (657)
                      .+++++||++.++|.+++.+.+.........+.+.+.++++........ .......+.++.+.+++++..+++++|.++
T Consensus       356 ~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~  434 (700)
T PTZ00216        356 DLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRA-LKEGKDTPYWNEKVFSAPRAVLGGRVRAML  434 (700)
T ss_pred             hHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHhCCcEEEEE
Confidence            6789999999999999999998887776666666676666532211110 001123567888889999999999999999


Q ss_pred             EcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEE
Q 006197          387 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC  466 (657)
Q Consensus       387 ~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~  466 (657)
                      +||+++++++.++++..++ +++++||+||+++..+....... ..+++|+|+++++++|+| +++.......++.|||+
T Consensus       435 ~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~~GEL~  511 (700)
T PTZ00216        435 SGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEPRGEIL  511 (700)
T ss_pred             ECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCCCceEE
Confidence            9999999999988887778 99999999999877665544433 348999999999999999 44322223344579999


Q ss_pred             EccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccce--EE
Q 006197          467 VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED--IW  543 (657)
Q Consensus       467 v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~--~~  543 (657)
                      |+||+++.|||++++.|.+.| .||||+|||+|++|+||+++++||.||+||.++|++|+|.+||+++.+||.|.+  ++
T Consensus       512 vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~  591 (700)
T PTZ00216        512 LRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVC  591 (700)
T ss_pred             EcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEE
Confidence            999999999999999999999 799999999999999999999999999998558999999999999999999997  45


Q ss_pred             EEecCCCCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCC
Q 006197          544 VYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMER  623 (657)
Q Consensus       544 vv~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~  623 (657)
                      |++.++...++|+|+++.+....|....+...++.+++.++++.+.+.+.|.+..++..+..|..|+.|++++++|+++.
T Consensus       592 v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~  671 (700)
T PTZ00216        592 VLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPEN  671 (700)
T ss_pred             EEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCC
Confidence            55656678999999999999999988877666788899999999999999999988789999999999999999999999


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHhh
Q 006197          624 DLVTATLKKKRNKLLIYYQVEIDQLYEK  651 (657)
Q Consensus       624 ~P~t~~GKv~r~~l~~~~~~~i~~ly~~  651 (657)
                      ..+|+++|++|+++++.|++.||+||..
T Consensus       672 g~lT~t~K~~R~~i~~~y~~~i~~ly~~  699 (700)
T PTZ00216        672 GVLTAAMKLKRRVIDERYADLIKELFAD  699 (700)
T ss_pred             CCCChhhccchHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999974

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=8.9e-76  Score=625.64  Aligned_cols=583  Identities=36%  Similarity=0.569  Sum_probs=488.1

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      ...+++..++.++++.+|+.+++...     ..+.|+.+||+|+.+++.++|.+|+..|+..||+|+|++.|+++|+++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d   87 (613)
T COG1022          13 AEIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIAD   87 (613)
T ss_pred             hhcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34678999999999999998898865     3677899999999999999999999999977999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecC----CcHHHHHHHhh-C
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS----LTAEQKEMAVQ-T  193 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~-~  193 (657)
                      +||+.+|++.||+++..+++++.++|++++++++|++..........+....+.+.......+    ........... .
T Consensus        88 ~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (613)
T COG1022          88 LAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFP  167 (613)
T ss_pred             HHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccc
Confidence            999999999999999999999999999999999999996655444433322111111111111    00000000000 0


Q ss_pred             CcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCC-CCCCcEEEEe
Q 006197          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLSF  272 (657)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~~  272 (657)
                      ......+  ..... .......+..++|.|+|+|||||||.||||++||+|+++++..+...+     . .+++|++++.
T Consensus       168 ~~~~~~~--~~~~~-~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~Lsf  239 (613)
T COG1022         168 DEGISLF--LIDSA-GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSF  239 (613)
T ss_pred             cccchhh--hhccc-ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEe
Confidence            0000001  01111 111122466899999999999999999999999999999999988877     5 8899999999


Q ss_pred             cChhHHHHHHHHHHHHhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006197          273 LPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAW  352 (657)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (657)
                      +|+.|++..++.......++..++...++..+...+.+++||++.++|.+|+.+.+.+.+.....+..++.+|.+.-...
T Consensus       240 LPlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~  319 (613)
T COG1022         240 LPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVA  319 (613)
T ss_pred             CcHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            99999999987544444444455555699999999999999999999999999999999999999988887877732111


Q ss_pred             ------hhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccC
Q 006197          353 ------MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP  426 (657)
Q Consensus       353 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~  426 (657)
                            ...+-.........|++.++++++.+|.++|.+++||+++++++..+++.. |++++++||+||++..++.+++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~  398 (613)
T COG1022         320 YKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPP  398 (613)
T ss_pred             HHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccc
Confidence                  111111122233488999999999999999999999999999999999975 8999999999999999999988


Q ss_pred             CCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCc
Q 006197          427 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGV  505 (657)
Q Consensus       427 ~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~  505 (657)
                      +.... +++|.|+|+++++|+|             .|||+||||+++.|||++|+.|.++| .||||+|||+|.+|++|+
T Consensus       399 ~~~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~  464 (613)
T COG1022         399 DRFVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGY  464 (613)
T ss_pred             cCccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCc
Confidence            77776 9999999999999999             59999999999999999999999999 699999999999999999


Q ss_pred             EEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEEecChhhHHHHHHHCCC--CccHHHHhcc
Q 006197          506 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH--AGSFLELCSL  583 (657)
Q Consensus       506 l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~~~~~a~v~~~~~~~~~~~~~~~~--~~~~~~~~~~  583 (657)
                      |+++||++|+|++++|++|.|..||..+.++|.|.+++|+| ++...+.|+|+++.+....|......  ..+..+++.+
T Consensus       465 L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~  543 (613)
T COG1022         465 LVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLNKVISASREELARD  543 (613)
T ss_pred             EEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhccccccCCHHHHhhC
Confidence            99999999999999999999999999999999999999999 66889999999999999988887774  4678889999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhh
Q 006197          584 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL  652 (657)
Q Consensus       584 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~ly~~~  652 (657)
                      .++.+.+...+.+...  .+..+..++.+.++.++|+.+..-+|++-|++|..+.+.|++.|+.+|.+.
T Consensus       544 ~~l~~~~~~~i~~~~~--~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~~~  610 (613)
T COG1022         544 PKLLKLILPRVNKGNK--RLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSRQ  610 (613)
T ss_pred             HHHHHHHHHHHHHHhh--cccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHhhcc
Confidence            9999999999999886  558899999999999999999999999999999999999999999999875

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-73  Score=560.86  Aligned_cols=517  Identities=23%  Similarity=0.292  Sum_probs=437.8

Q ss_pred             CCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch
Q 006197           33 GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (657)
Q Consensus        33 ~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~  112 (657)
                      |....|-...|+.++++..+++.||+.|.++.   ...    .++||+|+.+.++++|++|...|+++||||++..||+.
T Consensus        41 g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~---~eg----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~  113 (596)
T KOG1177|consen   41 GCSQIPLDSETIGQLLETTTERVPDKEAAVFD---HEG----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSY  113 (596)
T ss_pred             CCCCCCcccccHHHHHHHHhhccCcceEEEEe---ecc----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChH
Confidence            33467888999999999999999999999986   222    56999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh-----hhhccc------------cccccCceE
Q 006197          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPD------------CRSAQRLRV  175 (657)
Q Consensus       113 e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~------------~~~~~~~~~  175 (657)
                      +|+.++|||+++|.+.+++||.+..++++..|++.+++++|+...+..     .+++..            .+..+.+.+
T Consensus       114 ~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lth  193 (596)
T KOG1177|consen  114 EWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTH  193 (596)
T ss_pred             HHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceE
Confidence            999999999999999999999999999999999999999999874322     111111            124467777


Q ss_pred             EEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCc-----cCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhh
Q 006197          176 MVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM-----EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS  250 (657)
Q Consensus       176 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~  250 (657)
                      ++..++..+         -.+...+++++.....+..     -.....++|++.|.|||||||.||++.+||.++++++.
T Consensus       194 vi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~  264 (596)
T KOG1177|consen  194 VILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNAR  264 (596)
T ss_pred             EEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHH
Confidence            777773322         2234566777766543221     12345789999999999999999999999999999999


Q ss_pred             hhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHH
Q 006197          251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIH  327 (657)
Q Consensus       251 ~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~  327 (657)
                      .....+     ++..++++++..|++|.+|... .+.++..|++++++..  ++...+++|.++|+|.++++|++|..|+
T Consensus       265 ~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dll  339 (596)
T KOG1177|consen  265 AVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLL  339 (596)
T ss_pred             HHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHh
Confidence            988887     8888999999999999999764 7778999999999765  9999999999999999999999999988


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCC-
Q 006197          328 EGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-  406 (657)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-  406 (657)
                      +...                                  ...+++        +++|..+.||+++++++++.+....++ 
T Consensus       340 n~~~----------------------------------~~~~~~--------s~lr~~vigGa~~s~eLlk~iv~~~~m~  377 (596)
T KOG1177|consen  340 NIPQ----------------------------------KQQVDL--------SSLRKGVIGGAPVSPELLKLIVNQMNMK  377 (596)
T ss_pred             cchh----------------------------------hccCch--------hhhhhheeCCCCCCHHHHHHHHHhhCce
Confidence            6433                                  222233        389999999999999999999886664 


Q ss_pred             ceeeeccCCCCCCccccccCCC--ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhh
Q 006197          407 FLVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR  484 (657)
Q Consensus       407 ~v~~~yG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~  484 (657)
                      .+...||+||++...+....++  .....++|..+++.|..++| .++...+.+  ..||||+||.+.+.|||++++.|.
T Consensus       378 ~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg~~~kT~  454 (596)
T KOG1177|consen  378 DIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWGEEEKTK  454 (596)
T ss_pred             eeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecCCcccch
Confidence            3778999999998877776555  34457999999999999999 777655554  579999999999999999999998


Q ss_pred             ccc-cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecC
Q 006197          485 ESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  560 (657)
Q Consensus       485 ~~~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~  560 (657)
                      +.. .|.||+|||.|.+|++|.++|+||++|+|+ ++|++|+|.+||+.|.+||.|.++.|||++|.   +.++|+|-+.
T Consensus       455 eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLq  533 (596)
T KOG1177|consen  455 ETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQ  533 (596)
T ss_pred             hhcccccceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEee
Confidence            888 899999999999999999999999999999 69999999999999999999999999998875   5899999998


Q ss_pred             hhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006197          561 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  640 (657)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~  640 (657)
                      .+...                      ....++|+.+++ .++.+|++|++|+++++ |     |+|-+|||+|-+++++
T Consensus       534 e~~e~----------------------~~t~E~lKa~Ck-~klaHFKiPky~vf~~~-F-----PlT~tGKIqKFeir~~  584 (596)
T KOG1177|consen  534 EGAEG----------------------KTTAETLKAMCK-GKLAHFKIPKYFVFVDE-F-----PLTTTGKIQKFEIREM  584 (596)
T ss_pred             ccccc----------------------cccHHHHHHHHh-cccccccCCcEEEEecc-C-----cccccccchhHHHHHH
Confidence            76411                      123466777776 67999999999999876 4     9999999999999999


Q ss_pred             HHHHH
Q 006197          641 YQVEI  645 (657)
Q Consensus       641 ~~~~i  645 (657)
                      .+..+
T Consensus       585 ~k~~l  589 (596)
T KOG1177|consen  585 SKGHL  589 (596)
T ss_pred             HHhhc
Confidence            98665

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-73  Score=605.11  Aligned_cols=507  Identities=27%  Similarity=0.359  Sum_probs=411.2

Q ss_pred             cCcHHHHHHHHHHcCCCC-CceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEeCCchhHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGN-RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG--AEPGCRVGIYGANCPQWVEA  117 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~-~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G--~~~gd~V~i~~~n~~e~~~~  117 (657)
                      ...+..+.+.. ..++++ +.+++.   +.. +  +.+||+|+..++.++|.+|.++|  +++||+|++++||++++..+
T Consensus        16 ~~~~~~l~~~~-~~~~~~~~~~i~~---~~~-g--~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~   88 (537)
T KOG1176|consen   16 LTPITFLGRPA-FVYLDRNTSLVYQ---DSD-G--RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVEL   88 (537)
T ss_pred             ccccccccccc-cccccCcceEEEe---cCC-C--cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHH
Confidence            33444444433 344444 788776   321 1  68999999999999999999875  89999999999999999999


Q ss_pred             HHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcce
Q 006197          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (657)
Q Consensus       118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (657)
                      ++||+.+|+++.++||.+.+.++.++++.++++++|++....+.+.+......   ..++++.......   ........
T Consensus        89 ~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~---~~~~~~~~  162 (537)
T KOG1176|consen   89 ALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGVI---SISDLVED  162 (537)
T ss_pred             HHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCcc---cccccccc
Confidence            99999999999999999999999999999999999999999888766543322   3444444321000   00000111


Q ss_pred             ee-HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          198 YS-WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       198 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                      .+ +..+........  ..+...+|++.++|||||||.||||++||++++.+.......+     .+...|+.++.+|++
T Consensus       163 ~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~  235 (537)
T KOG1176|consen  163 LDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLF  235 (537)
T ss_pred             ccchhhccccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHH
Confidence            11 333322221111  4556779999999999999999999999999999877655544     677799999999999


Q ss_pred             HHHHHHHHHHH-HhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhh
Q 006197          277 HILDRVIEEYF-FRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMN  354 (657)
Q Consensus       277 ~~~g~~~~~~~-l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (657)
                      |.+|+...+.+ +..|.++++... ++..+++.|++|++|++.++|.++..|++..                        
T Consensus       236 H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p------------------------  291 (537)
T KOG1176|consen  236 HIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSP------------------------  291 (537)
T ss_pred             HHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCC------------------------
Confidence            99999988875 555666666665 9999999999999999999999999987532                        


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC-CceeeeccCCCCCCccccccCCCccccC
Q 006197          355 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVG  433 (657)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~~~~  433 (657)
                                .....++        ++++.+.+||++++++..+++.+.++ ..+.++||+||+++.++.+...+...++
T Consensus       292 ----------~~~~~~l--------~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~  353 (537)
T KOG1176|consen  292 ----------IVKKYDL--------SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPG  353 (537)
T ss_pred             ----------ccCcccC--------CccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCccc
Confidence                      1222222        59999999999999999999999997 8899999999999888888776656679


Q ss_pred             ccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccC-CccccCceEEEcCCCcEEEEecC
Q 006197          434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRK  512 (657)
Q Consensus       434 ~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~-g~~~TGDl~~~~~~G~l~i~GR~  512 (657)
                      ++|.++++...++.+ +.+  ..++.++.||||++|++++.||+++|+.|++.|.+ |||+|||+|++|+||+|+|.+|.
T Consensus       354 svG~~~~g~~~~v~~-e~g--~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~  430 (537)
T KOG1176|consen  354 SVGRLLPGVRVKVLD-ETG--VSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRS  430 (537)
T ss_pred             ccCccccceEEEeeC-CCC--CCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecch
Confidence            999999988888887 544  45556678999999999999999999999999955 99999999999999999999999


Q ss_pred             cceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHH
Q 006197          513 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  589 (657)
Q Consensus       513 ~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (657)
                      +|+||. +|++|+|.|||++|.+||.|.||+|||.+|+   +.++|+|+++++.        ..                
T Consensus       431 KdlIk~-~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~--------~l----------------  485 (537)
T KOG1176|consen  431 KDLIKY-GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGS--------TL----------------  485 (537)
T ss_pred             hhheee-CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCC--------cC----------------
Confidence            999997 8999999999999999999999999998875   5999999999743        11                


Q ss_pred             HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          590 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       590 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                      -.++|.++++ +++|+|++|+.+.|+++.      |+|++|||+|+.|++++.+.
T Consensus       486 te~di~~~v~-k~l~~y~~~~~V~Fvd~l------PKs~~GKi~R~~lr~~~~~~  533 (537)
T KOG1176|consen  486 TEKDIIEYVR-KKLPAYKLPGGVVFVDEL------PKTPNGKILRRKLRDIAKKL  533 (537)
T ss_pred             CHHHHHHHHH-hhCChhhccCeEEEeccC------CCCCcchHHHHHHHHHHHhc
Confidence            1345555654 789999999999998775      99999999999999999864

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=5.9e-71  Score=581.21  Aligned_cols=498  Identities=21%  Similarity=0.222  Sum_probs=408.8

Q ss_pred             cHHHHHHHHHHc-CCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           43 TAWDIFSMSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        43 ~i~~~l~~~a~~-~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      --.++++++.+. .+|++|+++.   +..++. +++||+||.+.++++|+.|++ .|+ +||||++++|+.+|.++++||
T Consensus        10 ~~~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA   84 (528)
T COG0365          10 LALNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLA   84 (528)
T ss_pred             chhhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHH
Confidence            334467777663 5789999997   433333 899999999999999999997 468 999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccc--cCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      |+++|++.+|+.+..+++.+...+++++++++|+.+....+.........  .....+++.....              .
T Consensus        85 ~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~--------------~  150 (528)
T COG0365          85 TARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG--------------L  150 (528)
T ss_pred             HHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------c
Confidence            99999999999999999999999999999999999887654432111100  0000022222211              4


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhh-hcccccCCCCCCcEEEEecChhH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMTVDDVYLSFLPLAH  277 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~~~~d~~l~~~pl~~  277 (657)
                      .|.++.+.. ....+.....++|+++++|||||||+||+|+++|+.++........ .+     .+.++|++++..++.|
T Consensus       151 ~~~~~~~~~-~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~-----~~~~~Dv~w~~ad~GW  224 (528)
T COG0365         151 WYDEAVEKA-SEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG-----DLLPGDRFWNSSDPGW  224 (528)
T ss_pred             cHHHHhhcc-CCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh-----CCCCCCEEEeCCCchh
Confidence            666666554 2333444588999999999999999999999999977777665443 33     6779999999999999


Q ss_pred             HHHHHH-HHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006197          278 ILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAW  352 (657)
Q Consensus       278 ~~g~~~-~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (657)
                      .+|... .+.+|..|++++++.+    ++..+++.|+++++|++++.|+.++.|.+.-.                     
T Consensus       225 ~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~---------------------  283 (528)
T COG0365         225 IYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL---------------------  283 (528)
T ss_pred             hhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC---------------------
Confidence            999987 6778999999999876    28899999999999999999999999875311                     


Q ss_pred             hhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCcccc
Q 006197          353 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  432 (657)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~  432 (657)
                                   .+..+        +++||.+.+.||+|+++.++++.+.+|++|.+.||+||++++......  ....
T Consensus       284 -------------~~~~d--------lssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~--~~~~  340 (528)
T COG0365         284 -------------GEPYD--------LSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP--PVKN  340 (528)
T ss_pred             -------------ccccc--------chhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC--CcCC
Confidence                         12222        359999999999999999999999999999999999999966555544  3334


Q ss_pred             CccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccC--CcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEe
Q 006197          433 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  510 (657)
Q Consensus       433 ~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~--~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~G  510 (657)
                      ++.|.|+||+++.++| ++++  +++.++ |+|+++.|  +++.+||++++.+.+.|.++||.|||.+++|+||+++|.|
T Consensus       341 g~~g~p~pG~~~~vvd-d~g~--~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~i~G  416 (528)
T COG0365         341 GSSGLPLPGYAVRRVD-DEGN--PVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHG  416 (528)
T ss_pred             CCCCCCCCCceeEEEC-CCCC--cCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEEEEe
Confidence            6669999999999999 6644  444456 99999986  8999999999999999866699999999999999999999


Q ss_pred             cCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHH
Q 006197          511 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  587 (657)
Q Consensus       511 R~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (657)
                      |.||+|++ .|+++.+.|||++|.+||.|.||+|||.+++   +.+.|||+++++..                  ..   
T Consensus       417 R~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~------------------~~---  474 (528)
T COG0365         417 RSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVE------------------PN---  474 (528)
T ss_pred             eccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCC------------------hH---
Confidence            99999997 6999999999999999999999999998764   47999999998751                  11   


Q ss_pred             HHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          588 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       588 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                       .+.++|++++++...| +..|+.|.+++++      |+|.||||.|+.|++.+.+
T Consensus       475 -~L~~ei~~~vr~~~~~-~~~p~~i~fv~~L------PkT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         475 -ELAEEIRRHVARNIGP-HAIPRKIRFVDEL------PKTASGKIQRRLLRKILHK  522 (528)
T ss_pred             -HHHHHHHHHHHhccCc-ccCCceEEEecCC------CCCCcccHHHHHHHHHHhh
Confidence             5667777777645555 9999999998775      9999999999999998874

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.2e-70  Score=603.76  Aligned_cols=509  Identities=28%  Similarity=0.398  Sum_probs=417.2

Q ss_pred             CCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006197           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (657)
Q Consensus        38 ~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~  117 (657)
                      .....++.+++.++++.+|+++|+.+.   +..    .++||+||.++++++|++|++.|+++||+|+|+++|+++++++
T Consensus         7 ~~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~   79 (534)
T COG0318           7 MTAELTLASLLERAARRNPDRPALIFL---GRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIA   79 (534)
T ss_pred             ccccccHHHHHHHHHHhCCCceEEEEc---CCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence            345679999999999999999999986   432    1599999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcce
Q 006197          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (657)
Q Consensus       118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (657)
                      +|||+++|++++|+||.+...++.++++.+++++++++....+...... ...+....+..........          .
T Consensus        80 ~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~  148 (534)
T COG0318          80 FLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVA-EALPVVLVVLLVGDADDRL----------P  148 (534)
T ss_pred             HHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHh-ccCCcceEEEecccccccc----------c
Confidence            9999999999999999999999999999999999999987333322211 1112222222222211100          0


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCC--CCCCcEEEEecCh
Q 006197          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK--MTVDDVYLSFLPL  275 (657)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~--~~~~d~~l~~~pl  275 (657)
                      .++..+...............++|+++++|||||||.||+|++||+++..+...+...+     .  ++..|++++.+|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl  223 (534)
T COG0318         149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPL  223 (534)
T ss_pred             ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecCh
Confidence            13444433221222222226789999999999999999999999999999988877776     5  8999999999999


Q ss_pred             hHHHHHHHHHHH-HhcCcEEEEec---CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006197          276 AHILDRVIEEYF-FRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLA  351 (657)
Q Consensus       276 ~~~~g~~~~~~~-l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (657)
                      +|.+|+...+.+ ++.|+++++.+   .++..++..+.++++|+++++|+++..++++.....                 
T Consensus       224 ~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~-----------------  286 (534)
T COG0318         224 FHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD-----------------  286 (534)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc-----------------
Confidence            999999976665 99999999987   489999999999999999999999999875422110                 


Q ss_pred             HhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC-CceeeeccCCCCCCccccccCCC-c
Q 006197          352 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDE-M  429 (657)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~-~  429 (657)
                                       .+++       +++|.+++||+++++++.+++.+.++ ..++++||+||++..++.+.... .
T Consensus       287 -----------------~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~  342 (534)
T COG0318         287 -----------------DDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLL  342 (534)
T ss_pred             -----------------cccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhh
Confidence                             0010       13999999999999999999999987 57999999999998888777766 3


Q ss_pred             cccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccC-CccccCceEEEcCCCcEEE
Q 006197          430 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKI  508 (657)
Q Consensus       430 ~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~-g~~~TGDl~~~~~~G~l~i  508 (657)
                      ...+++|.|+|+++++|+| +++. .+.+ |++|||+++||+++.|||++|+.|.+.|.+ |||+|||+|++|++|+++|
T Consensus       343 ~~~~~~G~~~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i  419 (534)
T COG0318         343 AKPGSVGRPLPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYI  419 (534)
T ss_pred             hcCCcccccCCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEE
Confidence            3558889999999999999 5555 3333 779999999999999999999999998875 9999999999999999999


Q ss_pred             EecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHH
Q 006197          509 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  585 (657)
Q Consensus       509 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (657)
                      .||.+|+|+. +|++|+|.+||+++.+||.|.+|+|+|.+++   +.++|+|+++++..                     
T Consensus       420 ~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~---------------------  477 (534)
T COG0318         420 VGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD---------------------  477 (534)
T ss_pred             EeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC---------------------
Confidence            9999999996 8999999999999999999999999998865   69999999987530                     


Q ss_pred             HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          586 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       586 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                       .....++|.++++ ..++.|++|+.+.++++.      |+|++||++|+.|++++.+
T Consensus       478 -~~~~~~~i~~~~~-~~l~~~~~P~~v~~v~~l------P~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         478 -AELTAEELRAFLR-KRLALYKVPRIVVFVDEL------PRTASGKIDRRALREEYRA  527 (534)
T ss_pred             -CCCCHHHHHHHHH-hhhhcccCCeEEEEeCCC------CCCCchhhhHHHHHHHHHh
Confidence             0001234444444 589999999999997654      9999999999999999987

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.5e-67  Score=591.43  Aligned_cols=542  Identities=20%  Similarity=0.257  Sum_probs=426.8

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      ....++.++|+++++++|+++|+++.   + ..+.++++||+||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        36 ~~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~  111 (614)
T PRK08180         36 DYPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLA  111 (614)
T ss_pred             CcCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence            33568999999999999999999864   2 2344689999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCC-----hhHHHHHHhccCceEEEEcchh-hhhhhccccccccCceEEEEecCCcHHHHHHHhh
Q 006197          119 EACNALSLICVPLYDTLG-----PGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  192 (657)
                      |||+++|++++|+++.++     .+++.++++.++++++|++... ..........  ... .++.......        
T Consensus       112 lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~--------  180 (614)
T PRK08180        112 LAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVRGAVP--------  180 (614)
T ss_pred             HHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEecCCCC--------
Confidence            999999999999999988     7899999999999999998642 2211111111  111 2222221100        


Q ss_pred             CCcceeeHHHHHhcCccCC--ccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCC--CCcE
Q 006197          193 TGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT--VDDV  268 (657)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~--~~d~  268 (657)
                       .....++.+++.......  .......++++++|+|||||||.||+|++||+++..++......+     ...  .+++
T Consensus       181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~  254 (614)
T PRK08180        181 -GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPV  254 (614)
T ss_pred             -CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcE
Confidence             001234555554321111  111234678999999999999999999999999998877765544     332  5689


Q ss_pred             EEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006197          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (657)
Q Consensus       269 ~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (657)
                      +++.+|++|.+++.. .+.+++.|+++++.+.     ....+++.++++++|+++++|.++..|++.+....        
T Consensus       255 ~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~--------  326 (614)
T PRK08180        255 LVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDA--------  326 (614)
T ss_pred             EEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhch--------
Confidence            999999999999864 5667999999998753     34577889999999999999999999876543210        


Q ss_pred             HHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHh----cC--CceeeeccCCC
Q 006197          343 RIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC--AFLVQGYGLTE  416 (657)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~--~~v~~~yG~tE  416 (657)
                                                    ...+..+++||.+++||+++++++.+.+.+.    +|  .++++.||+||
T Consensus       327 ------------------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE  376 (614)
T PRK08180        327 ------------------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTE  376 (614)
T ss_pred             ------------------------------hhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccc
Confidence                                          0011123599999999999999999998874    33  67999999999


Q ss_pred             CCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccC
Q 006197          417 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  495 (657)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TG  495 (657)
                      +++.++...... ...+++|+|++++++++++ +         +..|||+++||+++.||+++++.+.+.| .||||+||
T Consensus       377 ~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TG  445 (614)
T PRK08180        377 TAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSG  445 (614)
T ss_pred             cCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCceecc
Confidence            987766544333 3458999999999999998 3         2369999999999999999999999988 68999999


Q ss_pred             ceEEE----cCCCcEEEEecCcceeecCCceeec--cHHHHHHHhcCcccceEEEEecCCCCeEEEEEecChhhHHHHHH
Q 006197          496 DIGQI----LPNGVVKIIDRKKNLIKISQGEYVA--LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAY  569 (657)
Q Consensus       496 Dl~~~----~~~G~l~i~GR~~d~i~~~~G~~v~--~~~iE~~l~~~~~V~~~~vv~~~~~~~~~a~v~~~~~~~~~~~~  569 (657)
                      |+|++    |++|+++++||.+|+|++++|++|+  +.++|..+.+||.|.+|+|+|.++ +.+.|+|+++++....+..
T Consensus       446 Dlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~-~~~~a~V~~~~~~~~~~~~  524 (614)
T PRK08180        446 DAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR-DEIGLLVFPNLDACRRLAG  524 (614)
T ss_pred             ceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCC-CceEEEEEcCHHHHHHHHh
Confidence            99999    4689999999999999877899877  778889999999999999999884 5688999999876555543


Q ss_pred             HCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHH
Q 006197          570 SNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY  649 (657)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~ly  649 (657)
                      .. ...+..+.++.+++.+++++.|.++.. ...+.+.+|+++.+++++|....+.+|++||++|+++++.|+++||+||
T Consensus       525 ~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY  602 (614)
T PRK08180        525 LL-ADASLAEVLAHPAVRAAFRERLARLNA-QATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALY  602 (614)
T ss_pred             hc-ccCCHHHHhcCHHHHHHHHHHHHHHHh-hccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHHh
Confidence            32 112233444667788888888888875 3445566999999999998888899999999999999999999999999


Q ss_pred             hhhC
Q 006197          650 EKLA  653 (657)
Q Consensus       650 ~~~~  653 (657)
                      .+..
T Consensus       603 ~~~~  606 (614)
T PRK08180        603 ADEP  606 (614)
T ss_pred             CCCC
Confidence            9654

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.6e-67  Score=589.43  Aligned_cols=562  Identities=21%  Similarity=0.251  Sum_probs=437.9

Q ss_pred             CCCCCCCCceeccccC----CCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHH
Q 006197           16 DGKPSVGPVYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS   91 (657)
Q Consensus        16 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~   91 (657)
                      ..+|...+.+|....+    +++|..+. ..++.++|+++++++||++|+++.   +...+.++++||+||.++++++|+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~   95 (624)
T PRK12582         20 NWKPPDISVERRADGSIVIKSRHPLGPY-PRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQ   95 (624)
T ss_pred             ccCCCceEEEEcCCceEEEecCCCCCCc-ccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHH
Confidence            4567777888876443    55665533 458999999999999999999875   333455789999999999999999


Q ss_pred             HHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCCh-----hHHHHHHhccCceEEEEcchh-hhhhhcc
Q 006197           92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP-----GAVNFILDHAEIDFVFVQDKK-VKELLSP  165 (657)
Q Consensus        92 ~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~ii~~~~~-~~~~~~~  165 (657)
                      +|++.|+++||+|+++++|++++++++|||+++|++++|++|.++.     +++.++++.++++++|++... .......
T Consensus        96 ~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~  175 (624)
T PRK12582         96 ALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAA  175 (624)
T ss_pred             HHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999875     899999999999999998642 2222221


Q ss_pred             ccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCC--ccCCCCCCCceEEEEecCCCCCCCceeeechH
Q 006197          166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHE  243 (657)
Q Consensus       166 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~  243 (657)
                      ...  ...+ ++..+....         ......+.++........  .......++++++|+|||||||.||+|++||+
T Consensus       176 ~~~--~~~~-~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~  243 (624)
T PRK12582        176 LDL--LDVT-VVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQR  243 (624)
T ss_pred             hhh--cCce-EEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHH
Confidence            111  1122 233322110         011224444443321110  11123457899999999999999999999999


Q ss_pred             hHHHhhhhhhhhcccccCCCC---CCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC--C---hHHHHHHHhhhcCe
Q 006197          244 TIATFVSGVDLFLDQFEDKMT---VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--D---LNALRDDLMELKPT  314 (657)
Q Consensus       244 ~l~~~~~~~~~~~~~~~~~~~---~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~--~---~~~~~~~i~~~~~t  314 (657)
                      ++..+.......+     ...   ..+++++.+|++|.+++.. .+.++..|+++++.+.  +   ...+++.++++++|
T Consensus       244 ~l~~~~~~~~~~~-----~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t  318 (624)
T PRK12582        244 MMCANIAMQEQLR-----PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPT  318 (624)
T ss_pred             HHHHHHHHHHHhc-----cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCe
Confidence            9988776654333     222   3589999999999999875 4557899999988653  2   34567788899999


Q ss_pred             EEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCH
Q 006197          315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST  394 (657)
Q Consensus       315 ~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~  394 (657)
                      +++++|.++..|.+.+....                              ...        ...+++||.+++||+++++
T Consensus       319 ~~~~vP~~~~~l~~~~~~~~------------------------------~~~--------~~~~~slr~i~~gGa~l~~  360 (624)
T PRK12582        319 VYGNVPAGYAMLAEAMEKDD------------------------------ALR--------RSFFKNLRLMAYGGATLSD  360 (624)
T ss_pred             EEeccCHHHHHHHHHHhhCH------------------------------HHH--------HHHhhheeEEEecCCCCCH
Confidence            99999999998875432110                              011        1112489999999999999


Q ss_pred             HHHHHHHHhc------CCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEc
Q 006197          395 EVEEFLRVTC------CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR  468 (657)
Q Consensus       395 ~~~~~~~~~~------~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~  468 (657)
                      ++.+++.+.+      +++++++||+||++.+++..... ....+++|.|++|+++++++          .|+.|||+|+
T Consensus       361 ~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~svG~p~pg~~v~i~~----------~G~~GEl~vr  429 (624)
T PRK12582        361 DLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD-TERVGLIGLPLPGVELKLAP----------VGDKYEVRVK  429 (624)
T ss_pred             HHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC-CCCCCCCCcCCCCcEEEEcc----------CCCceEEEEE
Confidence            9999998753      36899999999998765533322 23458999999999999985          3468999999


Q ss_pred             cCCcccccCCCchhhhccc-cCCccccCceEEE-c---CCCcEEEEecCcceeecCCceeeccHHHH--HHHhcCcccce
Q 006197          469 GKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI-L---PNGVVKIIDRKKNLIKISQGEYVALEYLE--NVYCVAPIIED  541 (657)
Q Consensus       469 g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~-~---~~G~l~i~GR~~d~i~~~~G~~v~~~~iE--~~l~~~~~V~~  541 (657)
                      |++++.|||++++.+.+.| .+|||+|||+|++ |   ++|+|+++||.+|+|++++|++|+|.+||  .++.+||.|.+
T Consensus       430 g~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~  509 (624)
T PRK12582        430 GPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHD  509 (624)
T ss_pred             CCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchhe
Confidence            9999999999999999988 6899999999998 4   46999999999999998789999998885  67889999999


Q ss_pred             EEEEecCCCCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCce-eeeEEEEecCCCC
Q 006197          542 IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFE-HIKGVILDPRPFD  620 (657)
Q Consensus       542 ~~vv~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~p~~i~~~~~~f~  620 (657)
                      |+|+|.+ +....++|++.......+....+  ....+.++.+++.+.+++.|.+++.  .+|.+. +|+++.+++++|.
T Consensus       510 a~VvG~~-~~~~g~lv~p~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~  584 (624)
T PRK12582        510 AVVAGQD-RAFIGLLAWPNPAACRQLAGDPD--AAPEDVVKHPAVLAILREGLSAHNA--EAGGSSSRIARALLMTEPPS  584 (624)
T ss_pred             EEEEcCC-CCcEEEEEecCHHHHHHHHhcCC--CCHHHHhcCHHHHHHHHHHHHHHHh--hcCCChhheEEEEEeCCCCC
Confidence            9999986 56677888888766544433221  1233445667888999999988876  688898 9999999999999


Q ss_pred             CCCCccccccccchHHHHHHHHHHHHHHHhhh
Q 006197          621 MERDLVTATLKKKRNKLLIYYQVEIDQLYEKL  652 (657)
Q Consensus       621 ~~~~P~t~~GKv~r~~l~~~~~~~i~~ly~~~  652 (657)
                      .+.+++|++||++|+++.+.|+++||+||...
T Consensus       585 ~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~~  616 (624)
T PRK12582        585 IDAGEITDKGYINQRAVLERRAALVERLYAEP  616 (624)
T ss_pred             ccCCcCCccccccHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999854

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.2e-68  Score=594.21  Aligned_cols=534  Identities=17%  Similarity=0.217  Sum_probs=405.8

Q ss_pred             CCC-CCcCcHHHHHHHHHHc--CCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch
Q 006197           36 SVD-SDLNTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (657)
Q Consensus        36 ~~~-~~~~~i~~~l~~~a~~--~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~  112 (657)
                      +.+ ...|+..++|+++++.  +|+++|+++.   ....+..+++||+||.++++++|++|+++|+++||+|+++++|++
T Consensus        52 wf~~~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~  128 (647)
T PTZ00237         52 WFKGGELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTL  128 (647)
T ss_pred             hCCCCeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH
Confidence            454 4466778888888765  7999999885   222233478999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchh---------hhhhhccccccccCceEEEEecCCc
Q 006197          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK---------VKELLSPDCRSAQRLRVMVCFTSLT  183 (657)
Q Consensus       113 e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~  183 (657)
                      ++++++|||+++|++++|+++.++.+++.++|+.++++++|+++..         .+.+.+...........++......
T Consensus       129 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~  208 (647)
T PTZ00237        129 EPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRND  208 (647)
T ss_pred             HHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCC
Confidence            9999999999999999999999999999999999999999997531         1111111110101123444331110


Q ss_pred             H-HHHHH----HhhCCcceeeHHHHHhcCc----cCCccCCCCCCCceEEEEecCCCCCCCceeeechHh-HHHhhhhhh
Q 006197          184 A-EQKEM----AVQTGIKPYSWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVD  253 (657)
Q Consensus       184 ~-~~~~~----~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~-l~~~~~~~~  253 (657)
                      . .....    ..........|.+++....    ..........++++++|+|||||||.||+|+++|++ +......+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~  288 (647)
T PTZ00237        209 ITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWR  288 (647)
T ss_pred             cccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHH
Confidence            0 00000    0000011234666654321    111122345789999999999999999999999998 443332222


Q ss_pred             hhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecCC-------hHHHHHHHhhhcCeEEEechHHHHHH
Q 006197          254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD-------LNALRDDLMELKPTLLAGVPRVFEKI  326 (657)
Q Consensus       254 ~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~~-------~~~~~~~i~~~~~t~l~~~p~~~~~l  326 (657)
                      ..+     ....+|++++..|+.|..+....+.++..|+++++++++       +..+++.|+++++|+++++|+++..|
T Consensus       289 ~~~-----~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l  363 (647)
T PTZ00237        289 SII-----EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYL  363 (647)
T ss_pred             Hhc-----CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHH
Confidence            223     567789999999999987666677889999999998752       57899999999999999999999988


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCC
Q 006197          327 HEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA  406 (657)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~  406 (657)
                      .+......                             ......        .+++||.++++|+++++++.+++.+.+|+
T Consensus       364 ~~~~~~~~-----------------------------~~~~~~--------~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~  406 (647)
T PTZ00237        364 IKTDPEAT-----------------------------IIRSKY--------DLSNLKEIWCGGEVIEESIPEYIENKLKI  406 (647)
T ss_pred             HhhCcccc-----------------------------cccccc--------CcchheEEEecCccCCHHHHHHHHHhcCC
Confidence            65311000                             000001        12489999999999999999999998999


Q ss_pred             ceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccC---CcccccCCCchhh
Q 006197          407 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLT  483 (657)
Q Consensus       407 ~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~---~~~~gy~~~~~~~  483 (657)
                      ++++.||+||+++.++..........+++|.|+++++++|+| +++..  ++.|+.|||++++|   +++.|||++++.+
T Consensus       407 ~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~--~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~  483 (647)
T PTZ00237        407 KSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKE--LNVNEIGEVAFKLPMPPSFATTFYKNDEKF  483 (647)
T ss_pred             CEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCC--CCCCCceEEEEeccCCchhhCceeCCHHHH
Confidence            999999999998765544332223348999999999999998 66554  45668999999986   7899999999999


Q ss_pred             hcccc--CCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEe
Q 006197          484 RESII--DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVV  558 (657)
Q Consensus       484 ~~~~~--~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~  558 (657)
                      .+.|.  +|||+|||+|++|++|+++++||+||+|++ +|++|+|.+||++|.+||.|.+|+|+|.+++   +.++|+|+
T Consensus       484 ~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv  562 (647)
T PTZ00237        484 KQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLV  562 (647)
T ss_pred             HHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEE
Confidence            87773  799999999999999999999999999997 7999999999999999999999999998764   58899999


Q ss_pred             cChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006197          559 PCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  638 (657)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~  638 (657)
                      ++++..       ...       .   ..+.+.++|+++++ ++|+++++|+.|+++++.      |+|++||++|+.|+
T Consensus       563 ~~~~~~-------~~~-------~---~~~~l~~~i~~~~~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~R~~Lr  618 (647)
T PTZ00237        563 LKQDQS-------NQS-------I---DLNKLKNEINNIIT-QDIESLAVLRKIIIVNQL------PKTKTGKIPRQIIS  618 (647)
T ss_pred             eccCcc-------ccC-------C---CHHHHHHHHHHHHH-hhcCccccCcEEEEcCCC------CCCCCccEeHHHHH
Confidence            875320       000       0   01234566667765 689999999999997664      99999999999999


Q ss_pred             HHHH
Q 006197          639 IYYQ  642 (657)
Q Consensus       639 ~~~~  642 (657)
                      +++.
T Consensus       619 ~~~~  622 (647)
T PTZ00237        619 KFLN  622 (647)
T ss_pred             HHHc
Confidence            9874

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=8.9e-67  Score=588.16  Aligned_cols=527  Identities=16%  Similarity=0.166  Sum_probs=406.7

Q ss_pred             CCCCC-cCcHHHHHHHHHH-cCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 006197           36 SVDSD-LNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (657)
Q Consensus        36 ~~~~~-~~~i~~~l~~~a~-~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e  113 (657)
                      +.+.. .|...++|+++++ .+|+++|+++.   ....+..+++||+||.++++++|++|++.|+++||+|+++++|+++
T Consensus        81 wf~g~~~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e  157 (666)
T PLN02654         81 WFKGGKTNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLME  157 (666)
T ss_pred             ccCCCEeeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Confidence            55544 4455778887776 48999999875   3333445789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhh---------ccccc---cccCceEEEEecC
Q 006197          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL---------SPDCR---SAQRLRVMVCFTS  181 (657)
Q Consensus       114 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~---------~~~~~---~~~~~~~i~~~~~  181 (657)
                      +++++|||+++|++++|+++.++.+++..+++.++++++|++........         .....   .......++....
T Consensus       158 ~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
T PLN02654        158 LPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYEN  237 (666)
T ss_pred             HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecc
Confidence            99999999999999999999999999999999999999999876432110         00000   0011112222221


Q ss_pred             CcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhh-hhhhhhccccc
Q 006197          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFE  260 (657)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~-~~~~~~~~~~~  260 (657)
                      ..................|+++.... ....+.....++|+++|+|||||||.||||+++|++++... ..+...+    
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~----  312 (666)
T PLN02654        238 QLAMKREDTKWQEGRDVWWQDVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF----  312 (666)
T ss_pred             cccccccccccccCCcccHHHHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc----
Confidence            10000000000000122344544322 11122334578999999999999999999999999976543 3333344    


Q ss_pred             CCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHH
Q 006197          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL  334 (657)
Q Consensus       261 ~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~  334 (657)
                       ++.++|++++.+|+.|..+... ++.+|..|++++++++     ++..+++.|+++++|+++++|+++..|.+..... 
T Consensus       313 -~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-  390 (666)
T PLN02654        313 -DYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY-  390 (666)
T ss_pred             -CCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc-
Confidence             7899999999999999998765 5678999999999864     6889999999999999999999999886531100 


Q ss_pred             HhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC---Cceeee
Q 006197          335 EELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQG  411 (657)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~  411 (657)
                                                     ....++        ++||.++++|+++++++.+++.+.+|   +++.+.
T Consensus       391 -------------------------------~~~~~l--------~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~  431 (666)
T PLN02654        391 -------------------------------VTRHSR--------KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT  431 (666)
T ss_pred             -------------------------------cccCCh--------hheeEEEEecCCCCHHHHHHHHHHhCCCCCceecc
Confidence                                           001112        48999999999999999999998887   689999


Q ss_pred             ccCCCCCCccccccCCC-ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhccc-
Q 006197          412 YGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI-  487 (657)
Q Consensus       412 yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g--~~~~~gy~~~~~~~~~~~-  487 (657)
                      ||+||+++......... ...++++|.|++|++++|+| +++..  ++.++.|||++++  |+++.|||++++.+...+ 
T Consensus       432 yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~--~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~  508 (666)
T PLN02654        432 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKE--IEGECSGYLCVKKSWPGAFRTLYGDHERYETTYF  508 (666)
T ss_pred             ccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCC--CCCCCceEEEEcCCCchhhhhhcCChHHHHHhhh
Confidence            99999988666544322 34568999999999999998 66653  4455789999999  789999999999887765 


Q ss_pred             --cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChh
Q 006197          488 --IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEE  562 (657)
Q Consensus       488 --~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~  562 (657)
                        .+|||+|||+|++|+||+++++||+||+|++ +|++|+|.+||++|.+||+|.+++|++.+++   +.++++|++.++
T Consensus       509 ~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~  587 (666)
T PLN02654        509 KPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEG  587 (666)
T ss_pred             hcCCCEEEeCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCC
Confidence              3899999999999999999999999999997 7999999999999999999999999997754   489999998875


Q ss_pred             hHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          563 DTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                      ..                 ..    ..+.++|+++++ .+|+.|++|+.|+++++.      |+|.+||++|++|++.+.
T Consensus       588 ~~-----------------~~----~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~l------P~T~sGKi~r~~l~~~~~  639 (666)
T PLN02654        588 VP-----------------YS----EELRKSLILTVR-NQIGAFAAPDKIHWAPGL------PKTRSGKIMRRILRKIAS  639 (666)
T ss_pred             CC-----------------CC----HHHHHHHHHHHH-HhCCCCcCCCEEEECCCC------CCCCCcCchHHHHHHHHc
Confidence            30                 11    233455666665 689999999999997654      999999999999998875


Q ss_pred             H
Q 006197          643 V  643 (657)
Q Consensus       643 ~  643 (657)
                      +
T Consensus       640 ~  640 (666)
T PLN02654        640 R  640 (666)
T ss_pred             C
Confidence            4

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.9e-66  Score=577.60  Aligned_cols=527  Identities=20%  Similarity=0.173  Sum_probs=405.2

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ..-++.++|++.++++|+++|+++.   +      +++||+||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus         5 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~l   75 (563)
T PLN02860          5 SQAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLL   75 (563)
T ss_pred             hhhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4568999999999999999999753   2      589999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++|+++.++.+++.++++.+++++++++...............+.+..++..++.......    .......
T Consensus        76 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~  151 (563)
T PLN02860         76 AVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFI----FLNSFLT  151 (563)
T ss_pred             HHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccccc----chhhccc
Confidence            999999999999999999999999999999999998764322111111112233333333321100000    0000111


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (657)
                      ++++...............++++++++|||||||.||+|+++|+++..+.......+     ++.++|+++..+|++|.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~  226 (563)
T PLN02860        152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIG  226 (563)
T ss_pred             cchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhc
Confidence            111111100001111223578999999999999999999999999988776655555     788999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCC
Q 006197          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK  358 (657)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (657)
                      ++...+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+.......                       
T Consensus       227 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-----------------------  283 (563)
T PLN02860        227 GLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT-----------------------  283 (563)
T ss_pred             cHHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhc-----------------------
Confidence            98878888999999988765 899999999999999999999999988754221100                       


Q ss_pred             CCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC---------
Q 006197          359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---------  428 (657)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---------  428 (657)
                                       ....++||.+++||+++++.+.+.+.+.+ +.++++.||+||+++.++......         
T Consensus       284 -----------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~  346 (563)
T PLN02860        284 -----------------WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQT  346 (563)
T ss_pred             -----------------cccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhh
Confidence                             01124899999999999999999999888 789999999999987554332111         


Q ss_pred             -------------ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCcccc
Q 006197          429 -------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  494 (657)
Q Consensus       429 -------------~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~T  494 (657)
                                   .....++|.|++++++++++ ++       .++.|||+++|+.++.|||++++.+.+.| .+|||+|
T Consensus       347 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~T  418 (563)
T PLN02860        347 LQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDT  418 (563)
T ss_pred             hhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCeEEc
Confidence                         11123789999999999998 43       35789999999999999999999998888 6899999


Q ss_pred             CceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHC
Q 006197          495 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSN  571 (657)
Q Consensus       495 GDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~  571 (657)
                      ||+|++|++|++++.||.+|+|++ +|++|+|.+||+++.+||+|.+|+|++.++.   +.++|+|++.++...  ..  
T Consensus       419 GDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~--~~--  493 (563)
T PLN02860        419 GDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIW--SD--  493 (563)
T ss_pred             cceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCcccc--cc--
Confidence            999999999999999999999997 8999999999999999999999999997654   588999998764210  00  


Q ss_pred             CCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006197          572 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  648 (657)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~l  648 (657)
                        .+ .......   .....+.|.+++.+..|++|++|+.++++.+.     +|+|++||++|++|++++.++++.+
T Consensus       494 --~~-~~~~~~~---~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~-----lP~t~~GKi~r~~L~~~~~~~~~~~  559 (563)
T PLN02860        494 --NE-KENAKKN---LTLSSETLRHHCREKNLSRFKIPKLFVQWRKP-----FPLTTTGKIRRDEVRREVLSHLQSL  559 (563)
T ss_pred             --cc-chhhccc---ccccHHHHHHHHhhCcccccccceEEEEEecC-----CCCCcccchhHHHHHHHHHHHHhcc
Confidence              00 0000000   01112456666654469999999998876433     4899999999999999998877654

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.2e-68  Score=508.61  Aligned_cols=501  Identities=20%  Similarity=0.191  Sum_probs=425.5

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..++.++|..+|.++||++|+++.   +      +++||+||+++++++|..|+++|+++||+|.+.+||..+|++++||
T Consensus        27 d~~l~d~L~~~A~~~pdriAv~d~---~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA   97 (542)
T COG1021          27 DRTLTDILTDHAARYPDRIAVIDG---E------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA   97 (542)
T ss_pred             CCcHHHHHHHHHhhcCCceEEecC---c------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence            678999999999999999999964   2      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh----hhhccccccccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (657)
                      ++++|+.+|.--|.....+|.++.+...++.+|++.....    .+........+.++++++.++.+..           
T Consensus        98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~-----------  166 (542)
T COG1021          98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP-----------  166 (542)
T ss_pred             HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------
Confidence            9999999999999999999999999999999999875432    2223333345778888888554311           


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                      ...+..+.... ....+..+.++++++++..+.||||.||.|..||+....+++.-....     .+++.++++|.+|..
T Consensus       167 ~~~~~~~~~~a-~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~A  240 (542)
T COG1021         167 SVLEAALCHPA-GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPAA  240 (542)
T ss_pred             chhhhhhhCcc-ccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEecccc
Confidence            11222222222 334445677888999999999999999999999999999999877777     899999999999999


Q ss_pred             HHHHHHH--HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM  353 (657)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (657)
                      |.+.+..  .+..++.|+++|+.+. ++...+..|++|++|+...+|.....|++..+.                     
T Consensus       241 HNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~---------------------  299 (542)
T COG1021         241 HNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEW---------------------  299 (542)
T ss_pred             cCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc---------------------
Confidence            9998875  7888999999999887 999999999999999999999999888765432                     


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccC
Q 006197          354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  433 (657)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~  433 (657)
                                   ...++        +|||.+-.||+.+++.+.+++...+|+.+.+.|||.|.-...+-.....+....
T Consensus       300 -------------~~~~L--------sSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~i~~  358 (542)
T COG1021         300 -------------ERADL--------SSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIH  358 (542)
T ss_pred             -------------ccCCc--------hheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHheee
Confidence                         11222        499999999999999999999999999999999999966555444444444557


Q ss_pred             ccCcCc-cCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEec
Q 006197          434 TAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR  511 (657)
Q Consensus       434 ~~G~~~-~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR  511 (657)
                      +-|+|+ |.-|++|+| .+++  +++.|+.|+|..+||+.++|||+.|..+...| .+|||+|||+.++|+||++.+.||
T Consensus       359 TQGrPlsP~DEvrvvD-~dg~--pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR  435 (542)
T COG1021         359 TQGRPLSPDDEVRVVD-ADGN--PVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGR  435 (542)
T ss_pred             cCCCcCCCcceeEEec-CCCC--CCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEee
Confidence            788886 688999999 6665  66777999999999999999999999999999 899999999999999999999999


Q ss_pred             CcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHH
Q 006197          512 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  588 (657)
Q Consensus       512 ~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (657)
                      .+|+|+ ++|++|..+|||+.|..||.|.+|++|..+|.   +..+|+|+.++...                 +.     
T Consensus       436 ~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~-----------------~~-----  492 (542)
T COG1021         436 VKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPL-----------------RA-----  492 (542)
T ss_pred             ehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCC-----------------CH-----
Confidence            999999 79999999999999999999999999998764   79999999998631                 11     


Q ss_pred             HHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          589 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       589 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                         ..|+.++.+..+..|++|++|.+++.      +|.|+-|||+|++|++++...
T Consensus       493 ---~qlr~~L~~~GlAa~K~PDrie~v~~------~P~T~VGKIdKk~Lr~~l~~~  539 (542)
T COG1021         493 ---AQLRRFLRERGLAAFKLPDRIEFVDS------LPLTAVGKIDKKALRRRLASR  539 (542)
T ss_pred             ---HHHHHHHHHcchhhhcCCcceeeccc------CCCcccccccHHHHHHHhhhh
Confidence               23445555678999999999999655      599999999999999987643

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.1e-65  Score=567.18  Aligned_cols=498  Identities=21%  Similarity=0.181  Sum_probs=390.7

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..++.+.|.+.++++|+++|+.+.   +.     +++||+||.++++++|.+|.+   .+||+|+++++|++++++++||
T Consensus        18 ~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA   86 (539)
T PRK06334         18 GKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFA   86 (539)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHH
Confidence            478999999999999999998754   22     479999999999999999987   3899999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|+++.++.+++.++|+.++++++|++.+....+.+...........++..++....            ..+
T Consensus        87 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~  154 (539)
T PRK06334         87 TLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LSF  154 (539)
T ss_pred             HHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------ccH
Confidence            99999999999999999999999999999999999876654432211100011123333321100            000


Q ss_pred             HHHHhc-----Ccc----CCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEE
Q 006197          201 DEFLHL-----GKV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (657)
Q Consensus       201 ~~l~~~-----~~~----~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (657)
                      .+....     ...    .........++++++++|||||||.||+|++||+++..........+     .+..+|++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~  229 (539)
T PRK06334        155 WEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMMS  229 (539)
T ss_pred             HHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEEE
Confidence            000000     000    00011234678999999999999999999999999998877665555     6788999999


Q ss_pred             ecChhHHHHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006197          272 FLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (657)
Q Consensus       272 ~~pl~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (657)
                      .+|++|.+++.. .+.++..|+++++...  ++..+++.|+++++|++.++|+++..|++......              
T Consensus       230 ~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------  295 (539)
T PRK06334        230 FLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE--------------  295 (539)
T ss_pred             ecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc--------------
Confidence            999999999875 5677999999988753  89999999999999999999999998875422110              


Q ss_pred             HHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCC
Q 006197          349 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD  427 (657)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~  427 (657)
                                                  ...++||.+++||+++++++.+++.+.+ +..+++.||+||++.+++.....
T Consensus       296 ----------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  347 (539)
T PRK06334        296 ----------------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVN  347 (539)
T ss_pred             ----------------------------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCC
Confidence                                        0114899999999999999999999887 68999999999998777655443


Q ss_pred             CccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc--cCCccccCceEEEcCCCc
Q 006197          428 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDGWFHTGDIGQILPNGV  505 (657)
Q Consensus       428 ~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~--~~g~~~TGDl~~~~~~G~  505 (657)
                      .....+++|.|+++++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+....  .+|||+|||+|++|++|.
T Consensus       348 ~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~  425 (539)
T PRK06334        348 SPKHESCVGMPIRGMDVLIVS-EETK-VPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGE  425 (539)
T ss_pred             CCCCCCcCceecCCCEEEEEc-CCCC-ccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCe
Confidence            333447899999999999998 4432 466778899999999999999999988654322  367999999999999999


Q ss_pred             EEEEecCcceeecCCceeeccHHHHHHHhcCcccce------EEEEecCCCC-eEEEEEecChhhHHHHHHHCCCCccHH
Q 006197          506 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED------IWVYGDSLKS-MLVAVVVPCEEDTKKWAYSNGHAGSFL  578 (657)
Q Consensus       506 l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~------~~vv~~~~~~-~~~a~v~~~~~~~~~~~~~~~~~~~~~  578 (657)
                      +++.||.+|+||+ +|++|+|.+||++|.+||+|.+      ++|++.++.. .++++++...                 
T Consensus       426 l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------  487 (539)
T PRK06334        426 LFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPT-----------------  487 (539)
T ss_pred             EEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccC-----------------
Confidence            9999999999997 8999999999999999999998      7888877543 4444544321                 


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          579 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       579 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                         +        .+++++++++..++.|++|+.+.++++.      |+|++|||+|++|++.....+
T Consensus       488 ---~--------~~~~~~~l~~~~~~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~~  537 (539)
T PRK06334        488 ---S--------ISEVNDILKNSKTSSILKISYHHQVESI------PMLGTGKPDYCSLNALAKSLF  537 (539)
T ss_pred             ---C--------hHHHHHHHHhcCCcccccchheeeeccc------ccccCCcccHHHHHHHHHHhh
Confidence               1        1234444443347899999999887664      999999999999998866543

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=7.3e-66  Score=579.21  Aligned_cols=525  Identities=16%  Similarity=0.141  Sum_probs=405.0

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      ...|.+.++|+++++.+|+++|+++.   +...+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus        49 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~  125 (628)
T TIGR02316        49 GRTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAM  125 (628)
T ss_pred             CEeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            33556678898888889999999885   333344578999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh---------hhhccccccccCceEEEEecCCcHHHHHH
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  189 (657)
                      |||+++|++++|+++.++.+++..+++.++++++|+++....         .+.............++.++......   
T Consensus       126 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---  202 (628)
T TIGR02316       126 LACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM---  202 (628)
T ss_pred             HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc---
Confidence            999999999999999999999999999999999999864321         11111111112234555554321100   


Q ss_pred             HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhh-hhhhhhcccccCCCCCCcE
Q 006197          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFEDKMTVDDV  268 (657)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~-~~~~~~~~~~~~~~~~~d~  268 (657)
                       ........++.++.........+.....++++++|+|||||||.||||+++|.+++.+. ......+     ++.++|+
T Consensus       203 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  276 (628)
T TIGR02316       203 -RLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQV  276 (628)
T ss_pred             -CcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcE
Confidence             00001123556655432222222233567999999999999999999999999976443 3333334     7889999


Q ss_pred             EEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006197          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (657)
Q Consensus       269 ~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (657)
                      +++..|+.|..++.. .+.+|..|++++++++     ++..+++.|+++++|+++++|+++..|.+.....         
T Consensus       277 ~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------  347 (628)
T TIGR02316       277 MFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW---------  347 (628)
T ss_pred             EEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc---------
Confidence            999999999988754 6678999999999864     6789999999999999999999998875421000         


Q ss_pred             HHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccc
Q 006197          343 RIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT  422 (657)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~  422 (657)
                                             .+        ...+++||.+++||+++++++.+++.+.++.++++.||+||++..++
T Consensus       348 -----------------------~~--------~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~  396 (628)
T TIGR02316       348 -----------------------LR--------KHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVL  396 (628)
T ss_pred             -----------------------cc--------cCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceee
Confidence                                   00        11125999999999999999999999988999999999999986554


Q ss_pred             cccCCC---ccccCccCcCccCeeEEEeecC-CCCCCCCCCCCCceEEEccC---CcccccCCCchhhhccc----cCCc
Q 006197          423 VCFPDE---MCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----IDGW  491 (657)
Q Consensus       423 ~~~~~~---~~~~~~~G~~~~~~~~~iv~~~-~~~~~~~~~~~~GEl~v~g~---~~~~gy~~~~~~~~~~~----~~g~  491 (657)
                      ....+.   ....+++|.|+++++++|+| + ++.  +++.++.|||+++||   +.+.||+++++.+.+.+    .++|
T Consensus       397 ~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~--~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~  473 (628)
T TIGR02316       397 AIMPGLDLKPVKLGSPGLPMYGYHLRVLD-EATGR--PCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPL  473 (628)
T ss_pred             cCCCCCCcCCCCCCCcccCcCCceEEEEE-CCCCC--CCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCE
Confidence            433221   23348899999999999998 5 343  455678999999998   56789999987776553    5789


Q ss_pred             cccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHH
Q 006197          492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWA  568 (657)
Q Consensus       492 ~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~  568 (657)
                      |+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++++|++.++..    
T Consensus       474 ~~TGD~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~----  548 (628)
T TIGR02316       474 YSSFDWGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDS----  548 (628)
T ss_pred             EECCceEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcc----
Confidence            999999999999999999999999997 7999999999999999999999999997654   47889988875420    


Q ss_pred             HHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          569 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                          .        .+......+.++|+++++ ++|+.|++|+.|++++..      |+|++||++|++|++.+.
T Consensus       549 ----~--------~~~~~~~~~~~~i~~~~~-~~L~~~~~P~~v~~v~~l------P~t~sGKi~r~~L~~~~~  603 (628)
T TIGR02316       549 ----A--------GDAHDPHAVETGMMDCVV-RQLGAVARPARVYFVAAL------PKTRSGKLLRRSIQALAE  603 (628)
T ss_pred             ----c--------ccccchHHHHHHHHHHHH-HhcCCCcCCCEEEEcCCC------CCCCchHHHHHHHHHHHc
Confidence                0        000011233455666665 689999999999997664      999999999999998764

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=9.7e-66  Score=579.05  Aligned_cols=523  Identities=17%  Similarity=0.196  Sum_probs=410.6

Q ss_pred             CCC-CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 006197           36 SVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (657)
Q Consensus        36 ~~~-~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~  114 (657)
                      +.+ ...|...++|+++++++|+++|+++.   +...+..+++||+||.+++.++|++|++.|+++||+|+++++|++++
T Consensus        50 wf~~~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~  126 (625)
T TIGR02188        50 WFVGGELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEA  126 (625)
T ss_pred             eCCCCEEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            444 34556677888888899999999986   33245568999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh---------hhhcccccccc-CceEEEEecCCcH
Q 006197          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQ-RLRVMVCFTSLTA  184 (657)
Q Consensus       115 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~-~~~~i~~~~~~~~  184 (657)
                      ++++|||+++|++++|+++.++.+++..+++.++++++|+++....         .+.+... ..+ .+..++..+....
T Consensus       127 ~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  205 (625)
T TIGR02188       127 AIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALE-KCPVSVEHVLVVRRTGN  205 (625)
T ss_pred             HHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHH-hCCCCccEEEEEcCCCC
Confidence            9999999999999999999999999999999999999999875321         1111111 112 3444555433211


Q ss_pred             HHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhh-hhhhcccccCCC
Q 006197          185 EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKM  263 (657)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~  263 (657)
                      ...    ........+.+++... ..........++++++|+|||||||.||+|+++|++++.+... ....+     ++
T Consensus       206 ~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~  275 (625)
T TIGR02188       206 PVP----WVEGRDVWWHDLMAKA-SAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DI  275 (625)
T ss_pred             CcC----ccccccccHHHHHhhc-CCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CC
Confidence            000    0001123455555432 1222233457789999999999999999999999998765433 22233     68


Q ss_pred             CCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 006197          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (657)
Q Consensus       264 ~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~  337 (657)
                      .++|++++..|++|..+... ++.+|..|++++++++     ++..+++.|+++++|+++++|+++..|.+.....    
T Consensus       276 ~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----  351 (625)
T TIGR02188       276 KDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW----  351 (625)
T ss_pred             CCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc----
Confidence            88999999999999988754 6678999999998763     6899999999999999999999999886532110    


Q ss_pred             chHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC---CceeeeccC
Q 006197          338 RPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGL  414 (657)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~  414 (657)
                                                  .+.        ..+++||.++++|+++++++.+++.+.++   +++++.||+
T Consensus       352 ----------------------------~~~--------~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~  395 (625)
T TIGR02188       352 ----------------------------VKK--------HDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQ  395 (625)
T ss_pred             ----------------------------ccc--------CCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccc
Confidence                                        000        11248999999999999999999998875   789999999


Q ss_pred             CCCCCccccccCC-CccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhccc---c
Q 006197          415 TETCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---I  488 (657)
Q Consensus       415 tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g--~~~~~gy~~~~~~~~~~~---~  488 (657)
                      ||+++.++....+ ....++++|+|++|++++|+| +++..++ +.|+.|||+++|  |+++.|||++++.+.+.+   .
T Consensus       396 TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~  473 (625)
T TIGR02188       396 TETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPF  473 (625)
T ss_pred             cccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccC
Confidence            9999876554333 233458999999999999998 6665443 266899999999  689999999998777765   4


Q ss_pred             CCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHH
Q 006197          489 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  565 (657)
Q Consensus       489 ~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~  565 (657)
                      +|||+|||+|++|++|+++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++.. 
T Consensus       474 ~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~-  551 (625)
T TIGR02188       474 PGYYFTGDGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYE-  551 (625)
T ss_pred             CCEEECCceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCC-
Confidence            799999999999999999999999999997 7999999999999999999999999997654   58899999887531 


Q ss_pred             HHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          566 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                                      ...    .+.++|+++++ ..|+.+++|+.|+++++.      |+|.+||++|+.|++.+..
T Consensus       552 ----------------~~~----~~~~~l~~~~~-~~l~~~~~P~~i~~v~~l------P~t~sGKi~r~~l~~~~~~  602 (625)
T TIGR02188       552 ----------------PDD----ELRKELRKHVR-KEIGPIAKPDKIRFVPGL------PKTRSGKIMRRLLRKIAAG  602 (625)
T ss_pred             ----------------CCH----HHHHHHHHHHH-hhcCCCccCcEEEECCCC------CCCCCccchHHHHHHHHcC
Confidence                            011    23445666665 689999999999987654      9999999999999988654

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.6e-65  Score=573.12  Aligned_cols=519  Identities=22%  Similarity=0.239  Sum_probs=406.4

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..++.++|.+.++++|+++|+++... ++.....+++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus        24 ~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA  102 (632)
T PRK07529         24 PASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG  102 (632)
T ss_pred             CCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            45899999999999999999987411 11112347899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhh-----hhhhccccccccCceEEEEecCCcHH--HHHHHh--
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAE--QKEMAV--  191 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~--  191 (657)
                      |+++| +++|+++.++.+++.++++.++++++|++....     ..+.... ...+.++.++..+.....  ...+..  
T Consensus       103 ~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~  180 (632)
T PRK07529        103 GEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVL-AALPELRTVVEVDLARYLPGPKRLAVPL  180 (632)
T ss_pred             HHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHH-hcCCcceeEEEecCcccccccccccccc
Confidence            99999 569999999999999999999999999976432     2221111 122445556555432100  000000  


Q ss_pred             ---hCCcceeeHHHHHhcCccCC-ccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCc
Q 006197          192 ---QTGIKPYSWDEFLHLGKVNE-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD  267 (657)
Q Consensus       192 ---~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d  267 (657)
                         .......++.+.+....... .......++++++++|||||||.||+|.+||+++..++......+     .+.++|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~d  255 (632)
T PRK07529        181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPGD  255 (632)
T ss_pred             cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCCC
Confidence               01122345555554432221 112234679999999999999999999999999998877766555     678999


Q ss_pred             EEEEecChhHHHHHHH-HHHHHhcCcEEEEecC----C---hHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhch
Q 006197          268 VYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (657)
Q Consensus       268 ~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~----~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~  339 (657)
                      ++++.+|++|.++... .+.++..|+++++.+.    +   ...+++.++++++|++.++|+++..|.+....       
T Consensus       256 ~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------  328 (632)
T PRK07529        256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-------  328 (632)
T ss_pred             EEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------
Confidence            9999999999998875 5677999999998753    1   36788999999999999999999988642100       


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCC
Q 006197          340 LRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG  419 (657)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~  419 (657)
                                                  .        ...++||.+++||+++++++.+++++.+|+++++.||+||++.
T Consensus       329 ----------------------------~--------~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~  372 (632)
T PRK07529        329 ----------------------------G--------HDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATC  372 (632)
T ss_pred             ----------------------------C--------CCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCc
Confidence                                        0        0114899999999999999999999989999999999999998


Q ss_pred             ccccccCCCccccCccCcCccCeeEEEeecCCCCC--CCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCc
Q 006197          420 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY--SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGD  496 (657)
Q Consensus       420 ~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~--~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD  496 (657)
                      .++.+........+++|.|+|+++++++..++++.  .+++.|+.|||+|+||+++.||++++. +...| .+|||+|||
T Consensus       373 ~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGD  451 (632)
T PRK07529        373 VSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTGD  451 (632)
T ss_pred             ccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCceEcCc
Confidence            77766554444568999999999999975333331  556778899999999999999998754 44445 789999999


Q ss_pred             eEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCC
Q 006197          497 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGH  573 (657)
Q Consensus       497 l~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~  573 (657)
                      +|++|++|++++.||.+|+|++ +|++|+|.+||+.|.+||+|.+|+|++.++.   +.++++|++.++..        .
T Consensus       452 lg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~--------~  522 (632)
T PRK07529        452 LGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGAS--------A  522 (632)
T ss_pred             EEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCC--------C
Confidence            9999999999999999999996 8999999999999999999999999997654   47899999876430        0


Q ss_pred             CccHHHHhccHHHHHHHHHHHHHHHHhCCCC-CceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          574 AGSFLELCSLVQLQNYILSELKNAAERNKLR-GFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                              ..        +++.++++ .+++ .+++|+.|.++++.      |+|++||++|++|++.+..
T Consensus       523 --------~~--------~~l~~~~~-~~l~~~~~~P~~i~~v~~l------P~t~~GKi~r~~Lr~~~~~  570 (632)
T PRK07529        523 --------TE--------AELLAFAR-DHIAERAAVPKHVRILDAL------PKTAVGKIFKPALRRDAIR  570 (632)
T ss_pred             --------CH--------HHHHHHHH-HhcchhccCCcEEEEecCC------CCCCCCcccHHHHHHHHHH
Confidence                    11        22333333 4554 57899999997664      9999999999999998755

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-65  Score=570.05  Aligned_cols=495  Identities=20%  Similarity=0.194  Sum_probs=402.4

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      .++.++|++.++++||++|+++.   +      +++||+||.+.++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~  119 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA  119 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48999999999999999999864   3      57999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006197          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (657)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (657)
                      +++|++++|+++.++.+++..+++.++++++|++.+....+... ......+..+........       ........++
T Consensus       120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  191 (549)
T PRK07788        120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSAL-PPDLGRLRAWGGNPDDDE-------PSGSTDETLD  191 (549)
T ss_pred             HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhh-ccccccceEEEEecCccc-------cCCcCcccHH
Confidence            99999999999999999999999999999999998776654332 112222333322221110       0112344666


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 006197          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (657)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (657)
                      ++......   ...+...+++++++|||||||.||+|.++|+++...+..+...+     ++..++++++.+|++|.+++
T Consensus       192 ~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~  263 (549)
T PRK07788        192 DLIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGW  263 (549)
T ss_pred             HHhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHH
Confidence            66643221   11223456789999999999999999999999998877765555     67889999999999999999


Q ss_pred             HHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCC
Q 006197          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQR  360 (657)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (657)
                      ...+.++..|+++++... ++..+++.++++++|++.++|+++..+.+........                        
T Consensus       264 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~------------------------  319 (549)
T PRK07788        264 AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAK------------------------  319 (549)
T ss_pred             HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCC------------------------
Confidence            877788999999988765 8999999999999999999999999886532210000                        


Q ss_pred             CcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCcc
Q 006197          361 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  440 (657)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~  440 (657)
                                      ...++||.+++||+++++++.+++.+.++.++++.||+||++..+...........+++|.|++
T Consensus       320 ----------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~  383 (549)
T PRK07788        320 ----------------YDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPK  383 (549)
T ss_pred             ----------------CCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCC
Confidence                            0114899999999999999999999989999999999999987655444333334579999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCC
Q 006197          441 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ  520 (657)
Q Consensus       441 ~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~  520 (657)
                      +++++++| +++.  +++.|+.|||+++|++++.||++++..   ...+|||+|||+|++|++|.+++.||.+|+|++ +
T Consensus       384 ~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~  456 (549)
T PRK07788        384 GVTVKILD-ENGN--EVPRGVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVS-G  456 (549)
T ss_pred             CcEEEEEC-CCcC--CCCCCCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEEE-C
Confidence            99999998 6655  444578999999999999999998765   345899999999999999999999999999996 8


Q ss_pred             ceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHH
Q 006197          521 GEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  597 (657)
Q Consensus       521 G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  597 (657)
                      |++|+|.+||+.|.+||+|.+|+|++.+++   +.++++|++.++.        ..        .        .++|+++
T Consensus       457 G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~--------~~--------~--------~~~l~~~  512 (549)
T PRK07788        457 GENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGA--------AL--------D--------EDAIKDY  512 (549)
T ss_pred             CEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCC--------CC--------C--------HHHHHHH
Confidence            999999999999999999999999997654   4789999887642        00        1        1334444


Q ss_pred             HHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197          598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  639 (657)
Q Consensus       598 ~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~  639 (657)
                      ++ .+||.|++|..|.++++.      |+|++||++|++|++
T Consensus       513 ~~-~~l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~  547 (549)
T PRK07788        513 VR-DNLARYKVPRDVVFLDEL------PRNPTGKVLKRELRE  547 (549)
T ss_pred             HH-HhhhcCCCCcEEEEeCCC------CCCCCcCEeHHHhhc
Confidence            44 679999999999997654      999999999999975

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.9e-65  Score=566.73  Aligned_cols=509  Identities=18%  Similarity=0.198  Sum_probs=414.2

Q ss_pred             CcCcHHHHHHHHHH-cCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           40 DLNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        40 ~~~~i~~~l~~~a~-~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      ..+.+.+++++++. .+|+++|+.+.   +..  ..+++||+||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  115 (570)
T PRK04319         41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL  115 (570)
T ss_pred             ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            45667789988887 48999999886   432  3478999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      |||+++|++++|+++.++.+++.++++.++++++|++..........   ..+..+.++..++...        ......
T Consensus       116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~  184 (570)
T PRK04319        116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD---DLPSLKHVLLVGEDVE--------EGPGTL  184 (570)
T ss_pred             HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh---cCCCceEEEEECCCcC--------CCcCcc
Confidence            99999999999999999999999999999999999998765543221   2234455555543211        011233


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                      ++.+++.... .........++++++++|||||||.||+|+++|+++...+......+     ++.++|++++..|++|.
T Consensus       185 ~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~  258 (570)
T PRK04319        185 DFNALMEQAS-DEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWV  258 (570)
T ss_pred             CHHHHHhhcC-CcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHh
Confidence            5565554432 22223345678999999999999999999999999998877766555     78889999999999998


Q ss_pred             HHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q 006197          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM  355 (657)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (657)
                      ++... .+.++..|+++++...  ++..+++.|+++++|+++++|++++.|.+.....                      
T Consensus       259 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------  316 (570)
T PRK04319        259 TGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL----------------------  316 (570)
T ss_pred             hCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc----------------------
Confidence            88764 6678999999988754  8999999999999999999999999886421100                      


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCcc
Q 006197          356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  435 (657)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~  435 (657)
                                ....        .+++||.++++|+++++++.+++.+.++.++++.||+||+++.++..........+++
T Consensus       317 ----------~~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~  378 (570)
T PRK04319        317 ----------VKKY--------DLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSM  378 (570)
T ss_pred             ----------cccC--------CcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcC
Confidence                      0000        1148999999999999999999999889999999999999976655443333445899


Q ss_pred             CcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCc
Q 006197          436 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  513 (657)
Q Consensus       436 G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g--~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~  513 (657)
                      |.|+++++++|++ +++...  +.|+.|||+++|  |.++.||+++++.+.+.|.+|||+|||+++++++|+++++||.+
T Consensus       379 G~p~~g~~~~i~d-~~~~~~--~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~GR~~  455 (570)
T PRK04319        379 GKPLPGIEAAIVD-DQGNEL--PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVD  455 (570)
T ss_pred             cCCCCCCEEEEEC-CCCCCC--CCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEecCC
Confidence            9999999999998 666543  567899999997  89999999999999999999999999999999999999999999


Q ss_pred             ceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHH
Q 006197          514 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  590 (657)
Q Consensus       514 d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (657)
                      |+|++ +|++|+|.+||+.|.+||.|.+++|++.++.   +.+++++++.++..                 ...    .+
T Consensus       456 d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~-----------------~~~----~~  513 (570)
T PRK04319        456 DVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYE-----------------PSE----EL  513 (570)
T ss_pred             CEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCC-----------------CCH----HH
Confidence            99997 8999999999999999999999999997654   57888888776420                 111    23


Q ss_pred             HHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          591 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       591 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                      .++|+++++ ++|+.|++|+.|+++++.      |+|++||++|++|+++..
T Consensus       514 ~~~l~~~~~-~~l~~~~~P~~i~~v~~i------P~t~~GKv~r~~L~~~~~  558 (570)
T PRK04319        514 KEEIRGFVK-KGLGAHAAPREIEFKDKL------PKTRSGKIMRRVLKAWEL  558 (570)
T ss_pred             HHHHHHHHH-HhcccccCCcEEEEeCCC------CCCCchhhhHHHHHHHHh
Confidence            345555554 689999999999997654      999999999999998753

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-64  Score=569.52  Aligned_cols=517  Identities=18%  Similarity=0.217  Sum_probs=405.5

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      .+...++|+++++++|+++|+++.   +...+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        66 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  142 (637)
T PRK00174         66 LNVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLA  142 (637)
T ss_pred             eEHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            344567888888999999999985   33333457899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh---------hhhccccccccCceEEEEecCCcHHHHHHHh
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  191 (657)
                      |+++|++++|+++.++.+++.++++.++++++|+++....         .+.+.. ...+....++.........    .
T Consensus       143 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~  217 (637)
T PRK00174        143 CARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEAL-ANCPSVEKVIVVRRTGGDV----D  217 (637)
T ss_pred             HHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHH-HhCCCccEEEEEcCCCCCc----C
Confidence            9999999999999999999999999999999999875421         111111 1123444555544321100    0


Q ss_pred             hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhh-hhhhcccccCCCCCCcEEE
Q 006197          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYL  270 (657)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l  270 (657)
                      ........+.++.... ....+.....++++++|+|||||||.||+|+++|++++.+... ....+     ++.++|+++
T Consensus       218 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~  291 (637)
T PRK00174        218 WVEGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYW  291 (637)
T ss_pred             cCCCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEE
Confidence            0011123455555432 2222233456789999999999999999999999998765433 22223     678899999


Q ss_pred             EecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006197          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (657)
Q Consensus       271 ~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (657)
                      +..|++|..+... .+.+|..|++++++++     ++..+++.|+++++|++.++|++++.|.+......          
T Consensus       292 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------  361 (637)
T PRK00174        292 CTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP----------  361 (637)
T ss_pred             EcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc----------
Confidence            9999999988764 6667999999998763     68999999999999999999999988865311000          


Q ss_pred             HHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC---CceeeeccCCCCCCcc
Q 006197          345 FDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGPT  421 (657)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~~~~~  421 (657)
                                            +        ...+++||.++++|+++++++.+++.+.++   +++++.||+||+++.+
T Consensus       362 ----------------------~--------~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~  411 (637)
T PRK00174        362 ----------------------K--------KYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIM  411 (637)
T ss_pred             ----------------------c--------cCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCce
Confidence                                  0        011248999999999999999999988775   7899999999999876


Q ss_pred             ccccCCC-ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhccc---cCCccccC
Q 006197          422 TVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFHTG  495 (657)
Q Consensus       422 ~~~~~~~-~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g--~~~~~gy~~~~~~~~~~~---~~g~~~TG  495 (657)
                      +....+. ....+++|.|++|++++|+| +++..  ++.|+.|||+++|  |+++.|||++++.+.+.+   .+|||+||
T Consensus       412 ~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~--~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG  488 (637)
T PRK00174        412 ITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNP--LEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTG  488 (637)
T ss_pred             EecCCCCCCcCCCcccCCCCCceEEEEC-CCCCC--CCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECC
Confidence            5443322 23357899999999999998 66654  4567899999999  689999999998877665   47999999


Q ss_pred             ceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCC
Q 006197          496 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNG  572 (657)
Q Consensus       496 Dl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~  572 (657)
                      |+|++|++|+++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++++|++.++..        
T Consensus       489 Dl~~~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~--------  559 (637)
T PRK00174        489 DGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEE--------  559 (637)
T ss_pred             ceEEEcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCC--------
Confidence            99999999999999999999997 7999999999999999999999999997653   57999999886530        


Q ss_pred             CCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          573 HAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                               ..    ..+.++|+++++ +.|+.|++|..|.+++.      +|+|++||++|++|++.+..
T Consensus       560 ---------~~----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~------lP~t~~GKi~R~~L~~~~~~  610 (637)
T PRK00174        560 ---------PS----DELRKELRNWVR-KEIGPIAKPDVIQFAPG------LPKTRSGKIMRRILRKIAEG  610 (637)
T ss_pred             ---------CC----HHHHHHHHHHHH-hhcCCccCCCEEEEcCC------CCCCCCcchHHHHHHHHHcC
Confidence                     01    122345555554 68999999999999765      49999999999999988654

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.5e-63  Score=552.95  Aligned_cols=504  Identities=23%  Similarity=0.258  Sum_probs=406.9

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      .++.++|++.++.+|+++|+++.   +...+.++++||.||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~  100 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC  100 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence            47999999999999999999886   433445689999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh----hhhccccccccCceEEEEecCCcHHHHHHHhhCCcce
Q 006197          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (657)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (657)
                      +++|++++|++|.++.+++.++++.++++++++++....    ............+..++.++...             .
T Consensus       101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~  167 (547)
T PRK13295        101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG-------------A  167 (547)
T ss_pred             HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC-------------c
Confidence            999999999999999999999999999999999875411    11111111223445555544321             1


Q ss_pred             eeHHHHHhcCc-----c--CCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEE
Q 006197          198 YSWDEFLHLGK-----V--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (657)
Q Consensus       198 ~~~~~l~~~~~-----~--~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (657)
                      .++.+++....     .  .........++++++++|||||||.||+|+++|+++...+......+     ++.++++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l  242 (547)
T PRK13295        168 DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDVIL  242 (547)
T ss_pred             cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCeEE
Confidence            12333332110     0  01111234678999999999999999999999999998888766665     788999999


Q ss_pred             EecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006197          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (657)
Q Consensus       271 ~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (657)
                      +.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..|........              
T Consensus       243 ~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--------------  308 (547)
T PRK13295        243 MASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG--------------  308 (547)
T ss_pred             EecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC--------------
Confidence            9999999998765 6678999999988776 89999999999999999999999988764321100              


Q ss_pred             HHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC
Q 006197          349 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  428 (657)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~  428 (657)
                                                  ..+++||.+++||+++++++.+++.+.++.++++.||+||++...+.+....
T Consensus       309 ----------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~  360 (547)
T PRK13295        309 ----------------------------RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDP  360 (547)
T ss_pred             ----------------------------CCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCc
Confidence                                        0124899999999999999999999988999999999999987665544322


Q ss_pred             -ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEE
Q 006197          429 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK  507 (657)
Q Consensus       429 -~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~  507 (657)
                       .....++|.|+++++++|+| +++.  +++.|+.|||+|+|++++.||+++++.+... .+|||+|||+|+++++|+++
T Consensus       361 ~~~~~~~~G~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~~g~l~  436 (547)
T PRK13295        361 DERASTTDGCPLPGVEVRVVD-ADGA--PLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDADGYIR  436 (547)
T ss_pred             chhccCccccccCCcEEEEEC-CCCC--CCCCCCCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcCCceEE
Confidence             22346889999999999998 6554  5566789999999999999999999888765 68999999999999999999


Q ss_pred             EEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccH
Q 006197          508 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  584 (657)
Q Consensus       508 i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (657)
                      +.||.+|+|++ +|++|+|.+||+.|.++++|.+++|++.++.   +.++++|++.++..          .      .  
T Consensus       437 ~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------~------~--  497 (547)
T PRK13295        437 ISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQS----------L------D--  497 (547)
T ss_pred             EEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCC----------C------C--
Confidence            99999999997 8999999999999999999999999996544   47888888875420          0      0  


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          585 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       585 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                            .+.+.+++++..++.|++|..+++++++      |+|.+||++|++|++++++
T Consensus       498 ------~~~l~~~~~~~~l~~~~~P~~i~~v~~l------P~t~sgK~~r~~L~~~~~~  544 (547)
T PRK13295        498 ------FEEMVEFLKAQKVAKQYIPERLVVRDAL------PRTPSGKIQKFRLREMLRG  544 (547)
T ss_pred             ------HHHHHHHHHhccCccccCCcEEEEeccC------CCCCCccccHHHHHHHHhc
Confidence                  1234444443579999999999997664      9999999999999887754

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.7e-64  Score=564.02  Aligned_cols=528  Identities=16%  Similarity=0.153  Sum_probs=404.8

Q ss_pred             CCCCC-cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 006197           36 SVDSD-LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (657)
Q Consensus        36 ~~~~~-~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~  114 (657)
                      +.+.. .|...++|+++++.+|+++|+++.   +...+..+++||+||.++++++|++|++.|+++||+|+++++|++++
T Consensus        46 wf~~~~~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~  122 (629)
T PRK10524         46 WFVGGRTNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEA  122 (629)
T ss_pred             cCCCcEeeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            44533 445578898888889999999985   33334457899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhh---------hhhhccccccccCceEEEEecCCcHH
Q 006197          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAE  185 (657)
Q Consensus       115 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~  185 (657)
                      ++++|||+++|++++|+++.++.+++..+++.++++++|+++...         +.+.+...........++.++.....
T Consensus       123 ~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~  202 (629)
T PRK10524        123 AFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAP  202 (629)
T ss_pred             HHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC
Confidence            999999999999999999999999999999999999999976421         11111111111223344444421100


Q ss_pred             HHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhh-hhhhcccccCCCC
Q 006197          186 QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMT  264 (657)
Q Consensus       186 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~  264 (657)
                      .    .........+.++.........+.....++++++++|||||||.||+|+++|.+++..... +...+     ++.
T Consensus       203 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~  273 (629)
T PRK10524        203 M----ARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGK  273 (629)
T ss_pred             c----CcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCC
Confidence            0    0001112345555443222222223356789999999999999999999999987654433 22333     678


Q ss_pred             CCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006197          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (657)
Q Consensus       265 ~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~  338 (657)
                      ++|++++..|+.|..+... ++.++..|++++++++     ++..+++.++++++|+++++|++++.|.+....      
T Consensus       274 ~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------  347 (629)
T PRK10524        274 AGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA------  347 (629)
T ss_pred             CCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc------
Confidence            8999999999999887654 5667999999998764     678899999999999999999999887542100      


Q ss_pred             hHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCC
Q 006197          339 PLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC  418 (657)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~  418 (657)
                                                .....+        +++||.+++||+++++++.+++.+.++.++++.||+||++
T Consensus       348 --------------------------~~~~~~--------l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~  393 (629)
T PRK10524        348 --------------------------LLRKHD--------LSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETG  393 (629)
T ss_pred             --------------------------cccccC--------hhheeEEEEeCCCCCHHHHHHHHHhcCCCeEecccccccc
Confidence                                      000011        1489999999999999999999998999999999999998


Q ss_pred             CccccccCC---CccccCccCcCccCeeEEEeecC-CCCCCCCCCCCCceEEEccC---CcccccCCCchhhhccc----
Q 006197          419 GPTTVCFPD---EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----  487 (657)
Q Consensus       419 ~~~~~~~~~---~~~~~~~~G~~~~~~~~~iv~~~-~~~~~~~~~~~~GEl~v~g~---~~~~gy~~~~~~~~~~~----  487 (657)
                      ..+......   .....+++|.|+++++++|+| + ++.  +++.|+.|||+++||   ..+.||+++++.+.+.+    
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~--~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~  470 (629)
T PRK10524        394 WPILAIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGE--PCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLF  470 (629)
T ss_pred             chhhcCCCCcccCcCCCCCcccCcCCceEEEEe-CCCCC--CCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccC
Confidence            544333221   123357999999999999999 5 554  456678999999998   57889999987766544    


Q ss_pred             cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhH
Q 006197          488 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDT  564 (657)
Q Consensus       488 ~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~  564 (657)
                      .+|||+|||+|++|++|+++++||.||+|++ +|.+|+|.+||++|.+||+|.+|+|++.+++   +.++++|++.++..
T Consensus       471 ~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~  549 (629)
T PRK10524        471 GRQVYSTFDWGIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDS  549 (629)
T ss_pred             CCcEEEcCCcEEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCc
Confidence            4689999999999999999999999999997 6999999999999999999999999997765   47889999876421


Q ss_pred             HHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          565 KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                              .        ...+....+.++|+++++ +.|+.|++|..|++++.      +|+|++||++|++|++.+.
T Consensus       550 --------~--------~~~~~~~~~~~~i~~~~~-~~l~~~~~P~~i~~v~~------lP~T~sGKi~R~~L~~~~~  604 (629)
T PRK10524        550 --------L--------ADREARLALEKEIMALVD-SQLGAVARPARVWFVSA------LPKTRSGKLLRRAIQAIAE  604 (629)
T ss_pred             --------c--------ccccchHHHHHHHHHHHH-hhcCCCcCCCEEEEcCC------CCCCCCcchHHHHHHHHHc
Confidence                    0        111122344556666665 68999999999999765      4999999999999998764

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-63  Score=564.24  Aligned_cols=518  Identities=20%  Similarity=0.186  Sum_probs=398.1

Q ss_pred             CCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006197           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (657)
Q Consensus        36 ~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~  115 (657)
                      +.+....|+.+.+..+  .+|+++|+++.   + ..+..+++||+||.+++.++|++|++.|+++||+|+++++|+++++
T Consensus        80 wf~~~~~n~~~~~~~~--~~~~~~Al~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v  153 (655)
T PRK03584         80 WFPGARLNYAENLLRH--RRDDRPAIIFR---G-EDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETV  153 (655)
T ss_pred             eCCCCEeeHHHHhhcc--CCCCCeEEEEE---C-CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence            5666666676665543  58999999986   3 3445689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhh---------hhhhccccccccCceEEEEecCCcHHH
Q 006197          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQ  186 (657)
Q Consensus       116 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~  186 (657)
                      +++|||+++|++++|+++.++.+++.++++.++++++|+++...         ..+.+. ....+.+..++.+.......
T Consensus       154 ~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~  232 (655)
T PRK03584        154 VAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAEL-RAALPSLEHVVVVPYLGPAA  232 (655)
T ss_pred             HHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHH-HhcCCCccEEEEEecCCCcc
Confidence            99999999999999999999999999999999999999987532         111111 11223334455443221000


Q ss_pred             HHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHh-hhhhhhhcccccCCCCC
Q 006197          187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTV  265 (657)
Q Consensus       187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~  265 (657)
                         ..........|.+++...............+++++|+|||||||.||||++||++++.+ .......+     ++.+
T Consensus       233 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~  304 (655)
T PRK03584        233 ---AAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGP  304 (655)
T ss_pred             ---cccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCC
Confidence               00011123456666553222222334456799999999999999999999999987644 44434444     7889


Q ss_pred             CcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 006197          266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (657)
Q Consensus       266 ~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~  340 (657)
                      +|++++..++.|.... ..+.++..|++++++++     ++..+++.++++++|++..+|+++..+.+...         
T Consensus       305 ~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------  374 (655)
T PRK03584        305 GDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL---------  374 (655)
T ss_pred             CCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC---------
Confidence            9999999999887543 45678999999999763     68999999999999999999999988753100         


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc--CCceeeeccCCCCC
Q 006197          341 RRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETC  418 (657)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~v~~~yG~tE~~  418 (657)
                                            .+ ....++        ++||.++++|+++++++.+++.+.+  +..+++.||+||++
T Consensus       375 ----------------------~~-~~~~~l--------~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~  423 (655)
T PRK03584        375 ----------------------VP-GETHDL--------SALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDIC  423 (655)
T ss_pred             ----------------------Cc-cccCCh--------hheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhh
Confidence                                  00 000111        4899999999999999999999887  47899999999987


Q ss_pred             CccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccC--CcccccCCCchhhh--ccc---cCCc
Q 006197          419 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ESI---IDGW  491 (657)
Q Consensus       419 ~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~--~~~~gy~~~~~~~~--~~~---~~g~  491 (657)
                      +.+...........+++|.|++|++++|+| +++..+   .++.|||+|+||  +++.|||++++.++  ..+   .+||
T Consensus       424 ~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~  499 (655)
T PRK03584        424 SCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGV  499 (655)
T ss_pred             cccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCE
Confidence            654433222233458899999999999999 666543   468999999996  78999999987543  222   2688


Q ss_pred             cccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHH
Q 006197          492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWA  568 (657)
Q Consensus       492 ~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~  568 (657)
                      |+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++++|++.++..    
T Consensus       500 ~~TGDl~~~d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~----  574 (655)
T PRK03584        500 WRHGDWIEITEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVT----  574 (655)
T ss_pred             eecCCeEEECCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCC----
Confidence            999999999999999999999999996 8999999999999999999999999997653   58999999886420    


Q ss_pred             HHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          569 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                                   ..    ..+.+.|+++++ ..|+.|++|+.|+++++.      |+|++|||+|++|++.+.
T Consensus       575 -------------~~----~~~~~~l~~~~~-~~L~~~~~P~~i~~v~~l------P~t~sGKi~r~~lr~~~~  624 (655)
T PRK03584        575 -------------LD----DALRARIRTTIR-TNLSPRHVPDKIIAVPDI------PRTLSGKKVELPVKKLLH  624 (655)
T ss_pred             -------------Cc----HHHHHHHHHHHH-hhCCCCcCCCEEEECCCC------CCCCCccchHHHHHHHHc
Confidence                         11    123345556654 689999999999997654      999999999999998874

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-63  Score=551.49  Aligned_cols=517  Identities=19%  Similarity=0.157  Sum_probs=398.9

Q ss_pred             CCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 006197           34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (657)
Q Consensus        34 ~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e  113 (657)
                      +-.++....++.+.|.++|+++|+++|+++.   ++.    +.+||+||.++++++|+.|.+.|+++||+|+++++|+++
T Consensus         6 ~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e   78 (540)
T PRK05857          6 FQAMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPE   78 (540)
T ss_pred             ccccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHH
Confidence            3456677789999999999999999999865   442    579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhC
Q 006197          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (657)
Q Consensus       114 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (657)
                      +++++|||+++|++++|+++..+.+++.++++.++++++|+++...... ..+........ ++..+......       
T Consensus        79 ~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-------  149 (540)
T PRK05857         79 TYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVTR-------  149 (540)
T ss_pred             HHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeecccccc-------
Confidence            9999999999999999999999999999999999999999988653211 11111111111 22222111000       


Q ss_pred             CcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEec
Q 006197          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (657)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~  273 (657)
                           .+......  ..........++++++++|||||||.||+|.+||+++.++........ ........++++++.+
T Consensus       150 -----~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  221 (540)
T PRK05857        150 -----ESEHSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEG-LNWVTWVVGETTYSPL  221 (540)
T ss_pred             -----cccccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcc-ccccccccCceeeecC
Confidence                 00000000  001112334678999999999999999999999999987654322110 0011456788999999


Q ss_pred             ChhHHHHHHHHHHHHhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197          274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM  353 (657)
Q Consensus       274 pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (657)
                      |++|.+++...+.+++.|+++++.+.++..+++.++++++|+++++|.++..|.+......                   
T Consensus       222 p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~-------------------  282 (540)
T PRK05857        222 PATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN-------------------  282 (540)
T ss_pred             CccccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC-------------------
Confidence            9999999887788899999987766688999999999999999999999988865321100                   


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC----c
Q 006197          354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----M  429 (657)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~----~  429 (657)
                                             ..++++|.+++||++++....+ +.+.++.++++.||+||++..........    .
T Consensus       283 -----------------------~~~~~lr~~~~gG~~~~~~~~~-~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~  338 (540)
T PRK05857        283 -----------------------ATVPSLRLVGYGGSRAIAADVR-FIEATGVRTAQVYGLSETGCTALCLPTDDGSIVK  338 (540)
T ss_pred             -----------------------CcCccceEEEEcCccCCchhHH-HHHHhCCeeecccCCCcCCceeeecccccccccc
Confidence                                   0124899999999999888775 44567999999999999986544333221    1


Q ss_pred             cccCccCcCccCeeEEEeecCCCCCCC----CCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCc
Q 006197          430 CMVGTAGPVSVYSELRLEEVPEMGYSP----LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  505 (657)
Q Consensus       430 ~~~~~~G~~~~~~~~~iv~~~~~~~~~----~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~  505 (657)
                      ...+++|.|++|++++|++ +++....    .+.++.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++|++|+
T Consensus       339 ~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~g~  417 (540)
T PRK05857        339 IEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGF  417 (540)
T ss_pred             cccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcCCce
Confidence            1347899999999999998 5544221    2346789999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhc
Q 006197          506 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  582 (657)
Q Consensus       506 l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  582 (657)
                      +++.||.+|+|++ +|++|+|.+||+.|..||+|.+|+|++.++.   +.++++++..+..                   
T Consensus       418 l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~-------------------  477 (540)
T PRK05857        418 FYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAEL-------------------  477 (540)
T ss_pred             EEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCC-------------------
Confidence            9999999999997 8999999999999999999999999997653   3566666665421                   


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          583 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       583 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                      .....+.+.+.+.+.++ ..++.|++|+.+.++++.      |+|++||++|++|++.+.+.-
T Consensus       478 ~~~~~~~l~~~~~~~~~-~~l~~~~~P~~v~~~~~i------P~t~~GKi~r~~l~~~~~~~~  533 (540)
T PRK05857        478 DESAARALKHTIAARFR-RESEPMARPSTIVIVTDI------PRTQSGKVMRASLAAAATADK  533 (540)
T ss_pred             ChhhHHHHHHHHHHHHH-hhhccccCCeEEEEhhcC------CCCCCcceeHHHHHHhhhhcc
Confidence            11112334455555554 579999999999997664      999999999999998887643

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=5.1e-63  Score=549.74  Aligned_cols=505  Identities=20%  Similarity=0.196  Sum_probs=391.7

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCC----CCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKF----GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~----~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~  116 (657)
                      ..++.++|...++++|+++|+++.   ++.+    ..++++||+||.++++++|++|.+.|+++||+|+++++|++++++
T Consensus         5 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~   81 (552)
T PRK09274          5 MANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFA   81 (552)
T ss_pred             hhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHH
Confidence            457889999999999999999875   3321    234589999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcch--hhhhhhccccccccCceEEEEecCCcHHHHHHHhhCC
Q 006197          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK--KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (657)
Q Consensus       117 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (657)
                      ++|||+++|++++|++|.++.+++..+++.++++++|++..  ....+....   ......++..+...          .
T Consensus        82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~  148 (552)
T PRK09274         82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------L  148 (552)
T ss_pred             HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------c
Confidence            99999999999999999999999999999999999998752  222111110   01222233222110          0


Q ss_pred             cceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecC
Q 006197          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (657)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (657)
                      .....+.++...............++++++++|||||||.||+|++||+++...+......+     ++.++|++++.+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p  223 (552)
T PRK09274        149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFP  223 (552)
T ss_pred             cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccC
Confidence            01113444332211112222334678999999999999999999999999999888776666     7888999999999


Q ss_pred             hhHHHHHHHHHHHHhcCcEEEEec--------CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006197          275 LAHILDRVIEEYFFRRGASVGYYH--------GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (657)
Q Consensus       275 l~~~~g~~~~~~~l~~G~~~v~~~--------~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (657)
                      ++|.++       +..|+++++..        .++..+++.|+++++|+++++|+++..|.+......            
T Consensus       224 l~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------  284 (552)
T PRK09274        224 LFALFG-------PALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG------------  284 (552)
T ss_pred             HHHhhh-------hhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC------------
Confidence            987654       34577777653        268899999999999999999999999876422110            


Q ss_pred             HHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc--CCceeeeccCCCCCCccccc
Q 006197          347 ALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVC  424 (657)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~v~~~yG~tE~~~~~~~~  424 (657)
                                                    ..+++||.+++||+++++++.+.+.+.+  |+++++.||+||++++++..
T Consensus       285 ------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  334 (552)
T PRK09274        285 ------------------------------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIE  334 (552)
T ss_pred             ------------------------------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeec
Confidence                                          0124899999999999999999999988  46999999999998765543


Q ss_pred             cCC---------CccccCccCcCccCeeEEEeecCCC-------CCCCCCCCCCceEEEccCCcccccCCCchhhhccc-
Q 006197          425 FPD---------EMCMVGTAGPVSVYSELRLEEVPEM-------GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-  487 (657)
Q Consensus       425 ~~~---------~~~~~~~~G~~~~~~~~~iv~~~~~-------~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-  487 (657)
                      ...         ......++|+|+++++++|+| +.+       ...+++.|+.|||+++|++++.||+++++.+...| 
T Consensus       335 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~  413 (552)
T PRK09274        335 SREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKI  413 (552)
T ss_pred             chhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhc
Confidence            221         111224789999999999998 432       22456778899999999999999999999888766 


Q ss_pred             --cCC--ccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC--CeEEEEEecCh
Q 006197          488 --IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCE  561 (657)
Q Consensus       488 --~~g--~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~--~~~~a~v~~~~  561 (657)
                        .+|  ||+|||+|++|++|+++++||.+|+|++ +|.+|+|.+||++|.+||+|.+|+|++.++.  +.++++|++.+
T Consensus       414 ~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~  492 (552)
T PRK09274        414 PDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELEP  492 (552)
T ss_pred             ccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEccC
Confidence              356  9999999999999999999999999997 7999999999999999999999999987654  36888888876


Q ss_pred             hhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccc--cccccchHHHHH
Q 006197          562 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT--ATLKKKRNKLLI  639 (657)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t--~~GKv~r~~l~~  639 (657)
                      +..        .        ..    +.+.+.+++.+.  .++.++.|+++.+++.      +|+|  ++|||+|++|++
T Consensus       493 ~~~--------~--------~~----~~l~~~l~~~l~--~~~~~~~~~~~~~~~~------lP~t~~~~GKi~r~~L~~  544 (552)
T PRK09274        493 GVA--------C--------SK----SALYQELRALAA--AHPHTAGIERFLIHPS------FPVDIRHNAKIFREKLAV  544 (552)
T ss_pred             ccc--------c--------ch----HHHhhhhHHHHH--hcCCCcceeEEeccCC------CCccccccccccHHHHHH
Confidence            431        0        11    123444555544  3456778888888655      4999  799999999999


Q ss_pred             HHHHHH
Q 006197          640 YYQVEI  645 (657)
Q Consensus       640 ~~~~~i  645 (657)
                      ++++.+
T Consensus       545 ~~~~~~  550 (552)
T PRK09274        545 WAAKQL  550 (552)
T ss_pred             HHHHhh
Confidence            987754

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=4e-63  Score=557.61  Aligned_cols=518  Identities=19%  Similarity=0.164  Sum_probs=391.4

Q ss_pred             CCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006197           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (657)
Q Consensus        36 ~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~  115 (657)
                      +.+....|+.+.+..+   +++++|+++.   + +.+..+++||+||.+++.++|++|++.|+++||+|+++++|+++++
T Consensus        81 wf~~~~~n~~~~~~~~---~~~~~a~~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~  153 (652)
T TIGR01217        81 WFPGARLNYAENLLRA---AGTEPALLYV---D-ETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAV  153 (652)
T ss_pred             ECCCCeeeHHHHHhcc---CCCCeEEEEE---C-CCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence            5555556666665542   5789999886   3 3445678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhh---------hhhhccccccccCceEEEEecCCcHHH
Q 006197          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQ  186 (657)
Q Consensus       116 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~  186 (657)
                      +++|||+++|++++|+++.++.+++..+++.++++++|+++...         +.+.+.. ...+.++.++.+.......
T Consensus       154 ~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~  232 (652)
T TIGR01217       154 VAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVR-KELPTLRAVVHIPYLGPRE  232 (652)
T ss_pred             HHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEeCCCCcc
Confidence            99999999999999999999999999999999999999987532         1121111 1223444555543211000


Q ss_pred             HHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHh-hhhhhhhcccccCCCCC
Q 006197          187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTV  265 (657)
Q Consensus       187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~  265 (657)
                      ..  .........|+++...............++++++|+|||||||.||||+++|++++.. .......+     ++.+
T Consensus       233 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~  305 (652)
T TIGR01217       233 TE--APKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGP  305 (652)
T ss_pred             cc--cccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCC
Confidence            00  0000122356666543211122223456789999999999999999999999986543 33333333     7889


Q ss_pred             CcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 006197          266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (657)
Q Consensus       266 ~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~  340 (657)
                      +|++++..|+.|... ...+.+|..|++++++++     ++..+++.++++++|++..+|.++..+...-          
T Consensus       306 ~d~~~~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~----------  374 (652)
T TIGR01217       306 GDRLFYYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAG----------  374 (652)
T ss_pred             CcEEEEeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcC----------
Confidence            999999999999753 335578999999999863     5788999999999999987777766543210          


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC--CceeeeccCCCCC
Q 006197          341 RRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETC  418 (657)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~--~~v~~~yG~tE~~  418 (657)
                                           ..+ ....++        ++||.+++||+++++++.+++.+.++  ..+.+.||+||++
T Consensus       375 ---------------------~~~-~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~  424 (652)
T TIGR01217       375 ---------------------VHP-ARTHDL--------SALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDIC  424 (652)
T ss_pred             ---------------------CCc-cccCCh--------hheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHh
Confidence                                 000 011112        49999999999999999999988775  4577899999975


Q ss_pred             CccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccC--CcccccCCCchhhh--cc-c--cCCc
Q 006197          419 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ES-I--IDGW  491 (657)
Q Consensus       419 ~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~--~~~~gy~~~~~~~~--~~-~--~~g~  491 (657)
                      +.............+++|.|.+|++++++| +++..+   .|+.|||+++||  +++.|||++++.++  +. |  .+||
T Consensus       425 ~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~  500 (652)
T TIGR01217       425 SCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGV  500 (652)
T ss_pred             ccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCE
Confidence            443322222233458899999999999998 766644   368999999996  68899999997654  22 2  2689


Q ss_pred             cccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHH
Q 006197          492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWA  568 (657)
Q Consensus       492 ~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~  568 (657)
                      |+|||+|++|+||+++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..    
T Consensus       501 ~~tGDlg~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~----  575 (652)
T TIGR01217       501 WRHGDWITLTPRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGAT----  575 (652)
T ss_pred             EEcCCcEEECCCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCC----
Confidence            999999999999999999999999996 8999999999999999999999999997754   58999999886430    


Q ss_pred             HHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          569 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                                   ..    +.+.++|+++++ ++|+.|++|+.|++++..      |+|++||++|+.|++.+.
T Consensus       576 -------------~~----~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~r~~Lr~~~~  625 (652)
T TIGR01217       576 -------------LD----DALLDRIKRTIR-AGLSPRHVPDEIIEVPGI------PHTLTGKRVEVAVKRVLQ  625 (652)
T ss_pred             -------------CC----HHHHHHHHHHHH-hhCCCCcCCCEEEECCCC------CCCCCccChHHHHHHHHc
Confidence                         11    123445566665 689999999999997654      999999999999999873

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=8e-63  Score=548.11  Aligned_cols=505  Identities=23%  Similarity=0.264  Sum_probs=393.0

Q ss_pred             cHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        43 ~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      ++.+.+... +.+|+++|+++.   ++.    .++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||
T Consensus        41 ~~~~~l~~~-~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~  112 (560)
T PLN02574         41 DAVSFIFSH-HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAV  112 (560)
T ss_pred             CHHHHHhcC-cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHH
Confidence            443433333 679999999864   321    369999999999999999999 99999999999999999999999999


Q ss_pred             HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006197          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (657)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (657)
                      +++|++++|++|..+.+++.++++.+++++++++.+....+...      ... ++.+......     .........+.
T Consensus       113 ~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~-----~~~~~~~~~~~  180 (560)
T PLN02574        113 LSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGVPENYDF-----DSKRIEFPKFY  180 (560)
T ss_pred             HHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEecCccccc-----ccCccCcccHH
Confidence            99999999999999999999999999999999998766554321      111 1221110000     00001122445


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 006197          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (657)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (657)
                      +++.... .........++++++++|||||||.||+|++||+++...+..+.............+++++..+|++|.+++
T Consensus       181 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~  259 (560)
T PLN02574        181 ELIKEDF-DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGL  259 (560)
T ss_pred             HHhhcCC-cccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHH
Confidence            5443321 122223346789999999999999999999999999887765533211111123467899999999999998


Q ss_pred             HHH-HHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCC
Q 006197          282 VIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQ  359 (657)
Q Consensus       282 ~~~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (657)
                      ... +.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+.....                          
T Consensus       260 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------  313 (560)
T PLN02574        260 SLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV--------------------------  313 (560)
T ss_pred             HHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc--------------------------
Confidence            764 456788999888876 8999999999999999999999999886532100                          


Q ss_pred             CCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCC-CccccCccCc
Q 006197          360 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD-EMCMVGTAGP  437 (657)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~  437 (657)
                                     ....++++|.+++||+++++++.+++.+.+ +.++++.||+||++..++..... .....+++|.
T Consensus       314 ---------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~  378 (560)
T PLN02574        314 ---------------CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGL  378 (560)
T ss_pred             ---------------ccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceee
Confidence                           000124899999999999999999998887 78999999999998765432222 2234589999


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecCccee
Q 006197          438 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI  516 (657)
Q Consensus       438 ~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i  516 (657)
                      ++++++++|+| ++++ .+++.|+.|||||+|++++.||+++++.+.+.| .+|||+|||+|++|++|++++.||.+|+|
T Consensus       379 ~~~~~~v~i~d-~~~g-~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i  456 (560)
T PLN02574        379 LAPNMQAKVVD-WSTG-CLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEII  456 (560)
T ss_pred             eCCCcEEEEEe-CCCC-cCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhhe
Confidence            99999999998 4433 466678899999999999999999999998888 68999999999999999999999999999


Q ss_pred             ecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHH
Q 006197          517 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  593 (657)
Q Consensus       517 ~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (657)
                      ++ +|++|++.+||++|.+||+|.+++|++.++.   +.++++|+..++.        ..        .        .+.
T Consensus       457 ~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~--------~--------~~~  511 (560)
T PLN02574        457 KY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS--------TL--------S--------QEA  511 (560)
T ss_pred             EE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCC--------CC--------C--------HHH
Confidence            97 7999999999999999999999999997653   4688888876532        00        0        123


Q ss_pred             HHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          594 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       594 l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                      |.++++ ++|+.|++|+.+.++++.      |+|++||++|+.|++++.+
T Consensus       512 l~~~~~-~~l~~~~~p~~v~~v~~i------P~t~~GKi~r~~L~~~~~~  554 (560)
T PLN02574        512 VINYVA-KQVAPYKKVRKVVFVQSI------PKSPAGKILRRELKRSLTN  554 (560)
T ss_pred             HHHHHH-HhccCcccCcEEEEeecc------CCCCcchhhHHHHHHHHhh
Confidence            444443 679999999999887664      9999999999999988754

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.9e-62  Score=536.71  Aligned_cols=477  Identities=26%  Similarity=0.322  Sum_probs=397.5

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      +.++++.|.+++.++||++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA   71 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468999999999999999999874   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|+++..+.+++..+++.+++++++++...........                              ...+
T Consensus        72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~  121 (483)
T PRK03640         72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF  121 (483)
T ss_pred             HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence            9999999999999999999999999999999999876554331110                              0012


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (657)
                      .++...............++++++++|||||||.||+|.+||.++...+......+     ++.++|++++.+|++|.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  196 (483)
T PRK03640        122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG  196 (483)
T ss_pred             HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence            22222211111222334678999999999999999999999999988776655555     7889999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCC
Q 006197          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQ  359 (657)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (657)
                      +...+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.....+.                          
T Consensus       197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------  250 (483)
T PRK03640        197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------  250 (483)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence            8888888999999998876 8999999999999999999999999886432110                          


Q ss_pred             CCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCC-CccccCccCcC
Q 006197          360 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGTAGPV  438 (657)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~  438 (657)
                                       ....++|.+++||+++++.+.+.+.+. ++++++.||+||++..+...... .....+++|+|
T Consensus       251 -----------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p  312 (483)
T PRK03640        251 -----------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKP  312 (483)
T ss_pred             -----------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCcccc
Confidence                             011389999999999999999988874 99999999999988654433332 33445899999


Q ss_pred             ccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeec
Q 006197          439 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI  518 (657)
Q Consensus       439 ~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~  518 (657)
                      ++++++++++ ++   .+++.++.|||+++||+++.||+++++.+...|.+|||+|||+++++++|.+++.||.+|++++
T Consensus       313 ~~~~~~~i~~-~~---~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~  388 (483)
T PRK03640        313 LFPCELKIEK-DG---VVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIIS  388 (483)
T ss_pred             cCCcEEEEec-CC---CcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCeEEe
Confidence            9999999998 43   3566778999999999999999999999999899999999999999999999999999999996


Q ss_pred             CCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHH
Q 006197          519 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK  595 (657)
Q Consensus       519 ~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  595 (657)
                       +|.+|++.+||+.+.++++|.+++|++.+++   ..+++++++....                  +.        +.++
T Consensus       389 -~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~------------------~~--------~~l~  441 (483)
T PRK03640        389 -GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV------------------TE--------EELR  441 (483)
T ss_pred             -CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC------------------CH--------HHHH
Confidence             8999999999999999999999999987653   3677767755422                  11        2233


Q ss_pred             HHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          596 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       596 ~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                      ++++ ..|++|++|..|+++++.      |+|++||++|++|++++++
T Consensus       442 ~~~~-~~l~~~~~p~~i~~~~~i------P~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        442 HFCE-EKLAKYKVPKRFYFVEEL------PRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             HHHH-HhccCCCCCcEEEEeCCC------CCCCccceeHHHHHHHHhh
Confidence            4443 579999999999997664      9999999999999999875

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=3.8e-62  Score=540.64  Aligned_cols=505  Identities=26%  Similarity=0.314  Sum_probs=404.3

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      +...++.+++.++++++|+++|+++.   +..    +++||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        20 ~~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~   92 (537)
T PLN02246         20 PNHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAF   92 (537)
T ss_pred             CCCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence            44568999999999999999999864   321    58999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      +||+++|++++|+++..+.+++..+++.++++++|++....+.+......  ... .++..+....           ...
T Consensus        93 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~-----------~~~  158 (537)
T PLN02246         93 LGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DGV-TVVTIDDPPE-----------GCL  158 (537)
T ss_pred             HHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CCc-eEEEeCCCCC-----------Cce
Confidence            99999999999999999999999999999999999998776654332210  111 3444433210           122


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                      .+.++.... ....+.....++++++++|||||||.||+|+++|+++............ ....+.++|++++.+|++|.
T Consensus       159 ~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~pl~~~  236 (537)
T PLN02246        159 HFSELTQAD-ENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-PNLYFHSDDVILCVLPMFHI  236 (537)
T ss_pred             eHHHHhcCC-CCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccc-cccCCCCCcEEEEeechHHH
Confidence            344443322 1122223346789999999999999999999999999887665432110 01267899999999999999


Q ss_pred             HHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG  356 (657)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (657)
                      +++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+.....                       
T Consensus       237 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------  293 (537)
T PLN02246        237 YSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVE-----------------------  293 (537)
T ss_pred             HHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcccc-----------------------
Confidence            99865 5567999999999876 8999999999999999999999988876421100                       


Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCC----Cccc
Q 006197          357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----EMCM  431 (657)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~----~~~~  431 (657)
                                 ..        .++++|.+++||+++++++.+.+.+.+ +..+++.||+||++.+++.+...    ....
T Consensus       294 -----------~~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  354 (537)
T PLN02246        294 -----------KY--------DLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVK  354 (537)
T ss_pred             -----------cc--------CccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCcccc
Confidence                       00        114899999999999999999999987 67899999999998765543211    1223


Q ss_pred             cCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEe
Q 006197          432 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID  510 (657)
Q Consensus       432 ~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~G  510 (657)
                      .+++|+|++++++++++ ++++ .+++.|+.|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|++++.|
T Consensus       355 ~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~G  432 (537)
T PLN02246        355 SGSCGTVVRNAELKIVD-PETG-ASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVD  432 (537)
T ss_pred             CCccccccCCcEEEEec-CCCC-CcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEe
Confidence            47899999999999998 4333 456677899999999999999999999998888 68999999999999999999999


Q ss_pred             cCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHH
Q 006197          511 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  587 (657)
Q Consensus       511 R~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (657)
                      |.+|+|++ +|++|+|.+||+.|.+||+|.+|+|++.++.   +.+++++++.++..        .        .     
T Consensus       433 R~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~-----  490 (537)
T PLN02246        433 RLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSE--------I--------T-----  490 (537)
T ss_pred             cccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCC--------C--------C-----
Confidence            99999997 7999999999999999999999999986644   46788888775420        0        0     


Q ss_pred             HHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          588 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       588 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                         .++|+++++ ..|+.|++|..+.++++.      |+|++||++|++|++++.
T Consensus       491 ---~~~l~~~l~-~~l~~~~~p~~i~~~~~~------P~t~~GKi~r~~L~~~~~  535 (537)
T PLN02246        491 ---EDEIKQFVA-KQVVFYKRIHKVFFVDSI------PKAPSGKILRKDLRAKLA  535 (537)
T ss_pred             ---HHHHHHHHH-hhCcCccccceEEEeccC------CCCCcchhhHHHHHHHHh
Confidence               123444443 689999999999987654      999999999999998875

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.5e-62  Score=543.49  Aligned_cols=513  Identities=21%  Similarity=0.270  Sum_probs=399.2

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      .+.|+.++|++.++.+|+++|++..    +     +.+||.||.++++++|++|.+ .|+++||+|+++++|++++++++
T Consensus        22 ~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~   92 (562)
T PRK05677         22 EYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAV   92 (562)
T ss_pred             ccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence            3458999999999999999999863    3     589999999999999999997 59999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCc--H-HHHHHHh----
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--A-EQKEMAV----  191 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~~~~~----  191 (657)
                      |||+++|++++|++|..+.+++.++++.++++++|++......+.+....  ...+.++..+...  . .......    
T Consensus        93 la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
T PRK05677         93 FGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK--TGVKHVIVTEVADMLPPLKRLLINAVVK  170 (562)
T ss_pred             HHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc--cCcceeEEecccccccchhhhhcccchh
Confidence            99999999999999999999999999999999999987665433222111  1223333221110  0 0000000    


Q ss_pred             -------h-CCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCC
Q 006197          192 -------Q-TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (657)
Q Consensus       192 -------~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (657)
                             . .......+.+.+..............++++++++|||||||.||+|+++|+++..........+.   ..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~~~  247 (562)
T PRK05677        171 HVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG---SNL  247 (562)
T ss_pred             hccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc---cCC
Confidence                   0 00112234444433322222223446799999999999999999999999999887665444331   123


Q ss_pred             C-CCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhch
Q 006197          264 T-VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (657)
Q Consensus       264 ~-~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~  339 (657)
                      . ..+++++.+|++|.+++.. .+..+..|++.++.+.  ++..+++.|+++++|+++++|+++..+.....        
T Consensus       248 ~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------  319 (562)
T PRK05677        248 NEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA--------  319 (562)
T ss_pred             CCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc--------
Confidence            3 3478899999999999865 4556778887776653  78899999999999999999999988764210        


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCC
Q 006197          340 LRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG  419 (657)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~  419 (657)
                                                ....++        +++|.+++||+++++++.+.|.+.+++++++.||+||++.
T Consensus       320 --------------------------~~~~~~--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~  365 (562)
T PRK05677        320 --------------------------FRKLDF--------SALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSP  365 (562)
T ss_pred             --------------------------cccCCh--------hhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCc
Confidence                                      000011        3899999999999999999999988999999999999987


Q ss_pred             ccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceE
Q 006197          420 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG  498 (657)
Q Consensus       420 ~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~  498 (657)
                      .++...... ...+++|.|+++++++|+| +++.  +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|
T Consensus       366 ~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg  441 (562)
T PRK05677        366 VVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDGN--ELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIA  441 (562)
T ss_pred             ceeecCccC-CCCCccCccCCCCEEEEEC-CCCC--CCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceE
Confidence            766554432 2347899999999999998 6654  45667899999999999999999999999988 58999999999


Q ss_pred             EEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCc
Q 006197          499 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  575 (657)
Q Consensus       499 ~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  575 (657)
                      ++|++|.+++.||.+|+|++ +|.+|+|.+||+.|.+||+|.+++|++.++.   +.+++++++.++.        ..  
T Consensus       442 ~~~~~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~--------~~--  510 (562)
T PRK05677        442 LIQEDGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGE--------TL--  510 (562)
T ss_pred             EECCCCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCC--------CC--
Confidence            99999999999999999997 6999999999999999999999999997654   4777888766432        00  


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          576 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                            +.        +.+.++++ ..|+.|++|..|++++..      |+|++||++|++|++++.++
T Consensus       511 ------~~--------~~l~~~~~-~~l~~~~~P~~i~~v~~i------P~t~sGKi~r~~L~~~~~~~  558 (562)
T PRK05677        511 ------TK--------EQVMEHMR-ANLTGYKVPKAVEFRDEL------PTTNVGKILRRELRDEELKK  558 (562)
T ss_pred             ------CH--------HHHHHHHH-HhhhhccCCcEEEEeccC------CCCCcccccHHHHHHHHHHh
Confidence                  11        23334443 679999999999997664      99999999999999877553

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-62  Score=541.52  Aligned_cols=490  Identities=20%  Similarity=0.189  Sum_probs=394.5

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      .++.++|.++++++|+++|+++.   +      +++||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~  113 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA  113 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence            57999999999999999999864   2      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006197          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (657)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (657)
                      +++|++++|+++.++.+++.++++.++++++|++......+..... ..+....++...+...            ...++
T Consensus       114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~  180 (537)
T PRK13382        114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALA-DCPQATRIVAWTDEDH------------DLTVE  180 (537)
T ss_pred             HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHh-hccccceEEEecCCcc------------cccHH
Confidence            9999999999999999999999999999999999876554432211 1122223333322110            11333


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 006197          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (657)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (657)
                      .+......   ......+++.++++|||||||.||+|.++|+++..........+     .+..+++++..+|++|.+++
T Consensus       181 ~~~~~~~~---~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~  252 (537)
T PRK13382        181 VLIAAHAG---QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF  252 (537)
T ss_pred             HHhhccCc---CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence            33332211   11123467889999999999999999999998887776655554     67789999999999999998


Q ss_pred             HHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCC
Q 006197          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQR  360 (657)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (657)
                      ...+.++..|+++++... ++..+++.|+++++|++.++|+++..|.+.....                           
T Consensus       253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------------  305 (537)
T PRK13382        253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV---------------------------  305 (537)
T ss_pred             HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchh---------------------------
Confidence            778888999999888765 8999999999999999999999999886421100                           


Q ss_pred             CcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCcc
Q 006197          361 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  440 (657)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~  440 (657)
                           .+..        .++++|.+++||+++++++.+.|.+.++.++++.||+||++.+++.+........+++|.|++
T Consensus       306 -----~~~~--------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~  372 (537)
T PRK13382        306 -----RNRY--------SGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAE  372 (537)
T ss_pred             -----cccC--------CccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCc
Confidence                 0000        113899999999999999999999989989999999999998766554333344589999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCC
Q 006197          441 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ  520 (657)
Q Consensus       441 ~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~  520 (657)
                      +++++|+| +++.  +++.|+.|||+++|++++.||+  ++.+. .+.+|||+|||+++++++|++++.||.+|+|+. +
T Consensus       373 ~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~-~  445 (537)
T PRK13382        373 GTEIRILD-QDFR--EVPTGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMIVS-G  445 (537)
T ss_pred             CcEEEEEC-CCCC--CCCCCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCCcEEEeccccceeEE-C
Confidence            99999999 6654  4556789999999999999998  33343 356899999999999999999999999999996 8


Q ss_pred             ceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHH
Q 006197          521 GEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  597 (657)
Q Consensus       521 G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  597 (657)
                      |++|++.+||+.|.+||+|.+|+|++.++.   +.++++|++.++..        .        .        .++++++
T Consensus       446 G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~--------~--------~--------~~~l~~~  501 (537)
T PRK13382        446 GENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGAS--------A--------T--------PETLKQH  501 (537)
T ss_pred             CEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCC--------C--------C--------HHHHHHH
Confidence            999999999999999999999999997654   46888888775420        0        0        1234444


Q ss_pred             HHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197          598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  639 (657)
Q Consensus       598 ~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~  639 (657)
                      ++ ..|+.|++|..+.++++.      |+|++||++|++|++
T Consensus       502 l~-~~l~~~~~P~~i~~v~~l------P~t~~gK~~r~~L~~  536 (537)
T PRK13382        502 VR-DNLANYKVPRDIVVLDEL------PRGATGKILRRELQA  536 (537)
T ss_pred             HH-HhccCCCCCcEEEEeccC------CCCCCCCCcHHhhCC
Confidence            43 689999999999997654      899999999999864

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.9e-62  Score=544.96  Aligned_cols=517  Identities=25%  Similarity=0.330  Sum_probs=409.5

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..++.++|+++++++|+++|+.+.    +     +.+||.||.+.++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA  101 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFF----G-----ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA  101 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence            458999999999999999999874    3     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcH---HHHH---------
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA---EQKE---------  188 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~---------  188 (657)
                      |+++|++++|++|.++.+++.+++..++++++|+++.....+.+....  .....++..+....   ....         
T Consensus       102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  179 (573)
T PRK05605        102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPAL  179 (573)
T ss_pred             HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccc
Confidence            999999999999999999999999999999999988765544322111  12223332221100   0000         


Q ss_pred             -----HHhhCCcceeeHHHHHhcCccC---CccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhccccc
Q 006197          189 -----MAVQTGIKPYSWDEFLHLGKVN---EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE  260 (657)
Q Consensus       189 -----~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~  260 (657)
                           ...........|.++.......   .........+++++++|||||||.||+|.+||+++...+......+..  
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--  257 (573)
T PRK05605        180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPG--  257 (573)
T ss_pred             cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccc--
Confidence                 0000011234566655432111   012223467899999999999999999999999998877654332210  


Q ss_pred             CCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006197          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (657)
Q Consensus       261 ~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~  338 (657)
                       ....++++++.+|++|.+++.. ...++..|+++++.+. ++..+++.++++++|++.++|.+++.|.+......    
T Consensus       258 -~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~----  332 (573)
T PRK05605        258 -LGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG----  332 (573)
T ss_pred             -cCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC----
Confidence             1234789999999999999875 4557899999988775 89999999999999999999999998875322110    


Q ss_pred             hHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCC
Q 006197          339 PLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC  418 (657)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~  418 (657)
                                                    .++        +++|.+++||+++++.+.+.+.+.++.++++.||+||++
T Consensus       333 ------------------------------~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~  374 (573)
T PRK05605        333 ------------------------------VDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETS  374 (573)
T ss_pred             ------------------------------CCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhc
Confidence                                          001        389999999999999999999988899999999999999


Q ss_pred             CccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceE
Q 006197          419 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG  498 (657)
Q Consensus       419 ~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~  498 (657)
                      ++++.+........+++|.|++++.++|+| +++...+++.++.|||+++|+.++.||++++..+.+.|.+|||+|||+|
T Consensus       375 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~  453 (573)
T PRK05605        375 PIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVV  453 (573)
T ss_pred             hhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEE
Confidence            877766544444458999999999999999 5542355667789999999999999999999999999988999999999


Q ss_pred             EEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCc
Q 006197          499 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  575 (657)
Q Consensus       499 ~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  575 (657)
                      +++++|.+++.||.+|++++ +|.+|+|.+||+.+.+|+.|.+++|++.++.   +.+++++++..+..          .
T Consensus       454 ~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~----------~  522 (573)
T PRK05605        454 VMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAA----------L  522 (573)
T ss_pred             EEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCC----------C
Confidence            99999999999999999996 8999999999999999999999999986543   57888888776420          0


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006197          576 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  646 (657)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~  646 (657)
                            .        .+.|+++++ ..|+.+++|..+++++..      |+|.+||++|++|++++.+++.
T Consensus       523 ------~--------~~~l~~~~~-~~l~~~~~p~~i~~~~~i------P~t~~GKi~r~~L~~~~~~~~~  572 (573)
T PRK05605        523 ------D--------PEGLRAYCR-EHLTRYKVPRRFYHVDEL------PRDQLGKVRRREVREELLEKLG  572 (573)
T ss_pred             ------C--------HHHHHHHHH-HhCccccCCcEEEEeccC------CCCCcccccHHHHHHHHHHHhc
Confidence                  1        123444443 678999999999987654      9999999999999999877653

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=6.1e-62  Score=550.08  Aligned_cols=525  Identities=18%  Similarity=0.152  Sum_probs=392.5

Q ss_pred             CCCCCcCcHHH-HHHHHHHcCCCCCceeeecccCCC--CCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch
Q 006197           36 SVDSDLNTAWD-IFSMSVQKYPGNRMLGWRPFVDGK--FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (657)
Q Consensus        36 ~~~~~~~~i~~-~l~~~a~~~p~~~a~~~~~~~d~~--~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~  112 (657)
                      +.+....|+.+ +|+++++++|+++|+++.   +..  ++.++++||+||.++++++|++|++.|+++||+|+++++|++
T Consensus       168 wf~g~~ln~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~  244 (728)
T PLN03052        168 WLPGAVLNVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNV  244 (728)
T ss_pred             ECCCCEeEHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH
Confidence            56666556554 666666678999999986   321  234679999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhh-----hccccccccCceEEEEecCCcHHHH
Q 006197          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL-----LSPDCRSAQRLRVMVCFTSLTAEQK  187 (657)
Q Consensus       113 e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~  187 (657)
                      ++++++|||+++|++++|++|.++.+++.++++.++++++|+++.....-     .+.+.....  ..++++........
T Consensus       245 e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~~  322 (728)
T PLN03052        245 HAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSVR  322 (728)
T ss_pred             HHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCccc
Confidence            99999999999999999999999999999999999999999987543100     000000001  11222221110000


Q ss_pred             HHHhhCCcceeeHHHHHhcCcc----CCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCC
Q 006197          188 EMAVQTGIKPYSWDEFLHLGKV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (657)
Q Consensus       188 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (657)
                         ........+|.+++.....    .........++++++|+|||||||.||||+++|.+++..+......+     ++
T Consensus       323 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l  394 (728)
T PLN03052        323 ---VKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DI  394 (728)
T ss_pred             ---cccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CC
Confidence               0000112356766543211    01111223568999999999999999999999998877655544334     78


Q ss_pred             CCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006197          264 TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (657)
Q Consensus       264 ~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~  341 (657)
                      .++|++++..|+.|+++....+.+|..|++++++++  ++..+++.++++++|++.++|+++..|.+...          
T Consensus       395 ~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~----------  464 (728)
T PLN03052        395 RKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC----------  464 (728)
T ss_pred             CCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCC----------
Confidence            899999999999999998767788999999999876  55789999999999999999999988754210          


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC-CceeeeccCCCCCCc
Q 006197          342 RRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGP  420 (657)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~  420 (657)
                                              .+..++        ++||.++++|++++++...++.+.++ .++.+.||+||+++.
T Consensus       465 ------------------------~~~~dl--------ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~  512 (728)
T PLN03052        465 ------------------------MAGLDW--------SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGG  512 (728)
T ss_pred             ------------------------cccCCh--------hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcc
Confidence                                    011122        48999999999999999888877665 579999999999875


Q ss_pred             cccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCC--cccccCCCchhhhcccc-----CC--c
Q 006197          421 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT--LFSGYYKNPDLTRESII-----DG--W  491 (657)
Q Consensus       421 ~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~--~~~gy~~~~~~~~~~~~-----~g--~  491 (657)
                      +...........+++|.|.+|++++|+| +++..++.+..+.|||+++++.  ...+|+++. ....-|.     .|  |
T Consensus       513 ~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~  590 (728)
T PLN03052        513 FVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKIL  590 (728)
T ss_pred             cccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEE
Confidence            5433322233458899999999999999 7776554432246999998643  234566653 2222221     23  8


Q ss_pred             cccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHh-cCcccceEEEEecCCC----CeEEEEEecC--hhhH
Q 006197          492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC-VAPIIEDIWVYGDSLK----SMLVAVVVPC--EEDT  564 (657)
Q Consensus       492 ~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~-~~~~V~~~~vv~~~~~----~~~~a~v~~~--~~~~  564 (657)
                      |+|||++++|++|.++++||+||+|++ +|++|.+.|||++|. .||.|.|++|++.+++    +.++++|++.  ++. 
T Consensus       591 ~~tGDl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~-  668 (728)
T PLN03052        591 RRHGDIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGS-  668 (728)
T ss_pred             EecCceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCC-
Confidence            999999999999999999999999997 899999999999994 8999999999997653    4789999987  321 


Q ss_pred             HHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          565 KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                             ..        +..    .+++.+++.++ +.|+++.+|+.|+++++.      |+|.+||++|+.|++.+.+.
T Consensus       669 -------~~--------~~~----~L~~~i~~~i~-~~l~~~~~p~~i~~v~~l------P~T~sGKi~Rr~Lr~~~~~~  722 (728)
T PLN03052        669 -------NP--------DLN----ELKKIFNSAIQ-KKLNPLFKVSAVVIVPSF------PRTASNKVMRRVLRQQLAQE  722 (728)
T ss_pred             -------CC--------CHH----HHHHHHHHHHH-hhcCCccCCCEEEEcCCC------CCCCchHHHHHHHHHHHHhh
Confidence                   00        112    34444555554 678899999999987654      99999999999999988765


Q ss_pred             H
Q 006197          645 I  645 (657)
Q Consensus       645 i  645 (657)
                      .
T Consensus       723 ~  723 (728)
T PLN03052        723 L  723 (728)
T ss_pred             h
Confidence            4

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.5e-62  Score=541.82  Aligned_cols=513  Identities=24%  Similarity=0.286  Sum_probs=409.6

Q ss_pred             CCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHH
Q 006197           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVE  116 (657)
Q Consensus        38 ~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-G~~~gd~V~i~~~n~~e~~~  116 (657)
                      +.+..++.++|.++++++|+++|+++.   +      +++||.||.+++.++|.+|.+. |+++||+|+++++|++++++
T Consensus         6 ~~~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~   76 (546)
T PRK08314          6 TLPETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVI   76 (546)
T ss_pred             CCCCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHH
Confidence            344668999999999999999999875   3      5799999999999999999999 99999999999999999999


Q ss_pred             HHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcH--H-----HHHH
Q 006197          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--E-----QKEM  189 (657)
Q Consensus       117 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-----~~~~  189 (657)
                      +++||+++|++++|+++..+.+++.++++.+++++++++......+.......  ..+.++.......  .     ...+
T Consensus        77 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  154 (546)
T PRK08314         77 AYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAW  154 (546)
T ss_pred             HHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCcccc
Confidence            99999999999999999999999999999999999999988766554322111  2222322211000  0     0000


Q ss_pred             H-------hhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCC
Q 006197          190 A-------VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK  262 (657)
Q Consensus       190 ~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~  262 (657)
                      .       ...+.....|++.....  .........++++++++|||||||.||+|.+||++++.++......+     .
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~  227 (546)
T PRK08314        155 LRAEPPLQALAPGGVVAWKEALAAG--LAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----N  227 (546)
T ss_pred             cccccccccccccccccHHHHhccc--CCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----C
Confidence            0       00011233455554432  11223345678999999999999999999999999999888766655     7


Q ss_pred             CCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 006197          263 MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (657)
Q Consensus       263 ~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~  340 (657)
                      +..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+.+.++++++|++.++|.++..+.....         
T Consensus       228 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~---------  298 (546)
T PRK08314        228 STPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG---------  298 (546)
T ss_pred             CCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC---------
Confidence            889999999999999999865 5678999999999876 88999999999999999999999887753210         


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCc
Q 006197          341 RRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP  420 (657)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~  420 (657)
                                               .+..++        +++|.+++||+++++++.+++.+.++.++++.||+||++..
T Consensus       299 -------------------------~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  345 (546)
T PRK08314        299 -------------------------LAERDL--------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQ  345 (546)
T ss_pred             -------------------------ccccCc--------hhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccc
Confidence                                     011111        37899999999999999999999889999999999999887


Q ss_pred             cccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc--C--CccccCc
Q 006197          421 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGD  496 (657)
Q Consensus       421 ~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~--~--g~~~TGD  496 (657)
                      ......... ..+++|.|+++++++++| ++.. .+++.++.|||+++|++++.||+++++.+.+.|.  +  +||+|||
T Consensus       346 ~~~~~~~~~-~~~~~G~~~~g~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGD  422 (546)
T PRK08314        346 THSNPPDRP-KLQCLGIPTFGVDARVID-PETL-EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGD  422 (546)
T ss_pred             eecCCCcCC-CCCccCcccCCeEEEEEe-CCCC-cCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCC
Confidence            665544332 347899999999999998 4332 4555667999999999999999999999888772  3  5999999


Q ss_pred             eEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCC
Q 006197          497 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGH  573 (657)
Q Consensus       497 l~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~  573 (657)
                      +|+++.+|.+++.||.+|+|++ +|.+|+|.+||++|.++|+|.+++|++.++.   +.++++++++++...        
T Consensus       423 l~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~--------  493 (546)
T PRK08314        423 LGRMDEEGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARG--------  493 (546)
T ss_pred             EEEEcCCCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCC--------
Confidence            9999999999999999999997 7999999999999999999999999987654   578899988764310        


Q ss_pred             CccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          574 AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                        .    ..        .+.++++++ +.|+.|++|..+.++++.      |+|.+||++|++|++..+.
T Consensus       494 --~----~~--------~~~l~~~~~-~~l~~~~~P~~~~~v~~i------P~t~~GKv~r~~L~~~~~~  542 (546)
T PRK08314        494 --K----TT--------EEEIIAWAR-EHMAAYKYPRIVEFVDSL------PKSGSGKILWRQLQEQEKA  542 (546)
T ss_pred             --C----CC--------HHHHHHHHH-HhcccCCCCcEEEEecCC------CCCCccceeHHHHHHHHhh
Confidence              0    00        133445554 689999999999998664      9999999999999876554

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.2e-62  Score=543.76  Aligned_cols=518  Identities=21%  Similarity=0.261  Sum_probs=408.9

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ..|+.++|+.++..+|+++|+++.   + .  .++.+||.||.+++.++|.+|++ .|+++||+|+++++|+++++++++
T Consensus         9 ~~~~~~~l~~~a~~~~~~~a~~~~---~-~--~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~l   82 (576)
T PRK05620          9 PLSLTRILEYGSTVHGDTTVTTWG---G-A--EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLF   82 (576)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---C-C--ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            358999999999999999999874   2 1  24789999999999999999996 799999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|+++++++|..+.+++.++++.++++++|++....+.+.+... .....+.++..+..................+
T Consensus        83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  161 (576)
T PRK05620         83 AVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILK-ECPCVRAVVFIGPSDADSAAAHMPEGIKVYS  161 (576)
T ss_pred             HHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHh-hCccccEEEEecCcccccchhcccccccccc
Confidence            999999999999999999999999999999999999876665433222 2234444554443211110001111223446


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhh--hhcccccCCCCCCcEEEEecChhH
Q 006197          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD--LFLDQFEDKMTVDDVYLSFLPLAH  277 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~--~~~~~~~~~~~~~d~~l~~~pl~~  277 (657)
                      |.++.+.. ..........++++++++|||||||.||+|+++|+++........  ..+     .+..++++++.+|++|
T Consensus       162 ~~~l~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h  235 (576)
T PRK05620        162 YEALLDGR-STVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCCVPIYH  235 (576)
T ss_pred             HHHHhhcC-CCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEeCChHH
Confidence            77777543 222222345678999999999999999999999999866544322  123     6788999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q 006197          278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM  355 (657)
Q Consensus       278 ~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (657)
                      .+++...+.++..|+++++...  ++..+++.++++++|+++++|.++..+.........                    
T Consensus       236 ~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------  295 (576)
T PRK05620        236 VLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP--------------------  295 (576)
T ss_pred             hhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc--------------------
Confidence            9998888888999999988753  889999999999999999999999887643211000                    


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC-------
Q 006197          356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-------  428 (657)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-------  428 (657)
                                            ...++|.+++||+.+++.+.+.|.+.++.++++.||+||++..++......       
T Consensus       296 ----------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  353 (576)
T PRK05620        296 ----------------------ERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEAR  353 (576)
T ss_pred             ----------------------ccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccccccc
Confidence                                  003799999999999999999999888999999999999987665443221       


Q ss_pred             ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhh----------------hccc-cCCc
Q 006197          429 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT----------------RESI-IDGW  491 (657)
Q Consensus       429 ~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~----------------~~~~-~~g~  491 (657)
                      .....++|++.+++++++++ + +...+.+.+..|||+++|+.++.||+++++.+                ...| .+||
T Consensus       354 ~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~  431 (576)
T PRK05620        354 WAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGW  431 (576)
T ss_pred             cccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCc
Confidence            11235789999999999998 5 54444445678999999999999999998877                2223 4789


Q ss_pred             cccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHH
Q 006197          492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWA  568 (657)
Q Consensus       492 ~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~  568 (657)
                      |+|||+++++++|.+++.||.+|+|+. +|.+|++.+||+.|.+||.|.+|+|++.++.   +.+++++++.++..    
T Consensus       432 ~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~----  506 (576)
T PRK05620        432 LRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIE----  506 (576)
T ss_pred             EecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCC----
Confidence            999999999999999999999999995 8999999999999999999999999997654   46788888766420    


Q ss_pred             HHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          569 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                                   ...    ...+.|++.++ ++||.|++|+.|+++++.      |+|.+||++|++|++++++.
T Consensus       507 -------------~~~----~~~~~l~~~l~-~~L~~~~~P~~i~~v~~~------P~t~~GKv~r~~L~~~~~~~  558 (576)
T PRK05620        507 -------------PTR----ETAERLRDQLR-DRLPNWMLPEYWTFVDEI------DKTSVGKFDKKDLRQHLADG  558 (576)
T ss_pred             -------------ccc----ccHHHHHHHHH-hhCccccCCeEEEEeccC------CCCCcccCcHHHHHHHHhcC
Confidence                         000    01234445554 689999999999997664      99999999999999999863

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-62  Score=535.19  Aligned_cols=487  Identities=22%  Similarity=0.255  Sum_probs=398.3

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..+.+.|+++|+++||++|+++.    +     +.+||.||.++++++|++|++ .|+++||+|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la   72 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA   72 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            56889999999999999999863    3     689999999999999999985 6999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|+++.++.+++..+++.+++++++++......+.+... . .....++.+.+                  +
T Consensus        73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~------------------~  132 (496)
T PRK06839         73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQK-V-SYVQRVISITS------------------L  132 (496)
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhh-c-cCcceEEEecc------------------h
Confidence            99999999999999999999999999999999999876654422111 1 11223333322                  2


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (657)
                      .++....   ........++++++++|||||||.||+|.++|.++..........+     ++..+|++++.+|++|.++
T Consensus       133 ~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  204 (496)
T PRK06839        133 KEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGG  204 (496)
T ss_pred             HhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhh
Confidence            2222111   1122334568999999999999999999999999877665544444     6788999999999999998


Q ss_pred             HHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCC
Q 006197          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK  358 (657)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (657)
                      +.. .+.++..|+++++.+. ++..+++.++++++|++.++|.+++.+.+.....                         
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------  259 (496)
T PRK06839        205 IGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE-------------------------  259 (496)
T ss_pred             HHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------
Confidence            875 4567899999888765 8999999999999999999999999886532100                         


Q ss_pred             CCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCC-CccccCccCc
Q 006197          359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGTAGP  437 (657)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~  437 (657)
                                       ...++++|.+++||+++++++.+.+.+. |.++.+.||+||++..++..... .....+++|.
T Consensus       260 -----------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~  321 (496)
T PRK06839        260 -----------------TTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGK  321 (496)
T ss_pred             -----------------cCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCCcc
Confidence                             0011489999999999999999999886 89999999999999765544332 2334589999


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceee
Q 006197          438 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  517 (657)
Q Consensus       438 ~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~  517 (657)
                      |+++++++|++ +++..  ++.|+.|||+|+|+.++.||+++++.+...+.+|||+|||+++++++|.+++.||.+|+|+
T Consensus       322 p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~  398 (496)
T PRK06839        322 PVLFCDYELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKEMII  398 (496)
T ss_pred             cCCCceEEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccceEE
Confidence            99999999999 66654  5677899999999999999999999998888999999999999999999999999999999


Q ss_pred             cCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHH
Q 006197          518 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  594 (657)
Q Consensus       518 ~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  594 (657)
                      . +|.+|+|.+||+.|.++|+|.+|+|++.++.   +.++++|+++++..        .        .        .++|
T Consensus       399 ~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------~--------~--------~~~l  453 (496)
T PRK06839        399 S-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSV--------L--------I--------EKDV  453 (496)
T ss_pred             E-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC--------C--------C--------HHHH
Confidence            6 8999999999999999999999999997654   37888988876420        0        0        1234


Q ss_pred             HHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          595 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       595 ~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                      +++++ ..|+.+++|..++++++.      |+|++||++|++|+++.++
T Consensus       454 ~~~~~-~~l~~~~~P~~~~~v~~~------P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        454 IEHCR-LFLAKYKIPKEIVFLKEL------PKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             HHHHH-hhCcCCCCCcEEEEeccC------CCCccccccHHHHHHHhhc
Confidence            44443 679999999999987664      9999999999999987653

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-62  Score=540.77  Aligned_cols=507  Identities=23%  Similarity=0.290  Sum_probs=395.1

Q ss_pred             CCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006197           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (657)
Q Consensus        38 ~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~  117 (657)
                      .+...++.++|+++++++|+++|+++.   ++.    +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~   84 (534)
T PRK05852         12 SDFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVA   84 (534)
T ss_pred             hhhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHH
Confidence            356678999999999999999999875   332    5799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcce
Q 006197          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (657)
Q Consensus       118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (657)
                      +|||+++|++++++++.++.+++.++|+.++++++|++............   ......+.+......      ......
T Consensus        85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~  155 (534)
T PRK05852         85 LLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGP------SGGTLS  155 (534)
T ss_pred             HHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeecccccc------cccccc
Confidence            99999999999999999999999999999999999988653321111000   001111111110000      000000


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006197          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (657)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~  277 (657)
                      ..+......  ...........++.++++|||||||.||+|+++|+++...+......+     .+..+|++++.+|++|
T Consensus       156 ~~~~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~  228 (534)
T PRK05852        156 VHLDAATEP--TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYH  228 (534)
T ss_pred             cccccccCC--CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcch
Confidence            000000000  000111122356789999999999999999999999998888776666     7889999999999999


Q ss_pred             HHHHHH-HHHHHhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197          278 ILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM  353 (657)
Q Consensus       278 ~~g~~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (657)
                      .+++.. .+.++..|+++++...   ++..+++.++++++|+++++|+++..|.+.......                  
T Consensus       229 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------  290 (534)
T PRK05852        229 GHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPS------------------  290 (534)
T ss_pred             hHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccc------------------
Confidence            999876 5556888888887542   788999999999999999999999988754221100                  


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCC------
Q 006197          354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD------  427 (657)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~------  427 (657)
                                            ....+++|.+.++|+++++.+.+.+.+.++.++++.||+||++..++.....      
T Consensus       291 ----------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~  348 (534)
T PRK05852        291 ----------------------GRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTE  348 (534)
T ss_pred             ----------------------cccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCcccccccc
Confidence                                  0011489999999999999999999998999999999999998766643321      


Q ss_pred             -CccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcE
Q 006197          428 -EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  506 (657)
Q Consensus       428 -~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l  506 (657)
                       .....+..|. .++++++++| +++.  +++.++.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++|+||++
T Consensus       349 ~~~~~~g~~g~-~~g~~~~i~d-~~g~--~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~l  424 (534)
T PRK05852        349 NPVVSTGLVGR-STGAQIRIVG-SDGL--PLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDL  424 (534)
T ss_pred             CcccccccCCC-CCCCeEEEEC-CCCC--CCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCCcE
Confidence             1112234444 6899999998 6664  455678999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhcc
Q 006197          507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  583 (657)
Q Consensus       507 ~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (657)
                      ++.||.+|+|+. +|.+|+|.+||++|.++|+|.+|+|++.++.   +.++++|++.+...        .        . 
T Consensus       425 ~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~--------~--------~-  486 (534)
T PRK05852        425 SIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAP--------P--------T-  486 (534)
T ss_pred             EEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCC--------C--------C-
Confidence            999999999996 8999999999999999999999999997754   46888888754320        0        1 


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          584 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       584 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                             .++|.+.++ ..||.|++|+.+.+++..      |+|++||++|++|+++|..
T Consensus       487 -------~~~i~~~~~-~~l~~~~~P~~i~~v~~i------P~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        487 -------AEELVQFCR-ERLAAFEIPASFQEASGL------PHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             -------HHHHHHHHH-HhcccccCCeEEEEhhhc------CCCCCccccHHHHHHHhcc
Confidence                   123344443 579999999999997664      9999999999999998854

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=1.5e-61  Score=535.50  Aligned_cols=501  Identities=21%  Similarity=0.230  Sum_probs=403.4

Q ss_pred             CCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006197           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (657)
Q Consensus        36 ~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~  115 (657)
                      ..|...+++.++|+++++++|+++|+++.   +      +++||.||.+++.++|.+|.+.|+++|++|+++++|+++++
T Consensus        15 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~   85 (542)
T PRK06155         15 PLPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFL   85 (542)
T ss_pred             cCCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHH
Confidence            56667888999999999999999999874   3      57999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCc
Q 006197          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (657)
Q Consensus       116 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (657)
                      +++|||+++|++++|+++.++.+++..+++.+++++++++.+....+...... ....+.++.++.....      ..  
T Consensus        86 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~--  156 (542)
T PRK06155         86 DVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPG-DLPLPAVWLLDAPASV------SV--  156 (542)
T ss_pred             HHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccc-ccCcceEEEecCcccc------cc--
Confidence            99999999999999999999999999999999999999998877655332211 1233445554432210      00  


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh
Q 006197          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (657)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  275 (657)
                       ...+..................++++++++|||||||.||+|+++|+++..........+     .+.+++++++.+|+
T Consensus       157 -~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl  230 (542)
T PRK06155        157 -PAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPL  230 (542)
T ss_pred             -ccccchhhhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCH
Confidence             001111000000111122334678999999999999999999999999988776665555     78899999999999


Q ss_pred             hHHHHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhh
Q 006197          276 AHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMN  354 (657)
Q Consensus       276 ~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (657)
                      +|.+++...+.++..|+++++.+. ++..++..|+++++|+++++|+++..|.+......                    
T Consensus       231 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------  290 (542)
T PRK06155        231 FHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARES--------------------  290 (542)
T ss_pred             HHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccc--------------------
Confidence            999998877888999999988776 89999999999999999999999887764211000                    


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCc
Q 006197          355 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT  434 (657)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~  434 (657)
                                            ...+++|.++.+|  +++.+.+.+.+.++.++++.||+||++..+.....  ....++
T Consensus       291 ----------------------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~~~~  344 (542)
T PRK06155        291 ----------------------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQRPGS  344 (542)
T ss_pred             ----------------------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCCCCC
Confidence                                  0114788877665  57888999998899999999999999987665432  234478


Q ss_pred             cCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccC---CcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEec
Q 006197          435 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR  511 (657)
Q Consensus       435 ~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~---~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR  511 (657)
                      +|.++++++++|++ +++.  +++.|+.|||+++|+   .++.||+++++.+...|.++||+|||+|+++++|.+++.||
T Consensus       345 vG~~~~~~~~~i~d-~~~~--~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i~GR  421 (542)
T PRK06155        345 MGRLAPGFEARVVD-EHDQ--ELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDR  421 (542)
T ss_pred             cCccCCCceEEEEC-CCCC--CCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEEEec
Confidence            99999999999998 5554  455668999999998   68999999999999889999999999999999999999999


Q ss_pred             CcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHH
Q 006197          512 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  588 (657)
Q Consensus       512 ~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (657)
                      .+|+|++ +|.+|+|.+||++|.+||+|.+|+|++.+++   +.+.+++++..+..          .      .      
T Consensus       422 ~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~----------~------~------  478 (542)
T PRK06155        422 IKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTA----------L------E------  478 (542)
T ss_pred             CCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCC----------C------C------
Confidence            9999996 8999999999999999999999999987653   46777777665320          0      0      


Q ss_pred             HHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006197          589 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  641 (657)
Q Consensus       589 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~  641 (657)
                        ..++++.++ ..++.|++|..|.++++.      |+|++||++|++|++++
T Consensus       479 --~~~~~~~~~-~~l~~~~~P~~i~~~~~i------P~t~~GKi~r~~l~~~~  522 (542)
T PRK06155        479 --PVALVRHCE-PRLAYFAVPRYVEFVAAL------PKTENGKVQKFVLREQG  522 (542)
T ss_pred             --HHHHHHHHH-hhCcCccCCcEEEEeccC------CCCcccceeHHHHHhhc
Confidence              123334443 679999999999987654      99999999999999876

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-61  Score=534.71  Aligned_cols=509  Identities=21%  Similarity=0.266  Sum_probs=403.2

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..++.++|++.++++|+++++.+.     ..++++++||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         9 ~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la   83 (539)
T PRK07008          9 PLLISSLIAHAARHAGDTEIVSRR-----VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYG   83 (539)
T ss_pred             CCCHHHHHHHHHhhCCCceEEEee-----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            357899999999999998888653     122357899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|++|..+.+++..+++.+++++++++.+..+.+.+.. ........++...+....     ........++
T Consensus        84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  157 (539)
T PRK07008         84 VSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALA-PQCPNVKGWVAMTDAAHL-----PAGSTPLLCY  157 (539)
T ss_pred             HHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHH-hhCCCceEEEEEccCCcc-----ccCCcccccH
Confidence            9999999999999999999999999999999999987665443322 122344454444332110     0011224456


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhh--hhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                      +++...... ........++++++++|||||||.||+|++||++++....  .+...+     ++..+|++++.+|++|.
T Consensus       158 ~~l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~  231 (539)
T PRK07008        158 ETLVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHV  231 (539)
T ss_pred             HHHhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHh
Confidence            666543321 1122345678899999999999999999999999875432  222233     67889999999999998


Q ss_pred             HHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197          279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG  356 (657)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (657)
                      +++...+.++..|+++++.+.  ++..+++.++++++|++.++|+++..+.+......                      
T Consensus       232 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------  289 (539)
T PRK07008        232 NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG----------------------  289 (539)
T ss_pred             hhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC----------------------
Confidence            887777778899999998754  88999999999999999999999998875322110                      


Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC--------
Q 006197          357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--------  428 (657)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~--------  428 (657)
                                  .        ..+++|.++++|+++++.+.+.+.+.++.++++.||+||++..++.+....        
T Consensus       290 ------------~--------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~  349 (539)
T PRK07008        290 ------------L--------RFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLD  349 (539)
T ss_pred             ------------C--------CcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCch
Confidence                        0        114899999999999999999999889999999999999997655432111        


Q ss_pred             --ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcE
Q 006197          429 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  506 (657)
Q Consensus       429 --~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l  506 (657)
                        .....++|.|+++++++|++ +++..++.+.++.|||+++|+.++.||++++.   ..+.+|||+|||++++|+||.+
T Consensus       350 ~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~dg~l  425 (539)
T PRK07008        350 EQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFM  425 (539)
T ss_pred             hhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcCCCcE
Confidence              11236889999999999999 66665555555689999999999999999873   3456899999999999999999


Q ss_pred             EEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhcc
Q 006197          507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  583 (657)
Q Consensus       507 ~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (657)
                      ++.||.+|+|+. +|.+|+|.+||+.+.++|.|.+++|++.++.   +.++++|+..++..        .        . 
T Consensus       426 ~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~-  487 (539)
T PRK07008        426 QITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAE--------V--------T-  487 (539)
T ss_pred             EEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCc--------c--------C-
Confidence            999999999996 8999999999999999999999999997753   46777777665320        0        1 


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          584 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       584 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                             .++++++++ ++++.|++|+.|.+++..      |+|++||++|++|++++++.
T Consensus       488 -------~~~l~~~~~-~~l~~~~~P~~i~~v~~l------P~t~sgKi~r~~l~~~~~~~  534 (539)
T PRK07008        488 -------REELLAFYE-GKVAKWWIPDDVVFVDAI------PHTATGKLQKLKLREQFRDY  534 (539)
T ss_pred             -------HHHHHHHHH-hhcccccCCeEEEEecCC------CCCCccceeHHHHHHHHHhh
Confidence                   123444444 679999999999997654      99999999999999988763

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.1e-61  Score=537.90  Aligned_cols=523  Identities=21%  Similarity=0.254  Sum_probs=392.6

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      .++.++|...++.+|+++|+++.    +     .++||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~   84 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIYG----K-----TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV   84 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEC----C-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            56899999999999999999874    2     58999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhcccccc-----ccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-----AQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (657)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (657)
                      +++|++++|+++..+.+++.++|+.++++++|++.+....+.+.....     .... .++.++......     .....
T Consensus        85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~  158 (579)
T PLN03102         85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNL-PVIFIHEIDFPK-----RPSSE  158 (579)
T ss_pred             HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCc-eEEEeccccccc-----CCccc
Confidence            999999999999999999999999999999999887665443221110     0111 233333211100     00011


Q ss_pred             eeeHHHHHhcCccCCcc----CCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEe
Q 006197          197 PYSWDEFLHLGKVNEME----ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (657)
Q Consensus       197 ~~~~~~l~~~~~~~~~~----~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (657)
                      ..++.++..........    .....++++++|+|||||||.||+|+++|+++..........+     .+...++++..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~  233 (579)
T PLN03102        159 ELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLWT  233 (579)
T ss_pred             ccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEec
Confidence            23455554432211111    1224568999999999999999999999999755443322222     46677899999


Q ss_pred             cChhHHHHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006197          273 LPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLA  351 (657)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (657)
                      +|++|..++...+.++..|++++++.. ++..+++.|+++++|++.++|+++..|.+......                 
T Consensus       234 ~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------  296 (579)
T PLN03102        234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL-----------------  296 (579)
T ss_pred             CChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc-----------------
Confidence            999999988777778888888887765 88899999999999999999999998865311000                 


Q ss_pred             HhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC---
Q 006197          352 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---  428 (657)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~---  428 (657)
                                               ...++++.+++||+++++.+.+++.+ +|.++++.||+||+++.++......   
T Consensus       297 -------------------------~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~~~  350 (579)
T PLN03102        297 -------------------------SPRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDEWN  350 (579)
T ss_pred             -------------------------CCcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccccc
Confidence                                     00026778999999999999998876 5899999999999987544321110   


Q ss_pred             ----------ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceE
Q 006197          429 ----------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG  498 (657)
Q Consensus       429 ----------~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~  498 (657)
                                ....+..+.++++  +.+++.+.+..++.+.++.|||+++|++++.||+++++.+.+.|.+|||+|||+|
T Consensus       351 ~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TGDlg  428 (579)
T PLN03102        351 RLPENQQMELKARQGVSILGLAD--VDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVG  428 (579)
T ss_pred             cCCcccccccccCCCcccccccc--eEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecCceE
Confidence                      0112333344444  4455522333333333468999999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCc
Q 006197          499 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  575 (657)
Q Consensus       499 ~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  575 (657)
                      ++|++|++++.||.+|+|++ +|++|+|.+||+.|.+||.|.+++|++.+++   +.++++|++.++....       ..
T Consensus       429 ~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~-------~~  500 (579)
T PLN03102        429 VIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTK-------ED  500 (579)
T ss_pred             EEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccc-------cc
Confidence            99999999999999999996 8999999999999999999999999998764   4788998887643110       00


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH-HHHHHHhh
Q 006197          576 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV-EIDQLYEK  651 (657)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~-~i~~ly~~  651 (657)
                      .+.+...       -..+++++++ ..||+|++|..+.++++.      |+|++||++|++|++++++ ..+.-|.+
T Consensus       501 ~~~~~~~-------~~~~l~~~~~-~~L~~~~~P~~i~~~~~~------P~t~~gKi~r~~L~~~~~~~~~~~~~~~  563 (579)
T PLN03102        501 RVDKLVT-------RERDLIEYCR-ENLPHFMCPRKVVFLQEL------PKNGNGKILKPKLRDIAKGLVVEDEDNV  563 (579)
T ss_pred             ccccccc-------cHHHHHHHHH-hhcccccCCeEEEEcccC------CCCCcccccHHHHHHHHHHhhhHHHHHH
Confidence            0000000       0134555554 679999999999987654      9999999999999999977 44455543

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-61  Score=530.55  Aligned_cols=475  Identities=19%  Similarity=0.202  Sum_probs=389.9

Q ss_pred             cHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 006197           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (657)
Q Consensus        43 ~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~  122 (657)
                      ++.+.|.++++++|+++|+.+.   +      .++||.||.++++++|.+|.+.|. +|++|+|+++|++++++++|||+
T Consensus         2 ~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~   71 (487)
T PRK07638          2 GITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAA   71 (487)
T ss_pred             ChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence            6789999999999999999864   3      589999999999999999999984 89999999999999999999999


Q ss_pred             hcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHH
Q 006197          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (657)
Q Consensus       123 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (657)
                      ++|++++|+++..+.+++..+++.+++++++++......+...      . ..++..+.                  +.+
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~-~~~~~~~~------------------~~~  126 (487)
T PRK07638         72 MAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------E-GRVIEIDE------------------WKR  126 (487)
T ss_pred             HcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------c-ceEEEehh------------------hhh
Confidence            9999999999999999999999999999999998654433210      0 11222211                  111


Q ss_pred             HHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH
Q 006197          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (657)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  282 (657)
                      ..... ...........+++++++|||||||.||+|+++|+++...+......+     ++.++|+++...|++|..++.
T Consensus       127 ~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l~  200 (487)
T PRK07638        127 MIEKY-LPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFLY  200 (487)
T ss_pred             hhhhc-cccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHHH
Confidence            11111 001111122356789999999999999999999999998887766655     788999999999999988877


Q ss_pred             HHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCC
Q 006197          283 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQRE  361 (657)
Q Consensus       283 ~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (657)
                      ..+.+++.|+++++.+. ++..+++.++++++|++.++|+++..|.+...                              
T Consensus       201 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------  250 (487)
T PRK07638        201 GAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR------------------------------  250 (487)
T ss_pred             HHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC------------------------------
Confidence            77888999999998876 89999999999999999999999988864300                              


Q ss_pred             cchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCCccccCccCcCcc
Q 006197          362 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  440 (657)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~  440 (657)
                                      ...+.+.++++|+.+++.+.+++.+.+ +..+++.||+||++..+...........+++|.|++
T Consensus       251 ----------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~  314 (487)
T PRK07638        251 ----------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFH  314 (487)
T ss_pred             ----------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccC
Confidence                            012556678899999999999999887 788999999999998766554433445579999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCC
Q 006197          441 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ  520 (657)
Q Consensus       441 ~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~  520 (657)
                      +++++|+| +++.  +++.|+.|||+++|+.++.||++++..+.+.+.+|||+|||+|++|++|++++.||.+|+|++ +
T Consensus       315 ~~~~~i~d-~~g~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~-~  390 (487)
T PRK07638        315 NVQVRICN-EAGE--EVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILF-G  390 (487)
T ss_pred             CcEEEEEC-CCCC--CCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeEEe-C
Confidence            99999998 6654  456678999999999999999999988887778999999999999999999999999999997 8


Q ss_pred             ceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHH
Q 006197          521 GEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  597 (657)
Q Consensus       521 G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  597 (657)
                      |.+|+|.+||+.|.+||+|.+|+|++..+.   +.++++++...                    ..        +.+++.
T Consensus       391 G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~--------------------~~--------~~l~~~  442 (487)
T PRK07638        391 GINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSA--------------------TK--------QQLKSF  442 (487)
T ss_pred             CEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCC--------------------CH--------HHHHHH
Confidence            999999999999999999999999997754   46777776421                    11        223333


Q ss_pred             HHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       598 ~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                      ++ +.++.|++|+.++++++.      |+|++||++|++|++++++
T Consensus       443 ~~-~~l~~~~~p~~i~~v~~i------P~t~~GKv~r~~L~~~~~~  481 (487)
T PRK07638        443 CL-QRLSSFKIPKEWHFVDEI------PYTNSGKIARMEAKSWIEN  481 (487)
T ss_pred             HH-HHhhcccCCcEEEEeccc------CCCCcccccHHHHHHHHhc
Confidence            33 578899999999997664      9999999999999877654

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-61  Score=534.42  Aligned_cols=502  Identities=24%  Similarity=0.328  Sum_probs=411.8

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      ..+.++.++|...++.+|+++|+.+.    +     +++||+||.+.+.++|..|.+.|+++||+|+++++|++++++++
T Consensus         2 ~~~~~i~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~   72 (513)
T PRK07656          2 NEWMTLPELLARAARRFGDKEAYVFG----D-----QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA   72 (513)
T ss_pred             CccccHHHHHHHHHHHCCCCeEEEeC----C-----CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            34678999999999999999999874    3     58999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      +||+++|++++|+++..+.+.+..+++.+++++++++........... ........++........      .......
T Consensus        73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~  145 (513)
T PRK07656         73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDD------PHTEKMK  145 (513)
T ss_pred             HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCcccc------cCccccc
Confidence            999999999999999999999999999999999999987665443321 122334444443332110      0001223


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                      +|.++...... ........++++++++|||||||.||+|.++|.++...+......+     ++.+++++++.+|++|.
T Consensus       146 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  219 (513)
T PRK07656        146 TFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHV  219 (513)
T ss_pred             cHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHH
Confidence            56666654321 2233345778999999999999999999999999998888776666     78999999999999999


Q ss_pred             HHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG  356 (657)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (657)
                      +++.. .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+......                      
T Consensus       220 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------  277 (513)
T PRK07656        220 FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA----------------------  277 (513)
T ss_pred             HHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC----------------------
Confidence            99875 5667999999888765 89999999999999999999999998875321100                      


Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCC-ceeeeccCCCCCCccccccCCCccc--cC
Q 006197          357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCM--VG  433 (657)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~~~~~~--~~  433 (657)
                                          ...+++|.+++||+++++++.+.+.+.++. ++++.||+||++++.+.+.......  .+
T Consensus       278 --------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  337 (513)
T PRK07656        278 --------------------EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAG  337 (513)
T ss_pred             --------------------CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCC
Confidence                                011489999999999999999999998888 8999999999988877766544322  58


Q ss_pred             ccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc-CCccccCceEEEcCCCcEEEEecC
Q 006197          434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK  512 (657)
Q Consensus       434 ~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~-~g~~~TGDl~~~~~~G~l~i~GR~  512 (657)
                      ++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||++++..+...+. +|||+|||+|+++.+|.++++||.
T Consensus       338 ~vG~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~  414 (513)
T PRK07656        338 TIGTAIAGVENKIVN-ELGE--EVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRK  414 (513)
T ss_pred             CccccCCCcEEEEEC-CCCC--CCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecc
Confidence            999999999999998 6654  455678999999999999999999988888884 999999999999999999999999


Q ss_pred             cceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHH
Q 006197          513 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  589 (657)
Q Consensus       513 ~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (657)
                      +|+|++ +|.++++.+||+.|.++++|.+++|++.++.   +.++++|+.....        ..        .       
T Consensus       415 ~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~--------~-------  470 (513)
T PRK07656        415 KDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGA--------EL--------T-------  470 (513)
T ss_pred             cceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCC--------CC--------C-------
Confidence            999997 7999999999999999999999999986543   4678888876421        00        1       


Q ss_pred             HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197          590 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  639 (657)
Q Consensus       590 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~  639 (657)
                       .+++.++++ ..||.+++|..+++++..      |+|++||++|++|++
T Consensus       471 -~~~l~~~~~-~~l~~~~~p~~i~~v~~i------P~t~~gK~~r~~l~~  512 (513)
T PRK07656        471 -EEELIAYCR-EHLAKYKVPRSIEFLDEL------PKNATGKVLKRALRE  512 (513)
T ss_pred             -HHHHHHHHH-hhcccccCCCEEEEecCC------CCCCccceeHHHHhc
Confidence             123334443 689999999999997654      999999999999875

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-61  Score=534.69  Aligned_cols=508  Identities=28%  Similarity=0.347  Sum_probs=420.8

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      ....++.++|.++++.+|+++|+.+.   +      +.+||+||.+.++++|++|.+.|+++|++|+++++|++++++++
T Consensus         3 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~   73 (521)
T PRK06187          3 DYPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAY   73 (521)
T ss_pred             cccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            45678999999999999999999875   4      46999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      +||+++|++++++++..+.+++..+++.+++++++++.+..+.+.+.. ......+.++..++....      .......
T Consensus        74 la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~  146 (521)
T PRK06187         74 FAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAIL-PQLPTVRTVIVEGDGPAA------PLAPEVG  146 (521)
T ss_pred             HHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHh-hccCCccEEEEecCcccc------ccccccc
Confidence            999999999999999999999999999999999999988766553322 223344555555443210      0112234


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                      .+.+++..... .........+++++++|||||||.||+|.+||+++..........+     ++..+|++++.+|++|.
T Consensus       147 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~  220 (521)
T PRK06187        147 EYEELLAAASD-TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHV  220 (521)
T ss_pred             cHHHHhhcCCc-cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHH
Confidence            55555544321 2223345678899999999999999999999999998888776655     78999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCC
Q 006197          279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGY  357 (657)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (657)
                      +++...+.++..|+++++++. ++..+++.++++++|+++++|+++..|.+.....                        
T Consensus       221 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~------------------------  276 (521)
T PRK06187        221 HAWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY------------------------  276 (521)
T ss_pred             hhHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC------------------------
Confidence            998887779999999998876 8999999999999999999999999887532210                        


Q ss_pred             CCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCc-----ccc
Q 006197          358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-----CMV  432 (657)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~-----~~~  432 (657)
                                .        ..++++|.+++||+++++.+.+.+.+.+++++++.||+||+++.+........     ...
T Consensus       277 ----------~--------~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  338 (521)
T PRK06187        277 ----------F--------VDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKR  338 (521)
T ss_pred             ----------c--------cCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccC
Confidence                      0        01148999999999999999999999889999999999999887776554333     245


Q ss_pred             CccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecC
Q 006197          433 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK  512 (657)
Q Consensus       433 ~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~  512 (657)
                      +++|.|+++++++|++ +++..++.+.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+++++++|.+++.||.
T Consensus       339 ~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~GR~  417 (521)
T PRK06187        339 RSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRI  417 (521)
T ss_pred             CccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEeecc
Confidence            8999999999999999 776655544478999999999999999999999999999999999999999999999999999


Q ss_pred             cceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHH
Q 006197          513 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  589 (657)
Q Consensus       513 ~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (657)
                      +|++++ +|.++++.+||+.+.++++|.+++|++.++.   +.+++++++.++..          .      +.      
T Consensus       418 ~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------~------~~------  474 (521)
T PRK06187        418 KDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGAT----------L------DA------  474 (521)
T ss_pred             cceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCC----------C------CH------
Confidence            999997 8999999999999999999999999986543   47888888765420          0      11      


Q ss_pred             HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          590 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       590 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                        +.+.+.+ +..++++.+|..++++++      +|+|++||++|++|+++|++
T Consensus       475 --~~l~~~l-~~~l~~~~~p~~i~~v~~------~P~t~~gK~~r~~l~~~~~~  519 (521)
T PRK06187        475 --KELRAFL-RGRLAKFKLPKRIAFVDE------LPRTSVGKILKRVLREQYAE  519 (521)
T ss_pred             --HHHHHHH-HHhccCCCCceEEEEccC------CCCCCCCCeeHHHHHHHHhc
Confidence              2233333 357899999999998765      49999999999999999875

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=3e-61  Score=533.60  Aligned_cols=499  Identities=21%  Similarity=0.231  Sum_probs=397.8

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      .++.++|+.+++.+|+++|+++.   +...+.++.+||.||.+++.++|.+|++.|+++||+|+++++|+++++++++||
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~   98 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC   98 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            47999999999999999999864   222233578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh----hhhccccccccCceEEEEecCCcHHHHHHHhhCCcce
Q 006197          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (657)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (657)
                      +++|++++|++|..+.+++.++++.+++++++++.....    ..........+....++..+....             
T Consensus        99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  165 (538)
T TIGR03208        99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGD-------------  165 (538)
T ss_pred             HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCC-------------
Confidence            999999999999999999999999999999999875421    011111112233445555543211             


Q ss_pred             eeHHHHHhcCccCC-------ccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEE
Q 006197          198 YSWDEFLHLGKVNE-------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (657)
Q Consensus       198 ~~~~~l~~~~~~~~-------~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (657)
                      ..++.++.......       .......++++++++|||||||.||+|+++|+++...+......+     ++..+|+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l  240 (538)
T TIGR03208       166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVIL  240 (538)
T ss_pred             cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeEE
Confidence            12233222110000       111234678999999999999999999999999998888776666     688899999


Q ss_pred             EecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006197          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (657)
Q Consensus       271 ~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (657)
                      +.+|++|..++.. .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+........              
T Consensus       241 ~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--------------  306 (538)
T TIGR03208       241 MASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG--------------  306 (538)
T ss_pred             EeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC--------------
Confidence            9999999988765 5667999999988765 89999999999999999999999988764321110              


Q ss_pred             HHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC
Q 006197          349 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  428 (657)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~  428 (657)
                                                  ...+++|.+++||+++++++.+++.+.+++++++.||+||++.+.+......
T Consensus       307 ----------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  358 (538)
T TIGR03208       307 ----------------------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDA  358 (538)
T ss_pred             ----------------------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccc
Confidence                                        0114899999999999999999999888999999999999987766544322


Q ss_pred             -ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEE
Q 006197          429 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK  507 (657)
Q Consensus       429 -~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~  507 (657)
                       .....++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+.. ..+|||+|||+|++|++|.++
T Consensus       359 ~~~~~~~~G~~~~g~~v~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g~l~  434 (538)
T TIGR03208       359 LEKASTTDGRPLPGVEVKVID-ANGA--KLSQGETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAEGYIR  434 (538)
T ss_pred             hhhccCcccccCCCCEEEEEC-CCCC--CCcCCCCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCCCcEE
Confidence             22236789999999999998 6554  455678999999999999999999877642 368999999999999999999


Q ss_pred             EEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccH
Q 006197          508 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  584 (657)
Q Consensus       508 i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (657)
                      ++||.+|+|++ +|++|+|.+||+.|.+||+|.+++|++.++.   +.+++++++..+.        ..        .  
T Consensus       435 ~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~--------~--  495 (538)
T TIGR03208       435 INGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGC--------TL--------D--  495 (538)
T ss_pred             EEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCC--------CC--------C--
Confidence            99999999996 8999999999999999999999999987644   4788888887532        00        0  


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006197          585 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  638 (657)
Q Consensus       585 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~  638 (657)
                            .+.+.+.+.+..++.|++|..+.++++.      |+|++||++|++|+
T Consensus       496 ------~~~l~~~~~~~~l~~~~~P~~i~~v~~i------P~t~~gKv~r~~L~  537 (538)
T TIGR03208       496 ------FAAMVAFLKAQKVALQYIPERLEVVDAL------PATPAGKIQKFRLR  537 (538)
T ss_pred             ------HHHHHHHHHhcchhhccCCcEEEEeccC------CCCCccccchHhhc
Confidence                  1223344433478999999999987664      99999999999985

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=2.1e-61  Score=532.73  Aligned_cols=503  Identities=23%  Similarity=0.271  Sum_probs=400.3

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      .++|.++|+++++++|+++|+++.   + ..++++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la   81 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG   81 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999886   4 344568899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++++++..+.+++.++++.+++++++++.+..+.+.+.........+.++..+.....        .....++
T Consensus        82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  153 (517)
T PRK08008         82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSSF  153 (517)
T ss_pred             HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccCH
Confidence            99999999999999999999999999999999999887665543332222344455554432110        0112344


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (657)
                      .++...............++++++++|||||||.||+|++||.++...........     .+..++++++.+|++|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  228 (517)
T PRK08008        154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHIDC  228 (517)
T ss_pred             HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHHH
Confidence            44433221111122334678999999999999999999999999986543322222     5778999999999999877


Q ss_pred             HHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCC
Q 006197          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK  358 (657)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (657)
                      ... .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+........                        
T Consensus       229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------  284 (517)
T PRK08008        229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN------------------------  284 (517)
T ss_pred             HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc------------------------
Confidence            664 5667889999998876 89999999999999999999999988753211000                        


Q ss_pred             CCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcC
Q 006197          359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV  438 (657)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~  438 (657)
                                        ...++++.+.++ .++++.....+.+.++.++++.||+||+++.++..........+++|.|
T Consensus       285 ------------------~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~  345 (517)
T PRK08008        285 ------------------DRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRP  345 (517)
T ss_pred             ------------------cccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccC
Confidence                              001267777665 4789999999988889999999999999876665544444455789999


Q ss_pred             ccCeeEEEeecCCCCCCCCCCCCCceEEEcc---CCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecCcc
Q 006197          439 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRG---KTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKN  514 (657)
Q Consensus       439 ~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g---~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~~d  514 (657)
                      +++++++++| +++.  +++.|+.|||+++|   ++++.||+++++.+.+.| .+|||+|||+|++|++|.+++.||.+|
T Consensus       346 ~~g~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d  422 (517)
T PRK08008        346 GFCYEAEIRD-DHNR--PLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCN  422 (517)
T ss_pred             CCCcEEEEEC-CCCC--CCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccc
Confidence            9999999998 6554  45567899999998   689999999999999888 689999999999999999999999999


Q ss_pred             eeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHH
Q 006197          515 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL  591 (657)
Q Consensus       515 ~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (657)
                      +|++ +|++|+|.+||+++.+||.|.+++|++.++.   +.++++|+++.+..        .        .        .
T Consensus       423 ~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~--------~--------~--------~  477 (517)
T PRK08008        423 MIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGET--------L--------S--------E  477 (517)
T ss_pred             eEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCC--------C--------C--------H
Confidence            9996 7999999999999999999999999997654   47888888876420        0        1        1


Q ss_pred             HHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006197          592 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  638 (657)
Q Consensus       592 ~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~  638 (657)
                      +++.++++ ..++.|++|..+.+++.      +|+|++||++|+.|+
T Consensus       478 ~~l~~~~~-~~l~~~~~P~~~~~v~~------iP~t~~gK~~r~~l~  517 (517)
T PRK08008        478 EEFFAFCE-QNMAKFKVPSYLEIRKD------LPRNCSGKIIKKNLK  517 (517)
T ss_pred             HHHHHHHH-hhcccccCCcEEEEecc------CCCCCccceehhhcC
Confidence            23444444 57999999999998765      499999999999864

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.9e-62  Score=553.38  Aligned_cols=477  Identities=21%  Similarity=0.199  Sum_probs=385.5

Q ss_pred             CcHHHHHHHHHHc--CCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           42 NTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        42 ~~i~~~l~~~a~~--~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      .|+.++|..++..  +||++|+...          ..+||+||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   73 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL   73 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4788999888886  7999999743          369999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++|++|.++.+++.++++.++++++|++......+...         .++                     .
T Consensus        74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~  123 (705)
T PRK06060         74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E  123 (705)
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence            9999999999999999999999999999999999987654433110         000                     0


Q ss_pred             HHHHHhcC-ccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhh-hhcccccCCCCCCcEEEEecChhH
Q 006197          200 WDEFLHLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD-LFLDQFEDKMTVDDVYLSFLPLAH  277 (657)
Q Consensus       200 ~~~l~~~~-~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~-~~~~~~~~~~~~~d~~l~~~pl~~  277 (657)
                      ...++... ...+.......++++++++|||||||.||+|+++|+++..+...+. ..+     .+.++|++++..|++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  198 (705)
T PRK06060        124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF  198 (705)
T ss_pred             hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence            00111100 0011111234568999999999999999999999999988776543 234     6788999999999999


Q ss_pred             HHHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhh
Q 006197          278 ILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMN  354 (657)
Q Consensus       278 ~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (657)
                      .+++.. .+.++..|+++++.+.  ++..+...+.++++|+++++|+++..+.+....                      
T Consensus       199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------  256 (705)
T PRK06060        199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----------------------  256 (705)
T ss_pred             hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------
Confidence            888754 5677999999998864  788889999999999999999999887643110                      


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCCccccC
Q 006197          355 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVG  433 (657)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~  433 (657)
                                            ..++++|.+++||+++++++.+.+.+.+ +.++++.||+||++..+....... ...+
T Consensus       257 ----------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~~~~  313 (705)
T PRK06060        257 ----------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDE-WRLG  313 (705)
T ss_pred             ----------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCC-CCcC
Confidence                                  0114899999999999999999999888 589999999999986654443322 2347


Q ss_pred             ccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCc
Q 006197          434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  513 (657)
Q Consensus       434 ~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~  513 (657)
                      ++|.|+++++++|++ +++.  +++.|+.|||||+|++++.||+++++.+..  .+|||+|||+|+++++|++++.||.+
T Consensus       314 ~iG~p~~~~~v~i~d-~~g~--~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~GR~d  388 (705)
T PRK06060        314 TLGRVLPPYEIRVVA-PDGT--TAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRCRAD  388 (705)
T ss_pred             cccccCCCcEEEEEC-CCCC--CCCCCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCCceEEEecccC
Confidence            899999999999998 6554  456678999999999999999999876432  47999999999999999999999999


Q ss_pred             ceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHH
Q 006197          514 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  590 (657)
Q Consensus       514 d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (657)
                      |+||+ +|++|++.+||+.|.+||.|.+|+|++.++.   +.++++|++..+..                 .+.+    .
T Consensus       389 d~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~-----------------~~~~----~  446 (705)
T PRK06060        389 DTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGAT-----------------IDGS----V  446 (705)
T ss_pred             ceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccC-----------------cChH----H
Confidence            99997 7999999999999999999999999987643   47888888765320                 0111    1


Q ss_pred             HHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          591 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       591 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                      .+.++++++ +.||.|++|..|+++++.      |+|++||++|++|++.+.
T Consensus       447 ~~~i~~~l~-~~L~~~~~P~~i~~v~~i------P~t~~GKidr~~L~~~~~  491 (705)
T PRK06060        447 MRDLHRGLL-NRLSAFKVPHRFAVVDRL------PRTPNGKLVRGALRKQSP  491 (705)
T ss_pred             HHHHHHHHH-HhCCCCcCCcEEEEeecC------CCCcchhhHHHHHHhhcc
Confidence            233444444 689999999999997664      999999999999998764

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=3.7e-61  Score=531.53  Aligned_cols=494  Identities=19%  Similarity=0.180  Sum_probs=394.8

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..++.++|+++++++|+++|+++.    +     +++||.||.++++++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la   92 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA   92 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            457999999999999999999864    3     5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh----hhhccccccccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (657)
                      |+++|++++++++..+.+++.++++.+++++++++.....    .+........+....++........           
T Consensus        93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  161 (527)
T TIGR02275        93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVE-----------  161 (527)
T ss_pred             HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCc-----------
Confidence            9999999999999999999999999999999999865321    1111111111223333333221000           


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                       ......+... ..........++++++++|||||||.||+|++||+++..++......+     .+..+|++++.+|++
T Consensus       162 -~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~  234 (527)
T TIGR02275       162 -AELFLWLESP-AEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA  234 (527)
T ss_pred             -chhhHHhhCc-CccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence             0011111111 111122345678999999999999999999999999998887766655     688899999999999


Q ss_pred             HHHHHHH--HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM  353 (657)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (657)
                      |.+++..  .+.++..|+++++.+. ++..++..++++++|++.++|.++..+.+......                   
T Consensus       235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------  295 (527)
T TIGR02275       235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-------------------  295 (527)
T ss_pred             hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-------------------
Confidence            9998864  5667899999888665 88999999999999999999999988765322100                   


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccC
Q 006197          354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  433 (657)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~  433 (657)
                                             ..++++|.+++||+++++++.+.+.+.+|.++++.||+||++..............+
T Consensus       296 -----------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~  352 (527)
T TIGR02275       296 -----------------------YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFT  352 (527)
T ss_pred             -----------------------CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccc
Confidence                                   011489999999999999999999998899999999999976443322222223346


Q ss_pred             ccCcCcc-CeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEec
Q 006197          434 TAGPVSV-YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR  511 (657)
Q Consensus       434 ~~G~~~~-~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR  511 (657)
                      ++|.|++ +.++++++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++|++++.||
T Consensus       353 ~~G~~~~~~~~v~i~d-~~g~--~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR  429 (527)
T TIGR02275       353 TQGRPMSPDDEVRVVD-DHGN--PVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGR  429 (527)
T ss_pred             cCCCCCCCCceEEEEC-CCCC--CCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEec
Confidence            8899994 88999998 6554  45567899999999999999999999998888 789999999999999999999999


Q ss_pred             CcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHH
Q 006197          512 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  588 (657)
Q Consensus       512 ~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (657)
                      .+|+|++ +|.+|+|.+||+.|.+||+|.+|+|++.++.   +.++++|++.++..                 .      
T Consensus       430 ~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~-----------------~------  485 (527)
T TIGR02275       430 AKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPAL-----------------K------  485 (527)
T ss_pred             ccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCC-----------------C------
Confidence            9999996 8999999999999999999999999997754   47888888765320                 1      


Q ss_pred             HHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006197          589 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  638 (657)
Q Consensus       589 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~  638 (657)
                        ..+|++++++..+|.|++|..+.++++.      |+|++||++|++|+
T Consensus       486 --~~~l~~~l~~~~l~~~~~P~~i~~v~~i------P~t~sGKv~r~~L~  527 (527)
T TIGR02275       486 --AAQLRRFLRERGLAEYKLPDRVEFIDSL------PLTAVGKIDKKALR  527 (527)
T ss_pred             --HHHHHHHHHhCCCccccCCCEEEEeccC------CCCCccceeHHhcC
Confidence              1344555553469999999999997654      99999999999873

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=5.5e-62  Score=594.87  Aligned_cols=538  Identities=17%  Similarity=0.131  Sum_probs=402.1

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCC---CCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~---~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~  117 (657)
                      ..++.++|+++++++|+++|+++.   +..   ....+++||+||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus       235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~  311 (1389)
T TIGR03443       235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA  311 (1389)
T ss_pred             cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence            357999999999999999999864   211   12347899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhh---hhhhcccccc---ccCceEEEEecCCcHHHHHHHh
Q 006197          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---KELLSPDCRS---AQRLRVMVCFTSLTAEQKEMAV  191 (657)
Q Consensus       118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~  191 (657)
                      +|||+++|++++|++|.++.+++.++++.++++++++.....   ..+.......   ......+...+.....      
T Consensus       312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  385 (1389)
T TIGR03443       312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLV------  385 (1389)
T ss_pred             HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccc------
Confidence            999999999999999999999999999999999999876421   1110000000   0011111111100000      


Q ss_pred             hCCcceeeHHHHHhcCc--cCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEE
Q 006197          192 QTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (657)
Q Consensus       192 ~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (657)
                       .........+.+....  ..........++++++|+|||||||.||||+++|+++.+.+.++...+     ++.++|++
T Consensus       386 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  459 (1389)
T TIGR03443       386 -GGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF  459 (1389)
T ss_pred             -ccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence             0000000000110000  001111234678999999999999999999999999999988777666     78899999


Q ss_pred             EEecChhHHHHHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 006197          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (657)
Q Consensus       270 l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  345 (657)
                      +...|++|..++..++.+|+.|+++++.+.    ++..+++.|+++++|+++++|++++.|.....              
T Consensus       460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------  525 (1389)
T TIGR03443       460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT--------------  525 (1389)
T ss_pred             EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc--------------
Confidence            999999998888888889999999998764    57889999999999999999999987753100              


Q ss_pred             HHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccc
Q 006197          346 DALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVC  424 (657)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~  424 (657)
                                                     ...++||.+++||+++++...+.+.+.. +.+++|.||+||++..++..
T Consensus       526 -------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~  574 (1389)
T TIGR03443       526 -------------------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYF  574 (1389)
T ss_pred             -------------------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEE
Confidence                                           0114899999999999999998887765 78999999999998766643


Q ss_pred             cCCC----------ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc------
Q 006197          425 FPDE----------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------  488 (657)
Q Consensus       425 ~~~~----------~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~------  488 (657)
                      ....          .....++|.|+++++++|+| +++...+++.|+.|||+|+||+++.||+++|+.|.+.|.      
T Consensus       575 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~  653 (1389)
T TIGR03443       575 EIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVD  653 (1389)
T ss_pred             EccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccC
Confidence            2211          01235789999999999998 666556777889999999999999999999999988872      


Q ss_pred             -----------------------CCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEE
Q 006197          489 -----------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY  545 (657)
Q Consensus       489 -----------------------~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv  545 (657)
                                             ++||+|||+|++++||.|+++||.||+||+ +|++|+|.+||++|.+||.|.+++|+
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~v~  732 (1389)
T TIGR03443       654 PSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENVTL  732 (1389)
T ss_pred             cccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeEEE
Confidence                                   579999999999999999999999999997 89999999999999999999999998


Q ss_pred             ecCCC---CeEEEEEecChhhH--HHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCC
Q 006197          546 GDSLK---SMLVAVVVPCEEDT--KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFD  620 (657)
Q Consensus       546 ~~~~~---~~~~a~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~  620 (657)
                      +..+.   +.+++++++..+..  ..+........+-..............+.++++++ .+||.|++|..+++++.   
T Consensus       733 ~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Lp~y~~P~~~~~~~~---  808 (1389)
T TIGR03443       733 VRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLK-KKLPSYAIPTVIVPLKK---  808 (1389)
T ss_pred             EeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHH-hhCCcccCCceEEEccc---
Confidence            75433   47999998763210  00000000000000000000111223455666665 68999999999988655   


Q ss_pred             CCCCccccccccchHHHHHHHHHHHHH
Q 006197          621 MERDLVTATLKKKRNKLLIYYQVEIDQ  647 (657)
Q Consensus       621 ~~~~P~t~~GKv~r~~l~~~~~~~i~~  647 (657)
                         +|+|++|||+|++|++.+.+.++.
T Consensus       809 ---lP~t~~GKidr~~L~~~~~~~~~~  832 (1389)
T TIGR03443       809 ---LPLNPNGKVDKPALPFPDTAQLAA  832 (1389)
T ss_pred             ---CCCCCCccccHhhcCCCchhhhhh
Confidence               499999999999997665555543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.6e-61  Score=531.29  Aligned_cols=506  Identities=25%  Similarity=0.294  Sum_probs=410.5

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..++.++|...++++|+++|+.+.   +      +.+||.||.+.+.++|..|.+.|+++||+|+++++|+++++++++|
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a   80 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA   80 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578999999999999999999875   3      5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|+++..+.+++..+++.+++++++++......+.+...... .....+......       .........+
T Consensus        81 ~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~  152 (523)
T PRK08316         81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP-VDTLILSLVLGG-------REAPGGWLDF  152 (523)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC-ccceeeeecccc-------cccccchhhH
Confidence            99999999999999999999999999999999999887665543221111 000111000000       0011122344


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (657)
                      .++..... ..........+++++++|||||||.||+|.+||.++..........+     ++.++++++..+|++|..+
T Consensus       153 ~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g  226 (523)
T PRK08316        153 ADWAEAGS-VAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQ  226 (523)
T ss_pred             HHHHhcCC-CccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhh
Confidence            44443321 11223345778999999999999999999999999998877766655     7899999999999999998


Q ss_pred             HHHH-HHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCC
Q 006197          281 RVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK  358 (657)
Q Consensus       281 ~~~~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (657)
                      +... +.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+....                          
T Consensus       227 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------  280 (523)
T PRK08316        227 LDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDF--------------------------  280 (523)
T ss_pred             HHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc--------------------------
Confidence            8754 446889999998865 899999999999999999999999887642110                          


Q ss_pred             CCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC-ccccCccC
Q 006197          359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG  436 (657)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~~G  436 (657)
                              ...        .++++|.+++||+.++.++.+.+.+.+ +.++++.||+||++.+++...... ....+++|
T Consensus       281 --------~~~--------~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G  344 (523)
T PRK08316        281 --------DTR--------DLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAG  344 (523)
T ss_pred             --------ccC--------CcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcc
Confidence                    000        114899999999999999999999887 789999999999998776654432 23458999


Q ss_pred             cCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCccee
Q 006197          437 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  516 (657)
Q Consensus       437 ~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i  516 (657)
                      .|+++++++|++ +++.  +++.|+.|||+++|+.++.||++++..+.+.|.+|||+|||+|+++++|.+++.||.+|+|
T Consensus       345 ~~~~~~~~~i~~-~~~~--~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~~~i  421 (523)
T PRK08316        345 RPVLNVETRVVD-DDGN--DVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMI  421 (523)
T ss_pred             cCCCCcEEEEEc-CCCC--CCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccccEE
Confidence            999999999998 6654  4555789999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHH
Q 006197          517 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  593 (657)
Q Consensus       517 ~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (657)
                      ++ +|.+|+|.+||+.|.++++|.+++|++.+++   +.++++++++++..          .      .        .+.
T Consensus       422 ~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------~------~--------~~~  476 (523)
T PRK08316        422 KT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGAT----------V------T--------EDE  476 (523)
T ss_pred             Ee-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCC----------C------C--------HHH
Confidence            97 8999999999999999999999999997654   46888888876420          0      0        122


Q ss_pred             HHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006197          594 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  646 (657)
Q Consensus       594 l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~  646 (657)
                      +.+.++ ..|+.+++|..+.++++.      |+|++||++|++|+++|.++++
T Consensus       477 l~~~~~-~~l~~~~~p~~i~~v~~~------p~t~~gKi~r~~l~~~~~~~~~  522 (523)
T PRK08316        477 LIAHCR-ARLAGFKVPKRVIFVDEL------PRNPSGKILKRELRERYAGAFT  522 (523)
T ss_pred             HHHHHH-HhcccCCCCcEEEEecCC------CCCCccceeHHHHHHHHHhhcc
Confidence            333333 578999999999998654      9999999999999999998875

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=1.3e-60  Score=529.96  Aligned_cols=506  Identities=21%  Similarity=0.261  Sum_probs=404.8

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      .++.++|++.++++||++|+++.   ++     +++||+||.++++++|++|++.|+++||+|+++++|+++++++++||
T Consensus        23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~   94 (547)
T PRK06087         23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC   94 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            47999999999999999999864   43     58999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhh-----hhhhccccccccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (657)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (657)
                      +++|++++|+++..+.+++..+++.+++++++++....     ..+.. ..........++..+.....         ..
T Consensus        95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~  164 (547)
T PRK06087         95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILP-LQNQLPQLQQIVGVDKLAPA---------TS  164 (547)
T ss_pred             HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHH-HHhhCCCCcEEEEeCCcCCC---------cC
Confidence            99999999999999999999999999999999976321     11111 11122334455554432210         01


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                      ..++.++....... ........+++++|+|||||||.||+|++||.++......+...+     ++.++|++++.+|++
T Consensus       165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~  238 (547)
T PRK06087        165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLG  238 (547)
T ss_pred             ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchH
Confidence            12444444332111 122235678999999999999999999999999988877766555     688999999999999


Q ss_pred             HHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhh
Q 006197          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMN  354 (657)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (657)
                      |.+++.. .+.++..|+++++.+. ++..+++.++++++|+++++|+.+..+++.....                     
T Consensus       239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~---------------------  297 (547)
T PRK06087        239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ---------------------  297 (547)
T ss_pred             HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC---------------------
Confidence            9998764 5667889999988876 8999999999999999998887766655422100                     


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC-ccccC
Q 006197          355 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG  433 (657)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~  433 (657)
                                           ...++++|.+++||+++++++.+.+.+. ++++++.||+||++.......... ....+
T Consensus       298 ---------------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~  355 (547)
T PRK06087        298 ---------------------PADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSRFMH  355 (547)
T ss_pred             ---------------------CCCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhhcCC
Confidence                                 0012489999999999999999888764 999999999999988766544332 22336


Q ss_pred             ccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecC
Q 006197          434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK  512 (657)
Q Consensus       434 ~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~  512 (657)
                      ++|.|++++.++++| +++.  +++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||++++|++|.+++.||.
T Consensus       356 ~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~  432 (547)
T PRK06087        356 TDGYAAAGVEIKVVD-EARK--TLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRK  432 (547)
T ss_pred             cCCccCCCceEEEEc-CCCC--CCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecc
Confidence            789999999999998 6554  45567899999999999999999999888887 6899999999999999999999999


Q ss_pred             cceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHH
Q 006197          513 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  589 (657)
Q Consensus       513 ~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (657)
                      +|+|+. +|.+|+|.+||+.|.++|+|.+++|++.+++   +.+++++++.....         ..      .       
T Consensus       433 ~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~---------~~------~-------  489 (547)
T PRK06087        433 KDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH---------SL------T-------  489 (547)
T ss_pred             hhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC---------CC------C-------
Confidence            999996 8999999999999999999999999997644   47888888764210         00      0       


Q ss_pred             HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006197          590 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  647 (657)
Q Consensus       590 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~  647 (657)
                       .+++.+.+++..++.+++|..|.++++.      |+|.+||++|++|++++.+.+.+
T Consensus       490 -~~~~~~~~~~~~l~~~~~P~~i~~v~~i------P~t~sGK~~r~~l~~~~~~~~~~  540 (547)
T PRK06087        490 -LEEVVAFFSRKRVAKYKYPEHIVVIDKL------PRTASGKIQKFLLRKDIMRRLTQ  540 (547)
T ss_pred             -HHHHHHHHHhccccccCCCeEEEEeccC------CCCCCCcCcHHHHHHHHHHHhhh
Confidence             1233444434689999999999998664      99999999999999999887654

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=3.3e-61  Score=548.98  Aligned_cols=489  Identities=20%  Similarity=0.253  Sum_probs=379.4

Q ss_pred             cCcHHHHHHHHHHcCCC-CCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~-~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ..++.++|.+.++++|+ ++|+...   +     ++++||+||.++++++|++|.+. +++||+|+++++|++++++++|
T Consensus       203 ~~t~~~~l~~~~~~~p~~~~a~~~~---~-----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~l  273 (718)
T PRK08043        203 RETLYEALLSAQYRYGAGKPCIEDV---N-----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIF  273 (718)
T ss_pred             CCCHHHHHHHHHHHhCCCCcceEcC---C-----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHH
Confidence            57899999999999998 5777532   1     25799999999999999999987 5999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhc-cccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      ||+++|++++|+++.++.+++.++++.++++++|++.+..+.... .......... ++.+.+....            .
T Consensus       274 A~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~------------~  340 (718)
T PRK08043        274 GASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-WVYLEDLKDD------------V  340 (718)
T ss_pred             HHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-EEEhhhhhhh------------c
Confidence            999999999999999999999999999999999998776543110 0111111111 2222211000            0


Q ss_pred             eHHHH----HhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecC
Q 006197          199 SWDEF----LHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (657)
Q Consensus       199 ~~~~l----~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (657)
                      .+...    .... ..........++|+++++|||||||.||+|++||+++.+.+......+     ++.++|++++.+|
T Consensus       341 ~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P  414 (718)
T PRK08043        341 TTADKLWIFAHLL-MPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP  414 (718)
T ss_pred             chhHHHHHHHHHh-CCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence            00000    0000 000111234678999999999999999999999999998887766555     7889999999999


Q ss_pred             hhHHHHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006197          275 LAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLA  351 (657)
Q Consensus       275 l~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (657)
                      ++|.+++.. .+.++..|+++++.+.  +...+.+.+.++++|+++++|+++..+.+..                     
T Consensus       415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~---------------------  473 (718)
T PRK08043        415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA---------------------  473 (718)
T ss_pred             chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc---------------------
Confidence            999999865 5678999999998864  5678889999999999999999887654310                     


Q ss_pred             HhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccc
Q 006197          352 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  431 (657)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~  431 (657)
                                     +..+        .++||.+++||+++++++.+.+.+.+|+++++.||+||+++.++...... ..
T Consensus       474 ---------------~~~~--------~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~  529 (718)
T PRK08043        474 ---------------NPYD--------FARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA-AK  529 (718)
T ss_pred             ---------------Cccc--------ccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc-cC
Confidence                           0001        14899999999999999999999889999999999999987766543322 34


Q ss_pred             cCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCC--chh-------hhcc-ccCCccccCceEEEc
Q 006197          432 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN--PDL-------TRES-IIDGWFHTGDIGQIL  501 (657)
Q Consensus       432 ~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~--~~~-------~~~~-~~~g~~~TGDl~~~~  501 (657)
                      .+++|+|++++++++++ +++.      ++.|||+++|++++.||+++  ++.       +... +.+|||+|||+|++|
T Consensus       530 ~~svG~p~pg~~~~i~d-~~~~------~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d  602 (718)
T PRK08043        530 PGTVGRILPGMDARLLS-VPGI------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFD  602 (718)
T ss_pred             CCCCCCcCCCCeeEEec-CCCC------CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEc
Confidence            58999999999999998 4431      34699999999999999983  332       2222 357999999999999


Q ss_pred             CCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHH
Q 006197          502 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL  578 (657)
Q Consensus       502 ~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~  578 (657)
                      +||++++.||.+|+|++ +|++|+|.+||+.+.+|+.+.+++|++.++.   +.+++++.... .               
T Consensus       603 ~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~-~---------------  665 (718)
T PRK08043        603 EQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSE-L---------------  665 (718)
T ss_pred             CCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcc-c---------------
Confidence            99999999999999997 7999999999999999998888889886654   35555543111 0               


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          579 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       579 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                         .        .+.+++++++..||.|++|+.+.++++.      |+|++||++|++|++++.+
T Consensus       666 ---~--------~~~l~~~~~~~~l~~~~vP~~i~~v~~l------P~t~~GKi~r~~L~~~~~~  713 (718)
T PRK08043        666 ---T--------REKLQQYAREHGVPELAVPRDIRYLKQL------PLLGSGKPDFVTLKSMVDE  713 (718)
T ss_pred             ---C--------HHHHHHHHHhcCCCcccCCceEEEeccc------CcCCCCCcCHHHHHHHHhc
Confidence               1        1234555544459999999999998764      9999999999999887654

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=7.4e-61  Score=531.23  Aligned_cols=518  Identities=22%  Similarity=0.252  Sum_probs=405.7

Q ss_pred             CCceeccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCC
Q 006197           22 GPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG  101 (657)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~g  101 (657)
                      +.+|++......    .+...|+.++|.++++++|+++|+.+.   .+.    +.+||.||.+++.++|..|.+.|+++|
T Consensus        12 ~~~~~~~~~~~~----~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g   80 (546)
T PLN02330         12 EHIFRSRYPSVP----VPDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLGLRKG   80 (546)
T ss_pred             ceeeccCCCCCC----CCCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhCCCCC
Confidence            456666544432    234578999999999999999999863   222    579999999999999999999999999


Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecC
Q 006197          102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS  181 (657)
Q Consensus       102 d~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~  181 (657)
                      |+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+...      .. .++.++.
T Consensus        81 ~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~------~~-~~i~~~~  153 (546)
T PLN02330         81 QVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL------GL-PVIVLGE  153 (546)
T ss_pred             CEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc------CC-cEEEecC
Confidence            9999999999999999999999999999999999999999999999999999998877655321      11 1233322


Q ss_pred             CcHHHHHHHhhCCcceeeHHHHHhcCccC--CccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccc
Q 006197          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVN--EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF  259 (657)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~  259 (657)
                      ..          ......|.+++......  ........++++++++|||||||.||+|+++|+++..+.......+   
T Consensus       154 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---  220 (546)
T PLN02330        154 EK----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV---  220 (546)
T ss_pred             CC----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc---
Confidence            11          01123466665443211  1112334578999999999999999999999999987654321111   


Q ss_pred             cCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 006197          260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (657)
Q Consensus       260 ~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~  337 (657)
                      .......++++..+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.....      
T Consensus       221 ~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------  294 (546)
T PLN02330        221 GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI------  294 (546)
T ss_pred             CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc------
Confidence            112234578999999999998864 5667899999888776 89999999999999999999999988764211      


Q ss_pred             chHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCC
Q 006197          338 RPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTE  416 (657)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE  416 (657)
                                                  .+.+++..      .++|.++++|+++++.+.+++.+.+ +.++++.||+||
T Consensus       295 ----------------------------~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE  340 (546)
T PLN02330        295 ----------------------------VEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTE  340 (546)
T ss_pred             ----------------------------ccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccc
Confidence                                        00011110      1579999999999999999999988 899999999999


Q ss_pred             CCCccccccCCC----ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCc
Q 006197          417 TCGPTTVCFPDE----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW  491 (657)
Q Consensus       417 ~~~~~~~~~~~~----~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~  491 (657)
                      ++.+........    ....+++|.|++++++++++ ++++ .+++.|+.|||+++|+.++.||+++++.+.+.+ .+||
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~-~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~  418 (546)
T PLN02330        341 HSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID-PDTG-RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGW  418 (546)
T ss_pred             cccceecCCCccccccccccCccccccCCcEEEEEe-CCCC-ccCCCCCceEEEEecchhhhhhccCccchhhhccCCCc
Confidence            986554332111    12336899999999999998 4433 455677899999999999999999999888877 6899


Q ss_pred             cccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHH
Q 006197          492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWA  568 (657)
Q Consensus       492 ~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~  568 (657)
                      |+|||+|+++++|+++++||.+|+|++ +|++|+|.+||+.|.++|.|.+++|++.++.   +.++++|++.++..    
T Consensus       419 ~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~----  493 (546)
T PLN02330        419 LHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAK----  493 (546)
T ss_pred             eecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCC----
Confidence            999999999999999999999999997 7999999999999999999999999996643   47888888775420    


Q ss_pred             HHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          569 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                            .      ..        +.|.++++ ..|+.|++|+.+.++++.      |+|++||++|++|++++...
T Consensus       494 ------~------~~--------~~l~~~~~-~~l~~~~~p~~~~~v~~i------P~t~~GK~~r~~L~~~~~~~  542 (546)
T PLN02330        494 ------E------SE--------EDILNFVA-ANVAHYKKVRVVQFVDSI------PKSLSGKIMRRLLKEKMLSI  542 (546)
T ss_pred             ------C------CH--------HHHHHHHH-HhcccccCceEEEEeccC------CCCCCcceeHHHHHHHHHhh
Confidence                  0      11        22333443 579999999999887664      99999999999999998654

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.6e-61  Score=529.57  Aligned_cols=501  Identities=23%  Similarity=0.289  Sum_probs=399.3

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...|+.++|...++++|+++|+.+.   +      +++||.||.+++.++|..|++.|+++||+|+++++|+++++++++
T Consensus         5 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l   75 (528)
T PRK07470          5 RVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF   75 (528)
T ss_pred             cCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3567999999999999999999864   2      579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++++++..+.+++.++++.++++.++++.......... .........++.+.....            ..+
T Consensus        76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~  142 (528)
T PRK07470         76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAV-RAASPDLTHVVAIGGARA------------GLD  142 (528)
T ss_pred             HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHH-HhhCCcCceEEEeCCCcc------------ccc
Confidence            9999999999999999999999999999999999998755433211 111123334444433210            124


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (657)
                      +.+++..............++++++++|||||||.||+|+++|+++...+......+   ..+...+|+++..+|++|.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~  219 (528)
T PRK07470        143 YEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGA  219 (528)
T ss_pred             HHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHH
Confidence            555544322222223345678999999999999999999999999876554322211   11467889999999999998


Q ss_pred             HHHHHHHHHhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG  356 (657)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (657)
                      ++... ..+..|+++++++.   ++..+++.|+++++|++.++|++++.+.+...                         
T Consensus       220 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  273 (528)
T PRK07470        220 GIHQL-CQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPA-------------------------  273 (528)
T ss_pred             HHHHH-HHHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC-------------------------
Confidence            88654 35677777776653   78999999999999999999999988764211                         


Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCC-------Cc
Q 006197          357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-------EM  429 (657)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~-------~~  429 (657)
                               .+        ...++++|.+++||+++++...+++.+.++.++++.||+||+++.++.....       ..
T Consensus       274 ---------~~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~  336 (528)
T PRK07470        274 ---------VD--------RYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPD  336 (528)
T ss_pred             ---------cC--------CCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhcccccccc
Confidence                     00        0112489999999999999999999888899999999999998766544321       12


Q ss_pred             cccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEE
Q 006197          430 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII  509 (657)
Q Consensus       430 ~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~  509 (657)
                      ...+++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|+++++|++++.
T Consensus       337 ~~~~~~G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~  413 (528)
T PRK07470        337 ARIGTCGFERTGMEVQIQD-DEGR--ELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYIT  413 (528)
T ss_pred             ceeeccCcccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCeEEEe
Confidence            2347899999999999998 6554  455678999999999999999999999998889999999999999999999999


Q ss_pred             ecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHH
Q 006197          510 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  586 (657)
Q Consensus       510 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (657)
                      ||.+|+|++ +|.+|+|.+||+.|.++|.|.+|+|++.++.   +.++++++..++..        .        +.   
T Consensus       414 GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------~--------~~---  473 (528)
T PRK07470        414 GRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAP--------V--------DE---  473 (528)
T ss_pred             CCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCC--------C--------CH---
Confidence            999999996 7999999999999999999999999997654   36777777765420        0        11   


Q ss_pred             HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          587 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       587 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                           +.++++++ +.||.|++|..++++++.      |+|++||++|+.|++++++
T Consensus       474 -----~~~~~~l~-~~l~~~~~P~~~~~~~~i------P~t~~GKi~r~~l~~~~~~  518 (528)
T PRK07470        474 -----AELLAWLD-GKVARYKLPKRFFFWDAL------PKSGYGKITKKMVREELEE  518 (528)
T ss_pred             -----HHHHHHHH-HhhhcCCCCcEEEEeccC------CCCCcccccHHHHHHHHHh
Confidence                 23344443 678999999999987654      9999999999999988866

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.3e-61  Score=529.95  Aligned_cols=503  Identities=25%  Similarity=0.276  Sum_probs=409.7

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      .-+|+.+.|..+++.+|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus        15 ~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~   85 (542)
T PRK07786         15 RRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL   85 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3568999999999999999999875   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++|+++..+.+++..+++.+++++++++......+.. .....+....++...+...          ....+
T Consensus        86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~  154 (542)
T PRK07786         86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATA-VRDIVPLLSTVVVAGGSSD----------DSVLG  154 (542)
T ss_pred             HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHH-hhhccCccceEEEecCCCc----------ccccC
Confidence            999999999999999999999999999999999999876654422 1122233445555443211          11234


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCC-CCCcEEEEecChhHH
Q 006197          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM-TVDDVYLSFLPLAHI  278 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~~~  278 (657)
                      +.++...... .........+++++++|||||||.||+|.+||+++...+......+     ++ ..++++++.+|++|.
T Consensus       155 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~  228 (542)
T PRK07786        155 YEDLLAEAGP-AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHI  228 (542)
T ss_pred             HHHHhhccCC-CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHH
Confidence            5555443221 1122334567899999999999999999999999998887765554     44 678999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q 006197          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM  355 (657)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (657)
                      +|+...+.++..|+++++.+.   ++..+++.++++++|+++++|+++..+.......    .                 
T Consensus       229 ~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~----~-----------------  287 (542)
T PRK07786        229 AGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQAR----P-----------------  287 (542)
T ss_pred             HHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccC----c-----------------
Confidence            998878888999999998652   8999999999999999999999998886431100    0                 


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC-ccccC
Q 006197          356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMVG  433 (657)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~  433 (657)
                                            ...++|.+++||+++++++.+.+.+.+ +.++++.||+||++.+.+...... ....+
T Consensus       288 ----------------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~  345 (542)
T PRK07786        288 ----------------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLG  345 (542)
T ss_pred             ----------------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCC
Confidence                                  002789999999999999999999887 788999999999987665443322 23447


Q ss_pred             ccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCc
Q 006197          434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  513 (657)
Q Consensus       434 ~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~  513 (657)
                      ++|.|++++.++|++ +++.  +++.++.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.+++.||.+
T Consensus       346 ~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~GR~~  422 (542)
T PRK07786        346 SVGKVIPTVAARVVD-ENMN--DVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKK  422 (542)
T ss_pred             CccccCCCceEEEEC-CCCC--CCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEeccc
Confidence            899999999999998 6554  4556789999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHH
Q 006197          514 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  590 (657)
Q Consensus       514 d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (657)
                      |+|++ +|.+|++.+||+.|.+||.|.+|+|++..+.   +.+++++++..+..         .              ..
T Consensus       423 d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---------~--------------~~  478 (542)
T PRK07786        423 DMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDA---------A--------------LT  478 (542)
T ss_pred             ceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCC---------C--------------CC
Confidence            99997 8999999999999999999999999986543   46778887765320         0              00


Q ss_pred             HHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          591 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       591 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                      .+++.+.+. ..++.|++|..+++++..      |+|++||++|++|+++|.+.-
T Consensus       479 ~~~l~~~l~-~~l~~~~~P~~i~~v~~i------P~t~~GKv~r~~L~~~~~~~~  526 (542)
T PRK07786        479 LEDLAEFLT-DRLARYKHPKALEIVDAL------PRNPAGKVLKTELRERYGACV  526 (542)
T ss_pred             HHHHHHHHH-hhccCCCCCCEEEEeccC------CCCCcccccHHHHHHHHHhhh
Confidence            123444443 679999999999987654      999999999999999887754

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.8e-61  Score=541.99  Aligned_cols=514  Identities=18%  Similarity=0.161  Sum_probs=385.5

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...++.++|+++++.+|+++|+++....+...+.++.+||+||.++++++|++|.+. +++||+|+++++|++++++++|
T Consensus        19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l   97 (631)
T PRK07769         19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF   97 (631)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence            446899999999999999999987510011223457899999999999999999987 8999999999999999999999


Q ss_pred             HHHhcCCEEEec-cCCCC--hhHHHHHHhccCceEEEEcchhhhhhhcccccc-ccCceEEEEecCCcHHHHHHHhhCCc
Q 006197          120 ACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTGI  195 (657)
Q Consensus       120 A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (657)
                      ||+++|++++|+ ++..+  .+++.++++.++++++|++.+....+....... ......++..+....           
T Consensus        98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  166 (631)
T PRK07769         98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPD-----------  166 (631)
T ss_pred             HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccccc-----------
Confidence            999999999999 45554  578999999999999999887654432211100 001112332221100           


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh
Q 006197          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (657)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  275 (657)
                             ..    ..........++++++|+|||||||.||+|++||+++..++......+     ++.++|++++.+|+
T Consensus       167 -------~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~Pl  230 (631)
T PRK07769        167 -------EV----GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-----EGQEGDRGVSWLPF  230 (631)
T ss_pred             -------cc----ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-----CCCCcceEEEeCCC
Confidence                   00    000111234678999999999999999999999999998877766555     68889999999999


Q ss_pred             hHHHHHHHHHHHHhcCcEEEEecC-----ChHHHHHHHhhhcC---eEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 006197          276 AHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKP---TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (657)
Q Consensus       276 ~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~---t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (657)
                      +|.+++...+.++..|++++++..     ++..+++.+.++++   +++.++|+++..+........             
T Consensus       231 ~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~-------------  297 (631)
T PRK07769        231 FHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPK-------------  297 (631)
T ss_pred             cCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccch-------------
Confidence            999999887778888999888752     78889999999886   789999988766543100000             


Q ss_pred             HHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc---CC---ceeeeccCCCCCCcc
Q 006197          348 LKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLTETCGPT  421 (657)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~~---~v~~~yG~tE~~~~~  421 (657)
                                      ......++        ++||.+++||+++++++.++|.+.+   |.   .+++.||+||++..+
T Consensus       298 ----------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~  353 (631)
T PRK07769        298 ----------------DGEPPLDL--------SNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFV  353 (631)
T ss_pred             ----------------hcccCcch--------hheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEE
Confidence                            00000112        4899999999999999999998876   33   599999999998765


Q ss_pred             ccccCCCc--------------------------cccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccc
Q 006197          422 TVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG  475 (657)
Q Consensus       422 ~~~~~~~~--------------------------~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~g  475 (657)
                      +.......                          ....++|+|+++.+++|+| ++++ .+++.|+.|||+++||+++.|
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd-~~~g-~~~~~ge~GEl~v~gp~v~~G  431 (631)
T PRK07769        354 STTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVD-PETA-SELPDGQIGEIWLHGNNIGTG  431 (631)
T ss_pred             eccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEc-CCCC-cCCCCCCEEEEEecCCCcccc
Confidence            54432210                          0124789999999999998 4332 355677899999999999999


Q ss_pred             cCCCchhhhcccc------------------CCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhc-C
Q 006197          476 YYKNPDLTRESII------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV-A  536 (657)
Q Consensus       476 y~~~~~~~~~~~~------------------~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~-~  536 (657)
                      ||++++.+.+.|.                  +|||+|||+|+++ +|+|+++||.+|+||+ +|++|+|.+||++|.+ |
T Consensus       432 Y~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~~  509 (631)
T PRK07769        432 YWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII-DGRNHYPQDLEYTAQEAT  509 (631)
T ss_pred             ccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-CCeeeCHHHHHHHHHhcc
Confidence            9999999988873                  3899999999995 9999999999999997 8999999999999986 8


Q ss_pred             cccce--EEEEecCC----------------------CCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHH
Q 006197          537 PIIED--IWVYGDSL----------------------KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  592 (657)
Q Consensus       537 ~~V~~--~~vv~~~~----------------------~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (657)
                      |.|.+  |+|++.++                      .+.++++|++.++...       .        ..        +
T Consensus       510 p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~-------~--------~~--------~  566 (631)
T PRK07769        510 KALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHK-------L--------DP--------Q  566 (631)
T ss_pred             ccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCcccc-------c--------cH--------H
Confidence            99998  89998775                      2468888887764200       0        11        2


Q ss_pred             HHHHHHHhCCCCC-ce-eeeEEEEecCCCCCCCCccccccccchHHHHHHHHH-HHHHHHh
Q 006197          593 ELKNAAERNKLRG-FE-HIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV-EIDQLYE  650 (657)
Q Consensus       593 ~l~~~~~~~~l~~-~~-~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~-~i~~ly~  650 (657)
                      +|.++++ +.|+. |+ .|+.+.+++.    +++|+|++|||+|++|+++|.+ .+..-|.
T Consensus       567 ~l~~~~~-~~l~~~~~~~p~~~~~v~~----~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~  622 (631)
T PRK07769        567 PIADDIR-AAIAVRHGVTVRDVLLVPA----GSIPRTSSGKIARRACRAAYLDGSLRSGYG  622 (631)
T ss_pred             HHHHHHH-HHHHHHcCCCccEEEEECC----CccccCCCcHHHHHHHHHHHHcCCCccccC
Confidence            2333332 34543 45 4778888753    2359999999999999988754 4444443

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.2e-60  Score=528.57  Aligned_cols=507  Identities=26%  Similarity=0.347  Sum_probs=403.4

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...++.++|.+.++++|+++|+++.   ++.    +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++|
T Consensus        16 ~~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~   88 (558)
T PRK12583         16 LTQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQF   88 (558)
T ss_pred             ccCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHH
Confidence            3468999999999999999999875   332    579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh-----hhhc---cc---------cccccCceEEEEecCC
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLS---PD---------CRSAQRLRVMVCFTSL  182 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~---~~---------~~~~~~~~~i~~~~~~  182 (657)
                      ||+++|++++++++..+.+++..+++.++++++|++.....     .+..   ..         ....+.+..++.....
T Consensus        89 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (558)
T PRK12583         89 ATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA  168 (558)
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCC
Confidence            99999999999999999999999999999999999764321     1100   00         0011222333333322


Q ss_pred             cHHHHHHHhhCCcceeeHHHHHhcCccC-----CccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcc
Q 006197          183 TAEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD  257 (657)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~  257 (657)
                      ..          .....|+++.......     ........++++++++|||||||.||+|.+||+++..++......+ 
T Consensus       169 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~-  237 (558)
T PRK12583        169 PP----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL-  237 (558)
T ss_pred             CC----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh-
Confidence            11          1122344443322110     0111233578899999999999999999999999998887766666 


Q ss_pred             cccCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHH
Q 006197          258 QFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL  334 (657)
Q Consensus       258 ~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~  334 (657)
                          ++..+|++++.+|++|.++... .+.++..|+++++...  ++..+++.++++++|++.++|+++..+......  
T Consensus       238 ----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--  311 (558)
T PRK12583        238 ----GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR--  311 (558)
T ss_pred             ----CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc--
Confidence                7889999999999999999876 5567888998887643  889999999999999999999998776532110  


Q ss_pred             HhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC-Cceeeecc
Q 006197          335 EELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYG  413 (657)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG  413 (657)
                                                      ...++        +++|.+++||+++++.+.+++.+.++ ..+++.||
T Consensus       312 --------------------------------~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG  351 (558)
T PRK12583        312 --------------------------------GNFDL--------SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYG  351 (558)
T ss_pred             --------------------------------cCCCc--------hhheEEEecCCCCCHHHHHHHHHHcCCcceecccc
Confidence                                            00011        38999999999999999999988875 46999999


Q ss_pred             CCCCCCccccccCCC--ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCC
Q 006197          414 LTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG  490 (657)
Q Consensus       414 ~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g  490 (657)
                      +||++.+++.+....  .....++|.|++++.+++++ +++  .+++.|+.|||+++|+.++.||++++..+...| .++
T Consensus       352 ~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~  428 (558)
T PRK12583        352 MTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDG--ATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDG  428 (558)
T ss_pred             ccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCC--CCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCC
Confidence            999998766554322  23457999999999999999 654  456677899999999999999999999988887 899


Q ss_pred             ccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHH
Q 006197          491 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKW  567 (657)
Q Consensus       491 ~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~  567 (657)
                      ||+|||+|+++++|++++.||.+|+|++ +|.+|+|.+||+.|.++|+|.+|+|++.++.   +.+++++++.++..   
T Consensus       429 ~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---  504 (558)
T PRK12583        429 WMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHA---  504 (558)
T ss_pred             CeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCC---
Confidence            9999999999999999999999999996 8999999999999999999999999996653   47888888765320   


Q ss_pred             HHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          568 AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                           .        .        ..+|++.++ ..||.|++|..++++++.      |+|++||++|++|++++.+.+
T Consensus       505 -----~--------~--------~~~i~~~~~-~~L~~~~~P~~i~~v~~l------P~t~sGK~~r~~L~~~~~~~~  554 (558)
T PRK12583        505 -----A--------S--------EEELREFCK-ARIAHFKVPRYFRFVDEF------PMTVTGKVQKFRMREISIEEL  554 (558)
T ss_pred             -----C--------C--------HHHHHHHHH-hhcccCcCCcEEEEeccC------CCCCCCCccHHHHHHHHHhhc
Confidence                 0        0        123444443 689999999999987654      999999999999999887654

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=3e-60  Score=524.96  Aligned_cols=499  Identities=19%  Similarity=0.200  Sum_probs=397.8

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      +.++.++|..+++  |+++|+++.   +      +++||.||.++++++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence            4579999988887  999999864   2      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhh----hhhhccccccccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (657)
                      |+++|++++++.+..+..++..+++.+++++++++....    ....+.+....+....++......             
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------  159 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG-------------  159 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC-------------
Confidence            999999888777777788899999999999999986431    111111111223334444332211             


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                      ...+..++.... .........++++++++|||||||.||+|++||+++...+......+     .+..+|++++.+|++
T Consensus       160 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~  233 (536)
T PRK10946        160 EHSLDDAINHPA-EDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAA  233 (536)
T ss_pred             CccHHHHhhCcc-cccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCcc
Confidence            112333333221 11222345678999999999999999999999999999888766665     788999999999999


Q ss_pred             HHHHHHH--HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM  353 (657)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (657)
                      |.+++..  .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+..........                 
T Consensus       234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-----------------  296 (536)
T PRK10946        234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR-----------------  296 (536)
T ss_pred             ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc-----------------
Confidence            9888763  5667999999988765 8889999999999999999999999887543211000                 


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccC
Q 006197          354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  433 (657)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~  433 (657)
                                             ...+++|.+++||+++++.+.+.+.+.+|+++++.||+||++..............+
T Consensus       297 -----------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~  353 (536)
T PRK10946        297 -----------------------AQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFT  353 (536)
T ss_pred             -----------------------ccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccc
Confidence                                   011489999999999999999999988899999999999976444322222223347


Q ss_pred             ccCcCc-cCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEec
Q 006197          434 TAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR  511 (657)
Q Consensus       434 ~~G~~~-~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR  511 (657)
                      ++|.|+ ++.++++++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++|++|.+++.||
T Consensus       354 ~~G~p~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR  430 (536)
T PRK10946        354 TQGRPMSPDDEVWVAD-ADGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGR  430 (536)
T ss_pred             cCCcccCCCceEEEEC-CCCC--CCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEecc
Confidence            899998 789999998 5554  55677999999999999999999999999888 689999999999999999999999


Q ss_pred             CcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHH
Q 006197          512 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  588 (657)
Q Consensus       512 ~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (657)
                      .+|+|++ +|++++|.+||+.|.+||+|.+++|++.++.   +.+++++++.++.                  ..     
T Consensus       431 ~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~------------------~~-----  486 (536)
T PRK10946        431 EKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPL------------------KA-----  486 (536)
T ss_pred             ccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCC------------------CH-----
Confidence            9999996 8999999999999999999999999987654   4678888876532                  11     


Q ss_pred             HHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          589 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       589 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                         .++++.+++..+|.|++|..+.+++..      |+|++||++|++|++++.+..
T Consensus       487 ---~~l~~~~~~~~l~~~~~P~~~~~~~~i------P~t~~GKv~r~~L~~~~~~~~  534 (536)
T PRK10946        487 ---VQLRRFLREQGIAEFKLPDRVECVDSL------PLTAVGKVDKKQLRQWLASRA  534 (536)
T ss_pred             ---HHHHHHHHhCCccccccCcEEEEeccC------CCCCCCcccHHHHHHHHHhhc
Confidence               133344433359999999999997664      999999999999999877653

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=4.3e-60  Score=520.89  Aligned_cols=495  Identities=24%  Similarity=0.316  Sum_probs=400.0

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      .++|.+++..++ .+|+++|+...   ++     +.+||.||.++++++|.+|++.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la   72 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA   72 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468999999999 99999999864   33     6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|+++..+.+++..+++.+++++++++......+......  .....++.++....             ..+
T Consensus        73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~  137 (504)
T PRK07514         73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSL  137 (504)
T ss_pred             HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccH
Confidence            999999999999999999999999999999999998766544332111  12222333332211             011


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (657)
                      .+..... ..........++++++++|||||||.||+|.+||+++...+......+     ++.++|++++.+|++|..+
T Consensus       138 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  211 (504)
T PRK07514        138 LEAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHG  211 (504)
T ss_pred             HHhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHH
Confidence            1111111 111122344678999999999999999999999999999887766655     7888999999999999999


Q ss_pred             HHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCC
Q 006197          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK  358 (657)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (657)
                      +.. .+.++..|+++++.+. ++..+++.+  .++|++.++|.++..+.....                           
T Consensus       212 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~---------------------------  262 (504)
T PRK07514        212 LFVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR---------------------------  262 (504)
T ss_pred             HHHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC---------------------------
Confidence            875 5667999999998876 888898888  479999999999988763210                           


Q ss_pred             CCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcC
Q 006197          359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV  438 (657)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~  438 (657)
                             .+.        ...+++|.+++||+++++++.+.+.+.++.++++.||+||++........ .....+++|.|
T Consensus       263 -------~~~--------~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~G~~  326 (504)
T PRK07514        263 -------LTR--------EAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYD-GERRAGTVGFP  326 (504)
T ss_pred             -------CCc--------ccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCcc-ccccCcccccC
Confidence                   000        01148999999999999999999999889999999999999865543322 22334789999


Q ss_pred             ccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecCcceee
Q 006197          439 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIK  517 (657)
Q Consensus       439 ~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~  517 (657)
                      ++++++++++ ++++ .+++.|+.|||+++|+.++.||++++..+.+.| .+|||+|||+++++++|.+++.||.+|+|+
T Consensus       327 ~~~~~v~i~d-~~~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~  404 (504)
T PRK07514        327 LPGVSLRVTD-PETG-AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLII  404 (504)
T ss_pred             CCCcEEEEEE-CCCC-CCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEE
Confidence            9999999998 4443 456677899999999999999999999999888 589999999999999999999999999999


Q ss_pred             cCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHH
Q 006197          518 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  594 (657)
Q Consensus       518 ~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  594 (657)
                      + +|.+|+|.+||+++.++++|.+++|++.++.   +.+++++++.++..          .      +        .+.+
T Consensus       405 ~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------~------~--------~~~l  459 (504)
T PRK07514        405 S-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAA----------L------D--------EAAI  459 (504)
T ss_pred             e-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCC----------C------C--------HHHH
Confidence            6 8999999999999999999999999997653   46888888775420          0      1        1233


Q ss_pred             HHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          595 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       595 ~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                      .+.++ +.|+++++|..++++++.      |+|.+||++|++|+++|++.
T Consensus       460 ~~~~~-~~l~~~~~p~~i~~v~~~------p~t~~gK~~r~~l~~~~~~~  502 (504)
T PRK07514        460 LAALK-GRLARFKQPKRVFFVDEL------PRNTMGKVQKNLLREQYADL  502 (504)
T ss_pred             HHHHH-hhcccCCCCcEEEEeccC------CCCCCcceeHHHHHHHHHhh
Confidence            44443 578999999999997654      99999999999999888765

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.4e-60  Score=520.67  Aligned_cols=489  Identities=21%  Similarity=0.281  Sum_probs=395.7

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      +.++.++|.++++++|+++|+.+.    +     +.+||.||.+++.++|.+|.+.|+++|++|+++++|++++++++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVYR----D-----QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA   71 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEEC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            457899999999999999999874    3     5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|+++..+.+++.++++.+++++++++.+.......        ....+..+.....             .+
T Consensus        72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~-------------~~  130 (497)
T PRK06145         72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL--------ETPKIVIDAAAQA-------------DS  130 (497)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc--------ccceEEecCcccc-------------hh
Confidence            99999999999999999999999999999999998765433210        0111222211100             01


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (657)
                      ..+.. ............++++++++|||||||.||+|++||+++...+......+     ++..+++++..+|++|.++
T Consensus       131 ~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  204 (497)
T PRK06145        131 RRLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGA  204 (497)
T ss_pred             HHHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhH
Confidence            11111 10111112234678999999999999999999999999987665544444     6889999999999999988


Q ss_pred             HHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCC
Q 006197          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK  358 (657)
Q Consensus       281 ~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (657)
                      +.. .+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++.....                          
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~--------------------------  258 (497)
T PRK06145        205 FDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR--------------------------  258 (497)
T ss_pred             HHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--------------------------
Confidence            865 4567899999888775 899999999999999999999999887642110                          


Q ss_pred             CCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC-ccccCccC
Q 006197          359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG  436 (657)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~~G  436 (657)
                              ...+        .+++|.+++||+++++.+.+.+.+.+ +.++++.||+||+++.++....+. ....+++|
T Consensus       259 --------~~~~--------~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G  322 (497)
T PRK06145        259 --------DRFD--------LDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTG  322 (497)
T ss_pred             --------cccc--------cccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcc
Confidence                    0001        13899999999999999999998887 678999999999998666544322 23347899


Q ss_pred             cCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCccee
Q 006197          437 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  516 (657)
Q Consensus       437 ~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i  516 (657)
                      .|++++++++++ +++.  +++.++.|||+++|++++.||+++++.+.+.|.++||+|||+++++.+|.+++.||.+|+|
T Consensus       323 ~~~~~~~~~i~~-~~~~--~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i  399 (497)
T PRK06145        323 RALAHVEIRIAD-GAGR--WLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMI  399 (497)
T ss_pred             cCCCCceEEEEC-CCCC--CCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEeccccceE
Confidence            999999999998 6554  4456789999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHH
Q 006197          517 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  593 (657)
Q Consensus       517 ~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (657)
                      ++ +|.++++.+||+.|.++|+|.+++|++.++.   +.+++++++.+..        ..        .        .+.
T Consensus       400 ~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~--------~--------~~~  454 (497)
T PRK06145        400 IS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGA--------TL--------T--------LEA  454 (497)
T ss_pred             Ee-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCC--------CC--------C--------HHH
Confidence            97 8999999999999999999999999997654   4788888886532        00        0        123


Q ss_pred             HHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          594 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       594 l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                      |.++++ +.|+.|++|..+.++++.      |+|++||++|++|+++++
T Consensus       455 l~~~~~-~~l~~~~~p~~i~~v~~i------P~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        455 LDRHCR-QRLASFKVPRQLKVRDEL------PRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             HHHHHH-HhhhcCCCCCEEEEeccC------CCCCcccccHHHHHHHhc
Confidence            444443 578999999999987664      999999999999998754

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1e-58  Score=538.64  Aligned_cols=569  Identities=19%  Similarity=0.286  Sum_probs=444.2

Q ss_pred             CCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 006197           34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (657)
Q Consensus        34 ~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e  113 (657)
                      +|.+ +...++.++|.+.++++|+++|+...   . ..+.|+++||+|+.+++.++|.+|++.|+++||+|+|+++|+++
T Consensus       420 ~~~~-~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~E  494 (1452)
T PTZ00297        420 YNPL-AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRN  494 (1452)
T ss_pred             CCCc-ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Confidence            4444 44569999999999999999999642   1 12346789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcH-HHHHHHhh
Q 006197          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA-EQKEMAVQ  192 (657)
Q Consensus       114 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~  192 (657)
                      |+++.+||+.+|++.+|+++  +.+++.++++.++++++|++.+....+.+...   ..++.|+++++... ........
T Consensus       495 wvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~  569 (1452)
T PTZ00297        495 IVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARD  569 (1452)
T ss_pred             HHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCccccccccccc
Confidence            99999999999999999975  36789999999999999999888776655322   36788888864211 00000011


Q ss_pred             CCcceeeHHHHHhcCccCCcc-CCCCCCCceEEEEe---cCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcE
Q 006197          193 TGIKPYSWDEFLHLGKVNEME-ILPPQPFNICTIMY---TSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  268 (657)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~---TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~  268 (657)
                      .+....+|++++..+.....+ .....++|++.|+|   ||||||.||||++||+++++++..+....  ......++|+
T Consensus       570 ~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~--~~~~~~~~D~  647 (1452)
T PTZ00297        570 LNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTG--VLPSSFKKHL  647 (1452)
T ss_pred             CCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhc--cccCCCCCCE
Confidence            133466799998876322211 22346788999986   99999999999999999999988764421  0013467899


Q ss_pred             EEEecChhHHHHHHHHHHHHhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006197          269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (657)
Q Consensus       269 ~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (657)
                      +++++|++|+++....+.+++.|++++..  ++..+++.|++++||+++++|.+++.+.+.+.+.....+.+.++++++.
T Consensus       648 ~Ls~LPLaHI~er~~~~~~l~~G~~I~~~--d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A  725 (1452)
T PTZ00297        648 MVHFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERA  725 (1452)
T ss_pred             EEEechHHHHHHHHHHHHHHHcCCEEEeC--CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            99999999999977777789999998753  7899999999999999999999999999988887777777888888774


Q ss_pred             HHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCC--CCCHHHHHHHHHhcCCceeeeccCCCCCCccccccC
Q 006197          349 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA--PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP  426 (657)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~--~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~  426 (657)
                      ...............++++.+.++++++.+|.++|.+++||+  +++..+..      ++++..+||+||+.   +.+..
T Consensus       726 ~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~~  796 (1452)
T PTZ00297        726 FQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPSE  796 (1452)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecCC
Confidence            322111000123456689999999999999999999999984  55533332      67788999999943   33333


Q ss_pred             CCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcE
Q 006197          427 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  506 (657)
Q Consensus       427 ~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l  506 (657)
                      +...   ..|.|+|+++++|.++++.+..    +..|||++++       +++++.|.+. .+||+         +||+|
T Consensus       797 ~~~~---~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr~-------~kdpe~T~e~-~~gW~---------~dG~L  852 (1452)
T PTZ00297        797 GVFC---VDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLAK-------KGEPRRTLPI-AAQWK---------RDRTL  852 (1452)
T ss_pred             CCcc---cCCeecCceEEEEcccccccCC----CCCCeEEEEE-------CCChHHHHHh-hCcCc---------cCCeE
Confidence            3322   2399999999999984443211    2369999964       5788888873 36664         68999


Q ss_pred             EEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEEecChhhHH-HHHHHCCCCc--------cH
Q 006197          507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTK-KWAYSNGHAG--------SF  577 (657)
Q Consensus       507 ~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~~~~~a~v~~~~~~~~-~~~~~~~~~~--------~~  577 (657)
                      +|.||++|+||+++|++|.|..||+.+.++|.|.+++|+|...+. ++|+|+++.+... .|...++...        +.
T Consensus       853 ~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~-lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~  931 (1452)
T PTZ00297        853 RLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGW  931 (1452)
T ss_pred             EEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc-eEEEEEeCHHHHHHHHHHHcCCCccccccccCCH
Confidence            999999999999999999999999999999999999999987444 9999999999998 9998877531        34


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhh
Q 006197          578 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL  652 (657)
Q Consensus       578 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~ly~~~  652 (657)
                      .+++..  ..+.+.+.+.+..+.+.+..+.+++.+++++++|+++...+||+.|++|+.+.+.|+++||+||.+.
T Consensus       932 ~el~~~--~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~~~ 1004 (1452)
T PTZ00297        932 TELVAY--ASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSDV 1004 (1452)
T ss_pred             HHHHHh--HHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhccc
Confidence            444421  1223444444444445688899999999999999999999999999999999999999999999964

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.4e-60  Score=572.86  Aligned_cols=510  Identities=23%  Similarity=0.239  Sum_probs=405.4

Q ss_pred             CCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006197           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (657)
Q Consensus        36 ~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~  115 (657)
                      ..++..+++.+.|+++++++|+++|+++.   ++     +++||+||.++++++|++|++ ++++||+|+++++|+++++
T Consensus       609 ~~~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~  679 (1146)
T PRK08633        609 SRKEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGA  679 (1146)
T ss_pred             hhcCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHH
Confidence            44566788999999999999999999854   33     579999999999999999987 4899999999999999999


Q ss_pred             HHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhcccc-ccccCceEEEEecCCcHHHHHHHhhCC
Q 006197          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-RSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (657)
Q Consensus       116 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (657)
                      ++++||+++|++++|+++..+.+++.++++.+++++++++++..+.+..... ...+....++..++.....        
T Consensus       680 ~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  751 (1146)
T PRK08633        680 LANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKI--------  751 (1146)
T ss_pred             HHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhcccc--------
Confidence            9999999999999999999999999999999999999999887765532110 0112223344433321100        


Q ss_pred             cceeeHHHHHhcCc-cC----CccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEE
Q 006197          195 IKPYSWDEFLHLGK-VN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (657)
Q Consensus       195 ~~~~~~~~l~~~~~-~~----~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (657)
                      .....+.+...... ..    ........++|+++++|||||||.||+|.+||+++..........+     ++.++|++
T Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~  826 (1146)
T PRK08633        752 SKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVI  826 (1146)
T ss_pred             chhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEE
Confidence            00001111111100 00    0001345679999999999999999999999999999888776666     78889999


Q ss_pred             EEecChhHHHHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006197          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (657)
Q Consensus       270 l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (657)
                      ++.+|++|.+++.. .+.++..|+++++.+.  ++..+++.++++++|++.++|++++.+.+....              
T Consensus       827 l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------  892 (1146)
T PRK08633        827 LSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL--------------  892 (1146)
T ss_pred             EEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc--------------
Confidence            99999999999876 6778999999888764  889999999999999999999999887642110              


Q ss_pred             HHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccC
Q 006197          347 ALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP  426 (657)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~  426 (657)
                                          +        +...+++|.+++||+++++++.+.+++.+|.++++.||+||+++.++....
T Consensus       893 --------------------~--------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~  944 (1146)
T PRK08633        893 --------------------H--------PLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLP  944 (1146)
T ss_pred             --------------------C--------cccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecC
Confidence                                0        011248999999999999999999999899999999999999887665432


Q ss_pred             CC---------ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccC----Cccc
Q 006197          427 DE---------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFH  493 (657)
Q Consensus       427 ~~---------~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~----g~~~  493 (657)
                      +.         ....+++|+|+|+++++|+| ++++ .+++.|+.|||+++|++++.||+++++.+.+.+.+    |||+
T Consensus       945 ~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~ 1022 (1146)
T PRK08633        945 DVLAADFKRQTGSKEGSVGMPLPGVAVRIVD-PETF-EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYV 1022 (1146)
T ss_pred             cccccccccccCCCCCCccccCCCCEEEEEc-CCCC-ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEE
Confidence            21         12357899999999999998 4433 45567789999999999999999999999988877    9999


Q ss_pred             cCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCc--ccceEEEEecCCC---CeEEEEEecChhhHHHHH
Q 006197          494 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP--IIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWA  568 (657)
Q Consensus       494 TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~--~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~  568 (657)
                      |||+|++|+||++++.||.+|+||+ +|++|+|.+||++|.+||  .+.+|+|++.+++   +.++++++....      
T Consensus      1023 TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~------ 1095 (1146)
T PRK08633       1023 TGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAE------ 1095 (1146)
T ss_pred             CCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCcc------
Confidence            9999999999999999999999997 899999999999999999  5678999987654   467777776321      


Q ss_pred             HHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          569 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                                   .        .+++++.+.+..+|+|++|..++++++.      |+|++||++|++|++..++++
T Consensus      1096 -------------~--------~~~l~~~~~~~~l~~~~~P~~i~~~~~i------P~t~~GKi~r~~L~~~~~~~~ 1145 (1146)
T PRK08633       1096 -------------D--------VEELKRAIKESGLPNLWKPSRYFKVEAL------PLLGSGKLDLKGLKELALALL 1145 (1146)
T ss_pred             -------------C--------HHHHHHHHHhcCCCcccCCcEEEEecCc------CCCCCCCCcHHHHHHHHHHhc
Confidence                         1        1223333334579999999999987664      999999999999998876653

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=4.3e-60  Score=522.40  Aligned_cols=497  Identities=23%  Similarity=0.251  Sum_probs=401.2

Q ss_pred             cHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 006197           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (657)
Q Consensus        43 ~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~  122 (657)
                      +++++|+..++++|+++|+.+.   +      +++||+||.+++.++|++|++.|+.+||+|+++++|++++++++|||+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~   71 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA   71 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4789999999999999999875   3      579999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHH
Q 006197          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (657)
Q Consensus       123 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (657)
                      ++|++++|+++..+.+++..+++.+++++++++....+.+...... .+....++.+.+.....     ........|++
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  145 (515)
T TIGR03098        72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPG-CHDLRTLILVGEPAHAS-----EGGGESPSWPK  145 (515)
T ss_pred             hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhc-ccccceEEEecCccccc-----CCccccccHHH
Confidence            9999999999999999999999999999999988766544332221 12334444444322100     01122335665


Q ss_pred             HHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH
Q 006197          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (657)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  282 (657)
                      +.....  .........+++++++|||||||.||+|.+||+++...+......+     .+..+|++++.+|++|.+++.
T Consensus       146 ~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~  218 (515)
T TIGR03098       146 LLALGD--ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFN  218 (515)
T ss_pred             hhcccc--ccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHH
Confidence            554321  1122334568899999999999999999999999998888766655     688999999999999999988


Q ss_pred             HHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCC
Q 006197          283 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQRE  361 (657)
Q Consensus       283 ~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (657)
                      ..+.++..|+++++.+. ++..+.+.++++++|++.++|+++..|.+....                             
T Consensus       219 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------  269 (515)
T TIGR03098       219 QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-----------------------------  269 (515)
T ss_pred             HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-----------------------------
Confidence            88889999999998876 899999999999999999999999887542000                             


Q ss_pred             cchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCCccccCccCcCcc
Q 006197          362 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  440 (657)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~  440 (657)
                                    ...++++|.++++|+++++++.+.+.+.+ +..+++.||+||++..............+++|.|++
T Consensus       270 --------------~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~  335 (515)
T TIGR03098       270 --------------ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIP  335 (515)
T ss_pred             --------------CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecC
Confidence                          00114899999999999999999999987 788999999999986554433322344589999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc------------CCccccCceEEEcCCCcEEE
Q 006197          441 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------DGWFHTGDIGQILPNGVVKI  508 (657)
Q Consensus       441 ~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~------------~g~~~TGDl~~~~~~G~l~i  508 (657)
                      ++++++++ +++.  +++.++.|||+++|+.++.||+++++.+...|.            ++||+|||+|+++.+|.+++
T Consensus       336 ~~~~~i~~-~~~~--~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~  412 (515)
T TIGR03098       336 NAEVLVLR-EDGS--ECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYF  412 (515)
T ss_pred             CCEEEEEC-CCCC--CCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEE
Confidence            99999998 6554  345678999999999999999999988766552            34899999999999999999


Q ss_pred             EecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHH
Q 006197          509 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  585 (657)
Q Consensus       509 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (657)
                      .||.+|+|++ +|.+|+|.+||+.|.+||.|.+|+|++.++.   +.++++++...+..          .      .   
T Consensus       413 ~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~----------~------~---  472 (515)
T TIGR03098       413 VGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEE----------L------D---  472 (515)
T ss_pred             Eeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCC----------C------C---
Confidence            9999999997 7999999999999999999999999996643   47777777544320          0      1   


Q ss_pred             HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197          586 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  639 (657)
Q Consensus       586 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~  639 (657)
                           .+.+++.++ ++|+.+++|..++++++.      |+|.+||++|++|++
T Consensus       473 -----~~~l~~~l~-~~l~~~~~p~~i~~v~~i------P~t~~GK~~r~~L~~  514 (515)
T TIGR03098       473 -----RAALLAECR-ARLPNYMVPALIHVRQAL------PRNANGKIDRKALAA  514 (515)
T ss_pred             -----HHHHHHHHH-hhCccccCCCEEEEeccC------CCCCCCCCcHHHhcc
Confidence                 123344443 679999999999997664      999999999999864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.5e-60  Score=522.21  Aligned_cols=497  Identities=23%  Similarity=0.240  Sum_probs=401.7

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..|+.++|.++++++|+++|+++.   +      +.+||.||.+.++++|..|.+.|+++|++|+++++|+++++++++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la   81 (524)
T PRK06188         11 GATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGA   81 (524)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            558999999999999999999874   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcch-hhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK-KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      |+++|+++++++|..+.+++..++..++++.++++.. ....... ..........++.+.......            .
T Consensus        82 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~  148 (524)
T PRK06188         82 AQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALA-LLARVPSLKHVLTLGPVPDGV------------D  148 (524)
T ss_pred             HHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHH-HhhhcCCceEEEEeCCccchh------------h
Confidence            9999999999999999999999999999999999876 3322211 111223334455444332100            0


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (657)
                      ..+....... ........++++++++|||||||.||+|.+||.++...+......+     .+..++++++.+|++|.+
T Consensus       149 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~  222 (524)
T PRK06188        149 LLAAAAKFGP-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHAG  222 (524)
T ss_pred             HHHhhhccCc-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhhh
Confidence            0000000000 1111122456699999999999999999999999999888776666     788999999999999988


Q ss_pred             HHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCC
Q 006197          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK  358 (657)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (657)
                      ++. .+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.....                         
T Consensus       223 g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-------------------------  276 (524)
T PRK06188        223 GAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR-------------------------  276 (524)
T ss_pred             hHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-------------------------
Confidence            864 4667889999999876 8999999999999999999999998876531100                         


Q ss_pred             CCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC-----ccccC
Q 006197          359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----MCMVG  433 (657)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-----~~~~~  433 (657)
                                       ...++++|.+++||+++++.....+.+.++..+++.||+||++..++......     ....+
T Consensus       277 -----------------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~  339 (524)
T PRK06188        277 -----------------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLT  339 (524)
T ss_pred             -----------------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCC
Confidence                             00124899999999999999988888888999999999999977666543322     23447


Q ss_pred             ccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCc
Q 006197          434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  513 (657)
Q Consensus       434 ~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~  513 (657)
                      ++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||++++..+...|.+|||+|||+++++++|.+++.||.+
T Consensus       340 ~~G~p~~g~~v~i~~-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~  416 (524)
T PRK06188        340 SCGRPTPGLRVALLD-EDGR--EVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVDRKK  416 (524)
T ss_pred             ccccccCCcEEEEEc-CCCC--CCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEEEeccc
Confidence            899999999999998 6654  4556789999999999999999999999988999999999999999999999999999


Q ss_pred             ceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHH
Q 006197          514 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  590 (657)
Q Consensus       514 d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (657)
                      |+|++ +|.+|+|.+||+.|.++++|.+++|++.++.   +.++++++++++..          .      .        
T Consensus       417 ~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------~------~--------  471 (524)
T PRK06188        417 DMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAA----------V------D--------  471 (524)
T ss_pred             cceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCC----------C------C--------
Confidence            99996 8999999999999999999999999987654   47888888775420          0      0        


Q ss_pred             HHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          591 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       591 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                      .++|+++++ ..++.+++|..|+++++.      |+|++||++|++|+++|.+
T Consensus       472 ~~~l~~~~~-~~l~~~~~p~~i~~v~~~------P~t~~gKi~r~~L~~~~~~  517 (524)
T PRK06188        472 AAELQAHVK-ERKGSVHAPKQVDFVDSL------PLTALGKPDKKALRARYWE  517 (524)
T ss_pred             HHHHHHHHH-HhcccCCCCcEEEEecCC------CCCccccccHHHHHHHHHh
Confidence            123444443 678999999999997654      9999999999999998844

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1e-59  Score=524.51  Aligned_cols=509  Identities=26%  Similarity=0.335  Sum_probs=404.3

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      ....+|.++|.+.++++|+++|+++.   ++.    +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~   85 (559)
T PRK08315         13 LLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQ   85 (559)
T ss_pred             hhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            44558999999999999999999875   433    67999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh-----hhhc---cc---------cccccCceEEEEecC
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLS---PD---------CRSAQRLRVMVCFTS  181 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~---~~---------~~~~~~~~~i~~~~~  181 (657)
                      |||+++|++++|++|..+.+++..++..+++++++++.....     .+.+   ..         ....+..+.++..+.
T Consensus        86 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (559)
T PRK08315         86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD  165 (559)
T ss_pred             HHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc
Confidence            999999999999999999999999999999999999875421     1100   00         000122233443332


Q ss_pred             CcHHHHHHHhhCCcceeeHHHHHhcCccC-----CccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhc
Q 006197          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL  256 (657)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~  256 (657)
                      ..          ......+.++.......     .........+++++++|||||||.||+|.+||+++..++......+
T Consensus       166 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~  235 (559)
T PRK08315        166 EK----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM  235 (559)
T ss_pred             cC----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc
Confidence            11          01123444444322110     1112234578899999999999999999999999998888776666


Q ss_pred             ccccCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHH
Q 006197          257 DQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  333 (657)
Q Consensus       257 ~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~  333 (657)
                           ++.++|+++..+|++|.+++.. .+.++..|+++++...  ++..+++.++++++|+++++|+++..+...... 
T Consensus       236 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~-  309 (559)
T PRK08315        236 -----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDF-  309 (559)
T ss_pred             -----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc-
Confidence                 7899999999999999999875 5667999999885543  899999999999999999999999776532110 


Q ss_pred             HHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCc-eeeec
Q 006197          334 LEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGY  412 (657)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-v~~~y  412 (657)
                                                       +..+        ++++|.++++|++++..+.+.+.+.++.. +++.|
T Consensus       310 ---------------------------------~~~~--------~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~Y  348 (559)
T PRK08315        310 ---------------------------------ARFD--------LSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAY  348 (559)
T ss_pred             ---------------------------------CCCC--------chhhheeEecCCCCCHHHHHHHHHHcCCcceeEEE
Confidence                                             0001        14899999999999999999998888654 99999


Q ss_pred             cCCCCCCccccccCCC--ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cC
Q 006197          413 GLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID  489 (657)
Q Consensus       413 G~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~  489 (657)
                      |+||++.+++......  .....++|.|+++++++++| ++.+ .+++.|+.|||+|+|+.++.||+++++.+...| .+
T Consensus       349 G~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~  426 (559)
T PRK08315        349 GMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETG-ETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDAD  426 (559)
T ss_pred             cccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccC-CcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCC
Confidence            9999988766554332  23357999999999999999 5522 345677899999999999999999999998888 78


Q ss_pred             CccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHH
Q 006197          490 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  566 (657)
Q Consensus       490 g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~  566 (657)
                      +||+|||+++++++|.++++||.+|+|++ +|.+|++.+||+.|.++|+|.+++|++..+.   +.++++|++..+..  
T Consensus       427 ~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--  503 (559)
T PRK08315        427 GWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGAT--  503 (559)
T ss_pred             CCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCC--
Confidence            99999999999999999999999999996 7999999999999999999999999997654   46778888765320  


Q ss_pred             HHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          567 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                            .        .        .+.+++++. +.+|.|++|..++++++.      |+|++||++|.+|++++..+.
T Consensus       504 ------~--------~--------~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GK~~r~~L~~~~~~~~  553 (559)
T PRK08315        504 ------L--------T--------EEDVRDFCR-GKIAHYKIPRYIRFVDEF------PMTVTGKIQKFKMREMMIEEL  553 (559)
T ss_pred             ------C--------C--------HHHHHHHHH-hhcccccCCcEEEEcccC------CCCCCCceeHHHHHHHHHhhh
Confidence                  0        1        122333333 679999999999997654      999999999999999876643

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-59  Score=520.54  Aligned_cols=507  Identities=22%  Similarity=0.252  Sum_probs=397.5

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      .++.++|+++++++|++++++..   ..  +.++++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~   84 (542)
T PRK06018         10 LLCHRIIDHAARIHGNREVVTRS---VE--GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGI   84 (542)
T ss_pred             CCHHHHHHHHHHhCCCceEEEee---cc--CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence            48999999999999999999853   11  23478999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006197          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (657)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (657)
                      +++|++++|+++.++.+++..+++.++++.++++.+..+.+.+... .......++...+.....    .........+.
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  159 (542)
T PRK06018         85 MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIAD-KLPSVERYVVLTDAAHMP----QTTLKNAVAYE  159 (542)
T ss_pred             HhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHh-hCCCccEEEEeccccccc----ccCccccccHH
Confidence            9999999999999999999999999999999999877655533222 123344444443221100    00001223455


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHH-Hhh-hhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA-TFV-SGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (657)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~-~~~-~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (657)
                      +++..... .........+++++++|||||||.||+|++||++++ ... ......+     ++..+|+++..+|++|.+
T Consensus       160 ~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h~~  233 (542)
T PRK06018        160 EWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFHAN  233 (542)
T ss_pred             HHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHHHh
Confidence            55544321 112233466789999999999999999999999743 222 2222233     678899999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCC
Q 006197          280 DRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGY  357 (657)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (657)
                      ++...+.++..|+++++...  ++..+++.++++++|++.++|+++..+.+......                       
T Consensus       234 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-----------------------  290 (542)
T PRK06018        234 SWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG-----------------------  290 (542)
T ss_pred             hhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC-----------------------
Confidence            88877778999999888653  78899999999999999999999998875432110                       


Q ss_pred             CCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC---------
Q 006197          358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---------  428 (657)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~---------  428 (657)
                                 .        ..+++|.++++|+++++++.++|++ ++.++++.||+||++.+++.+....         
T Consensus       291 -----------~--------~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  350 (542)
T PRK06018        291 -----------L--------KLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDA  350 (542)
T ss_pred             -----------C--------CcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCchh
Confidence                       0        1148999999999999999999999 8999999999999997765432111         


Q ss_pred             -ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcE
Q 006197          429 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV  506 (657)
Q Consensus       429 -~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l  506 (657)
                       .....++|.|.++++++|++ +++...+.+.+..|||+++|++++.||++..   ...+ .+|||+|||+++++++|++
T Consensus       351 ~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~~~g~~  426 (542)
T PRK06018        351 RLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYM  426 (542)
T ss_pred             hhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEcCCccE
Confidence             01235789999999999999 7776666554568999999999999999832   2223 6899999999999999999


Q ss_pred             EEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhcc
Q 006197          507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  583 (657)
Q Consensus       507 ~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (657)
                      ++.||.+|+|++ +|.+|++.+||+.+.+||+|.+|+|++.++.   +.+.++|++.++..        .        . 
T Consensus       427 ~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~-  488 (542)
T PRK06018        427 RITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGET--------A--------T-  488 (542)
T ss_pred             EEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCC--------C--------C-
Confidence            999999999996 8999999999999999999999999997654   46777877765420        0        1 


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          584 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       584 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                             .+.+.++++ ..++.|++|..+.++++.      |+|++||++|++|+++|.+
T Consensus       489 -------~~~l~~~~~-~~l~~~~~P~~i~~v~~i------P~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        489 -------REEILKYMD-GKIAKWWMPDDVAFVDAI------PHTATGKILKTALREQFKD  534 (542)
T ss_pred             -------HHHHHHHHH-hhCccccCCcEEEEeccC------CCCCcchhhHHHHHHHHhc
Confidence                   123344443 579999999999997654      9999999999999998866

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=6.3e-60  Score=529.87  Aligned_cols=501  Identities=18%  Similarity=0.216  Sum_probs=376.2

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCC---CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~---~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~  117 (657)
                      ..++.++++++++++|+++|+++.   +.   ..+.++.+||+||.++++++|++|.+. +++||+|+++++|+++++++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~  108 (612)
T PRK12476         33 GTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAG  108 (612)
T ss_pred             cCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHH
Confidence            468999999999999999999875   32   123456899999999999999999986 99999999999999999999


Q ss_pred             HHHHHhcCCEEEec-cCCCC--hhHHHHHHhccCceEEEEcchhhhhhhccccccc-cCceEEEEecCCcHHHHHHHhhC
Q 006197          118 MEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQT  193 (657)
Q Consensus       118 ~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~  193 (657)
                      +|||+++|++++|+ ++.++  .+++.++++.++++++|++......+........ .....++..+....         
T Consensus       109 ~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------  179 (612)
T PRK12476        109 FFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD---------  179 (612)
T ss_pred             HHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc---------
Confidence            99999999999999 57766  7899999999999999998876654422111000 01123333332110         


Q ss_pred             CcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCC-CCCCcEEEEe
Q 006197          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLSF  272 (657)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~~  272 (657)
                                  .. ..........++++++|+|||||||.||||++||+++.+++......+     . +.+++++++.
T Consensus       180 ------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~~  241 (612)
T PRK12476        180 ------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGVSW  241 (612)
T ss_pred             ------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEEEe
Confidence                        00 001111234578999999999999999999999999988776654444     5 6788999999


Q ss_pred             cChhHHHHHHHHHHHHhcCcEEEEecC-----ChHHHHHHHh--hhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 006197          273 LPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (657)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  345 (657)
                      +|++|.+++...+.++..|++++++..     ++..+++.+.  ++++++++.+|+++..+........           
T Consensus       242 ~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~-----------  310 (612)
T PRK12476        242 LPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPA-----------  310 (612)
T ss_pred             CCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChh-----------
Confidence            999999998776666556666555532     6788999995  5899999999998887754210000           


Q ss_pred             HHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc---CC---ceeeeccCCCCCC
Q 006197          346 DALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLTETCG  419 (657)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~~---~v~~~yG~tE~~~  419 (657)
                                         ..+.+++        +++| +++||+++++++.+.+.+.+   |.   .+++.||+||++.
T Consensus       311 -------------------~~~~~~l--------~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~  362 (612)
T PRK12476        311 -------------------EGDDIDL--------SNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATL  362 (612)
T ss_pred             -------------------hhcCcch--------hHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhhe
Confidence                               0000112        3889 99999999999999998876   44   4899999999886


Q ss_pred             ccccccCCCc--------------------------cccCccCcCccCeeEEEeecCC-CCCCCCCCCCCceEEEccCCc
Q 006197          420 PTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCVRGKTL  472 (657)
Q Consensus       420 ~~~~~~~~~~--------------------------~~~~~~G~~~~~~~~~iv~~~~-~~~~~~~~~~~GEl~v~g~~~  472 (657)
                      .++.......                          ...+++|+|+++++++|+| ++ +.  +++.|+.|||+++|+++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~--~~~~g~~GEl~v~g~~v  439 (612)
T PRK12476        363 FVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGA--ELPDGEVGEIWLHGDNI  439 (612)
T ss_pred             eeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCc--CCCCCCEEEEEEcCCcc
Confidence            5543322110                          0125889999999999999 55 44  45567899999999999


Q ss_pred             ccccCCCchhhhcccc-------------------CCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHH
Q 006197          473 FSGYYKNPDLTRESII-------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY  533 (657)
Q Consensus       473 ~~gy~~~~~~~~~~~~-------------------~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l  533 (657)
                      +.||+++++.|.+.|.                   ++||+|||+|+++ +|+|+++||.+|+|++ +|++|+|.+||++|
T Consensus       440 ~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~eIE~~l  517 (612)
T PRK12476        440 GRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQDIEATV  517 (612)
T ss_pred             cccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHHHHHHH
Confidence            9999999999988873                   2599999999984 9999999999999997 89999999999999


Q ss_pred             h-cCcccce--EEEEecCC--CCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCcee
Q 006197          534 C-VAPIIED--IWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEH  608 (657)
Q Consensus       534 ~-~~~~V~~--~~vv~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~  608 (657)
                      . .||.|.+  ++|++.++  .+.+++++++.++...       .        ..    +.+.+.+++.+..    .|++
T Consensus       518 ~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~-------~--------~~----~~l~~~~~~~l~~----~~~~  574 (612)
T PRK12476        518 AEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSR-------A--------DP----APAIDAIRAAVSR----RHGL  574 (612)
T ss_pred             HHhcccccCCcEEEEEecCCCcceEEEEEEecCCccc-------c--------cH----HHHHHHHHHHHHH----hhCC
Confidence            7 4899999  67777654  3588888887754200       0        11    2223333333321    2555


Q ss_pred             -eeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          609 -IKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       609 -p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                       |+.+.+++.    +.+|+|++||++|++|+++|.+
T Consensus       575 ~p~~v~~v~~----~~lP~t~~GKi~r~~L~~~~~~  606 (612)
T PRK12476        575 AVADVRLVPA----GAIPRTTSGKLARRACRAQYLD  606 (612)
T ss_pred             cceEEEEECC----CCcCcCCchHHHHHHHHHHHHc
Confidence             577888753    2359999999999999998754

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.2e-59  Score=523.03  Aligned_cols=511  Identities=23%  Similarity=0.300  Sum_probs=392.8

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ..++.++|..+++++|+++|+++.    +     +.+||.||.++++++|.+|.+. |+++||+|+++++|++++++++|
T Consensus        23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l   93 (562)
T PRK12492         23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF   93 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            458999999999999999999763    3     5899999999999999999985 99999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEec--CCcHHHHHH--------
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT--SLTAEQKEM--------  189 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~--------  189 (657)
                      ||+++|++++++++.++.+++.++++.++++++++++............  .....++...  +.......+        
T Consensus        94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
T PRK12492         94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDK  171 (562)
T ss_pred             HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhccccccc
Confidence            9999999999999999999999999999999999987544333221111  0011111100  000000000        


Q ss_pred             -----HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhccccc----
Q 006197          190 -----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE----  260 (657)
Q Consensus       190 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~----  260 (657)
                           ..........|.++................+++++++|||||||.||+|+++|+++..+.......+....    
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~  251 (562)
T PRK12492        172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ  251 (562)
T ss_pred             ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence                 00000122345555543322222223456789999999999999999999999999877665544331110    


Q ss_pred             CCCCC-CcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHh
Q 006197          261 DKMTV-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (657)
Q Consensus       261 ~~~~~-~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~  336 (657)
                      ..... ++++++.+|++|.+++.. .+..+..|.+.++...  ++..++..++++++|++.++|+++..+.+...     
T Consensus       252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----  326 (562)
T PRK12492        252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG-----  326 (562)
T ss_pred             ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC-----
Confidence            00223 357889999999999875 4445778887766543  78899999999999999999999988764211     


Q ss_pred             hchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCC
Q 006197          337 LRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE  416 (657)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE  416 (657)
                                                   ....+        ++++|.+++||+++++++.+.|.+.+++++++.||+||
T Consensus       327 -----------------------------~~~~~--------~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE  369 (562)
T PRK12492        327 -----------------------------FKDLD--------FSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTE  369 (562)
T ss_pred             -----------------------------ccccc--------ccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccc
Confidence                                         00011        14899999999999999999999888999999999999


Q ss_pred             CCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccC
Q 006197          417 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  495 (657)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TG  495 (657)
                      ++..++.+........+++|.|+++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+||
T Consensus       370 ~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG  446 (562)
T PRK12492        370 TSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGN--ELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG  446 (562)
T ss_pred             cCceeeecCCcccccCCccceecCCCEEEEEC-CCCC--CCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecC
Confidence            98877655544333447899999999999998 6554  45567899999999999999999999998888 68999999


Q ss_pred             ceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCC
Q 006197          496 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNG  572 (657)
Q Consensus       496 Dl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~  572 (657)
                      |+|+++++|.+++.||.+|+|++ +|++|+|.+||+.|.+||.|.+++|++.++.   +.+++++++....         
T Consensus       447 D~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---------  516 (562)
T PRK12492        447 DIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPG---------  516 (562)
T ss_pred             cEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC---------
Confidence            99999999999999999999997 7999999999999999999999999987643   4677777765421         


Q ss_pred             CCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006197          573 HAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  640 (657)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~  640 (657)
                      .        .        .+.+++.++ +.|+.|++|..+.++++.      |+|++||++|++|++.
T Consensus       517 ~--------~--------~~~i~~~~~-~~l~~~~~P~~i~~~~~~------P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        517 L--------S--------VEELKAYCK-ENFTGYKVPKHIVLRDSL------PMTPVGKILRRELRDI  561 (562)
T ss_pred             C--------C--------HHHHHHHHH-HhcccccCCcEEEEeccC------CCCCCCceeHHHHHhh
Confidence            0        1        123444443 579999999999987664      9999999999999864

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-59  Score=519.40  Aligned_cols=509  Identities=20%  Similarity=0.223  Sum_probs=396.7

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...++.++|..+++.+|+++|+...    +     +++||.||.+++.++|++|.+.|+++||+|+++++|+++++++++
T Consensus         8 ~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~l   78 (540)
T PRK06164          8 RADTLASLLDAHARARPDAVALIDE----D-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFL   78 (540)
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEecC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHH
Confidence            3448999999999999999999853    2     579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh-----hhhccccccccCceEEEEecCCcHHHHHHHhhCC
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (657)
                      ||+++|++++|+++..+.+++.++++.++++++|++.+...     .+........+..+.++.++......      ..
T Consensus        79 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  152 (540)
T PRK06164         79 ACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT------PA  152 (540)
T ss_pred             HHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC------CC
Confidence            99999999999999999999999999999999999876421     11111111122344455444211000      00


Q ss_pred             cceeeHHHHHhcCccCCc---cCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEE
Q 006197          195 IKPYSWDEFLHLGKVNEM---EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (657)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (657)
                      .....+.++.........   .......+++++++|||||||.||+|++||+++...+..+...+     ++.+++++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~  227 (540)
T PRK06164        153 PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLLA  227 (540)
T ss_pred             CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence            000011111111000000   01223568899999999999999999999999999888777776     7889999999


Q ss_pred             ecChhHHHHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006197          272 FLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKL  350 (657)
Q Consensus       272 ~~pl~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (657)
                      .+|++|.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+... .                 
T Consensus       228 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~-~-----------------  289 (540)
T PRK06164        228 ALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG-E-----------------  289 (540)
T ss_pred             cCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc-c-----------------
Confidence            9999999999888888999999988775 88999999999999999999999998875410 0                 


Q ss_pred             HHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcC-CCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC-
Q 006197          351 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG-APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-  428 (657)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G-~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-  428 (657)
                                               ...+++++.+.++| .+....+.+++.+. ++++++.||+||++..++...... 
T Consensus       290 -------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~  343 (540)
T PRK06164        290 -------------------------RADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATDP  343 (540)
T ss_pred             -------------------------cCCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCCC
Confidence                                     00114788776665 55566677776655 889999999999988666544322 


Q ss_pred             -ccccCccCcCc-cCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCc
Q 006197          429 -MCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGV  505 (657)
Q Consensus       429 -~~~~~~~G~~~-~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~  505 (657)
                       .....+.|.++ ++++++++| ++++ .+++.|+.||||++|++++.||+++++.+.+.| .+|||+|||+|++|++|.
T Consensus       344 ~~~~~~~~g~~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~  421 (540)
T PRK06164        344 VSVRIEGGGRPASPEARVRARD-PQDG-ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQ  421 (540)
T ss_pred             CcceeccCccccCCCeEEEEec-CCCC-cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCce
Confidence             12224567765 799999998 4433 456778899999999999999999999999988 689999999999999999


Q ss_pred             EEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCC--CCeEEEEEecChhhHHHHHHHCCCCccHHHHhcc
Q 006197          506 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  583 (657)
Q Consensus       506 l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (657)
                      +++.||.+|+|++ +|.+|+|.+||+.|.+||+|.+++|++...  ...+++++++.++..          .      . 
T Consensus       422 l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~----------~------~-  483 (540)
T PRK06164        422 FVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGAS----------P------D-  483 (540)
T ss_pred             EEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCC----------C------C-
Confidence            9999999999997 799999999999999999999999998653  347888888765420          0      0 


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCcccccc---ccchHHHHHHHHHHHH
Q 006197          584 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATL---KKKRNKLLIYYQVEID  646 (657)
Q Consensus       584 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~G---Kv~r~~l~~~~~~~i~  646 (657)
                             .+++.++++ ..||.|++|+.+.+++..      |+|++|   |++|++|++++++...
T Consensus       484 -------~~~l~~~~~-~~l~~~~~P~~i~~~~~~------P~t~~g~~~Ki~r~~L~~~~~~~~~  535 (540)
T PRK06164        484 -------EAGLMAACR-EALAGFKVPARVQVVEAF------PVTESANGAKIQKHRLREMAQARLA  535 (540)
T ss_pred             -------HHHHHHHHH-hhcccCcCCcEEEEecCC------CCCCCCccccccHHHHHHHHHHhhh
Confidence                   123444444 679999999999987664      999999   9999999998776554

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=3.3e-60  Score=522.98  Aligned_cols=484  Identities=18%  Similarity=0.190  Sum_probs=361.6

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      |-+.+.|+..++++|+++|+++.   +  ++.|+++||+||.++++++|.+|.+.  ++||+|+++++|++++++++|||
T Consensus         2 ~~~~~~l~~~~~~~~~~~a~~~~---~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~   74 (525)
T PRK05851          2 NELAAALSDAMTASGRDLVVLDR---E--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGA   74 (525)
T ss_pred             chHHHHHHHHhcCCCCceEEeCC---C--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHH
Confidence            44889999999999999999864   3  33578999999999999999999988  89999999999999999999999


Q ss_pred             HhcCCEEEeccCC--------CChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhC
Q 006197          122 NALSLICVPLYDT--------LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (657)
Q Consensus       122 ~~~G~~~v~l~~~--------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (657)
                      +++|++++ +++.        ...+++..+++.++++++|++......+.....    .    +.+.+            
T Consensus        75 ~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~------------  133 (525)
T PRK05851         75 WLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD------------  133 (525)
T ss_pred             HHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc------------
Confidence            99999865 3332        123455677899999999998776544322110    0    00000            


Q ss_pred             CcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCC-CCcEEEEe
Q 006197          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLSF  272 (657)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~-~~d~~l~~  272 (657)
                            +......  ..........++++++|+|||||||.||+|++||+++.+.+..+...+     ++. ++|++++.
T Consensus       134 ------~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~  200 (525)
T PRK05851        134 ------LATAAHT--NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSW  200 (525)
T ss_pred             ------ccccccc--cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEc
Confidence                  0000000  000111224678999999999999999999999999999888776666     677 89999999


Q ss_pred             cChhHHHHHHHHHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 006197          273 LPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (657)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (657)
                      +|++|.+++...+.++..|+++++.+.     ++..+++.+.++++|++..+|.++..+.+....               
T Consensus       201 ~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~---------------  265 (525)
T PRK05851        201 LPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR---------------  265 (525)
T ss_pred             CCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc---------------
Confidence            999999999877888999999998762     577899999999999886555444443221100               


Q ss_pred             HHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHh---cCC---ceeeeccCCCCCCcc
Q 006197          348 LKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTETCGPT  421 (657)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~~~---~v~~~yG~tE~~~~~  421 (657)
                                        ....++        ++||.+++||+++++++.++|.+.   +|.   .+++.||+||++..+
T Consensus       266 ------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~  319 (525)
T PRK05851        266 ------------------VSDVDL--------GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAV  319 (525)
T ss_pred             ------------------ccCCCH--------HHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEE
Confidence                              000011        389999999999999999988764   354   499999999998765


Q ss_pred             ccccCCC--------------ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc
Q 006197          422 TVCFPDE--------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  487 (657)
Q Consensus       422 ~~~~~~~--------------~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~  487 (657)
                      +......              ....+++|+|++|++++|+| +++. .+++.|+.|||+++|++++.||++++..+    
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~GY~~~~~~~----  393 (525)
T PRK05851        320 TVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGA-AGVAGREIGEIEIRGASMMSGYLGQAPID----  393 (525)
T ss_pred             EecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCC-ccCCCCCeEEEEEecCchhhccccCCccC----
Confidence            5432210              12236899999999999998 5543 34566789999999999999999988643    


Q ss_pred             cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhH
Q 006197          488 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDT  564 (657)
Q Consensus       488 ~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~  564 (657)
                      .+|||+|||+|+++ +|.++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+.++|+..... 
T Consensus       394 ~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~-  470 (525)
T PRK05851        394 PDDWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRG-  470 (525)
T ss_pred             CCCceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecC-
Confidence            37999999999996 7999999999999997 8999999999999999999999999986543   2455555433110 


Q ss_pred             HHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          565 KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                              .        +..++.+.+.+.+..     .+  +++|+.+++++.    +.+|+|++||++|++|++.++.
T Consensus       471 --------~--------~~~~~~~~~~~~l~~-----~l--~~~P~~~~~v~~----~~lP~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        471 --------P--------DEAGARSEVVQRVAS-----EC--GVVPSDVVFVAP----GSLPRTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             --------c--------chHHHHHHHHHHHHH-----Hh--CCCccEEEEECC----CCcCcCcchHHHHHHHHHHHHh
Confidence                    0        112222333322221     12  278999999862    1349999999999999987754

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=2.3e-59  Score=521.11  Aligned_cols=518  Identities=23%  Similarity=0.289  Sum_probs=391.1

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      .++...|+..+..+|+++|+.+.    +     +++||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~   90 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG----S-----VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV   90 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            46889999999999999999864    2     57999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccc------cccCceEEEEecCCcHHHHHHHhhCCc
Q 006197          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR------SAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (657)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (657)
                      +++|++++|+++..+.+++.++++.++++++|+++...+...+....      .......++.+................
T Consensus        91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (567)
T PLN02479         91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK  170 (567)
T ss_pred             HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence            99999999999999999999999999999999998765443221110      001112233332211000000000111


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh
Q 006197          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (657)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  275 (657)
                      +...+.+++...............+++++++|||||||.||+|++||+++..........+     ++..++++++.+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~  245 (567)
T PLN02479        171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM  245 (567)
T ss_pred             CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence            2334666554321111111122345678899999999999999999999876655444334     67889999999999


Q ss_pred             hHHHHHHHHHH-HHhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhh
Q 006197          276 AHILDRVIEEY-FFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMN  354 (657)
Q Consensus       276 ~~~~g~~~~~~-~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (657)
                      +|.+++...+. .+..|.++++...++..+++.++++++|++.++|.++..|.++......                   
T Consensus       246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------  306 (567)
T PLN02479        246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETI-------------------  306 (567)
T ss_pred             hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccc-------------------
Confidence            99998776544 4666766666556999999999999999999999999988753211000                   


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCC-------
Q 006197          355 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-------  427 (657)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~-------  427 (657)
                                            ...++++.++++|+++++.+.+.+.+. +.++++.||+||+++.++.+...       
T Consensus       307 ----------------------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  363 (567)
T PLN02479        307 ----------------------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLP  363 (567)
T ss_pred             ----------------------ccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccC
Confidence                                  011488999999999999999999875 88999999999997654432110       


Q ss_pred             ---CccccCccCcCccCee-EEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCC
Q 006197          428 ---EMCMVGTAGPVSVYSE-LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN  503 (657)
Q Consensus       428 ---~~~~~~~~G~~~~~~~-~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~  503 (657)
                         ......+.|.+.++++ +++++.+.+..++.+.++.|||+++|++++.|||++++.+.+.|.+|||+|||+|++|++
T Consensus       364 ~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~~  443 (567)
T PLN02479        364 PEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPD  443 (567)
T ss_pred             cccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEEcCC
Confidence               0111245677888875 788873334433333346899999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHH
Q 006197          504 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  580 (657)
Q Consensus       504 G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  580 (657)
                      |.++++||.+|+|++ +|.+|++.+||..|.+||.|.+|+|++..+.   +.+++++++..+...               
T Consensus       444 g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---------------  507 (567)
T PLN02479        444 GYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDK---------------  507 (567)
T ss_pred             ccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccc---------------
Confidence            999999999999996 8999999999999999999999999997643   478888888764310               


Q ss_pred             hccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          581 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       581 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                       ++   .+...++|.+++. .+||.|++|+.+.+. +      +|+|++||++|++|++.+..
T Consensus       508 -~~---~~~~~~~l~~~~~-~~l~~~~~P~~~~~~-~------iP~t~~gKv~r~~L~~~~~~  558 (567)
T PLN02479        508 -SD---EAALAEDIMKFCR-ERLPAYWVPKSVVFG-P------LPKTATGKIQKHVLRAKAKE  558 (567)
T ss_pred             -cc---hhhhHHHHHHHHH-hhcccccCCceEEec-c------CCCCCccCeeHHHHHHHHHh
Confidence             00   1122345556664 689999999988762 2      48999999999999877554

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-59  Score=513.37  Aligned_cols=485  Identities=19%  Similarity=0.222  Sum_probs=382.9

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      ...++.++|...+.  ++++++++.    +     +.+||.||.++++++|++|++. |++++++|+++++|++++++++
T Consensus         3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~   71 (529)
T PRK07867          3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL   71 (529)
T ss_pred             ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence            45578999988775  789999864    3     5899999999999999999997 8999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      +||+++|++++|+++..+.+++..+++.++++++|+++.....+....    .... ++..+..                
T Consensus        72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~~-~~~~~~~----------------  130 (529)
T PRK07867         72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGVR-VINVDSP----------------  130 (529)
T ss_pred             HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCce-EEEeccc----------------
Confidence            999999999999999999999999999999999999987766442211    1111 2222110                


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                      .+.+++..............++++++++|||||||.||+|++||+++......+...+     ++..+|+++..+|++|.
T Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~  205 (529)
T PRK07867        131 AWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHS  205 (529)
T ss_pred             cHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHH
Confidence            2333332221111222335678999999999999999999999999988887766666     78889999999999999


Q ss_pred             HHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG  356 (657)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (657)
                      +++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+.+..+....+..                       
T Consensus       206 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~-----------------------  262 (529)
T PRK07867        206 NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERP-----------------------  262 (529)
T ss_pred             HHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcc-----------------------
Confidence            98875 4457889999888765 8999999999999999999999988765321100                       


Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccC
Q 006197          357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  436 (657)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G  436 (657)
                                         ....+++|. ++||+.+++.. ..+.+.+|.++++.||+||+++.+.....   ...+++|
T Consensus       263 -------------------~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~~~g  318 (529)
T PRK07867        263 -------------------DDADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPGALG  318 (529)
T ss_pred             -------------------cccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCCCcC
Confidence                               000136784 56888887765 56666779999999999999876553321   2347899


Q ss_pred             cCccCeeEEEeecCCCCCCCCCCCC------------CceEEE-ccCCcccccCCCchhhhccccCCccccCceEEEcCC
Q 006197          437 PVSVYSELRLEEVPEMGYSPLDDPP------------CGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN  503 (657)
Q Consensus       437 ~~~~~~~~~iv~~~~~~~~~~~~~~------------~GEl~v-~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~  503 (657)
                      .|+++  +++++.+.+.  +++.++            .|||++ +|++++.||+++++.+.+.|.+|||+|||+|+++++
T Consensus       319 ~~~~~--~~i~~~~~~~--~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~  394 (529)
T PRK07867        319 PLPPG--VAIVDPDTGT--ECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDAD  394 (529)
T ss_pred             CCCCC--EEEEECCCCC--CCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEeCC
Confidence            99998  6777723333  334444            899999 999999999999999998899999999999999999


Q ss_pred             CcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHH
Q 006197          504 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  580 (657)
Q Consensus       504 G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  580 (657)
                      |.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+++++++.++..        .       
T Consensus       395 g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~--------~-------  458 (529)
T PRK07867        395 GYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAK--------F-------  458 (529)
T ss_pred             CcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCC--------C-------
Confidence            999999999999997 8999999999999999999999999997754   47888888776420        0       


Q ss_pred             hccHHHHHHHHHHHHHHHH-hCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          581 CSLVQLQNYILSELKNAAE-RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       581 ~~~~~~~~~~~~~l~~~~~-~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                       +..        +++++++ +..|+.|++|..+.++++.      |+|++||++|++|+++...
T Consensus       459 -~~~--------~l~~~~~~~~~l~~~~~P~~i~~~~~i------P~t~~GKv~r~~L~~~~~~  507 (529)
T PRK07867        459 -DPD--------AFAEFLAAQPDLGPKQWPSYVRVCAEL------PRTATFKVLKRQLSAEGVD  507 (529)
T ss_pred             -CHH--------HHHHHHHhhccCCcccCCeEEEEeecc------CCCCCcceeHHHHHHhcCC
Confidence             111        2222222 2469999999999997664      9999999999999987643

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.3e-60  Score=617.22  Aligned_cols=483  Identities=19%  Similarity=0.233  Sum_probs=402.5

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      +...++.++|..+++++|+++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|+++++|++++++++
T Consensus      3092 ~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~ 3162 (3956)
T PRK12467       3092 PSERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVAL 3162 (3956)
T ss_pred             CccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHH
Confidence            34579999999999999999999985   3      57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      |||+++|++++|++|.++.+++.++++.++++++|++......+...      ....++.++...               
T Consensus      3163 lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------~~~~~~~~~~~~--------------- 3221 (3956)
T PRK12467       3163 LAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------AGDTALTLDRLD--------------- 3221 (3956)
T ss_pred             HHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------cCCceeeecchh---------------
Confidence            99999999999999999999999999999999999998765543111      011122222110               


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                            ........+.....++++++++|||||||.||||+++|+++.+.+......+     +++++|++++..|++|.
T Consensus      3222 ------~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 3290 (3956)
T PRK12467       3222 ------LNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFD 3290 (3956)
T ss_pred             ------hcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHh
Confidence                  0000111222345789999999999999999999999999999998877777     88999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q 006197          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM  355 (657)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (657)
                      .+....+.+|..|+++++.+.   ++..+++.|.++++|++.++|+++..+.+...                        
T Consensus      3291 ~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~------------------------ 3346 (3956)
T PRK12467       3291 GAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG------------------------ 3346 (3956)
T ss_pred             HHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc------------------------
Confidence            888888999999999998874   78999999999999999999999988764210                        


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCCc----c
Q 006197          356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM----C  430 (657)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~----~  430 (657)
                                          ....++||.+++||+++++++.+.|.+.+ +..++|.||+||+++.++.......    .
T Consensus      3347 --------------------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 3406 (3956)
T PRK12467       3347 --------------------GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEA 3406 (3956)
T ss_pred             --------------------ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCC
Confidence                                00114899999999999999999998776 6789999999999987765443221    2


Q ss_pred             ccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCC-------ccccCceEEEcC
Q 006197          431 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG-------WFHTGDIGQILP  502 (657)
Q Consensus       431 ~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g-------~~~TGDl~~~~~  502 (657)
                      ...++|+|++|++++|+| +++.  +++.|+.|||+|+|+.+++||+++++.|.+.| .++       ||+|||+|++++
T Consensus      3407 ~~~~iG~p~~~~~~~v~d-~~~~--~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~ 3483 (3956)
T PRK12467       3407 PYAPIGRPVAGRSIYVLD-GQLN--PVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRA 3483 (3956)
T ss_pred             CCCCCccccCCCEEEEEC-CCCC--CCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecC
Confidence            236899999999999998 5554  55677899999999999999999999999998 443       699999999999


Q ss_pred             CCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCC--CCeEEEEEecChhhHHHHHHHCCCCccHHHH
Q 006197          503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  580 (657)
Q Consensus       503 ~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  580 (657)
                      ||.++++||.||+||+ +|++|++.+||++|.+||+|.+|+|++...  .+.++++|++..+..                
T Consensus      3484 dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~---------------- 3546 (3956)
T PRK12467       3484 DGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQG---------------- 3546 (3956)
T ss_pred             CCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCCc----------------
Confidence            9999999999999998 799999999999999999999999997542  458999999876320                


Q ss_pred             hccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006197          581 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  641 (657)
Q Consensus       581 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~  641 (657)
                              ...+.+++.++ ..||.|++|..|++++..      |+|++||++|++|.+.+
T Consensus      3547 --------~~~~~l~~~l~-~~Lp~y~vP~~~~~l~~l------P~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467       3547 --------DWRETLRDHLA-ASLPDYMVPAQLLVLAAM------PLGPNGKVDRKALPDPD 3592 (3956)
T ss_pred             --------ccHHHHHHHHh-ccCChhhCCCeeeeeccC------CCCCCCccchhhcCCCC
Confidence                    01234455554 789999999999987654      99999999999997654

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-59  Score=526.88  Aligned_cols=502  Identities=20%  Similarity=0.229  Sum_probs=385.1

Q ss_pred             CCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006197           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (657)
Q Consensus        36 ~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~  115 (657)
                      ..+....++.++|.++++++|+++|+++.   +      +++||+||.++++++|.+|.+.|+++||+|+++++|+++++
T Consensus        31 ~~~~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v  101 (600)
T PRK08279         31 ITPDSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYL  101 (600)
T ss_pred             cCCCCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHH
Confidence            34466779999999999999999999875   3      57999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCc
Q 006197          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (657)
Q Consensus       116 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (657)
                      +++|||+++|++++++++..+.+++.++++.++++++|++.+..+.+.+.... ......++..++....          
T Consensus       102 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------  170 (600)
T PRK08279        102 AAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARAD-LARPPRLWVAGGDTLD----------  170 (600)
T ss_pred             HHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhh-hcccceEEEecCcccc----------
Confidence            99999999999999999999999999999999999999998876655332221 1122233333221100          


Q ss_pred             ceeeHHHHHhcCccC----CccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEE
Q 006197          196 KPYSWDEFLHLGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (657)
Q Consensus       196 ~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (657)
                      ....+.++.......    .........+++++++|||||||.||+|++||+++.+++..+...+     .+.++|++++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~  245 (600)
T PRK08279        171 DPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYC  245 (600)
T ss_pred             ccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEE
Confidence            011233333221111    1112334678999999999999999999999999999988877666     7899999999


Q ss_pred             ecChhHHHHHHHHHH-HHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 006197          272 FLPLAHILDRVIEEY-FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALK  349 (657)
Q Consensus       272 ~~pl~~~~g~~~~~~-~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (657)
                      .+|++|.+++...+. ++..|+++++.+. ++..+++.++++++|++.++|+++..+.+......               
T Consensus       246 ~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~---------------  310 (600)
T PRK08279        246 CLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT---------------  310 (600)
T ss_pred             ecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc---------------
Confidence            999999999886554 5778888888765 88999999999999999999999887764211000               


Q ss_pred             HHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCC-ceeeeccCCCCCCccccccCCC
Q 006197          350 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDE  428 (657)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~~~  428 (657)
                                                 ....++|.+  +|+.+++.+.+.+.+.++. .+++.||+||++..+...    
T Consensus       311 ---------------------------~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~----  357 (600)
T PRK08279        311 ---------------------------DRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV----  357 (600)
T ss_pred             ---------------------------ccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc----
Confidence                                       001366654  4778999999999988876 599999999988643322    


Q ss_pred             ccccCccCcCcc----Cee---------EEEeecCCCCCCCCCCCCCceEE--EccCCcccccCCCchhhhccc------
Q 006197          429 MCMVGTAGPVSV----YSE---------LRLEEVPEMGYSPLDDPPCGEVC--VRGKTLFSGYYKNPDLTRESI------  487 (657)
Q Consensus       429 ~~~~~~~G~~~~----~~~---------~~iv~~~~~~~~~~~~~~~GEl~--v~g~~~~~gy~~~~~~~~~~~------  487 (657)
                      ....+++|.+.+    +..         ..+.+ .++...+++.++.|||+  +.|+.++.|| +++..+.+.|      
T Consensus       358 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~  435 (600)
T PRK08279        358 FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFK  435 (600)
T ss_pred             CCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccC
Confidence            122356776554    222         22333 33333456677899998  7799999999 8888877665      


Q ss_pred             -cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC----CeEEEEEecChh
Q 006197          488 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEE  562 (657)
Q Consensus       488 -~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~----~~~~a~v~~~~~  562 (657)
                       .++||+|||+|++|++|++++.||.+|+|++ +|++|+|.+||+.|.+||+|.+|+|++.++.    ...+++++..++
T Consensus       436 ~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~  514 (600)
T PRK08279        436 KGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADG  514 (600)
T ss_pred             CCCceEeecceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCC
Confidence             2589999999999999999999999999997 7999999999999999999999999986532    334555555432


Q ss_pred             hHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          563 DTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                      .        ..        .        .++++++++ .+||.|++|..|+++++.      |+|.+||++|++|++++.
T Consensus       515 ~--------~~--------~--------~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~  563 (600)
T PRK08279        515 A--------EF--------D--------LAALAAHLY-ERLPAYAVPLFVRLVPEL------ETTGTFKYRKVDLRKEGF  563 (600)
T ss_pred             c--------cC--------C--------HHHHHHHHH-hhCccccCCeEEEeecCC------CCCcchhhhHHHHhhcCC
Confidence            1        00        1        123444444 679999999999997664      999999999999998875


Q ss_pred             HH
Q 006197          643 VE  644 (657)
Q Consensus       643 ~~  644 (657)
                      +.
T Consensus       564 ~~  565 (600)
T PRK08279        564 DP  565 (600)
T ss_pred             Cc
Confidence            54

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.9e-59  Score=515.94  Aligned_cols=483  Identities=19%  Similarity=0.186  Sum_probs=377.3

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCchhHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~-~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      .++.++|.+++  .|+++|+++.    +     .++||.||.++++++|.+|.+.|+ ++||+|+++++|+++++++++|
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~----~-----~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA   71 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG----D-----RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA   71 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            47888887764  7999999864    3     589999999999999999999999 8999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|++|.++.+++..+++.++++++|++.+....+.+..   .+..+ ++..+..                .+
T Consensus        72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~-~i~~~~~----------------~~  131 (540)
T PRK13388         72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVR-VLDVDTP----------------AY  131 (540)
T ss_pred             HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCce-EEEccch----------------hh
Confidence            9999999999999999999999999999999999887665442211   11222 2222211                12


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (657)
                      .+++... ....+.....++++++++|||||||.||+|.++|+++......+...+     ++..+|+++..+|++|.++
T Consensus       132 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  205 (540)
T PRK13388        132 AELVAAA-GALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNA  205 (540)
T ss_pred             hhhhccc-cCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcc
Confidence            2232211 111112235679999999999999999999999999988777766666     7889999999999999988


Q ss_pred             HHHHH-HHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCC
Q 006197          281 RVIEE-YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK  358 (657)
Q Consensus       281 ~~~~~-~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (657)
                      +...+ .++..|+++++.+. ++..+++.++++++|++..+|..+..+......                          
T Consensus       206 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~--------------------------  259 (540)
T PRK13388        206 VMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPER--------------------------  259 (540)
T ss_pred             hHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC--------------------------
Confidence            87644 46889999988765 889999999999999999999988776532100                          


Q ss_pred             CCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcC
Q 006197          359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV  438 (657)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~  438 (657)
                          .   .         ....+++.+ + |+.++++....+.+.++.++++.||+||++..++...   ....+++|+|
T Consensus       260 ----~---~---------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~vG~p  318 (540)
T PRK13388        260 ----P---D---------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP---GTPPGSIGRG  318 (540)
T ss_pred             ----c---c---------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC---CCCCCCCCCC
Confidence                0   0         001256643 3 6677888888888888999999999999987665432   1234789999


Q ss_pred             ccCeeEE-----------EeecCCCCCCCCCCCCCceEEEc-cCCcccccCCCchhhhccccCCccccCceEEEcCCCcE
Q 006197          439 SVYSELR-----------LEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  506 (657)
Q Consensus       439 ~~~~~~~-----------iv~~~~~~~~~~~~~~~GEl~v~-g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l  506 (657)
                      ++++++.           ++| +++. ...+.+..|||+++ |++++.||++++..+.+.|.+|||+|||+|++|++|.+
T Consensus       319 ~~g~~i~~~~~~~~~~~~~~d-~~g~-~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~dg~l  396 (540)
T PRK13388        319 APGVAIYNPETLTECAVARFD-AHGA-LLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWI  396 (540)
T ss_pred             CCCcEEEcCCCCccccceecc-Cccc-cccCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCCCcE
Confidence            9986543           111 1111 11133568999998 99999999999999999998999999999999999999


Q ss_pred             EEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhcc
Q 006197          507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  583 (657)
Q Consensus       507 ~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (657)
                      ++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.++.   +.+++++++.++..        .        ..
T Consensus       397 ~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~--------~--------~~  459 (540)
T PRK13388        397 YFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGAT--------F--------DP  459 (540)
T ss_pred             EEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCc--------C--------CH
Confidence            999999999997 8999999999999999999999999997653   36677777765420        0        11


Q ss_pred             HHHHHHHHHHHHHHHH-hCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006197          584 VQLQNYILSELKNAAE-RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  641 (657)
Q Consensus       584 ~~~~~~~~~~l~~~~~-~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~  641 (657)
                              +++++++. +..|+.|++|..++++++.      |+|++||++|++|+++.
T Consensus       460 --------~~l~~~l~~~~~l~~~~~P~~~~~v~~i------P~t~~GKv~R~~L~~~~  504 (540)
T PRK13388        460 --------DAFAAFLAAQPDLGTKAWPRYVRIAADL------PSTATNKVLKRELIAQG  504 (540)
T ss_pred             --------HHHHHHHHhhccCCcccCCcEEEEeccC------CCCCcceeeHHhHHHhc
Confidence                    12222222 2369999999999987664      99999999999998865

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.9e-59  Score=510.94  Aligned_cols=473  Identities=22%  Similarity=0.265  Sum_probs=378.3

Q ss_pred             HHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEE
Q 006197           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (657)
Q Consensus        49 ~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  128 (657)
                      +.+++.+||++|+.+.   ...    +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   74 (488)
T PRK09088          2 AFHARLQPQRLAAVDL---ALG----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY   74 (488)
T ss_pred             chhhhhCCCceEEEec---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            4567889999999763   121    589999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCc
Q 006197          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (657)
Q Consensus       129 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  208 (657)
                      +|+++..+.+++..+++.++++++|+++.......           ..                     ..++++.....
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~~---------------------~~~~~~~~~~~  122 (488)
T PRK09088         75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------DV---------------------EDLAAFIASAD  122 (488)
T ss_pred             EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------cc---------------------cchhhhhhhcc
Confidence            99999999999999999999999999865432100           00                     01111111100


Q ss_pred             -cCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHH-HH
Q 006197          209 -VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE-EY  286 (657)
Q Consensus       209 -~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~-~~  286 (657)
                       ...........+++++++|||||||.||+|.+||+++...+..+....     .+..+|++++.+|++|.+++... ..
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~  197 (488)
T PRK09088        123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP  197 (488)
T ss_pred             ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence             011112234568899999999999999999999999988777765554     67889999999999999998764 45


Q ss_pred             HHhcCcEEEEecC-ChHHHHHHHh--hhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcc
Q 006197          287 FFRRGASVGYYHG-DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREAS  363 (657)
Q Consensus       287 ~l~~G~~~v~~~~-~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (657)
                      ++..|+++++.+. ++..++..+.  ++++|+++++|+++..+.+...                                
T Consensus       198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~--------------------------------  245 (488)
T PRK09088        198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG--------------------------------  245 (488)
T ss_pred             HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--------------------------------
Confidence            6888999888765 7788888775  4899999999999987753210                                


Q ss_pred             hhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCC--CccccCccCcCccC
Q 006197          364 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPVSVY  441 (657)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~--~~~~~~~~G~~~~~  441 (657)
                        .+..        .++++|.+++||++++....+.+.+. +.++++.||+||+++........  .....+++|.|+++
T Consensus       246 --~~~~--------~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~  314 (488)
T PRK09088        246 --FDAA--------ALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPT  314 (488)
T ss_pred             --cCcc--------ccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccCCCC
Confidence              0000        11389999999999999988887764 89999999999998754332211  12234789999999


Q ss_pred             eeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecCcceeecCC
Q 006197          442 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ  520 (657)
Q Consensus       442 ~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~  520 (657)
                      ++++|++ +++.  +++.++.|||+++|++++.||+++++.+.+.| .+|||+|||+|+++++|.+++.||.+|+|++ +
T Consensus       315 ~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~  390 (488)
T PRK09088        315 VQTRVVD-DQGN--DCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFIS-G  390 (488)
T ss_pred             cEEEEEC-CCCC--CCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEe-C
Confidence            9999998 5554  45567899999999999999999999888887 5899999999999999999999999999996 8


Q ss_pred             ceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHH
Q 006197          521 GEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  597 (657)
Q Consensus       521 G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  597 (657)
                      |.+|+|.+||+.|.++|+|.+++|++.+++   +..+++|++.++..          .      .        .+.+.++
T Consensus       391 G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------~------~--------~~~l~~~  446 (488)
T PRK09088        391 GENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAP----------L------D--------LERIRSH  446 (488)
T ss_pred             CEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCC----------C------C--------HHHHHHH
Confidence            999999999999999999999999997653   46778888765320          0      0        1234444


Q ss_pred             HHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       598 ~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                      ++ ..+++|++|..|.+++..      |+|++||++|++|++++.+
T Consensus       447 ~~-~~l~~~~~p~~i~~~~~i------P~t~~gKi~r~~l~~~~~~  485 (488)
T PRK09088        447 LS-TRLAKYKVPKHLRLVDAL------PRTASGKLQKARLRDALAA  485 (488)
T ss_pred             HH-hhCcCCCCCCEEEEcccC------CCCCCCceeHHHHHHHHHh
Confidence            43 578999999999987654      9999999999999998865

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1e-58  Score=513.75  Aligned_cols=515  Identities=24%  Similarity=0.272  Sum_probs=395.3

Q ss_pred             CCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006197           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (657)
Q Consensus        37 ~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~  116 (657)
                      .+....++.++|+++++.+|+++|+.+.   +      +++||.||.++++++|.+|.+.|+++||+|+++++|++++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~   86 (541)
T TIGR03205        16 ATIARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPI   86 (541)
T ss_pred             cCCCCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHH
Confidence            3445668999999999999999999864   3      589999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchh--hhhhhccccccccCceEEEEecCCcHHHHH---HHh
Q 006197          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK--VKELLSPDCRSAQRLRVMVCFTSLTAEQKE---MAV  191 (657)
Q Consensus       117 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~  191 (657)
                      +++||+++|++++|++|..+.+++.++++.++++++++++..  .....+....  .....++...........   ...
T Consensus        87 ~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  164 (541)
T TIGR03205        87 NFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPI  164 (541)
T ss_pred             HHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEeccccccccccccccc
Confidence            999999999999999999999999999999999999987632  1111111110  112233333221100000   000


Q ss_pred             hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhccc-ccCCCCCCcEEE
Q 006197          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ-FEDKMTVDDVYL  270 (657)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~-~~~~~~~~d~~l  270 (657)
                      .......++.+++... ..........++++++++|||||||.||+|+++|+++....... ..+.. ........++++
T Consensus       165 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l  242 (541)
T TIGR03205       165 PADPRIVTYADFVKGA-AAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVI  242 (541)
T ss_pred             CCCcccccHHHHHhcC-CCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEE
Confidence            0111234455555432 11112233567899999999999999999999999987654422 11110 011234458999


Q ss_pred             EecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006197          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (657)
Q Consensus       271 ~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (657)
                      +.+|++|.+++.. .+.++..|+++++... ++..+++.|+++++|++.++|+++..+.+...                 
T Consensus       243 ~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------  305 (541)
T TIGR03205       243 CVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS-----------------  305 (541)
T ss_pred             EeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc-----------------
Confidence            9999999988775 5567889999887765 89999999999999999999999988753110                 


Q ss_pred             HHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC
Q 006197          349 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  428 (657)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~  428 (657)
                                       ...        ..++++|.+++||+++++++.+++.+.++.++++.||+||++..++......
T Consensus       306 -----------------~~~--------~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~  360 (541)
T TIGR03205       306 -----------------LEK--------RDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEG  360 (541)
T ss_pred             -----------------ccc--------cCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCC
Confidence                             000        0113899999999999999999998888999999999999998776654433


Q ss_pred             ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEE
Q 006197          429 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  508 (657)
Q Consensus       429 ~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i  508 (657)
                      ....+++|.|++++.+++++.++. ..+++.++.|||+++|++++.||+++++.+.+.|.++||+|||+++++++|++++
T Consensus       361 ~~~~~~~G~~~~~~~~~v~~~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i  439 (541)
T TIGR03205       361 PDKPGSIGLMLPGIELDVVSLDDP-TKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFL  439 (541)
T ss_pred             CCCCCCcceeccCceeEEEecCCC-CccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEEE
Confidence            334578999999999998763332 2455667899999999999999999999999989899999999999999999999


Q ss_pred             EecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHH
Q 006197          509 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  585 (657)
Q Consensus       509 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (657)
                      .||.+|+|++ +|++|+|.+||+.+.+|++|.+++|++.++.   +.+++++++.++..         ..      .   
T Consensus       440 ~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---------~~------~---  500 (541)
T TIGR03205       440 VDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAK---------PF------S---  500 (541)
T ss_pred             EccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCC---------cC------C---
Confidence            9999999996 8999999999999999999999999987643   46788888775420         00      0   


Q ss_pred             HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006197          586 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  638 (657)
Q Consensus       586 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~  638 (657)
                           .+.+.++++ +.|+.|++|+.|.++++.      |+|++||++|++|+
T Consensus       501 -----~~~l~~~~~-~~l~~~~~P~~i~~~~~i------P~t~~gK~~r~~l~  541 (541)
T TIGR03205       501 -----LDELRAFLA-GKLGKHELPVAVEFVDEL------PRTPVGKLSRHELR  541 (541)
T ss_pred             -----HHHHHHHHH-hhcccccCCcEEEEeccC------CCCcccceeHhhcC
Confidence                 123344443 679999999999998664      99999999999873

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.4e-59  Score=515.91  Aligned_cols=514  Identities=22%  Similarity=0.279  Sum_probs=396.2

Q ss_pred             CCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006197           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (657)
Q Consensus        38 ~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~  117 (657)
                      +....++.++|..+++++|+++|+++.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++
T Consensus        19 ~~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~   89 (557)
T PRK07059         19 ASQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVA   89 (557)
T ss_pred             CCCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHH
Confidence            344578999999999999999999875   3      5799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHH--HHH------
Q 006197          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEM------  189 (657)
Q Consensus       118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~------  189 (657)
                      ++||+++|++++|++|..+.+++.++++.++++++++++.....+......  .....++.........  ...      
T Consensus        90 ~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (557)
T PRK07059         90 IAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVR  167 (557)
T ss_pred             HHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEecccccccccccccccccc
Confidence            999999999999999999999999999999999999987655433221111  1122222221100000  000      


Q ss_pred             --H----hhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccc-cCC
Q 006197          190 --A----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF-EDK  262 (657)
Q Consensus       190 --~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~-~~~  262 (657)
                        .    .........+.+++..............++++++++|||||||.||+|+++|.++..++......+... ...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~  247 (557)
T PRK07059        168 RVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKK  247 (557)
T ss_pred             cccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhccccccc
Confidence              0    000011233444444332222223445678999999999999999999999999987665433222110 001


Q ss_pred             -CCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006197          263 -MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (657)
Q Consensus       263 -~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~  338 (657)
                       ......+++.+|++|.+++.. .+.++..|++.++.+.  ++..+++.++++++|.+.++|.++..+.+...       
T Consensus       248 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~-------  320 (557)
T PRK07059        248 PRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD-------  320 (557)
T ss_pred             CCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC-------
Confidence             123457888999999988764 5567888888777654  78899999999999999999999988764211       


Q ss_pred             hHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCC
Q 006197          339 PLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC  418 (657)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~  418 (657)
                                                 ....++        +++|.++.||+++++.+.+.|.+.+++++++.||+||++
T Consensus       321 ---------------------------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  365 (557)
T PRK07059        321 ---------------------------FDKLDF--------SKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETS  365 (557)
T ss_pred             ---------------------------cCcCCc--------hhheEEEeccccCCHHHHHHHHHHhCCCeeecccccccc
Confidence                                       000111        388999999999999999999988899999999999999


Q ss_pred             CccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCce
Q 006197          419 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDI  497 (657)
Q Consensus       419 ~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl  497 (657)
                      .+++..........+++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+
T Consensus       366 ~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl  442 (557)
T PRK07059        366 PVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGN--DLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDV  442 (557)
T ss_pred             chhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcE
Confidence            877665544334458999999999999998 6554  45667899999999999999999999998877 6899999999


Q ss_pred             EEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCC
Q 006197          498 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHA  574 (657)
Q Consensus       498 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~  574 (657)
                      ++++++|.+++.||.+|+|++ +|++|+|.+||+.|.++|+|.+++|++..+.   +.++++++.....         . 
T Consensus       443 ~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~---------~-  511 (557)
T PRK07059        443 GVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPA---------L-  511 (557)
T ss_pred             EEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCC---------C-
Confidence            999999999999999999997 7999999999999999999999999986543   4677777755421         0 


Q ss_pred             ccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006197          575 GSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  640 (657)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~  640 (657)
                             .        .+.+.+.+. +.++.+++|..+.+++..      |+|++||++|+.|+++
T Consensus       512 -------~--------~~~l~~~~~-~~l~~~~~P~~i~~v~~~------P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        512 -------T--------EEDVKAFCK-ERLTNYKRPKFVEFRTEL------PKTNVGKILRRELRDG  555 (557)
T ss_pred             -------C--------HHHHHHHHH-HhcccccCCcEEEEeccC------CCCcccceeHHHHHhh
Confidence                   1        123334443 578999999999987654      9999999999999764

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=4.8e-59  Score=512.32  Aligned_cols=484  Identities=18%  Similarity=0.204  Sum_probs=389.5

Q ss_pred             cHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 006197           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (657)
Q Consensus        43 ~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~  122 (657)
                      ++.+.|.+.++.+|+++|+...    +     +++||.||.+++.++|..|.+.|+++|++|+++++|+.+++++++||+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~   71 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ----G-----QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI   71 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            5789999999999999999764    3     589999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHH
Q 006197          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (657)
Q Consensus       123 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (657)
                      ++|++++|+++.++.+++.++++..+++.++++.........        .. ++.++.                  ...
T Consensus        72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~~-~~~~~~------------------~~~  124 (502)
T TIGR01734        72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------TQ-IITLSA------------------LEQ  124 (502)
T ss_pred             HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------Cc-eEEchH------------------hhh
Confidence            999999999999999999999999999999998765432211        11 111111                  011


Q ss_pred             HHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH
Q 006197          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (657)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  282 (657)
                      +.... ..........++++++++|||||||.||+|+++|+++.....+....+     ....++++++.+|++|..++.
T Consensus       125 ~~~~~-~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~  198 (502)
T TIGR01734       125 AETSG-GPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVM  198 (502)
T ss_pred             hhhhc-CCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHH
Confidence            11111 011111234678899999999999999999999999998887766555     788899999999999999888


Q ss_pred             HHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCC
Q 006197          283 IEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK  358 (657)
Q Consensus       283 ~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (657)
                      ..+.++..|+++++.+.    ++..+++.+.+++++.+.++|.++..+......                          
T Consensus       199 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~--------------------------  252 (502)
T TIGR01734       199 DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF--------------------------  252 (502)
T ss_pred             HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc--------------------------
Confidence            88889999999998764    788999999999999999999998766432100                          


Q ss_pred             CCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCC----CccccC
Q 006197          359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----EMCMVG  433 (657)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~----~~~~~~  433 (657)
                                      .....++++.++++|+++++.+.+.+.+.+ +..+++.||+||+++.++.....    ......
T Consensus       253 ----------------~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~  316 (502)
T TIGR01734       253 ----------------NQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRL  316 (502)
T ss_pred             ----------------ccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCcc
Confidence                            001124899999999999999999998877 78999999999998654433221    122235


Q ss_pred             ccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc----CCccccCceEEEcCCCcEEEE
Q 006197          434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNGVVKII  509 (657)
Q Consensus       434 ~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~----~g~~~TGDl~~~~~~G~l~i~  509 (657)
                      ++|.+.++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+.+.|.    .+||+|||+|++|++ ++++.
T Consensus       317 ~vg~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~  392 (502)
T TIGR01734       317 PIGFAKPDMNLFIMD-EEGE--PLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQ  392 (502)
T ss_pred             ccccccCCCEEEEEC-CCCC--CCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEe
Confidence            799999999999998 6554  455678999999999999999999998887762    359999999999976 99999


Q ss_pred             ecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecC--C--CCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHH
Q 006197          510 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--L--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  585 (657)
Q Consensus       510 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~--~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (657)
                      ||.+|+|++ +|++|+|.+||+.+.++|.|.+|+|++..  .  .+.++++|++......                ..  
T Consensus       393 GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~----------------~~--  453 (502)
T TIGR01734       393 GRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFE----------------KE--  453 (502)
T ss_pred             ccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccc----------------cc--
Confidence            999999997 89999999999999999999999999843  1  2478888887764310                11  


Q ss_pred             HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          586 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       586 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                        ..+.++|++.++ +.+|.+++|+.+++++..      |+|++||++|++|++++.
T Consensus       454 --~~~~~~i~~~~~-~~l~~~~~P~~~~~v~~l------P~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       454 --FQLTKAIKKELK-KSLPAYMIPRKFIYRDQL------PLTANGKIDRKALAEEVN  501 (502)
T ss_pred             --hhhHHHHHHHHh-hhChhhcCCcEEEEcccc------CCCCCCcccHHHHHHhhc
Confidence              122344555554 689999999999997654      999999999999998764

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-58  Score=515.78  Aligned_cols=512  Identities=23%  Similarity=0.296  Sum_probs=392.2

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...++.++|...++.+|+++|+++.    +     +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|
T Consensus        22 ~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   92 (563)
T PRK06710         22 DIQPLHKYVEQMASRYPEKKALHFL----G-----KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY   92 (563)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEec----C-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            3468999999999999999999874    3     589999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCc--H--HHH--HHHh--
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--A--EQK--EMAV--  191 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~~~--~~~~--  191 (657)
                      ||+++|++++|++|..+.+++..+++.++++++++++.....+..... . .....++......  .  ...  ....  
T Consensus        93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (563)
T PRK06710         93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQS-A-TKIEHVIVTRIADFLPFPKNLLYPFVQKK  170 (563)
T ss_pred             HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccch-h-hccceeEEeccccccccccccccchhhcc
Confidence            999999999999999999999999999999999998865443322110 0 1111222111000  0  000  0000  


Q ss_pred             --------hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCC
Q 006197          192 --------QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (657)
Q Consensus       192 --------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (657)
                              ........|..+.... ...........+++++++|||||||.||+|.+||+++..++......+    ...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~----~~~  245 (563)
T PRK06710        171 QSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL----YNC  245 (563)
T ss_pred             cccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc----cCC
Confidence                    0000000122211111 011111112457899999999999999999999999976543322211    022


Q ss_pred             -CCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 006197          264 -TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (657)
Q Consensus       264 -~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~  340 (657)
                       ..++++++.+|++|.+++.. ...++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+...         
T Consensus       246 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------  316 (563)
T PRK06710        246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL---------  316 (563)
T ss_pred             CCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc---------
Confidence             34568899999999998865 4557889999988765 89999999999999999999999988764210         


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCc
Q 006197          341 RRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP  420 (657)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~  420 (657)
                                               ....++        +++|.+++||+++++++.+++.+.++.++++.||+||++..
T Consensus       317 -------------------------~~~~~~--------~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  363 (563)
T PRK06710        317 -------------------------LKEYDI--------SSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPV  363 (563)
T ss_pred             -------------------------cccCCh--------hhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccc
Confidence                                     000111        37899999999999999999999889999999999999876


Q ss_pred             cccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEE
Q 006197          421 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  500 (657)
Q Consensus       421 ~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~  500 (657)
                      ............+++|.+++++.+++++ ++++ .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||++++
T Consensus       364 ~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~  441 (563)
T PRK06710        364 THSNFLWEKRVPGSIGVPWPDTEAMIMS-LETG-EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYM  441 (563)
T ss_pred             cccCcccccccCCccCCCCCCCeEEEEE-CCCC-ccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccceEEE
Confidence            5544332333347899999999999998 4433 4566778999999999999999999999998889999999999999


Q ss_pred             cCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccH
Q 006197          501 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF  577 (657)
Q Consensus       501 ~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~  577 (657)
                      +++|.+++.||.+|+|++ +|.+|+|.+||+.|.++|.|.+++|++.++.   +.++++++..++..        .    
T Consensus       442 ~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------~----  508 (563)
T PRK06710        442 DEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTE--------C----  508 (563)
T ss_pred             cCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCC--------C----
Confidence            999999999999999997 7999999999999999999999999997653   47888888765420        0    


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          578 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       578 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                          .        .++++++++ +.++.+++|..+.++++.      |+|++||++|++|++++..
T Consensus       509 ----~--------~~~l~~~~~-~~l~~~~~P~~~~~v~~i------P~t~~GKi~r~~L~~~~~~  555 (563)
T PRK06710        509 ----S--------EEELNQFAR-KYLAAYKVPKVYEFRDEL------PKTTVGKILRRVLIEEEKR  555 (563)
T ss_pred             ----C--------HHHHHHHHH-HhcccccCCcEEEEcccC------CCCccchhhHHHHHHHHhh
Confidence                1        123444443 679999999999987654      9999999999999887654

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=3.1e-59  Score=568.89  Aligned_cols=481  Identities=20%  Similarity=0.234  Sum_probs=394.6

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..++.++|.++++++|+++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus       457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la  527 (1296)
T PRK10252        457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA  527 (1296)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999875   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|++|.++.+++.++++.+++++++++......+...     ... .++....                   
T Consensus       528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~~~~-------------------  582 (1296)
T PRK10252        528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSLCYNA-------------------  582 (1296)
T ss_pred             HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eeeeccc-------------------
Confidence            999999999999999999999999999999999998765544221     111 1111110                   


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (657)
                        ....  ....+.....++++++++|||||||.||||+++|+++.+.+.+....+     ++.++|++++..|++|..+
T Consensus       583 --~~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~  653 (1296)
T PRK10252        583 --PLAP--QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS  653 (1296)
T ss_pred             --cccc--ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence              0000  001111223578999999999999999999999999999988877776     7899999999999999988


Q ss_pred             HHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG  356 (657)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (657)
                      +...+.+|..|+++++.+.    ++..+.+.++++++|++.++|+++..+.+........                    
T Consensus       654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~--------------------  713 (1296)
T PRK10252        654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGAR--------------------  713 (1296)
T ss_pred             HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccccc--------------------
Confidence            8888889999999999763    7899999999999999999999998876532111000                    


Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC------cc
Q 006197          357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE------MC  430 (657)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~------~~  430 (657)
                                          ..++++|.+++||+++++++.+.|.+.++.+++|.||+||++..++......      ..
T Consensus       714 --------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~  773 (1296)
T PRK10252        714 --------------------QSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRG  773 (1296)
T ss_pred             --------------------ccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCC
Confidence                                0014899999999999999999999888999999999999987766544322      22


Q ss_pred             ccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-c------CCccccCceEEEcCC
Q 006197          431 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I------DGWFHTGDIGQILPN  503 (657)
Q Consensus       431 ~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~------~g~~~TGDl~~~~~~  503 (657)
                      ...++|.|++++.++|+| +.+.  +++.|+.|||+|+|++++.||+++++.|.+.| .      ++||+|||+|+++++
T Consensus       774 ~~~~iG~p~~~~~~~i~d-~~~~--~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~  850 (1296)
T PRK10252        774 SSVPIGYPVWNTGLRILD-ARMR--PVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDD  850 (1296)
T ss_pred             CCCCcccccCCCEEEEEC-CCCC--CCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCC
Confidence            236799999999999998 6554  45667899999999999999999999999888 2      249999999999999


Q ss_pred             CcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEec---------CCCCeEEEEEecChhhHHHHHHHCCCC
Q 006197          504 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD---------SLKSMLVAVVVPCEEDTKKWAYSNGHA  574 (657)
Q Consensus       504 G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~---------~~~~~~~a~v~~~~~~~~~~~~~~~~~  574 (657)
                      |.++++||.|++||+ +|++|++.+||++|.+||+|.+++|+..         .....++++|+...+..        . 
T Consensus       851 G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~--------~-  920 (1296)
T PRK10252        851 GAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLP--------L-  920 (1296)
T ss_pred             CcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCC--------C-
Confidence            999999999999998 7999999999999999999999987643         11237999998875420        0 


Q ss_pred             ccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197          575 GSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  639 (657)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~  639 (657)
                             +        .++|+++++ .+||.|++|..++.+++.      |+|++||++|++|.+
T Consensus       921 -------~--------~~~l~~~l~-~~Lp~~~~P~~~~~~~~l------P~t~~GKidr~~L~~  963 (1296)
T PRK10252        921 -------D--------TSALQAQLR-ERLPPHMVPVVLLQLDQL------PLSANGKLDRKALPL  963 (1296)
T ss_pred             -------C--------HHHHHHHHH-hhCchhcCCcEEEEecCC------CCCCCcChhHHhcCC
Confidence                   1        123344443 689999999999987654      999999999999865

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.3e-58  Score=509.20  Aligned_cols=497  Identities=22%  Similarity=0.220  Sum_probs=399.2

Q ss_pred             cCcHHHHHHHH-HHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           41 LNTAWDIFSMS-VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        41 ~~~i~~~l~~~-a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      .+...++++++ ++.+||++|++..    +     +.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~   73 (508)
T TIGR02262         3 YNAAEDLLDRNVVEGRGGKTAFIDD----I-----SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL   73 (508)
T ss_pred             chHHHHHHHHHHhcccCCceEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            46677888887 6779999999753    2     579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++|+++..+.+++.++++.+++++++++......+.+.. ...+....++..+....           ....
T Consensus        74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~  141 (508)
T TIGR02262        74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAAL-GKSPHLEHRVVVGRPEA-----------GEVQ  141 (508)
T ss_pred             HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHH-hcCCCccEEEEeCCCCc-----------cccc
Confidence            99999999999999999999999999999999999987665543321 12234445554443211           1123


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhh-hhhhcccccCCCCCCcEEEEecChhHH
Q 006197          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                      +.++.... ..........++++++++|||||||.||+|++||+++...+.. ....+     ++..+|+++..+|++|.
T Consensus       142 ~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  215 (508)
T TIGR02262       142 LAELLATE-SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFA  215 (508)
T ss_pred             HHHHhhcC-CCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHH
Confidence            33333322 1112223445789999999999999999999999999887765 22333     68889999999999999


Q ss_pred             HHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q 006197          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM  355 (657)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (657)
                      +++.. .+.++..|+++++.+.  ++..+++.|+++++|++.++|.++..+......                       
T Consensus       216 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~-----------------------  272 (508)
T TIGR02262       216 YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL-----------------------  272 (508)
T ss_pred             HHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccc-----------------------
Confidence            99865 4557899999988764  789999999999999999999988776432100                       


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCcc
Q 006197          356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  435 (657)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~  435 (657)
                                         +...+.++|.++++|+++++++.+.|.+.++.++++.||+||++..+..+..... ..+++
T Consensus       273 -------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~-~~~~~  332 (508)
T TIGR02262       273 -------------------PAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDV-RYGTS  332 (508)
T ss_pred             -------------------cccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCC-CCCCc
Confidence                               0001248999999999999999999999899999999999999976655443322 34789


Q ss_pred             CcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcce
Q 006197          436 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL  515 (657)
Q Consensus       436 G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~  515 (657)
                      |.|++++++++++ +++.  +++.++.|||+++|+.++.||+++++.+...|.++||+|||+++++++|.+++.||.+|+
T Consensus       333 G~~~~g~~v~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~~d~  409 (508)
T TIGR02262       333 GKPVPGYRLRLVG-DGGQ--DVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRTDDM  409 (508)
T ss_pred             CCCCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccccce
Confidence            9999999999998 6554  455678999999999999999999999998899999999999999999999999999999


Q ss_pred             eecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHH
Q 006197          516 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  592 (657)
Q Consensus       516 i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (657)
                      |++ +|.++++.+||+.|.++++|.++++++..+.   +.+.+++++.++..                  .   .+.+.+
T Consensus       410 i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------~---~~~~~~  467 (508)
T TIGR02262       410 LKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQD------------------I---DTALET  467 (508)
T ss_pred             eee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCc------------------c---ccccHH
Confidence            997 6999999999999999999999999996543   36778888765420                  0   011233


Q ss_pred             HHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197          593 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  639 (657)
Q Consensus       593 ~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~  639 (657)
                      .|.+.++ ..|+.+++|..+.++++.      |+|++||++|++|++
T Consensus       468 ~i~~~~~-~~l~~~~~p~~i~~~~~i------P~t~~gKi~r~~l~~  507 (508)
T TIGR02262       468 ELKEHVK-DRLAPYKYPRWIVFVDDL------PKTATGKIQRFKLRE  507 (508)
T ss_pred             HHHHHHH-HhcccCCCCceEEEecCC------CCCCCCcEehhhccC
Confidence            4555554 579999999999987654      999999999999875

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-58  Score=508.33  Aligned_cols=479  Identities=21%  Similarity=0.237  Sum_probs=380.2

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...++.+.|...++++|+++|+++.   +      +.+||.||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l  103 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF  103 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4568999999999999999999864   2      479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++|+++..+.+++.++++.++++.+++++.....+....       ..++.++....               
T Consensus       104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~---------------  161 (516)
T PRK13383        104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA---------------  161 (516)
T ss_pred             HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh---------------
Confidence            99999999999999999999999999999999999887665442211       11222221100               


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (657)
                        .. .     .....+...++.++++|||||||.||+|+++|....... .....+.  ..++..+|+++..+|++|.+
T Consensus       162 --~~-~-----~~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~-~~~~~~~--~~~~~~~d~~~~~~pl~h~~  230 (516)
T PRK13383        162 --GA-E-----ESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVG-VWVTILD--RTRLRTGSRISVAMPMFHGL  230 (516)
T ss_pred             --hh-h-----cCCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhh-hHHhHHh--hhccCCCCeEEEecCCcchh
Confidence              00 0     000111234566799999999999999999997432211 1111111  11678899999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCC
Q 006197          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK  358 (657)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (657)
                      ++...+.++..|+++++... ++..+++.++++++|.+.++|.++..+.+.......                       
T Consensus       231 g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----------------------  287 (516)
T PRK13383        231 GLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRA-----------------------  287 (516)
T ss_pred             hHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccc-----------------------
Confidence            99877788999999887665 899999999999999999999999887643211000                       


Q ss_pred             CCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcC
Q 006197          359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV  438 (657)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~  438 (657)
                                       ....+++|.+++||+++++++.++|.+.++.++++.||+||++..+...........+++|.|
T Consensus       288 -----------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~  350 (516)
T PRK13383        288 -----------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKP  350 (516)
T ss_pred             -----------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCC
Confidence                             001148999999999999999999999999999999999999876655443333345799999


Q ss_pred             ccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeec
Q 006197          439 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI  518 (657)
Q Consensus       439 ~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~  518 (657)
                      +++++++|++ +++.  +++.++.|||+++|+.++.||++++.   ..+.+|||+|||+|++|++|++++.||.+|+|++
T Consensus       351 ~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~  424 (516)
T PRK13383        351 VAGCPVRILD-RNNR--PVGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIIS  424 (516)
T ss_pred             CCCcEEEEEC-CCCC--CCCCCCceEEEEecCcccccccCCch---hheecCceecceeEEEcCCccEEEeccccceEEE
Confidence            9999999998 6554  55567899999999999999998753   3346899999999999999999999999999997


Q ss_pred             CCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHH
Q 006197          519 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK  595 (657)
Q Consensus       519 ~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  595 (657)
                       +|.+|+|.+||+.|.+||.|.+++|++.++.   +.+.++|++.+...        .        .        .+.++
T Consensus       425 -~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~--------~--------~--------~~~l~  479 (516)
T PRK13383        425 -GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSG--------V--------D--------AAQLR  479 (516)
T ss_pred             -CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC--------C--------C--------HHHHH
Confidence             8999999999999999999999999996543   47788888765320        0        0        12344


Q ss_pred             HHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006197          596 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  638 (657)
Q Consensus       596 ~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~  638 (657)
                      ++++ ++++.|++|..+.++++.      |+|++||++|++|.
T Consensus       480 ~~~~-~~l~~~~~p~~i~~v~~i------P~t~~gKi~r~~L~  515 (516)
T PRK13383        480 DYLK-DRVSRFEQPRDINIVSSI------PRNPTGKVLRKELP  515 (516)
T ss_pred             HHHH-HhcccCCCCcEEEEeCCC------CCCCCCcCcHHHhC
Confidence            4443 578899999999997654      99999999999873

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-58  Score=512.96  Aligned_cols=515  Identities=20%  Similarity=0.233  Sum_probs=394.7

Q ss_pred             CCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006197           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (657)
Q Consensus        38 ~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~  117 (657)
                      +....++.++|+++++.+|+++|+.+.   +      +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++
T Consensus        29 ~~~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~   99 (567)
T PRK06178         29 PHGERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIV   99 (567)
T ss_pred             CcCcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHH
Confidence            344568999999999999999999875   3      5799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHH-HHHhh----
Q 006197          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK-EMAVQ----  192 (657)
Q Consensus       118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~----  192 (657)
                      ++||+++|++++|++|..+.+++.++++.++++++++++...+.+.+....  .....++.......... .....    
T Consensus       100 ~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~  177 (567)
T PRK06178        100 FFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAE--TSLRHVIVTSLADVLPAEPTLPLPDSL  177 (567)
T ss_pred             HHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhcc--CCcceEEEecccccccccccccccccc
Confidence            999999999999999999999999999999999999998877655433221  12333333221110000 00000    


Q ss_pred             --CCcceeeHHHHHhcCc--cCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcE
Q 006197          193 --TGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  268 (657)
Q Consensus       193 --~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~  268 (657)
                        .......+.+++....  ..........++++++++|||||||.||+|++||+++...........    ..+..+|+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~d~  253 (567)
T PRK06178        178 RAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGEDSV  253 (567)
T ss_pred             ccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCCcE
Confidence              0000011112222111  111122335678999999999999999999999999887655433221    15788999


Q ss_pred             EEEecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006197          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (657)
Q Consensus       269 ~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (657)
                      ++..+|++|.+++.. ++.++..|+++++.+. ++..++..++++++|.+.++|..+..+.....               
T Consensus       254 ~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~---------------  318 (567)
T PRK06178        254 FLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR---------------  318 (567)
T ss_pred             EEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC---------------
Confidence            999999999999864 6678999999998876 89999999999999999999998877653100               


Q ss_pred             HHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEE--EcCCCCCHHHHHHHHHhcCCceee-eccCCCCCCcccc
Q 006197          347 ALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI--SGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTETCGPTTV  423 (657)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~--~~G~~l~~~~~~~~~~~~~~~v~~-~yG~tE~~~~~~~  423 (657)
                                         ....++        ++++.+.  +.++.+++++.+.+++.+|..++. .||+||++..+..
T Consensus       319 -------------------~~~~~l--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~  371 (567)
T PRK06178        319 -------------------FAEYDL--------SSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTF  371 (567)
T ss_pred             -------------------CCCCCc--------chheeeeeccccccCCHHHHHHHHHHhCCccccccccccccccccee
Confidence                               000011        2566554  446899999999999988877765 7999999865443


Q ss_pred             ccC---CC---ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCce
Q 006197          424 CFP---DE---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI  497 (657)
Q Consensus       424 ~~~---~~---~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl  497 (657)
                      ...   ..   ...++++|.|++|++++++| ++.+ .+++.|+.|||+++|++++.||+++++.+...|.+|||+|||+
T Consensus       372 ~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d-~~~~-~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGDl  449 (567)
T PRK06178        372 TAGFQDDDFDLLSQPVFVGLPVPGTEFKICD-FETG-ELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDI  449 (567)
T ss_pred             ccccccCccccccCCcccccccCCcEEEEEc-CCCC-CcCCCCCceEEEEECCcccccccCChhhhhhcccCCceeecce
Confidence            321   11   12346799999999999998 4322 4456678999999999999999999999988888999999999


Q ss_pred             EEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCC
Q 006197          498 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHA  574 (657)
Q Consensus       498 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~  574 (657)
                      ++++++|+++++||.+|+|++ +|.+|+|.+||+++.++++|.+++|++..+.   +.++++|++.++..          
T Consensus       450 ~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------  518 (567)
T PRK06178        450 GKIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGAD----------  518 (567)
T ss_pred             EEEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCc----------
Confidence            999999999999999999997 7999999999999999999999999986543   47888888775320          


Q ss_pred             ccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          575 GSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                      .      .        .+.|++.++ ++++.|++|. +.++++      +|+|++||++|++|+++++++
T Consensus       519 ~------~--------~~~l~~~~~-~~l~~~~~p~-i~~v~~------iP~t~~GKv~r~~l~~~~~~~  566 (567)
T PRK06178        519 L------T--------AAALQAWCR-ENMAVYKVPE-IRIVDA------LPMTATGKVRKQDLQALAEEL  566 (567)
T ss_pred             C------C--------HHHHHHHHH-hcCcccCCce-EEEecc------CCCCCccceeHHHHHHHHHhh
Confidence            0      0        123444444 6799999996 666554      499999999999999988653

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=5.4e-58  Score=510.32  Aligned_cols=510  Identities=23%  Similarity=0.308  Sum_probs=392.8

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~-~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ..++.++|..+++.+|+++|+++.    +     +.+||.||.++++++|.+|+ +.|+++||+|+++++|+++++++++
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   94 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF   94 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            458999999999999999999864    3     58999999999999999997 6899999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcH---HHHH--------
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA---EQKE--------  188 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~--------  188 (657)
                      ||+++|++++|++|..+.+++.+++..++++++++++.....+......  .....++.......   ....        
T Consensus        95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (560)
T PRK08751         95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIAD--TPVKQVITTGLGDMLGFPKAALVNFVVKY  172 (560)
T ss_pred             HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhC--CCccEEEEechhhhcccccchhhhhhhhh
Confidence            9999999999999999999999999999999999988765544332211  11222322210000   0000        


Q ss_pred             HH----hhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCC
Q 006197          189 MA----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (657)
Q Consensus       189 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (657)
                      ..    .........+.+................++++++++|||||||.||+|.+||.++...+......+.... .+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~  251 (560)
T PRK08751        173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTG-KLE  251 (560)
T ss_pred             hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcccc-ccC
Confidence            00    0000112234444443322222233456789999999999999999999999999887765544331110 133


Q ss_pred             C-CcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 006197          265 V-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (657)
Q Consensus       265 ~-~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~  340 (657)
                      . .+++++.+|++|.+++.. .+.++..|+++++...  ++..+++.++++++|++.++|.++..+.+...         
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------  322 (560)
T PRK08751        252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG---------  322 (560)
T ss_pred             CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC---------
Confidence            3 467788899999998864 4556777777766543  78999999999999999999999988764210         


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCc
Q 006197          341 RRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP  420 (657)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~  420 (657)
                                               .+..++        +++|.+++||+++++.+.+.|.+.++.++++.||+||++..
T Consensus       323 -------------------------~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  369 (560)
T PRK08751        323 -------------------------FDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPA  369 (560)
T ss_pred             -------------------------cCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCc
Confidence                                     011112        38999999999999999999999889999999999999887


Q ss_pred             cccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEE
Q 006197          421 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ  499 (657)
Q Consensus       421 ~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~  499 (657)
                      ++.+........+++|.|++++++++++ +++.  +++.++.|||+++|+.++.||+++++.+.+.| .+|||+|||+|+
T Consensus       370 ~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~  446 (560)
T PRK08751        370 ACINPLTLKEYNGSIGLPIPSTDACIKD-DAGT--VLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIAR  446 (560)
T ss_pred             eecccccccccCCCcCccCCCceEEEEC-CCCC--CCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEE
Confidence            6655443334457899999999999998 6554  45566899999999999999999999998888 689999999999


Q ss_pred             EcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCcc
Q 006197          500 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS  576 (657)
Q Consensus       500 ~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~  576 (657)
                      ++++|.+++.||.+|+|++ +|.+|+|.+||+.|..+|+|.+|+|++.++.   +.++++++.....           . 
T Consensus       447 ~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~-----------~-  513 (560)
T PRK08751        447 MDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPA-----------L-  513 (560)
T ss_pred             EcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCC-----------C-
Confidence            9999999999999999997 7999999999999999999999999997653   3566666654311           0 


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006197          577 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  640 (657)
Q Consensus       577 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~  640 (657)
                           .        .+.+++.++ ..++.|++|..+.+++.      +|+|++||++|++|++.
T Consensus       514 -----~--------~~~l~~~~~-~~l~~~~~P~~v~~v~~------lP~t~~gKv~r~~L~~~  557 (560)
T PRK08751        514 -----T--------AEDVKAHAR-ANLTGYKQPRIIEFRKE------LPKTNVGKILRRELRDA  557 (560)
T ss_pred             -----C--------HHHHHHHHH-HhhhhccCCeEEEEhhh------CCCCccccccHHHHHHh
Confidence                 1        112333333 57899999999998765      49999999999999876

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.9e-58  Score=509.27  Aligned_cols=515  Identities=22%  Similarity=0.274  Sum_probs=394.9

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      +.++.++|+.+++++|+++|+.+.    +     +++||.||.++++++|.+|.+ .|+++||+|+++++|++++++++|
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   92 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM----G-----EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF   92 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC----C-----ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            457999999999999999999864    3     579999999999999999984 899999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcH--HHHHHH-------
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQKEMA-------  190 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~-------  190 (657)
                      ||+++|++++|++|..+.+.+.++++.+++++++++.+....+.+....  .....++.......  ......       
T Consensus        93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (560)
T PRK08974         93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKY  170 (560)
T ss_pred             HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhh
Confidence            9999999999999999999999999999999999987654433221110  11222221111000  000000       


Q ss_pred             ------hhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCC
Q 006197          191 ------VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (657)
Q Consensus       191 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (657)
                            ........++.+.................+++++++|||||||.||+|.++|+++..++......+..  ....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~  248 (560)
T PRK08974        171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHP  248 (560)
T ss_pred             cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCC
Confidence                  00000111222222222111111223467899999999999999999999999998876543332210  0234


Q ss_pred             CCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006197          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (657)
Q Consensus       265 ~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~  341 (657)
                      .++.++..+|++|.+++.. .+.++..|+++++...  ++..++..++++++|++.++|+++..+......         
T Consensus       249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~---------  319 (560)
T PRK08974        249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF---------  319 (560)
T ss_pred             CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc---------
Confidence            5678889999999998765 5566888988777643  788899999999999999999999987642100         


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCcc
Q 006197          342 RRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT  421 (657)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~  421 (657)
                                               ...        .++++|.+++||+++++.+.+.|.+.+|.++++.||+||++..+
T Consensus       320 -------------------------~~~--------~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~  366 (560)
T PRK08974        320 -------------------------QEL--------DFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLV  366 (560)
T ss_pred             -------------------------ccC--------CccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCcee
Confidence                                     000        11489999999999999999999998899999999999999877


Q ss_pred             ccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEc
Q 006197          422 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL  501 (657)
Q Consensus       422 ~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~  501 (657)
                      +.+..+.....+++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+++++
T Consensus       367 ~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~  443 (560)
T PRK08974        367 SVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGN--EVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMD  443 (560)
T ss_pred             eccCCCCcccCCccccCcCCCEEEEEC-CCCC--CCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEEEEc
Confidence            766554444458999999999999998 5553  5566789999999999999999999999888889999999999999


Q ss_pred             CCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHH
Q 006197          502 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL  578 (657)
Q Consensus       502 ~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~  578 (657)
                      ++|.++++||.+|+|++ +|.++++.+||+.|.+||+|.+++|++.++.   +.++++++.....         .     
T Consensus       444 ~~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~---------~-----  508 (560)
T PRK08974        444 EEGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPS---------L-----  508 (560)
T ss_pred             CCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCC---------C-----
Confidence            99999999999999997 7999999999999999999999999986643   3566666544321         0     


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006197          579 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  646 (657)
Q Consensus       579 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~  646 (657)
                         ..        +.+.+.+. +.++.|++|..+.++++.      |+|++||++|+.|+++..+.++
T Consensus       509 ---~~--------~~l~~~l~-~~l~~~~~P~~~~~~~~l------P~t~~GK~~r~~l~~~~~~~~~  558 (560)
T PRK08974        509 ---TE--------EELITHCR-RHLTGYKVPKLVEFRDEL------PKSNVGKILRRELRDEARAKVD  558 (560)
T ss_pred             ---CH--------HHHHHHHH-hhcccccCCcEEEEhhhC------CCCCCCcEeHHHHHHHHHhhhc
Confidence               11        12333333 578999999999987654      9999999999999998877654

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.1e-59  Score=616.03  Aligned_cols=485  Identities=20%  Similarity=0.239  Sum_probs=399.8

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      +...+++++|.++++++|+++|+++.   +      +++||+||.++++++|++|.+.|+++|++|+++++|++++++++
T Consensus      2000 ~~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~ 2070 (5163)
T PRK12316       2000 PRGPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVAL 2070 (5163)
T ss_pred             CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34558999999999999999999875   3      57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      |||+++|++++|++|.++.+++.++++.+++++++++......+...     .... .+.++..                
T Consensus      2071 lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~---------------- 2128 (5163)
T PRK12316       2071 LAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD---------------- 2128 (5163)
T ss_pred             HHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch----------------
Confidence            99999999999999999999999999999999999988765433110     0111 1111110                


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                        ..+...  ....+.....++++++|+|||||||.||||+++|+++.+.+......+     ++.++|+++...|++|.
T Consensus      2129 --~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 2199 (5163)
T PRK12316       2129 --AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFD 2199 (5163)
T ss_pred             --hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHH
Confidence              000000  111122345789999999999999999999999999999998877776     78999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q 006197          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM  355 (657)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (657)
                      .+...++.+|..|+++++.+.   ++..+.+.++++++|+++++|+++..|.+.....                      
T Consensus      2200 ~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------- 2257 (5163)
T PRK12316       2200 GAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD---------------------- 2257 (5163)
T ss_pred             HHHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc----------------------
Confidence            888888899999999977653   7889999999999999999999999886532110                      


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCCcc----
Q 006197          356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC----  430 (657)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~----  430 (657)
                                           ...++||.+++||+++++++.+.|.+.+ +..++|.||+||++..++........    
T Consensus      2258 ---------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 2316 (5163)
T PRK12316       2258 ---------------------GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGA 2316 (5163)
T ss_pred             ---------------------cCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccCC
Confidence                                 0113899999999999999999998765 67899999999998876654332211    


Q ss_pred             ccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc--------CCccccCceEEEcC
Q 006197          431 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQILP  502 (657)
Q Consensus       431 ~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDl~~~~~  502 (657)
                      ...++|+|+++++++|+| +++.  +++.|+.|||+|+|+++++||+++++.|.+.|.        ++||+|||+|++++
T Consensus      2317 ~~~~iG~p~~~~~~~i~d-~~~~--~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~ 2393 (5163)
T PRK12316       2317 AYVPIGRALGNRRAYILD-ADLN--LLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRA 2393 (5163)
T ss_pred             CcCCcccccCCCEEEEEC-CCCC--CCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcC
Confidence            125799999999999998 6554  556678999999999999999999999999882        35999999999999


Q ss_pred             CCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCC--CCeEEEEEecChhhHHHHHHHCCCCccHHHH
Q 006197          503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  580 (657)
Q Consensus       503 ~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  580 (657)
                      ||.++++||.||+||+ +|++|++.+||++|.+||+|.+|+|++.++  .+.++|+|++..+..                
T Consensus      2394 dG~l~~~GR~d~~iki-~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~v~~~~~~~---------------- 2456 (5163)
T PRK12316       2394 DGVVEYLGRIDHQVKI-RGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVVPDDAAE---------------- 2456 (5163)
T ss_pred             CCcEEEecCCCCeEEE-cCccCChHHHHHHHhhCcccceEEEEEEecCCCeEEEEEEEecCCCc----------------
Confidence            9999999999999998 799999999999999999999999998543  358999999876420                


Q ss_pred             hccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006197          581 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  641 (657)
Q Consensus       581 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~  641 (657)
                              ...+.|++.++ ..||.|++|..+++++..      |+|++|||+|++|.+..
T Consensus      2457 --------~~~~~l~~~l~-~~Lp~~~vP~~~~~l~~l------P~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2457 --------DLLAELRAWLA-ARLPAYMVPAHWVVLERL------PLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred             --------cCHHHHHHHHH-hhCchhcCcceEeeeccc------CCCCCCccCHhhcCCCc
Confidence                    01233444444 789999999999987654      99999999999997654

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=7e-59  Score=489.55  Aligned_cols=517  Identities=20%  Similarity=0.221  Sum_probs=414.9

Q ss_pred             CCCCCcCcHHHHHH-HHHHc-CCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 006197           36 SVDSDLNTAWDIFS-MSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (657)
Q Consensus        36 ~~~~~~~~i~~~l~-~~a~~-~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e  113 (657)
                      +++....++.+.+. ++.+. .++.+++++.   +..++....+||.|+.+++.++|..|.+.|+++||+|++++|+.++
T Consensus        57 w~~g~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e  133 (626)
T KOG1175|consen   57 WFPGAFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPE  133 (626)
T ss_pred             ccccchhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChH
Confidence            57777777777554 44333 5899999887   4444555569999999999999999998899999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccc------------cccccCceEEEEecC
Q 006197          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD------------CRSAQRLRVMVCFTS  181 (657)
Q Consensus       114 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------------~~~~~~~~~i~~~~~  181 (657)
                      ++++++||.++|++.+++-...++.++...+..++++++++.+..........            ..........+.+..
T Consensus       134 ~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~  213 (626)
T KOG1175|consen  134 AVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSR  213 (626)
T ss_pred             HHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEec
Confidence            99999999999999999999999999999999999999999886443221110            000001111111111


Q ss_pred             CcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhh-hhhhhhccccc
Q 006197          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFE  260 (657)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~-~~~~~~~~~~~  260 (657)
                      ..            ....|+.++... ....++...+.+|+.+|+|||||||.||++.+|+....-.. ......+    
T Consensus       214 ~~------------~d~~~~~~~~~a-~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~----  276 (626)
T KOG1175|consen  214 RN------------RDLFWSLELKKA-SPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF----  276 (626)
T ss_pred             cc------------ccccHHHHhhhc-CCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec----
Confidence            10            123555555444 23334777899999999999999999999999877544444 3334444    


Q ss_pred             CCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHh
Q 006197          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (657)
Q Consensus       261 ~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~  336 (657)
                       ++.++|++++...+.|+.+..+ .+.+|..|+++++++.   ++..+++.+.++++|++++.|+.++.|.+........
T Consensus       277 -d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~  355 (626)
T KOG1175|consen  277 -DLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTS  355 (626)
T ss_pred             -cCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccc
Confidence             8999999999999999999887 4558999999999876   7899999999999999999999999876532221111


Q ss_pred             hchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCC-ceeeeccCC
Q 006197          337 LRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLT  415 (657)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~t  415 (657)
                      ..                                +        ++||.+.++|+++.++..+++.+.++. +|++.||+|
T Consensus       356 ~~--------------------------------~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qt  395 (626)
T KOG1175|consen  356 YS--------------------------------L--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQT  395 (626)
T ss_pred             cc--------------------------------c--------ceEEEEeecCccCCcchHHHHHHhcCccchhhceeee
Confidence            11                                1        389999999999999999999999877 699999999


Q ss_pred             CCCCccccccCCC-ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc--C-CcccccCCCchhhhccc-c--
Q 006197          416 ETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--K-TLFSGYYKNPDLTRESI-I--  488 (657)
Q Consensus       416 E~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g--~-~~~~gy~~~~~~~~~~~-~--  488 (657)
                      |+|+.+..+..+. ...+++.+.|.+++.+.|.| +++...+... +.|+|+++.  | +.+++||++++.....+ .  
T Consensus       396 EtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~  473 (626)
T KOG1175|consen  396 ETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKF  473 (626)
T ss_pred             ccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccC
Confidence            9999998888777 67779999999999999999 6666555544 789999998  3 77899999998555544 3  


Q ss_pred             CCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHH
Q 006197          489 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  565 (657)
Q Consensus       489 ~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~  565 (657)
                      .|||.|||.+++|+||++++.||.||+|++ +|.++.+.|||+++.+||.|.|++|||.+++   +.+.|||++.++.  
T Consensus       474 pg~y~tGD~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~--  550 (626)
T KOG1175|consen  474 PGYYFTGDGGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGS--  550 (626)
T ss_pred             CceEEecCceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCC--
Confidence            799999999999999999999999999997 7999999999999999999999999997764   6999999999864  


Q ss_pred             HHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          566 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                                         ...+.+.++|+.+++ ..+.++..|+.|.+++.+      |+|.+||+.|++|++....+
T Consensus       551 -------------------~~~~~L~kel~~~VR-~~igp~a~P~~I~~v~~L------PkTrSGKimRr~lrki~~g~  603 (626)
T KOG1175|consen  551 -------------------HDPEQLTKELVKHVR-SVIGPYAVPRLIVFVPGL------PKTRSGKIMRRALRKIASGK  603 (626)
T ss_pred             -------------------CChHHHHHHHHHHHH-hhcCcccccceeEecCCC------CccccchhHHHHHHHHhccC
Confidence                               122344555566665 689999999999998765      99999999999999987654

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.5e-58  Score=504.91  Aligned_cols=484  Identities=18%  Similarity=0.190  Sum_probs=373.4

Q ss_pred             HHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEE
Q 006197           50 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV  129 (657)
Q Consensus        50 ~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  129 (657)
                      .+|+++|+++|+++.   ++.    +++||.||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++
T Consensus         5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~   77 (501)
T PRK13390          5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT   77 (501)
T ss_pred             hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            467789999999864   322    6899999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCcc
Q 006197          130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  209 (657)
Q Consensus       130 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  209 (657)
                      ++++.++.+++.+++..+++++++++......... ...   .....+.+.....           ....+++.....  
T Consensus        78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~~~~~~~~~-----------~~~~~~~~~~~~--  140 (501)
T PRK13390         78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAK-VGA---DLPLRLSFGGEID-----------GFGSFEAALAGA--  140 (501)
T ss_pred             ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHH-hhh---ccceEEEecCccc-----------ccccHHHHhccc--
Confidence            99999999999999999999999998754332211 110   1111111111100           011233222211  


Q ss_pred             CCccCCCCCCCceEEEEecCCCCCCCceeee--chHhHHHhhhhh----hhhcccccCCCCCCcEEEEecChhHHHHHHH
Q 006197          210 NEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFVSGV----DLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (657)
Q Consensus       210 ~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~--th~~l~~~~~~~----~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  283 (657)
                      .  + .....++.++++|||||||.||+|++  +|.++.......    ...+     .+..+|+++..+|++|.+++..
T Consensus       141 ~--~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~  212 (501)
T PRK13390        141 G--P-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRW  212 (501)
T ss_pred             C--C-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHH
Confidence            0  0 01122357999999999999999996  455544322111    1122     6788999999999999998876


Q ss_pred             HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCc
Q 006197          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREA  362 (657)
Q Consensus       284 ~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (657)
                      ....+..|+++++.+. ++..+++.|+++++|++.++|+++..+.+......                            
T Consensus       213 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------  264 (501)
T PRK13390        213 CSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR----------------------------  264 (501)
T ss_pred             HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc----------------------------
Confidence            6666778999988775 89999999999999999999999988764211000                            


Q ss_pred             chhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCe
Q 006197          363 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS  442 (657)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~  442 (657)
                          ...+        .+++|.++++|+++++++.+.+.+.++.++++.||+||+++++...........+++|+|+++ 
T Consensus       265 ----~~~~--------~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-  331 (501)
T PRK13390        265 ----TRYD--------VSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-  331 (501)
T ss_pred             ----ccCC--------hhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-
Confidence                0000        137899999999999999999999889999999999999875544332222344789999999 


Q ss_pred             eEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc---CCccccCceEEEcCCCcEEEEecCcceeecC
Q 006197          443 ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  519 (657)
Q Consensus       443 ~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~---~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~  519 (657)
                      ++++++ +++.  +++.|+.|||+++|++++.||+++++.+.+.|.   ++|++|||+|++|++|.+++.||.+|+|++ 
T Consensus       332 ~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~-  407 (501)
T PRK13390        332 DLHICD-DDGN--ELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIIS-  407 (501)
T ss_pred             eEEEEC-CCCC--CCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeE-
Confidence            699998 5554  456778999999999999999999999988773   689999999999999999999999999996 


Q ss_pred             CceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHH
Q 006197          520 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  596 (657)
Q Consensus       520 ~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  596 (657)
                      +|.+|+|.+||++|.+||+|.+|+|++.++.   +.+++++++..+..                 ...    ...++|.+
T Consensus       408 ~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~-----------------~~~----~~~~~l~~  466 (501)
T PRK13390        408 GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIR-----------------GSD----ELARELID  466 (501)
T ss_pred             CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCC-----------------cch----hhHHHHHH
Confidence            7999999999999999999999999997754   47888888765320                 001    11234555


Q ss_pred             HHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006197          597 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  638 (657)
Q Consensus       597 ~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~  638 (657)
                      +++ ..||.|++|..++++++.      |+|++||++|++|+
T Consensus       467 ~~~-~~l~~~~~P~~~~~~~~i------P~t~~GKi~r~~L~  501 (501)
T PRK13390        467 YTR-SRIAHYKAPRSVEFVDEL------PRTPTGKLVKGLLR  501 (501)
T ss_pred             HHH-HhcccCCCCcEEEEeccC------CCCCccceehhhcC
Confidence            554 679999999999997664      99999999999874

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=4.9e-59  Score=604.83  Aligned_cols=497  Identities=21%  Similarity=0.272  Sum_probs=404.7

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...+++++|+++++++|+++|+++.   +      +++||+||.++++++|++|.+.|+++|++|+++++|++++++++|
T Consensus       510 ~~~~~~~~~~~~a~~~pd~~Al~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l  580 (3956)
T PRK12467        510 APDCVHQLIEAQARQHPERPALVFG---E------QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLL  580 (3956)
T ss_pred             CCCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4578999999999999999999875   3      589999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++|++|.++.+++.++++.+++++++++.+....+..     .... .++.++...                
T Consensus       581 ail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~-~~~~~~~~~----------------  638 (3956)
T PRK12467        581 AVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPV-----PAGL-RSLCLDEPA----------------  638 (3956)
T ss_pred             HHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhccc-----ccCc-cEEEecccc----------------
Confidence            999999999999999999999999999999999999865433211     0111 122222110                


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (657)
                        ...... ....+.....++++++++|||||||.||||+++|+++.+.+......+     ++.++|++++..|++|..
T Consensus       639 --~~~~~~-~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~  710 (3956)
T PRK12467        639 --DLLCGY-SGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERL-----QLAADDSMLMVSTFAFDL  710 (3956)
T ss_pred             --cccccc-CCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhc-----CCCCCCEEEEecCccHhH
Confidence              000000 111122345689999999999999999999999999999998877766     789999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q 006197          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM  355 (657)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (657)
                      +....+.++..|+++++.+.    ++..+++.|+++++|++.++|+++..|.+.....                      
T Consensus       711 ~~~~~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----------------------  768 (3956)
T PRK12467        711 GVTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVA----------------------  768 (3956)
T ss_pred             HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc----------------------
Confidence            98888999999999999874    7899999999999999999999999886532100                      


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCCcc---c
Q 006197          356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC---M  431 (657)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~---~  431 (657)
                                            ...++|.+++||+++++++.+.|.+.+ +++++|.||+||+++.++........   .
T Consensus       769 ----------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~  826 (3956)
T PRK12467        769 ----------------------LPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFG  826 (3956)
T ss_pred             ----------------------cCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheeeEecccccccCC
Confidence                                  013679999999999999999998876 78999999999999877665433211   1


Q ss_pred             cCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc--------CCccccCceEEEcCC
Q 006197          432 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQILPN  503 (657)
Q Consensus       432 ~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDl~~~~~~  503 (657)
                      ..++|+|+++++++|+| +++.  +++.|+.|||+|+|+++++||+++++.|.+.|.        ++||+|||+|++++|
T Consensus       827 ~~~iG~p~~~~~~~i~d-~~~~--~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~d  903 (3956)
T PRK12467        827 NVPIGQPLANLGLYILD-HYLN--PVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRAD  903 (3956)
T ss_pred             CCcccCCcCCCEEEEEC-CCCC--CCCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCC
Confidence            25799999999999998 6554  556678999999999999999999999999882        239999999999999


Q ss_pred             CcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCC--CCeEEEEEecChhhHHHHHHHCCCCccHHHHh
Q 006197          504 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  581 (657)
Q Consensus       504 G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  581 (657)
                      |.++++||.||+||+ +|++|+|.+||+.|.+||+|.+|+|++.++  .+.++|++++.....       ..        
T Consensus       904 G~l~~~GR~d~~vki-~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~~~~~-------~~--------  967 (3956)
T PRK12467        904 GVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVAD-------GA--------  967 (3956)
T ss_pred             CcEEEeccccCeEEE-CCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEeccccc-------cc--------
Confidence            999999999999998 799999999999999999999999998542  347899998653210       00        


Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHH
Q 006197          582 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY  649 (657)
Q Consensus       582 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~ly  649 (657)
                          ......+.|++.++ ..||.|++|..++++++.      |+|++||++|++|.+.+.......|
T Consensus       968 ----~~~~~~~~l~~~l~-~~Lp~y~vP~~~~~l~~l------P~t~~GKidR~~L~~~~~~~~~~~~ 1024 (3956)
T PRK12467        968 ----EHQATRDELKAQLR-QVLPDYMVPAHLLLLDSL------PLTPNGKLDRKALPKPDASAVQATF 1024 (3956)
T ss_pred             ----ccccCHHHHHHHHH-hhCchhcCCceEeeeccc------CCCCCCCcCHhhcCCcccccccccc
Confidence                00111234555554 689999999999987664      9999999999999876654433333

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=2.4e-58  Score=496.64  Aligned_cols=426  Identities=20%  Similarity=0.228  Sum_probs=345.7

Q ss_pred             EeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEE
Q 006197           76 WKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (657)
Q Consensus        76 ~~Ty~el~~~v~~lA~~L~~~G~-~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~  154 (657)
                      -+.|+||.++++++|++|.+.|+ .+|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~   98 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG   98 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence            37899999999999999999987 57999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCC
Q 006197          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (657)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~  234 (657)
                      +.+.....                ....                .         .   ......++++++++|||||||.
T Consensus        99 ~~~~~~~~----------------~~~~----------------~---------~---~~~~~~~~~~~~i~~TSGTTG~  134 (452)
T PRK07445         99 LDQLKLSH----------------PPPL----------------P---------S---QGILPNLETGWIMIPTGGSSGQ  134 (452)
T ss_pred             cCcccccc----------------CCCC----------------C---------c---cccCCCCCCcEEEEeCCCCCCC
Confidence            76532100                0000                0         0   0011346899999999999999


Q ss_pred             CceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcC
Q 006197          235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKP  313 (657)
Q Consensus       235 pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~  313 (657)
                      ||+|++||+++...+......+     ++.+ ++.++.+|++|.+|+...+.++..|+++++.+. ..........++++
T Consensus       135 PKgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~  208 (452)
T PRK07445        135 IRFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSD  208 (452)
T ss_pred             CcEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCc
Confidence            9999999999988877766555     4544 467889999999999877888999999998864 23333344457889


Q ss_pred             eEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCC
Q 006197          314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS  393 (657)
Q Consensus       314 t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~  393 (657)
                      |+++++|+++..+.+...                                             ..++++|.+++||++++
T Consensus       209 t~~~~vP~~l~~l~~~~~---------------------------------------------~~l~~l~~i~~gG~~l~  243 (452)
T PRK07445        209 FFLSLVPTQLQRLLQLRP---------------------------------------------QWLAQFRTILLGGAPAW  243 (452)
T ss_pred             eEEEehHHHHHHHHhhCh---------------------------------------------hhhhcceEEEECCccCC
Confidence            999999999998764100                                             00138999999999999


Q ss_pred             HHHHHHHHHhcCCceeeeccCCCCCCccccccCCC-ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCc
Q 006197          394 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL  472 (657)
Q Consensus       394 ~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~  472 (657)
                      +++.+.+.+ ++.++++.||+||++..++...... ....+++|+|+++++++|++           ++.|||+++||.+
T Consensus       244 ~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g~~~  311 (452)
T PRK07445        244 PSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQAQSL  311 (452)
T ss_pred             HHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeCCcc
Confidence            999988876 4899999999999986554433322 22347899999999999972           2479999999999


Q ss_pred             ccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC--
Q 006197          473 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--  550 (657)
Q Consensus       473 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~--  550 (657)
                      +.||++++..     .+|||+|||+|++|+||++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++  
T Consensus       312 ~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~  385 (452)
T PRK07445        312 ALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDPHW  385 (452)
T ss_pred             chhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCcCC
Confidence            9999975421     3799999999999999999999999999996 8999999999999999999999999997754  


Q ss_pred             -CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccc
Q 006197          551 -SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTAT  629 (657)
Q Consensus       551 -~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~  629 (657)
                       +.++|+++..++..                 .        .++++++++ +.|+.|++|+.++++++.      |+|++
T Consensus       386 g~~~~a~vv~~~~~~-----------------~--------~~~l~~~~~-~~L~~~~~P~~i~~v~~l------P~t~~  433 (452)
T PRK07445        386 GEVVTAIYVPKDPSI-----------------S--------LEELKTAIK-DQLSPFKQPKHWIPVPQL------PRNPQ  433 (452)
T ss_pred             CcEEEEEEEeCCCCC-----------------C--------HHHHHHHHH-HhCCcccCCeEEEEecCC------CCCCC
Confidence             47888888765320                 1        123344443 679999999999997664      99999


Q ss_pred             cccchHHHHHHHHHHHH
Q 006197          630 LKKKRNKLLIYYQVEID  646 (657)
Q Consensus       630 GKv~r~~l~~~~~~~i~  646 (657)
                      ||++|++|++++.++|+
T Consensus       434 GKi~r~~L~~~~~~~~~  450 (452)
T PRK07445        434 GKINRQQLQQIAVQRLG  450 (452)
T ss_pred             cccCHHHHHHHHHHhhC
Confidence            99999999999998775

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.1e-57  Score=501.94  Aligned_cols=483  Identities=19%  Similarity=0.200  Sum_probs=392.2

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      .++.++|+++++.+|+++++...    +     +++||.||.+.++++|.+|.+.|+.+|++|+++++|+.+++++++||
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~----~-----~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~   72 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYL----G-----EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGA   72 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            57889999999999999998764    3     58999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006197          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (657)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (657)
                      +++|++++|+++..+.+.+..+++.+++++++++.......        ... .++                     .++
T Consensus        73 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~---------------------~~~  122 (503)
T PRK04813         73 VKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-PVI---------------------TLD  122 (503)
T ss_pred             HHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-cEE---------------------ehH
Confidence            99999999999999999999999999999999987651100        001 111                     111


Q ss_pred             HHHhcC--ccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197          202 EFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (657)
Q Consensus       202 ~l~~~~--~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (657)
                      ++....  ...........++++++++|||||||.||+|.++|+++..........+     .+..++++++.+|++|..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~  197 (503)
T PRK04813        123 ELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFDL  197 (503)
T ss_pred             HhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchhH
Confidence            111110  0111112334678899999999999999999999999998887766555     788999999999999998


Q ss_pred             HHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q 006197          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM  355 (657)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (657)
                      +....+.++..|+++++.+.    ++..+++.+.++++|++..+|+++..+......                       
T Consensus       198 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~-----------------------  254 (503)
T PRK04813        198 SVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSF-----------------------  254 (503)
T ss_pred             hHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhcc-----------------------
Confidence            88777888999999998775    788999999999999999999998775432110                       


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC----cc
Q 006197          356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MC  430 (657)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~----~~  430 (657)
                                         .+...+++|.++++|+++++.+.+.+.+.+ +.++++.||+||++..++......    ..
T Consensus       255 -------------------~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  315 (503)
T PRK04813        255 -------------------NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQY  315 (503)
T ss_pred             -------------------CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccC
Confidence                               001124899999999999999999999888 788999999999987555433221    12


Q ss_pred             ccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc--C--CccccCceEEEcCCCcE
Q 006197          431 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGDIGQILPNGVV  506 (657)
Q Consensus       431 ~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~--~--g~~~TGDl~~~~~~G~l  506 (657)
                      ...++|.+.++++++|++ +++.  +++.++.|||+++|+.++.||+++++.+...|.  +  +||+|||+|++ .+|++
T Consensus       316 ~~~~~g~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~  391 (503)
T PRK04813        316 KRLPIGYAKPDSPLLIID-EEGT--KLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLL  391 (503)
T ss_pred             CCCcccccCCCCEEEEEC-CCCC--CCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeE
Confidence            235799999999999998 5554  445668999999999999999999999988772  3  49999999999 89999


Q ss_pred             EEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhcc
Q 006197          507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  583 (657)
Q Consensus       507 ~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (657)
                      ++.||.+|+|++ +|.++++.+||+.+.++|+|.+++|++.++.   +.+++++++.++...                  
T Consensus       392 ~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~------------------  452 (503)
T PRK04813        392 FYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE------------------  452 (503)
T ss_pred             EEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccccc------------------
Confidence            999999999997 8999999999999999999999999985533   478888887764210                  


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          584 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       584 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                        ....+.+.++++++ ..++.|++|..+.++++.      |+|++||++|++|++++.
T Consensus       453 --~~~~~~~~l~~~~~-~~l~~~~~P~~i~~~~~~------P~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        453 --REFELTKAIKKELK-ERLMEYMIPRKFIYRDSL------PLTPNGKIDRKALIEEVN  502 (503)
T ss_pred             --ccchhHHHHHHHHH-hhCccccCCeEEEEeccC------CCCCCCCCcHHHHHHHhc
Confidence              01123345555554 579999999999987654      999999999999998875

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=5.8e-59  Score=613.42  Aligned_cols=502  Identities=21%  Similarity=0.261  Sum_probs=413.1

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      +...+++++|+.+++++|+++|+++.   +      +++||+||.++++++|++|.+.|+++|++|+|+++|++++++++
T Consensus      4548 ~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~ 4618 (5163)
T PRK12316       4548 PATRCVHQLVAERARMTPDAVAVVFD---E------EKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGL 4618 (5163)
T ss_pred             CccccHHHHHHHHHHhCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34568999999999999999999875   3      57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      |||+++|++++|++|.++.+++.++++.++++++|++......+...     ... .++.++...               
T Consensus      4619 lavl~aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~-~~~~~~~~~--------------- 4677 (5163)
T PRK12316       4619 LAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPIP-----DGL-ASLALDRDE--------------- 4677 (5163)
T ss_pred             HHHHHhCcEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhcccc-----cCc-ceEeecchh---------------
Confidence            99999999999999999999999999999999999988765543110     011 111211110               


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                         .+ . ......+.....++++++++|||||||.||||+++|+++.+.+......+     ++.++|++++..|++|.
T Consensus      4678 ---~~-~-~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 4747 (5163)
T PRK12316       4678 ---DW-E-GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERY-----ELTPDDRVLQFMSFSFD 4747 (5163)
T ss_pred             ---hc-c-cCCccCCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhc-----CCCcCCeEEEecCcchh
Confidence               00 0 00111222345688999999999999999999999999999988877766     78999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q 006197          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM  355 (657)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (657)
                      .+....+.+|..|+++++.+.   ++..+++.|+++++|+++++|++++.|.+.....                      
T Consensus      4748 ~~~~~~~~~L~~G~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~---------------------- 4805 (5163)
T PRK12316       4748 GSHEGLYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERD---------------------- 4805 (5163)
T ss_pred             hHHHHHHHHHhCCCEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhccc----------------------
Confidence            988888889999999999875   6899999999999999999999999886532110                      


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC----cc
Q 006197          356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MC  430 (657)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~----~~  430 (657)
                                           ...++||.+++||+++++++.+.+.+.+ +++++|.||+||+++.++......    ..
T Consensus      4806 ---------------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 4864 (5163)
T PRK12316       4806 ---------------------GEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGA 4864 (5163)
T ss_pred             ---------------------cCCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCC
Confidence                                 0114899999999999999998776655 788999999999998776554322    12


Q ss_pred             ccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc--------CCccccCceEEEcC
Q 006197          431 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQILP  502 (657)
Q Consensus       431 ~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDl~~~~~  502 (657)
                      ...++|+|+++++++|+| +++.  +++.|+.|||+|+|++++.||+++++.|.+.|.        ++||+|||+|++++
T Consensus      4865 ~~~~iG~p~~~~~~~i~d-~~~~--~~p~g~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~ 4941 (5163)
T PRK12316       4865 AYMPIGTPLGNRSGYVLD-GQLN--PLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRA 4941 (5163)
T ss_pred             CCCcccccccCCEEEEEC-CCCC--cCCCCCCceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecCceeEECC
Confidence            346899999999999998 5554  556678999999999999999999999999882        25999999999999


Q ss_pred             CCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCC--CCeEEEEEecChhhHHHHHHHCCCCccHHHH
Q 006197          503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  580 (657)
Q Consensus       503 ~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  580 (657)
                      +|.++++||.||+||+ +|++|+|.+||+.|.+||+|.+|+|++.++  .+.++++|++......               
T Consensus      4942 dG~l~~~GR~d~~iki-~G~ri~~~eIE~~l~~~p~V~~a~v~~~~~~~~~~l~a~v~~~~~~~~--------------- 5005 (5163)
T PRK12316       4942 DGVIDYLGRVDHQVKI-RGFRIELGEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALA--------------- 5005 (5163)
T ss_pred             CCcEEEeccccceEee-ccEeecHHHHHHHHHhCCCcceEEEEEeeCCCCcEEEEEEeCCccccc---------------
Confidence            9999999999999998 799999999999999999999999998654  3478999988754210               


Q ss_pred             hccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHh
Q 006197          581 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE  650 (657)
Q Consensus       581 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~ly~  650 (657)
                       ...+....+.+.|++.+. ..||.|++|..++++++      +|+|++||++|++|.+.+...+++.|.
T Consensus      5006 -~~~~~~~~~~~~l~~~l~-~~lp~y~vP~~~~~~~~------lP~t~~GKvdR~~L~~~~~~~~~~~~~ 5067 (5163)
T PRK12316       5006 -DADEAQAELRDELKAALR-ERLPEYMVPAHLVFLAR------MPLTPNGKLDRKALPQPDASLLQQAYV 5067 (5163)
T ss_pred             -cccccchhhHHHHHHHHh-ccCchhhCCcceeeccc------CCCCCCcccChhhcCCccccccccccC
Confidence             111223345566777775 78999999999988765      499999999999999988777766664

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.6e-58  Score=498.42  Aligned_cols=454  Identities=26%  Similarity=0.268  Sum_probs=369.0

Q ss_pred             HHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEe
Q 006197           51 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP  130 (657)
Q Consensus        51 ~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  130 (657)
                      .+...++++|++..    +     +++||.||.++++++|..|.     ++|+|+++++|+++++++++||+++|++++|
T Consensus         9 ~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~   74 (471)
T PRK07787          9 VAAAADIADAVRIG----G-----RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVP   74 (471)
T ss_pred             hhcccCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEee
Confidence            34567899999874    3     68999999999999999996     4699999999999999999999999999999


Q ss_pred             ccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccC
Q 006197          131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  210 (657)
Q Consensus       131 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  210 (657)
                      +++..+.+++..+++.+++++++++.+...          ..+..... ...              ...           
T Consensus        75 l~~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~~-~~~--------------~~~-----------  118 (471)
T PRK07787         75 VPPDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVPV-RLH--------------ARS-----------  118 (471)
T ss_pred             cCCCCChHHHHHHHHhcCCCEEEecCCccc----------ccccceee-ecc--------------ccc-----------
Confidence            999999999999999999999999764110          00000000 000              000           


Q ss_pred             CccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHHh
Q 006197          211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFR  289 (657)
Q Consensus       211 ~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~  289 (657)
                      ........++++++++|||||||.||+|.++|+++...+..+...+     .+.++|++++.+|++|.+++.. .+.++.
T Consensus       119 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~  193 (471)
T PRK07787        119 WHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLR  193 (471)
T ss_pred             cccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHh
Confidence            0011124578999999999999999999999999999887766665     6788999999999999999876 566799


Q ss_pred             cCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHH
Q 006197          290 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADL  368 (657)
Q Consensus       290 ~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (657)
                      .|+++++.+. ++..+++.++ +++|++.++|.++..+.+....                                    
T Consensus       194 ~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~------------------------------------  236 (471)
T PRK07787        194 IGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA------------------------------------  236 (471)
T ss_pred             cCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc------------------------------------
Confidence            9999988765 8999999999 9999999999999887642100                                    


Q ss_pred             HHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEee
Q 006197          369 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE  448 (657)
Q Consensus       369 ~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~  448 (657)
                             ...++++|.+++||+++++++.+++.+.++.++++.||+||++...+.... .....+++|.|+++++++|++
T Consensus       237 -------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~g~~~~i~d  308 (471)
T PRK07787        237 -------ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD-GERRPGWVGLPLAGVETRLVD  308 (471)
T ss_pred             -------cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC-CcccCCcccccCCCcEEEEEC
Confidence                   001148999999999999999999999889999999999999875544333 233347899999999999998


Q ss_pred             cCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecC-cceeecCCceeecc
Q 006197          449 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYVAL  526 (657)
Q Consensus       449 ~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~-~d~i~~~~G~~v~~  526 (657)
                       +++..++.+.+..|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||.++++||. +|+++. +|.+|+|
T Consensus       309 -~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v~~  386 (471)
T PRK07787        309 -EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRIGA  386 (471)
T ss_pred             -CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEECH
Confidence             66654443233489999999999999999999999888 5899999999999999999999996 889996 8999999


Q ss_pred             HHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCC
Q 006197          527 EYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKL  603 (657)
Q Consensus       527 ~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  603 (657)
                      .+||+.|.+++.|.+++|++.++.   +.++++|++..+.                  ..        +++.+.++ +.|
T Consensus       387 ~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~~--------~~l~~~l~-~~l  439 (471)
T PRK07787        387 GEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV------------------AA--------DELIDFVA-QQL  439 (471)
T ss_pred             HHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCC------------------CH--------HHHHHHHH-hhc
Confidence            999999999999999999997654   4788888874321                  11        22334443 679


Q ss_pred             CCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197          604 RGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  639 (657)
Q Consensus       604 ~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~  639 (657)
                      ++|++|..+++++.      +|+|.+||++|++|++
T Consensus       440 ~~~~~P~~i~~~~~------iP~~~~GKi~r~~L~~  469 (471)
T PRK07787        440 SVHKRPREVRFVDA------LPRNAMGKVLKKQLLS  469 (471)
T ss_pred             ccccCCcEEEEecc------CCCCCCccccHHHhcc
Confidence            99999999998765      4999999999999975

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.9e-57  Score=501.98  Aligned_cols=509  Identities=24%  Similarity=0.268  Sum_probs=382.2

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      .++.+.|+..++.+|+++|+.+.    +     ..+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~   88 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG----D-----RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV   88 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC----C-----eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            57889999999999999999864    2     57999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006197          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (657)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (657)
                      +++|++++|+++..+.+++..+++.++++.++++.+....+.+... ..+.. ..+.++......   .........++.
T Consensus        89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~  163 (545)
T PRK08162         89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALA-LLPGP-KPLVIDVDDPEY---PGGRFIGALDYE  163 (545)
T ss_pred             HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHh-hCCCC-ceEEEecCcccc---ccCCCcccccHH
Confidence            9999999999999999999999999999999999887655433221 11111 112222111000   000011223455


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 006197          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (657)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (657)
                      +++...........+...+++++++|||||||.||+|+++|+++...+......+     .+..++++++.+|++|.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~  238 (545)
T PRK08162        164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGW  238 (545)
T ss_pred             HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhH
Confidence            5554321111111123456789999999999999999999998876665543333     57788999999999999988


Q ss_pred             HHHHHHHhcCcEEEEe-cCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCC
Q 006197          282 VIEEYFFRRGASVGYY-HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQR  360 (657)
Q Consensus       282 ~~~~~~l~~G~~~v~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (657)
                      ...+.....|++.++. ..++..+++.++++++|++.++|.++..|.+......                          
T Consensus       239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------  292 (545)
T PRK08162        239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWR--------------------------  292 (545)
T ss_pred             HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccc--------------------------
Confidence            7655443445444444 4499999999999999999999999998875311100                          


Q ss_pred             CcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC----------cc
Q 006197          361 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----------MC  430 (657)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~----------~~  430 (657)
                                      ..+.+++.++++|+.+++.+.+.+.+. +.++++.||+||+++.+..+....          ..
T Consensus       293 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~  355 (545)
T PRK08162        293 ----------------AGIDHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQ  355 (545)
T ss_pred             ----------------cCCccceEEEECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccchhh
Confidence                            000145567899999999999988774 899999999999976555432211          01


Q ss_pred             ccCccCcCcc-CeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEE
Q 006197          431 MVGTAGPVSV-YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII  509 (657)
Q Consensus       431 ~~~~~G~~~~-~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~  509 (657)
                      ..++.|.+.+ +..++++|.+++..++.+.++.|||+++|+.++.||+++++.+...|.+|||+|||+|++|++|.++++
T Consensus       356 ~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l~~~  435 (545)
T PRK08162        356 LKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIK  435 (545)
T ss_pred             ccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCccEEEE
Confidence            1245566654 345778872233322222234799999999999999999999999999999999999999999999999


Q ss_pred             ecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHH
Q 006197          510 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  586 (657)
Q Consensus       510 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (657)
                      ||.+|+|++ +|.+|+|.+||+.|.++|+|.+|+|++.++.   +.+++++++.++..          .      .    
T Consensus       436 GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~----------~------~----  494 (545)
T PRK08162        436 DRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGAS----------A------T----  494 (545)
T ss_pred             ecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCC----------C------C----
Confidence            999999996 8999999999999999999999999986543   47888888775420          0      1    


Q ss_pred             HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          587 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       587 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                          .+.++++++ ..||.|++|..+.+. +      +|+|++||++|+.|++++..+-
T Consensus       495 ----~~~l~~~~~-~~l~~~~~P~~~~~~-~------iP~t~~gK~~r~~l~~~~~~l~  541 (545)
T PRK08162        495 ----EEEIIAHCR-EHLAGFKVPKAVVFG-E------LPKTSTGKIQKFVLREQAKSLK  541 (545)
T ss_pred             ----HHHHHHHHH-HhcccccCCcEEEec-c------cCCCCCcCCcHHHHHHHHhhhh
Confidence                123344443 578999999988753 2      4899999999999998876643

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=1.3e-57  Score=547.01  Aligned_cols=498  Identities=18%  Similarity=0.164  Sum_probs=385.7

Q ss_pred             CCcCcHHHHHHHHHHcCC-CCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYP-GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p-~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~  117 (657)
                      +...++.+.|.+.++++| +++++.+.   ++     +++||+||.++++++|++|++ |+++||+|+++++|+++++++
T Consensus       628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~  698 (1140)
T PRK06814        628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT  698 (1140)
T ss_pred             cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence            345678888888888886 45666542   22     579999999999999999975 999999999999999999999


Q ss_pred             HHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhh-ccccccccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (657)
Q Consensus       118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (657)
                      ++||+++|++++|+|+..+.+++.++++.+++++++++.+..+... ............++..++.....        ..
T Consensus       699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~  770 (1140)
T PRK06814        699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQI--------GL  770 (1140)
T ss_pred             HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccC--------Ch
Confidence            9999999999999999999999999999999999999876554321 00001111222344443211000        00


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                      ...+.+..... ..........++|+++++|||||||.||+|++||+++.+.+......+     ++.++|++++.+|++
T Consensus       771 ~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~  844 (1140)
T PRK06814        771 ADKIKGLLAGR-FPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVF  844 (1140)
T ss_pred             HHHHHHHhhcc-CCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchH
Confidence            00011111111 001111134679999999999999999999999999998888776666     788999999999999


Q ss_pred             HHHHHH-HHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197          277 HILDRV-IEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM  353 (657)
Q Consensus       277 ~~~g~~-~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (657)
                      |.+++. ..+.++..|+++++.+.  +...+.+.++++++|++.++|+++..+.+...                      
T Consensus       845 h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~----------------------  902 (1140)
T PRK06814        845 HSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH----------------------  902 (1140)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc----------------------
Confidence            999985 46678999999998764  56778899999999999999999887754210                      


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccC
Q 006197          354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  433 (657)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~  433 (657)
                                    .        ...+++|.+++||+++++++.+.+.+.++.++++.||+||++..+..+.... ...+
T Consensus       903 --------------~--------~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~  959 (1140)
T PRK06814        903 --------------P--------YDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH-NKAG  959 (1140)
T ss_pred             --------------c--------ccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-CCCC
Confidence                          0        0114899999999999999999999988999999999999998766544322 3347


Q ss_pred             ccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhh-ccccCCccccCceEEEcCCCcEEEEecC
Q 006197          434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDRK  512 (657)
Q Consensus       434 ~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~-~~~~~g~~~TGDl~~~~~~G~l~i~GR~  512 (657)
                      ++|+|++++++++++ .++      .++.|||+++|++++.||+++++... ....+|||+|||+|++|+||++++.||.
T Consensus       960 ~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~ 1032 (1140)
T PRK06814        960 TVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRA 1032 (1140)
T ss_pred             cCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecc
Confidence            999999999999987 322      24679999999999999998764332 2236899999999999999999999999


Q ss_pred             cceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHH
Q 006197          513 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  589 (657)
Q Consensus       513 ~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (657)
                      ||+|++ +|++|+|.+||+.+.+|+.|.+++|++.+++   +.+++++...+ .                  +       
T Consensus      1033 ~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~-~------------------~------- 1085 (1140)
T PRK06814       1033 KRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASD-A------------------T------- 1085 (1140)
T ss_pred             cCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCC-c------------------C-------
Confidence            999997 8999999999999999999999999997654   35555543211 1                  1       


Q ss_pred             HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          590 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       590 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                       .+++.+++++..+|+|++|+.+.++++.      |+|++||++|++|++++.+..
T Consensus      1086 -~~~l~~~~~~~~l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~~ 1134 (1140)
T PRK06814       1086 -RAAFLAHAKAAGASELMVPAEIITIDEI------PLLGTGKIDYVAVTKLAEEAA 1134 (1140)
T ss_pred             -HHHHHHHHHHcCCCcccCCcEEEEecCc------CCCCCCCCcHHHHHHHHHHhh
Confidence             1234445544579999999999987664      999999999999998877654

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=8e-58  Score=496.12  Aligned_cols=449  Identities=24%  Similarity=0.293  Sum_probs=369.7

Q ss_pred             CcHHHHH-HHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           42 NTAWDIF-SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        42 ~~i~~~l-~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      +++.+.+ ..+++++|+++|+.+.    +     +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la   72 (458)
T PRK09029          2 MIFSDWPWRHWAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA   72 (458)
T ss_pred             chhhcChHHHHHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence            3445544 5668899999999863    3     5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|+++..+.+++..+++.+++++++++.+... +..        +...                      .+
T Consensus        73 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~----------------------~~  121 (458)
T PRK09029         73 LLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSL----------------------HL  121 (458)
T ss_pred             HHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------cccc----------------------cc
Confidence            9999999999999999999999999999999998766422 100        0000                      00


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (657)
                      .   .   ..........++++++++|||||||.||+|.+||+++...+......+     +...+|+++..+|++|.++
T Consensus       122 ~---~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g  190 (458)
T PRK09029        122 Q---L---VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSG  190 (458)
T ss_pred             c---c---ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhh
Confidence            0   0   001111234678899999999999999999999999999988776666     7888999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCC
Q 006197          281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQR  360 (657)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (657)
                      +...+.++..|+++++.+.  ..+...+  .++|.+..+|+++..+......                            
T Consensus       191 ~~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----------------------------  238 (458)
T PRK09029        191 QGIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----------------------------  238 (458)
T ss_pred             hHHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc----------------------------
Confidence            8777778999999988764  5566666  4789999999998887642110                            


Q ss_pred             CcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCcc
Q 006197          361 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  440 (657)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~  440 (657)
                                        ..++|.+++||+++++.+.+.+.+. +.++++.||+||++...+.....  . ..++|.|++
T Consensus       239 ------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~--~-~~~~G~~~~  296 (458)
T PRK09029        239 ------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRAD--G-LAGVGSPLP  296 (458)
T ss_pred             ------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCCC--C-CCCCCCCCC
Confidence                              0278999999999999999998864 99999999999998765543322  1 257999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCC
Q 006197          441 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ  520 (657)
Q Consensus       441 ~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~  520 (657)
                      ++++++++              |||+++|+.++.||+++++.+.....+|||+|||+|++| +|.+++.||.+|+|++ +
T Consensus       297 ~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~-~  360 (458)
T PRK09029        297 GREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFS-G  360 (458)
T ss_pred             CCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEecccccceee-C
Confidence            99999986              999999999999999998887665578999999999999 9999999999999997 7


Q ss_pred             ceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHH
Q 006197          521 GEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  597 (657)
Q Consensus       521 G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  597 (657)
                      |.+|+|.+||+.|++||+|.+|+|++.++.   +.++++|++....                  .        .++|+++
T Consensus       361 G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~--------~~~l~~~  414 (458)
T PRK09029        361 GEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA------------------A--------VVNLAEW  414 (458)
T ss_pred             CEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCccc------------------C--------HHHHHHH
Confidence            999999999999999999999999997765   4788888876321                  1        1234444


Q ss_pred             HHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       598 ~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                      ++ ++||.|++|..+.+++..      |+|.+||++|+.|+++++..
T Consensus       415 ~~-~~l~~~~~P~~~~~~~~~------p~t~~gKi~r~~L~~~~~~~  454 (458)
T PRK09029        415 LQ-DKLARFQQPVAYYLLPPE------LKNGGIKISRQALKEWVAQQ  454 (458)
T ss_pred             HH-hhchhccCCeEEEEeccc------ccCcCCCcCHHHHHHHHHhc
Confidence            43 689999999999997654      79999999999999888754

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=3.7e-58  Score=601.90  Aligned_cols=490  Identities=18%  Similarity=0.159  Sum_probs=399.7

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      +...+++++|.++++++|+++|+++.   +      .++||+||.++++++|++|.+.|+++|++|+|++++++++++++
T Consensus      3717 ~~~~~~~~~~~~~~~~~p~~~Av~~~---~------~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~ 3787 (4334)
T PRK05691       3717 PLEQSYVRLFEAQVAAHPQRIAASCL---D------QQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMI 3787 (4334)
T ss_pred             ccccCHHHHHHHHHHhCCCceEEEcC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34569999999999999999999986   4      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccc-cCceEEEEecCCcHHHHHHHhhCCcce
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (657)
                      |||+++|++++|++|.+|.+++.++++.+++++++++............... .....++..+..               
T Consensus      3788 lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 3852 (4334)
T PRK05691       3788 VGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEV--------------- 3852 (4334)
T ss_pred             HHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeeccc---------------
Confidence            9999999999999999999999999999999999999876543221111000 011111111110               


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006197          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (657)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~  277 (657)
                            .........+.....+++.++|+|||||||.||||+++|+++.+.+.+....+     +++++|+++...++++
T Consensus      3853 ------~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~f 3921 (4334)
T PRK05691       3853 ------QAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSF 3921 (4334)
T ss_pred             ------ccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCch
Confidence                  00000111122345688999999999999999999999999999998877777     8999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197          278 ILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM  353 (657)
Q Consensus       278 ~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (657)
                      ..+....+.++..|+++++++.    ++..+.+.++++++|++.++|+++..+......                     
T Consensus      3922 d~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~--------------------- 3980 (4334)
T PRK05691       3922 DISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ--------------------- 3980 (4334)
T ss_pred             hHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc---------------------
Confidence            9998889999999999998874    688999999999999999999999887532100                     


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC---c
Q 006197          354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M  429 (657)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---~  429 (657)
                                              ..++||.+++||+++++++.+.|.+.. ++.++|.||+||++..++......   .
T Consensus      3981 ------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~ 4036 (4334)
T PRK05691       3981 ------------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTR 4036 (4334)
T ss_pred             ------------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccccccc
Confidence                                    014899999999999999999997765 788999999999998776544322   1


Q ss_pred             cccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc--------CCccccCceEEEc
Q 006197          430 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQIL  501 (657)
Q Consensus       430 ~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDl~~~~  501 (657)
                      ....++|+|++++.++|+| +.+.  +++.|..|||+|+|+++++||+++++.|.++|.        ++||+|||+|+++
T Consensus      4037 ~~~~~iG~p~~~~~~~v~d-~~~~--~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~ 4113 (4334)
T PRK05691       4037 GSYLPIGSPTDNNRLYLLD-EALE--LVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRR 4113 (4334)
T ss_pred             CCcCCCCCccCCCEEEEEC-CCCC--CCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeec
Confidence            1225799999999999998 5554  445568999999999999999999999999982        4699999999999


Q ss_pred             CCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecC--CCCeEEEEEecChhhHHHHHHHCCCCccHHH
Q 006197          502 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LKSMLVAVVVPCEEDTKKWAYSNGHAGSFLE  579 (657)
Q Consensus       502 ~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~--~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  579 (657)
                      +||.++++||.|++||+ +|++|.+.+||+.|.++|+|.+|+|+...  ..+.++|+++......               
T Consensus      4114 ~dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~--------------- 4177 (4334)
T PRK05691       4114 SDGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVL--------------- 4177 (4334)
T ss_pred             CCCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccc---------------
Confidence            99999999999999998 79999999999999999999999987532  2458999998875420               


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006197          580 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  640 (657)
Q Consensus       580 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~  640 (657)
                        ...+.    .+.|++.++ +.||.|++|..++.+++.      |+|++|||||++|.+.
T Consensus      4178 --~~~~~----~~~l~~~l~-~~Lp~ymvP~~~~~~~~l------P~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4178 --AQGAL----LERIKQRLR-AELPDYMVPLHWLWLDRL------PLNANGKLDRKALPAL 4225 (4334)
T ss_pred             --cchHH----HHHHHHHHH-hhCChhhcCcceeecccC------CCCCCCcccHhhcCCC
Confidence              11112    233444544 789999999999887654      9999999999999764

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-56  Score=496.66  Aligned_cols=505  Identities=20%  Similarity=0.204  Sum_probs=391.2

Q ss_pred             cHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 006197           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (657)
Q Consensus        43 ~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~  122 (657)
                      +|.++|++.++++|+++|+.+.    +     +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~   74 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVCG----D-----RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF   74 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            7899999999999999999874    3     689999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHH
Q 006197          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (657)
Q Consensus       123 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (657)
                      ++|++++++++.++.+++.++++.+++++++++......+.+.. ......+.++.+++.....      ......++.+
T Consensus        75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  147 (533)
T PRK07798         75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVL-PRLPKLRTLVVVEDGSGND------LLPGAVDYED  147 (533)
T ss_pred             hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHh-ccCCCccEEEEecCCcccc------cCCccccHHH
Confidence            99999999999999999999999999999999987666554432 2234455566655432110      0112345666


Q ss_pred             HHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhccc----ccCCC------CCCcEEEEe
Q 006197          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ----FEDKM------TVDDVYLSF  272 (657)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~----~~~~~------~~~d~~l~~  272 (657)
                      ++...... .. .....++.++++|||||||.||+|+++|+++..........+..    ....+      ..+++++..
T Consensus       148 ~~~~~~~~-~~-~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (533)
T PRK07798        148 ALAAGSPE-RD-FGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA  225 (533)
T ss_pred             HHhccCCc-CC-CCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence            66543211 11 11223455789999999999999999999987665443221100    00011      577899999


Q ss_pred             cChhHHHHHHHHHHHHhcCcEEEEec--C-ChHHHHHHHhhhcCeEEEechHHHHH-HHHHHHHHHHhhchHHHHHHHHH
Q 006197          273 LPLAHILDRVIEEYFFRRGASVGYYH--G-DLNALRDDLMELKPTLLAGVPRVFEK-IHEGIKKALEELRPLRRRIFDAL  348 (657)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~v~~~--~-~~~~~~~~i~~~~~t~l~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~  348 (657)
                      +|++|.+++...+.++..|+++++.+  . ++..+++.++++++|++.++|..+.. +...+. .               
T Consensus       226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~---------------  289 (533)
T PRK07798        226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A---------------  289 (533)
T ss_pred             cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c---------------
Confidence            99999999988888999999999988  3 89999999999999999999876643 322211 0               


Q ss_pred             HHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCC
Q 006197          349 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD  427 (657)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~  427 (657)
                                               .....++++|.+++||+++++++.+++.+.+ +.++++.||+||++.........
T Consensus       290 -------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  344 (533)
T PRK07798        290 -------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK  344 (533)
T ss_pred             -------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC
Confidence                                     0001124899999999999999999999887 78999999999997655543222


Q ss_pred             CccccCccC--cCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc----CCccccCceEEEc
Q 006197          428 EMCMVGTAG--PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQIL  501 (657)
Q Consensus       428 ~~~~~~~~G--~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~----~g~~~TGDl~~~~  501 (657)
                      ..   ...|  .+.++..+++++ +++...+.+....|+++ +++.++.||++++..+.+.|.    ++||+|||++++|
T Consensus       345 ~~---~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~  419 (533)
T PRK07798        345 GA---VHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVE  419 (533)
T ss_pred             CC---ccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEc
Confidence            22   2233  788899999998 66664443322226665 566899999999999988873    2599999999999


Q ss_pred             CCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHH
Q 006197          502 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL  578 (657)
Q Consensus       502 ~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~  578 (657)
                      ++|.+++.||.+|+|+. +|.+|++.+||+.+.++|.|.+|+|++..+.   +.+++++++.++..          .   
T Consensus       420 ~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------~---  485 (533)
T PRK07798        420 ADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGAR----------P---  485 (533)
T ss_pred             CCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCC----------C---
Confidence            99999999999999996 8999999999999999999999999986643   46888888765320          0   


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          579 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       579 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                         .        .++|.+.++ ..|+.|++|..++++++.      |+|++||++|++|+++.++
T Consensus       486 ---~--------~~~l~~~l~-~~l~~~~~P~~i~~~~~i------P~t~~GK~~~~~~~~~~~~  532 (533)
T PRK07798        486 ---D--------LAELRAHCR-SSLAGYKVPRAIWFVDEV------QRSPAGKADYRWAKEQAAE  532 (533)
T ss_pred             ---C--------HHHHHHHHh-hhcccCCCCeEEEEcccC------CCCCcchhhHHHHhhhhcc
Confidence               0        123444443 579999999999987654      9999999999999998875

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-56  Score=494.17  Aligned_cols=495  Identities=20%  Similarity=0.180  Sum_probs=384.8

Q ss_pred             HHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEE
Q 006197           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (657)
Q Consensus        49 ~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  128 (657)
                      ...++++|+++|+++.   ++.    +.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~   76 (511)
T PRK13391          4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY   76 (511)
T ss_pred             hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence            4678889999999874   222    579999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCc
Q 006197          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (657)
Q Consensus       129 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  208 (657)
                      +++++.++.+.+.++++.++++.++++........+... ........+.......         ......+.+..... 
T Consensus        77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-  145 (511)
T PRK13391         77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLK-QCPGVRHRLVLDGDGE---------LEGFVGYAEAVAGL-  145 (511)
T ss_pred             eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHh-cCCCceEEEEecCCCC---------CcccccHHHHhcCC-
Confidence            999999999999999999999999999876654432211 1122333333332110         00112233332211 


Q ss_pred             cCCccCCCCCCCceEEEEecCCCCCCCceeeec--hHhHHHhh---hhhhhhcccccCCCCCCcEEEEecChhHHHHHHH
Q 006197          209 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT--HETIATFV---SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (657)
Q Consensus       209 ~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t--h~~l~~~~---~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  283 (657)
                        + .......++.++++|||||||.||+|.++  |.++....   ......+     .+.+++++++.+|++|.+++..
T Consensus       146 --~-~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~  217 (511)
T PRK13391        146 --P-ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRA  217 (511)
T ss_pred             --C-CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHH
Confidence              1 11112345678999999999999999954  55543322   2222233     5778999999999999999887


Q ss_pred             HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCc
Q 006197          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREA  362 (657)
Q Consensus       284 ~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (657)
                      .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+......                            
T Consensus       218 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------------  269 (511)
T PRK13391        218 VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR----------------------------  269 (511)
T ss_pred             HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------
Confidence            7788999999998875 89999999999999999999999988764211100                            


Q ss_pred             chhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCe
Q 006197          363 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS  442 (657)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~  442 (657)
                          +.        ..++++|.+++||+++++++.+.+.+.+|..+++.||+||+++.............+++|.|+++ 
T Consensus       270 ----~~--------~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-  336 (511)
T PRK13391        270 ----DK--------YDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-  336 (511)
T ss_pred             ----cc--------CCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-
Confidence                00        01248999999999999999999999889999999999999976554333323344799999999 


Q ss_pred             eEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-c-CCccccCceEEEcCCCcEEEEecCcceeecCC
Q 006197          443 ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ  520 (657)
Q Consensus       443 ~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~-~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~  520 (657)
                      ++++++ +++.  +++.|+.|||+++|+ ++.||+++++.+...+ . ++||+|||+|+++++|.+++.||.+|++++ +
T Consensus       337 ~~~i~d-~~~~--~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~-~  411 (511)
T PRK13391        337 DLHILD-DDGA--ELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIIS-G  411 (511)
T ss_pred             eEEEEC-CCCC--CCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEe-C
Confidence            688888 5554  445678999999999 8889999999888877 3 499999999999999999999999999996 8


Q ss_pred             ceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHH
Q 006197          521 GEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  597 (657)
Q Consensus       521 G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  597 (657)
                      |.+|++.+||++|.+||.|.+|+|++.++.   +.+++++++..+..                 ..+.    +.++|.++
T Consensus       412 G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~----~~~~l~~~  470 (511)
T PRK13391        412 GVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVD-----------------PGPA----LAAELIAF  470 (511)
T ss_pred             CEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCC-----------------cccc----hHHHHHHH
Confidence            999999999999999999999999986544   36777887765320                 0111    22345555


Q ss_pred             HHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       598 ~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                      ++ +.+|.|++|..|.++++.      |+|++||++|+.|++.|..
T Consensus       471 ~~-~~l~~~~~P~~i~~~~~~------P~t~~gKv~r~~l~~~~~~  509 (511)
T PRK13391        471 CR-QRLSRQKCPRSIDFEDEL------PRLPTGKLYKRLLRDRYWG  509 (511)
T ss_pred             HH-hhcccCcCCcEEEEeecC------CCCCccceeHHHHHHHhhc
Confidence            54 689999999999987664      9999999999999998753

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.1e-57  Score=495.81  Aligned_cols=458  Identities=18%  Similarity=0.137  Sum_probs=333.0

Q ss_pred             eCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhh------hhhhccccccccCceEEEEecC
Q 006197          108 GANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV------KELLSPDCRSAQRLRVMVCFTS  181 (657)
Q Consensus       108 ~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~i~~~~~  181 (657)
                      ++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+++...      +.+... ... .....++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~   78 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKV-VEA-APAKAIVLPAA   78 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhh-hhc-ccceEEEEecc
Confidence            5899999999999999999999999999999999999999999999986421      111111 000 11122222211


Q ss_pred             CcHHHHHHHhhCCcceeeHHHHHhcCcc------CCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhh
Q 006197          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKV------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF  255 (657)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~  255 (657)
                      .....    ........++.+++.....      .........++++++|+|||||||.||||++||++++.++......
T Consensus        79 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         79 GEPVA----VPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             CcccC----CccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            10000    0000012245555432110      0111112356899999999999999999999999988766544443


Q ss_pred             cccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHH
Q 006197          256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  333 (657)
Q Consensus       256 ~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~  333 (657)
                      +     ++..+|++++.+|++|.+++...+.++..|+++++.+.  ++..+++.|+++++|++.++|+++..|.+.... 
T Consensus       155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~-  228 (499)
T PLN03051        155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAF-  228 (499)
T ss_pred             c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcc-
Confidence            4     67889999999999999887767778999999998864  778999999999999999999999987642100 


Q ss_pred             HHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc--CCceeee
Q 006197          334 LEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQG  411 (657)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~v~~~  411 (657)
                                                     .....++        ++||.+++||+++++++.+++.+.+  +.++++.
T Consensus       229 -------------------------------~~~~~~~--------~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~  269 (499)
T PLN03051        229 -------------------------------AMEGLDW--------SKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEY  269 (499)
T ss_pred             -------------------------------ccccCCc--------hhheEEEecCCCCCHHHHHHHHHhccccceeEee
Confidence                                           0000011        3899999999999999988877633  4789999


Q ss_pred             ccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCc--ccccCCCchhhhccccC
Q 006197          412 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL--FSGYYKNPDLTRESIID  489 (657)
Q Consensus       412 yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~--~~gy~~~~~~~~~~~~~  489 (657)
                      ||+||++..++..........+++|.|.++++++|+| +++..++.+.++.|||+++||++  +.||++++ .+. .+.+
T Consensus       270 YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~-~~~~  346 (499)
T PLN03051        270 CGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HDK-VYYK  346 (499)
T ss_pred             eccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-ccc-eeee
Confidence            9999987544332222222347999999999999999 77765555444689999999977  57999765 333 3434


Q ss_pred             C----------ccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhc-CcccceEEEEecCCC----CeEE
Q 006197          490 G----------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV-APIIEDIWVYGDSLK----SMLV  554 (657)
Q Consensus       490 g----------~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~-~~~V~~~~vv~~~~~----~~~~  554 (657)
                      |          ||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+ ||+|.+|+|++.+++    +.++
T Consensus       347 g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~  425 (499)
T PLN03051        347 GMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLV  425 (499)
T ss_pred             cCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEE
Confidence            4          6899999999999999999999999996 8999999999999986 999999999997653    3678


Q ss_pred             EEE---ecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccc
Q 006197          555 AVV---VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLK  631 (657)
Q Consensus       555 a~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GK  631 (657)
                      |+|   +++++..       ..        ..    +.+.+.+++.++ ++|+.+..|..|.++++      +|+|++||
T Consensus       426 a~v~~~v~~~~~~-------~~--------~~----~~l~~~~~~~l~-~~l~~~~~~~~i~~v~~------lP~t~~GK  479 (499)
T PLN03051        426 IFLVLGEEKKGFD-------QA--------RP----EALQKKFQEAIQ-TNLNPLFKVSRVKIVPE------LPRNASNK  479 (499)
T ss_pred             EEEEcceeccccc-------cc--------ch----HHHHHHHHHHHH-hhcCCccCCceEEEcCC------CCCCCCcc
Confidence            888   6654310       00        11    233444444443 56887666667888665      49999999


Q ss_pred             cchHHHHHHHHHHHH
Q 006197          632 KKRNKLLIYYQVEID  646 (657)
Q Consensus       632 v~r~~l~~~~~~~i~  646 (657)
                      ++|++|++.+.+.+.
T Consensus       480 i~r~~L~~~~~~~~~  494 (499)
T PLN03051        480 LLRRVLRDQLKKELS  494 (499)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999987766543

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6e-57  Score=503.03  Aligned_cols=504  Identities=21%  Similarity=0.251  Sum_probs=380.2

Q ss_pred             CCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 006197           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (657)
Q Consensus        32 ~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~  111 (657)
                      +.+|..-+...++.++|+..++.+|+..++ .     ...+.++.+||.||..++.++|.+|++.|+++||+|+++++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~   84 (579)
T PRK09192         11 SSLPRRYADFPTLVEALDYAALGEAGMNFY-D-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETD   84 (579)
T ss_pred             ccccccccchhhHHHHHHHhhccCCceEEE-e-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence            445666678889999999999988865543 2     2333457899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCEEEeccCCCC-------hhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcH
Q 006197          112 PQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA  184 (657)
Q Consensus       112 ~e~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  184 (657)
                      ++++++++||+++|++++|+++..+       .+++..+++.++++++|++....+.+......  .....         
T Consensus        85 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~--~~~~~---------  153 (579)
T PRK09192         85 GDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHG--NPLLH---------  153 (579)
T ss_pred             hhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcc--ccccc---------
Confidence            9999999999999999999986443       57899999999999999998766544332110  00001         


Q ss_pred             HHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhh-hcccccCCC
Q 006197          185 EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKM  263 (657)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~  263 (657)
                                  ..++..+.... ..........++++++++|||||||.||+|.++|++++..+..... .+     ++
T Consensus       154 ------------~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~  215 (579)
T PRK09192        154 ------------VLSHAWFKALP-EADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KV  215 (579)
T ss_pred             ------------eeehhhhcccC-CCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cC
Confidence                        11222222211 1111223346789999999999999999999999999988876654 44     78


Q ss_pred             CCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 006197          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (657)
Q Consensus       264 ~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~  337 (657)
                      .++|++++.+|++|.+++.. .+.++..|+++++...     ++..+++.+.++++++++.+|..+..+.......    
T Consensus       216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~----  291 (579)
T PRK09192        216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK----  291 (579)
T ss_pred             CCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc----
Confidence            89999999999999999875 4456888998877652     6788999999999998777655555443211000    


Q ss_pred             chHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC------Cceeee
Q 006197          338 RPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQG  411 (657)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~  411 (657)
                                                 .....++        +++|.+++||+++++.+.+.+.+.+.      ..+++.
T Consensus       292 ---------------------------~~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~  336 (579)
T PRK09192        292 ---------------------------DLAELDL--------SCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPS  336 (579)
T ss_pred             ---------------------------cccccch--------hhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccc
Confidence                                       0011112        38999999999999999999888763      348999


Q ss_pred             ccCCCCCCccccccCCCc---------------------------cccCccCcCccCeeEEEeecCCCCCCCCCCCCCce
Q 006197          412 YGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  464 (657)
Q Consensus       412 yG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GE  464 (657)
                      ||+||+++.++.......                           ....++|.++++++++|++ +++.  .++.++.||
T Consensus       337 yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~--~~~~g~~Ge  413 (579)
T PRK09192        337 YGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGM--PLPERVVGH  413 (579)
T ss_pred             cccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCC--CCCCCCEEE
Confidence            999999876654432110                           1125789999999999998 6554  445668999


Q ss_pred             EEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccc--e
Q 006197          465 VCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE--D  541 (657)
Q Consensus       465 l~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~--~  541 (657)
                      |+++|+.++.||+++ ..+.+.+ .+|||+|||+|++ .+|+++++||.+|+|++ +|++|+|.+||+.|.+||+|.  +
T Consensus       414 l~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~  490 (579)
T PRK09192        414 ICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELRSGD  490 (579)
T ss_pred             EEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCccCCc
Confidence            999999999999999 5555555 7999999999999 99999999999999997 899999999999999999998  8


Q ss_pred             EEEEecCCC--CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCC
Q 006197          542 IWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPF  619 (657)
Q Consensus       542 ~~vv~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f  619 (657)
                      |+|++..++  +.++++++.....                    ....+.+.+.+++.+.    +.+++|..+.++..  
T Consensus       491 ~~v~~~~~~~~~~~~~~v~~~~~~--------------------~~~~~~l~~~~~~~l~----~~~~~~~~i~~~~~--  544 (579)
T PRK09192        491 AAAFSIAQENGEKIVLLVQCRISD--------------------EERRGQLIHALAALVR----SEFGVEAAVELVPP--  544 (579)
T ss_pred             EEEEEeccCCCeeEEEEEEecCCC--------------------hHHHHHHHHHHHHHHH----HHhCCCceEEEeCC--
Confidence            999886544  3677777765432                    1112233333333322    23566777777641  


Q ss_pred             CCCCCccccccccchHHHHHHHHH
Q 006197          620 DMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       620 ~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                        +.+|+|.+||++|++|+++|..
T Consensus       545 --~~lP~t~~GKv~R~~l~~~~~~  566 (579)
T PRK09192        545 --HSLPRTSSGKLSRAKAKKRYLS  566 (579)
T ss_pred             --CCcCCCCCcchhHHHHHHHHHc
Confidence              3469999999999999999876

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3e-56  Score=489.86  Aligned_cols=482  Identities=21%  Similarity=0.235  Sum_probs=379.7

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEE
Q 006197           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (657)
Q Consensus        75 ~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~  154 (657)
                      +.+||.||.+.++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++++++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhcccccccc-CceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCC
Q 006197          155 QDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSG  233 (657)
Q Consensus       155 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG  233 (657)
                      ++.....+.+... ... ....++......           .....+.+......    .......++.++++|||||||
T Consensus        90 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG  153 (502)
T PRK08276         90 SAALADTAAELAA-ELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTG  153 (502)
T ss_pred             ccchhhHHHHHhh-hccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCC
Confidence            9876655432211 112 334444432111           11223444433211    111234567899999999999


Q ss_pred             CCceeeechHhHHHhhh--hhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhh
Q 006197          234 DPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLME  310 (657)
Q Consensus       234 ~pK~v~~th~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~  310 (657)
                      .||+|+++|.++.....  ....... .......++++++.+|++|.+++...+.++..|+++++.+. ++..+++.+++
T Consensus       154 ~PK~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  232 (502)
T PRK08276        154 RPKGIKRPLPGLDPDEAPGMMLALLG-FGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIER  232 (502)
T ss_pred             CCceEEEccCCcchhhhhHHhhhhhh-hcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHH
Confidence            99999999887654332  1101110 11123578899999999999998887788999999988775 89999999999


Q ss_pred             hcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCC
Q 006197          311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA  390 (657)
Q Consensus       311 ~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~  390 (657)
                      +++|++.++|+++..+.+.....                                .+.+++        +++|.++++|+
T Consensus       233 ~~~t~~~~~P~~~~~l~~~~~~~--------------------------------~~~~~~--------~~lr~i~~~g~  272 (502)
T PRK08276        233 YRVTHSQLVPTMFVRMLKLPEEV--------------------------------RARYDV--------SSLRVAIHAAA  272 (502)
T ss_pred             hCCeEEEehHHHHHHHHhCcccc--------------------------------CCCCCc--------ccceEEEecCC
Confidence            99999999999998876421100                                000111        48999999999


Q ss_pred             CCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccC
Q 006197          391 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK  470 (657)
Q Consensus       391 ~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~  470 (657)
                      ++++++.+++.+.++.++++.||+||++.+++..........+++|.|+ +.++++++ +++.  +++.|+.|||+++|+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~--~~~~g~~Gel~v~~~  348 (502)
T PRK08276        273 PCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGN--ELPPGEIGTVYFEMD  348 (502)
T ss_pred             CCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCC--CCcCCCceEEEEECC
Confidence            9999999999998899999999999999866655443334447899999 88999998 6554  455678999999999


Q ss_pred             CcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCC
Q 006197          471 TLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL  549 (657)
Q Consensus       471 ~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~  549 (657)
                      .++.||+++++.+...+ .+|||+|||+++++++|.+++.||.+|++++ +|.+|++.+||..|.++|+|.+|+|++..+
T Consensus       349 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~  427 (502)
T PRK08276        349 GYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGVPD  427 (502)
T ss_pred             CccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeCCC
Confidence            99999999999999888 4599999999999999999999999999996 899999999999999999999999998765


Q ss_pred             C---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCcc
Q 006197          550 K---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLV  626 (657)
Q Consensus       550 ~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~  626 (657)
                      +   +.++++|++.++..                 ...++.    +.+.+.++ +.|+.+++|..++++++.      |+
T Consensus       428 ~~~~~~~~~~v~~~~~~~-----------------~~~~~~----~~i~~~~~-~~l~~~~~p~~i~~~~~l------P~  479 (502)
T PRK08276        428 EEMGERVKAVVQPADGAD-----------------AGDALA----AELIAWLR-GRLAHYKCPRSIDFEDEL------PR  479 (502)
T ss_pred             cccCceEEEEEEECCCCC-----------------CChhhH----HHHHHHHH-hhccCCCCCcEEEEecCC------CC
Confidence            4   47899999876420                 112222    23444443 689999999999997664      89


Q ss_pred             ccccccchHHHHHHHHHHHH
Q 006197          627 TATLKKKRNKLLIYYQVEID  646 (657)
Q Consensus       627 t~~GKv~r~~l~~~~~~~i~  646 (657)
                      |++||++|++|++.|...-+
T Consensus       480 t~~GKi~r~~L~~~~~~~~~  499 (502)
T PRK08276        480 TPTGKLYKRRLRDRYWEGRQ  499 (502)
T ss_pred             CcccchhHHHHHHHHHhhhh
Confidence            99999999999999876544

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.8e-56  Score=488.98  Aligned_cols=481  Identities=21%  Similarity=0.223  Sum_probs=376.0

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEE
Q 006197           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (657)
Q Consensus        75 ~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~  154 (657)
                      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++..+++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhccccccccCceEEEEecCCcHHHHH-----HHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecC
Q 006197          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKE-----MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS  229 (657)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TS  229 (657)
                      +......+.+....   .. .++...........     ...........++++.....    .......+++++++|||
T Consensus        90 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TS  161 (509)
T PRK12406         90 HADLLHGLASALPA---GV-TVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTS  161 (509)
T ss_pred             ccchhhhhhhhhhc---cc-ceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECC
Confidence            88766654332211   11 11111110000000     00000112334555443221    11233568999999999


Q ss_pred             CCCCCCceeeechHhHHHh---hhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC-ChHHHH
Q 006197          230 GTSGDPKGVVLTHETIATF---VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALR  305 (657)
Q Consensus       230 GTTG~pK~v~~th~~l~~~---~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~  305 (657)
                      ||||.||+|.++|.+....   .......+     ++..++++++.+|++|..+....+.++..|+++++.+. ++..++
T Consensus       162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  236 (509)
T PRK12406        162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELL  236 (509)
T ss_pred             CCCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHH
Confidence            9999999999876654333   22223333     67889999999999998887777777888999888765 899999


Q ss_pred             HHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEE
Q 006197          306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV  385 (657)
Q Consensus       306 ~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i  385 (657)
                      +.++++++|++.++|+++..|.+......                                +.        ..++++|.+
T Consensus       237 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------------~~--------~~~~~l~~v  276 (509)
T PRK12406        237 QLIERHRITHMHMVPTMFIRLLKLPEEVR--------------------------------AK--------YDVSSLRHV  276 (509)
T ss_pred             HHHHHcCCeEEEccHHHHHHHHhCchhhc--------------------------------cc--------CCCCceeEE
Confidence            99999999999999999988764211100                                00        011489999


Q ss_pred             EEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceE
Q 006197          386 ISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV  465 (657)
Q Consensus       386 ~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl  465 (657)
                      ++||+++++++.+++.+.++..+++.||+||++.+++.+.......++++|.|++++++++++ +++.  +++.|+.|||
T Consensus       277 ~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel  353 (509)
T PRK12406        277 IHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGR--PLPQGEIGEI  353 (509)
T ss_pred             EEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCC--CCCCCCceEE
Confidence            999999999999999998899999999999999876655444344458999999999999999 6554  4556789999


Q ss_pred             EEccCCccc-ccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEE
Q 006197          466 CVRGKTLFS-GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV  544 (657)
Q Consensus       466 ~v~g~~~~~-gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~v  544 (657)
                      +++|+.++. +|++++..+...+.+|||+|||+++++++|.+++.||.+|+|++ +|.+|++.+||+.|.++|+|.+|+|
T Consensus       354 ~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~~~v  432 (509)
T PRK12406        354 YSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHDCAV  432 (509)
T ss_pred             EEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeEEEE
Confidence            999998875 89999988888788999999999999999999999999999996 8999999999999999999999999


Q ss_pred             EecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCC
Q 006197          545 YGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDM  621 (657)
Q Consensus       545 v~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~  621 (657)
                      ++.++.   +.+++++++.+...          .      .        .+++++.++ +.+++|++|..+.++++.   
T Consensus       433 ~~~~~~~~~~~~~~~v~~~~~~~----------~------~--------~~~l~~~l~-~~l~~~~~P~~i~~~~~i---  484 (509)
T PRK12406        433 FGIPDAEFGEALMAVVEPQPGAT----------L------D--------EADIRAQLK-ARLAGYKVPKHIEIMAEL---  484 (509)
T ss_pred             EeeeccccCceeEEEEEECCCCC----------C------C--------HHHHHHHHH-HhcccCCCCcEEEEeccC---
Confidence            986653   46788888765320          0      0        123334443 679999999999987664   


Q ss_pred             CCCccccccccchHHHHHHHHH
Q 006197          622 ERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       622 ~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                         |+|++||++|++|++.|.+
T Consensus       485 ---P~t~~GK~~r~~L~~~~~~  503 (509)
T PRK12406        485 ---PREDSGKIFKRRLRDPYWA  503 (509)
T ss_pred             ---CCCCccchhHHHHHHHHHh
Confidence               9999999999999887754

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=6.2e-57  Score=590.47  Aligned_cols=482  Identities=20%  Similarity=0.213  Sum_probs=397.0

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      +...+++++|+++++++|+++|+++.   +      +++||+||.++++++|++|++.|+++|++|++++++++++++++
T Consensus      1128 ~~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~ 1198 (4334)
T PRK05691       1128 PAQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGL 1198 (4334)
T ss_pred             CccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34568999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      |||+++|++++|++|.++.+++.++++.++++++|++......+...     ... ..+..+...               
T Consensus      1199 lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~~~--------------- 1257 (4334)
T PRK05691       1199 LAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EGV-SAIALDSLH--------------- 1257 (4334)
T ss_pred             HHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cCc-eEEeecccc---------------
Confidence            99999999999999999999999999999999999998765433111     011 111111110               


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                       ..     ......+.....++++++++|||||||.||||+++|+++.+.+.+....+     ++.++|++++..|++|.
T Consensus      1258 -~~-----~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 1326 (4334)
T PRK05691       1258 -LD-----SWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFD 1326 (4334)
T ss_pred             -cc-----ccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHH
Confidence             00     00011112234678999999999999999999999999999988877666     78999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhh
Q 006197          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMN  354 (657)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (657)
                      .+...++.+|..|+++++.+.    ++..+.+.++++++|++.++|+++..+.+....                      
T Consensus      1327 ~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~---------------------- 1384 (4334)
T PRK05691       1327 VSVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA---------------------- 1384 (4334)
T ss_pred             HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc----------------------
Confidence            888888899999999999753    788999999999999999999999887642100                      


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccC-CCcccc
Q 006197          355 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCMV  432 (657)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~-~~~~~~  432 (657)
                                            ...++||.+++||+++++++.++|.+.+ +..++|.||+||+++.++.... ......
T Consensus      1385 ----------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 1442 (4334)
T PRK05691       1385 ----------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGER 1442 (4334)
T ss_pred             ----------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCC
Confidence                                  0114899999999999999999998876 7889999999999877664332 122234


Q ss_pred             CccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc--------CCccccCceEEEcCCC
Q 006197          433 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQILPNG  504 (657)
Q Consensus       433 ~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDl~~~~~~G  504 (657)
                      .++|+|+++++++|+| +++.  +++.|+.|||+|+|+++++||+++++.|.+.|.        .+||+|||+|++++||
T Consensus      1443 ~~iG~p~~~~~~~i~d-~~~~--~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG 1519 (4334)
T PRK05691       1443 SPIGRPLGNVLCRVLD-AELN--LLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADG 1519 (4334)
T ss_pred             CcccceeCCCEEEEEC-CCCC--CCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCC
Confidence            7899999999999998 6554  455678999999999999999999999999883        2499999999999999


Q ss_pred             cEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCC--CCeEEEEEecChhhHHHHHHHCCCCccHHHHhc
Q 006197          505 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  582 (657)
Q Consensus       505 ~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  582 (657)
                      .++++||.|++||+ +|++|+|.+||++|.+||+|.+|+|+....  .+.++++++...+..                 .
T Consensus      1520 ~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~-----------------~ 1581 (4334)
T PRK05691       1520 ALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQE-----------------A 1581 (4334)
T ss_pred             CEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCC-----------------C
Confidence            99999999999998 799999999999999999999999997543  357888888765320                 0


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006197          583 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  640 (657)
Q Consensus       583 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~  640 (657)
                      .       .++|+++++ ..||.|++|..+++++..      |+|++|||+|++|.+.
T Consensus      1582 ~-------~~~l~~~l~-~~Lp~y~vP~~~~~~~~l------P~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1582 E-------AERLKAALA-AELPEYMVPAQLIRLDQM------PLGPSGKLDRRALPEP 1625 (4334)
T ss_pred             C-------HHHHHHHHH-HhCccccCCcEEEEcccc------CCCCCCCcChhhcCcc
Confidence            0       123444444 689999999999987654      9999999999999653

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.1e-56  Score=494.60  Aligned_cols=508  Identities=17%  Similarity=0.190  Sum_probs=368.0

Q ss_pred             cHHHHHHHHHHcCCCCCceeeecccCCC---CCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        43 ~i~~~l~~~a~~~p~~~a~~~~~~~d~~---~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ++.++|++++..+|+++|+++.   +..   .+..+++||.||..+++++|++|.+.| .+||+|+++++|++++++++|
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l   77 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL   77 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence            6889999999999999999875   311   122478999999999999999999999 689999999999999999999


Q ss_pred             HHHhcCCEEEeccC---CCChhHHHHHHhccCceEEEEcchhhhhhhcccccc-ccCceEEEEecCCcHHHHHHHhhCCc
Q 006197          120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTGI  195 (657)
Q Consensus       120 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (657)
                      ||+++|++++|+++   ..+.+++.++|+.+++++++++.+....+.+..... ......++..+..             
T Consensus        78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  144 (578)
T PRK05850         78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-------------  144 (578)
T ss_pred             HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence            99999999999997   457889999999999999999987666543211100 0011112211110             


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhc-ccccCCCCCCcEEEEecC
Q 006197          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL-DQFEDKMTVDDVYLSFLP  274 (657)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~-~~~~~~~~~~d~~l~~~p  274 (657)
                            ++..   ..........++++++++|||||||.||+|.++|+++++++......+ .........++++++.+|
T Consensus       145 ------~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  215 (578)
T PRK05850        145 ------DLDS---PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLP  215 (578)
T ss_pred             ------cccc---CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECC
Confidence                  0000   000111234578999999999999999999999999988776654321 110011456889999999


Q ss_pred             hhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHH-HHHHHHHHHHHHhhchHHHHHHHH
Q 006197          275 LAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVF-EKIHEGIKKALEELRPLRRRIFDA  347 (657)
Q Consensus       275 l~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~-~~l~~~~~~~~~~~~~~~~~~~~~  347 (657)
                      ++|.+++.. .+.+++.|+++++.+.     ++..+++.+.+++++++ .+|.++ ..+.......              
T Consensus       216 l~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~--------------  280 (578)
T PRK05850        216 FYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD--------------  280 (578)
T ss_pred             CCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh--------------
Confidence            999999875 6778999999998863     68899999999999865 555544 3332211000              


Q ss_pred             HHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC------CceeeeccCCCCCCcc
Q 006197          348 LKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPT  421 (657)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE~~~~~  421 (657)
                                       .....++        +++|.+++||+++++.+.++|.+.++      ..+++.||+||++..+
T Consensus       281 -----------------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  335 (578)
T PRK05850        281 -----------------DMAGLDL--------GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYV  335 (578)
T ss_pred             -----------------hhcCcch--------hhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhhe
Confidence                             0000011        38999999999999999999888762      3689999999987654


Q ss_pred             ccccCCCc------------------------cccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccC
Q 006197          422 TVCFPDEM------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  477 (657)
Q Consensus       422 ~~~~~~~~------------------------~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~  477 (657)
                      ........                        ....++|.|. +.++++++ +++. .+++.|+.|||+++|++++.||+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~~~-~~~~~g~~Gel~v~g~~~~~gY~  412 (578)
T PRK05850        336 ATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PDTC-IECPAGTVGEIWVHGDNVAAGYW  412 (578)
T ss_pred             eccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CCCC-cCCCCCCEEEEEEecCccccccc
Confidence            43221100                        0012334443 57899998 4433 45667889999999999999999


Q ss_pred             CCchhhhcccc------------CCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEE
Q 006197          478 KNPDLTRESII------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY  545 (657)
Q Consensus       478 ~~~~~~~~~~~------------~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv  545 (657)
                      ++++.+.+.|.            +|||+|||+|+++ +|++++.||.+|+|++ +|++|+|.+||++|.+||.+ +|+|+
T Consensus       413 ~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~-~~~v~  489 (578)
T PRK05850        413 QKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGG-RVAAI  489 (578)
T ss_pred             CChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCC-cEEEE
Confidence            99999998883            5799999999998 9999999999999997 89999999999999999985 47788


Q ss_pred             ecCCC--CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCC
Q 006197          546 GDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMER  623 (657)
Q Consensus       546 ~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~  623 (657)
                      +.++.  +.++++|++++...        ...      ........+.+.+.+.+..   +....|..+.+++    .+.
T Consensus       490 ~v~~~~~~~~~a~v~~~~~~~--------~~~------~~~~~~~~l~~~v~~~l~~---~~~~~~~~~~~~~----~~~  548 (578)
T PRK05850        490 SVPDDGTEKLVAIIELKKRGD--------SDE------EAMDRLRTVKREVTSAISK---SHGLSVADLVLVA----PGS  548 (578)
T ss_pred             EecCCCceEEEEEEEeccccC--------cch------hhhhhHHHHHHHHHHHHHH---HhCCCceEEEEeC----CCC
Confidence            76643  57889988876421        000      0001234445555443331   1123466666664    234


Q ss_pred             CccccccccchHHHHHHHHH
Q 006197          624 DLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       624 ~P~t~~GKv~r~~l~~~~~~  643 (657)
                      +|+|++||++|++++++|.+
T Consensus       549 iP~t~~GKi~R~~l~~~~~~  568 (578)
T PRK05850        549 IPITTSGKIRRAACVEQYRQ  568 (578)
T ss_pred             cCCCCCchHHHHHHHHHHHc
Confidence            69999999999999999866

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.7e-56  Score=516.00  Aligned_cols=491  Identities=15%  Similarity=0.118  Sum_probs=363.1

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      ....++.++|+++++++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~----~-----~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~  514 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFD----G-----RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI  514 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            44568999999999999999999874    3     57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      +||+++|++++|++|.   +++.++++.++++++|++......+...       ...+++++........  ........
T Consensus       515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~~--~~~~~~~~  582 (994)
T PRK07868        515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDLD--LPDDADVI  582 (994)
T ss_pred             HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCcccccc--CCcchhhh
Confidence            9999999999999985   6799999999999999988766554221       1344444321100000  00000001


Q ss_pred             eHHHHHhcCcc--CCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          199 SWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       199 ~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                      .+.++......  ......+..++++++|+|| ||||.||++.++|.++..........+     .+..+|++++.+|++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~  656 (994)
T PRK07868        583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH  656 (994)
T ss_pred             hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence            11111000000  0001112236899999999 578888888888877655544433333     688999999999999


Q ss_pred             HHHHHHHHHHH-HhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhh
Q 006197          277 HILDRVIEEYF-FRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMN  354 (657)
Q Consensus       277 ~~~g~~~~~~~-l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (657)
                      |.+++...+.+ +..|+++++.+. ++..+++.|+++++|+++++|+++..|.+....                      
T Consensus       657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~----------------------  714 (994)
T PRK07868        657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF----------------------  714 (994)
T ss_pred             HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC----------------------
Confidence            99998865554 555555656554 899999999999999999999999887642100                      


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC-CceeeeccCCCCCCccccccCCCccccC
Q 006197          355 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVG  433 (657)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~~~~  433 (657)
                                  .        ....+++|.++  |+.+++++.+.+.+.++ .++++.||+||++..... ..  ....+
T Consensus       715 ------------~--------~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~-~~--~~~~~  769 (994)
T PRK07868        715 ------------V--------LHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN-VS--GAKIG  769 (994)
T ss_pred             ------------c--------cCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeecccccccccc-cC--CCCCc
Confidence                        0        00113789776  34599999999999885 789999999998765432 21  22348


Q ss_pred             ccCcCccCe-eEEEeec----------CCCCCCCCCCCCCceEEEccCCcccccCCCchhh--hccc--cCCccccCceE
Q 006197          434 TAGPVSVYS-ELRLEEV----------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT--RESI--IDGWFHTGDIG  498 (657)
Q Consensus       434 ~~G~~~~~~-~~~iv~~----------~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~--~~~~--~~g~~~TGDl~  498 (657)
                      ++|+|++++ +++|+..          +++....++.|+.|||+++++..    + ++..+  ...|  .+|||+|||+|
T Consensus       770 svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg  844 (994)
T PRK07868        770 SKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLF  844 (994)
T ss_pred             ccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceE
Confidence            999999998 7776521          22211234567899999999853    3 33322  2234  37999999999


Q ss_pred             EEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC--CeEEEEEecChhhHHHHHHHCCCCcc
Q 006197          499 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGS  576 (657)
Q Consensus       499 ~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~  576 (657)
                      ++|+||+|+++||.||+||+ +|.+|+|.+||++|.+||+|.+|+|++.+++  +.++|+|+++++..        .   
T Consensus       845 ~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~--------~---  912 (994)
T PRK07868        845 RRDDDGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAA--------I---  912 (994)
T ss_pred             EEcCCCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCc--------C---
Confidence            99999999999999999997 6889999999999999999999999997654  47889998876420        0   


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006197          577 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  641 (657)
Q Consensus       577 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~  641 (657)
                           +        .++|+++++  .+|.|++|+.|+++++.      |+|++||++|++|+++-
T Consensus       913 -----~--------~~~L~~~l~--~l~~y~vP~~i~~v~~l------P~T~sGKi~r~~L~~~~  956 (994)
T PRK07868        913 -----T--------AADLTEALA--SLPVGLGPDIVHVVPEI------PLSATYRPTVSALRAAG  956 (994)
T ss_pred             -----C--------HHHHHHHHH--hCCCCcCCeEEEEeCCC------CCCccccEehHHHHhcC
Confidence                 1        134555554  38999999999997665      99999999999998764

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.5e-55  Score=475.77  Aligned_cols=433  Identities=25%  Similarity=0.309  Sum_probs=354.2

Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcch
Q 006197           78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK  157 (657)
Q Consensus        78 Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~  157 (657)
                      ||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+.+..+++.++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCce
Q 006197          158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKG  237 (657)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~  237 (657)
                      .....          .    ..                  ..+..+................+++++++|||||||.||+
T Consensus        81 ~~~~~----------~----~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        81 LEEKD----------F----QA------------------DSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             ccccc----------e----ee------------------cchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            32110          0    00                  0111111111111111223457889999999999999999


Q ss_pred             eeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecCChHHHHHHHhhhcCeEEE
Q 006197          238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA  317 (657)
Q Consensus       238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~  317 (657)
                      |.++|+++...+......+     ++.++|++++.+|++|.+++...+.++..|+++++.+. ...+++.++++++|++.
T Consensus       129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-~~~~~~~l~~~~~t~~~  202 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK-FNQLLEMIANERVTHIS  202 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecch-HHHHHHHHHHhCCeEEE
Confidence            9999999999888877666     78899999999999999998878888999999988864 34999999999999999


Q ss_pred             echHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHH
Q 006197          318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE  397 (657)
Q Consensus       318 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~  397 (657)
                      ++|+++..+.+....                                              .+++|.++++|+++++++.
T Consensus       203 ~~P~~l~~l~~~~~~----------------------------------------------~~~l~~~~~~G~~~~~~~~  236 (436)
T TIGR01923       203 LVPTQLNRLLDEGGH----------------------------------------------NENLRKILLGGSAIPAPLI  236 (436)
T ss_pred             eHHHHHHHHHhCcCC----------------------------------------------CCceEEEEECCCCCCHHHH
Confidence            999999887642100                                              0389999999999999999


Q ss_pred             HHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccC
Q 006197          398 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  477 (657)
Q Consensus       398 ~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~  477 (657)
                      +.+.+ ++.++++.||+||++..++...........++|.|++++++++.. ++.       ++.|||+++|+.++.||+
T Consensus       237 ~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~-------~~~Gel~v~~~~~~~gy~  307 (436)
T TIGR01923       237 EEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNK-------EGHGEIMVKGANLMKGYL  307 (436)
T ss_pred             HHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCC-------CCceEEEEECCccchhhC
Confidence            98876 599999999999998866654443322223599999999999954 222       157999999999999999


Q ss_pred             CCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEE
Q 006197          478 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLV  554 (657)
Q Consensus       478 ~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~  554 (657)
                      +++..+...+.+|||+|||+++++.+|.+++.||.+|+|++ +|.+|++.+||++|.++|.|.+++|++.++.   ..+.
T Consensus       308 ~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~  386 (436)
T TIGR01923       308 YQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPV  386 (436)
T ss_pred             CChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeE
Confidence            98888877778899999999999999999999999999997 8999999999999999999999999987654   3677


Q ss_pred             EEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccch
Q 006197          555 AVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKR  634 (657)
Q Consensus       555 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r  634 (657)
                      +++++..+.                  +..        .+.+++ +..|+.|++|..+.++++      +|+|++||++|
T Consensus       387 ~~v~~~~~~------------------~~~--------~l~~~l-~~~l~~~~~p~~i~~~~~------iP~t~~GK~~r  433 (436)
T TIGR01923       387 AYIVSESDI------------------SQA--------KLIAYL-TEKLAKYKVPIAFEKLDE------LPYNASGKILR  433 (436)
T ss_pred             EEEEECCCC------------------CHH--------HHHHHH-HHhhhCCCCCeEEEEecC------CCCCCCCceec
Confidence            787776532                  111        222333 357889999999998765      49999999999


Q ss_pred             HHH
Q 006197          635 NKL  637 (657)
Q Consensus       635 ~~l  637 (657)
                      ++|
T Consensus       434 ~~L  436 (436)
T TIGR01923       434 NQL  436 (436)
T ss_pred             ccC
Confidence            874

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.7e-54  Score=479.03  Aligned_cols=494  Identities=17%  Similarity=0.173  Sum_probs=370.9

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      +.++.+.|..++...|+.+++...   ++.    +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la   73 (545)
T PRK07768          1 MSRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQG   73 (545)
T ss_pred             CchHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence            357899999999999999988665   432    7899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHH-------HHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhC
Q 006197          121 CNALSLICVPLYDTLGPGAV-------NFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l-------~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (657)
                      |+++|++++++++..+.+++       ..+++.++++.+++++........ ...                        .
T Consensus        74 ~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~------------------------~  128 (545)
T PRK07768         74 LWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPV-LEE------------------------K  128 (545)
T ss_pred             HHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhh-hcc------------------------c
Confidence            99999999999988776544       456777899999998765432211 000                        0


Q ss_pred             CcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCC-cEEEEe
Q 006197          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD-DVYLSF  272 (657)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~-d~~l~~  272 (657)
                      ......++++.....   .......++++++++|||||||.||+|+++|+++...+..+...+     ++..+ |++++.
T Consensus       129 ~~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~  200 (545)
T PRK07768        129 GIRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSW  200 (545)
T ss_pred             CCceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEe
Confidence            111233444443221   122344679999999999999999999999999998887766555     66665 899999


Q ss_pred             cChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006197          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (657)
Q Consensus       273 ~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (657)
                      +|++|.+++.. ...++..|++++++..     ++..+...+++++++++..+|..+..+.+.+.+....          
T Consensus       201 ~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------  270 (545)
T PRK07768        201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP----------  270 (545)
T ss_pred             CCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc----------
Confidence            99999999875 4557999999888753     6778899999999999988887777665433111000          


Q ss_pred             HHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHh---cCC---ceeeeccCCCCCCc
Q 006197          347 ALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTETCGP  420 (657)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~~~---~v~~~yG~tE~~~~  420 (657)
                                          ...+        ++++|.++++|+++++.+.+.+.+.   +|.   .+++.||+||++..
T Consensus       271 --------------------~~~~--------~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~  322 (545)
T PRK07768        271 --------------------GAFD--------LSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLA  322 (545)
T ss_pred             --------------------cCCC--------chheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceE
Confidence                                0001        1389999999999999999988774   454   49999999999876


Q ss_pred             cccccCCC-------------------------ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccc
Q 006197          421 TTVCFPDE-------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG  475 (657)
Q Consensus       421 ~~~~~~~~-------------------------~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~g  475 (657)
                      ++....+.                         ....+++|.|++++++++++ +++.  +++.++.|||+++|+.++.|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~--~~~~g~~Gel~v~~~~~~~g  399 (545)
T PRK07768        323 VSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQ--VLPPRGVGVIELRGESVTPG  399 (545)
T ss_pred             EEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCC--CCCCCCEEEEEEccCccccc
Confidence            54433221                         11236899999999999998 6664  44566899999999999999


Q ss_pred             cCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecC--CC---
Q 006197          476 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LK---  550 (657)
Q Consensus       476 y~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~--~~---  550 (657)
                      |++.+......+.+|||+|||+++++++|.++++||.+|+|++ +|.+|++.+||+.|.+||+|.+++|++..  +.   
T Consensus       400 y~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~  478 (545)
T PRK07768        400 YLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSR  478 (545)
T ss_pred             ccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEEEecCCCCc
Confidence            9987655554457899999999999999999999999999997 79999999999999999999998777532  22   


Q ss_pred             CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCcccccc
Q 006197          551 SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATL  630 (657)
Q Consensus       551 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~G  630 (657)
                      +..+++++.....                   .......+.+.+++.+. ..+  ..+|..+.+++.    +.+|+|++|
T Consensus       479 ~~~~~~v~~~~~~-------------------~~~~~~~l~~~~~~~l~-~~~--~~~p~~v~~v~~----~~lP~t~~G  532 (545)
T PRK07768        479 EGFAVAVESNAFE-------------------DPAEVRRIRHQVAHEVV-AEV--GVRPRNVVVLGP----GSIPKTPSG  532 (545)
T ss_pred             eEEEEEEEecccc-------------------cHHHHHHHHHHHHHHHH-HHh--CCCccEEEEeCC----CcCCCCCch
Confidence            2344444333221                   11111223333333322 111  146777887752    345999999


Q ss_pred             ccchHHHHHHHH
Q 006197          631 KKKRNKLLIYYQ  642 (657)
Q Consensus       631 Kv~r~~l~~~~~  642 (657)
                      |++|+.++++|.
T Consensus       533 Ki~r~~l~~~~~  544 (545)
T PRK07768        533 KLRRANAAELVT  544 (545)
T ss_pred             hHHHHHHHHhcC
Confidence            999999999875

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-52  Score=446.70  Aligned_cols=396  Identities=16%  Similarity=0.115  Sum_probs=330.1

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEE
Q 006197           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (657)
Q Consensus        75 ~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~  154 (657)
                      +++||.||.++++++|++|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+.+..+++.++++.+++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            58999999999999999985 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCC
Q 006197          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (657)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~  234 (657)
                      ++....            .      .                  .              .....++++++++|||||||.
T Consensus        86 ~~~~~~------------~------~------------------~--------------~~~~~~~~~~~i~~TSGtTG~  115 (414)
T PRK08308         86 GESDFT------------K------L------------------E--------------AVNYLAEEPSLLQYSSGTTGE  115 (414)
T ss_pred             cCcccc------------c------c------------------c--------------CCCCCCCCceEEEECCCCCCC
Confidence            753100            0      0                  0              011346789999999999999


Q ss_pred             CceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhc
Q 006197          235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELK  312 (657)
Q Consensus       235 pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~  312 (657)
                      ||+|.+||+++.+.+..+...+     ....+|+++..+|++|.+++.. .+.++..|+++++.+. ++..+++.+++++
T Consensus       116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~  190 (414)
T PRK08308        116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP  190 (414)
T ss_pred             CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence            9999999999998888776666     6788899999999999999864 6678999999988775 8999999999999


Q ss_pred             CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCC
Q 006197          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL  392 (657)
Q Consensus       313 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l  392 (657)
                      +|+++++|.++..+.+....                                              ..+++.++++|+++
T Consensus       191 ~t~~~~~P~~~~~l~~~~~~----------------------------------------------~~~l~~~~~~G~~l  224 (414)
T PRK08308        191 QHILYAVPLMLHILGRLLPG----------------------------------------------TFQFHAVMTSGTPL  224 (414)
T ss_pred             CeEEEcCHHHHHHHHhcCCc----------------------------------------------cccccEEEEccCCC
Confidence            99999999999887642110                                              02678899999999


Q ss_pred             CHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCc
Q 006197          393 STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL  472 (657)
Q Consensus       393 ~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~  472 (657)
                      ++++.+.+++. +.++++.||+||++......   .....+++|+|++++++++.+ +.        ++.|||++++.  
T Consensus       225 ~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~---~~~~~~~~G~p~~~~~~~~~~-~~--------~~~gel~v~~~--  289 (414)
T PRK08308        225 PEAWFYKLRER-TTYMMQQYGCSEAGCVSICP---DMKSHLDLGNPLPHVSVSAGS-DE--------NAPEEIVVKMG--  289 (414)
T ss_pred             CHHHHHHHHHh-CChhhhccCccccCCeeecC---CCCCCCccCccCCCeEEEEec-CC--------CCCceEEEEcC--
Confidence            99999999876 67899999999998644322   122347899999999999875 22        34799999752  


Q ss_pred             ccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC--
Q 006197          473 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--  550 (657)
Q Consensus       473 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~--  550 (657)
                                      ++||+|||+|++|++|++++.||.+|+|++ +|++|+|.+||+.+.++|+|.+|+|++..+.  
T Consensus       290 ----------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~  352 (414)
T PRK08308        290 ----------------DKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVA  352 (414)
T ss_pred             ----------------CceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCC
Confidence                            679999999999999999999999999997 7999999999999999999999999987654  


Q ss_pred             -CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccc
Q 006197          551 -SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTAT  629 (657)
Q Consensus       551 -~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~  629 (657)
                       +.++++++.....                  ..        +.++++++ ++|+.|++|..+.+++..      |+|++
T Consensus       353 ~~~~~~~v~~~~~~------------------~~--------~~l~~~l~-~~l~~~~~P~~i~~v~~i------P~t~~  399 (414)
T PRK08308        353 GERVKAKVISHEEI------------------DP--------VQLREWCI-QHLAPYQVPHEIESVTEI------PKNAN  399 (414)
T ss_pred             CceEEEEEEeCCCC------------------CH--------HHHHHHHH-HhCccccCCcEEEEeccC------CCCCC
Confidence             4677777765421                  11        22334443 679999999999987654      99999


Q ss_pred             cccchHHH
Q 006197          630 LKKKRNKL  637 (657)
Q Consensus       630 GKv~r~~l  637 (657)
                      ||++|+.|
T Consensus       400 GKi~r~~~  407 (414)
T PRK08308        400 GKVSRKLL  407 (414)
T ss_pred             cCeehhhh
Confidence            99999954

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=3.1e-53  Score=454.92  Aligned_cols=403  Identities=31%  Similarity=0.479  Sum_probs=314.3

Q ss_pred             HHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCE
Q 006197           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI  127 (657)
Q Consensus        48 l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~  127 (657)
                      |+++|+++||++|+++.   ++     +++||+||.++++++|.+|++.|+++||+|+++++|+++++++++||+++|++
T Consensus         1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~   72 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI   72 (417)
T ss_dssp             HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred             ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence            67899999999999971   12     79999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCChhHHHHHHhccCceEEEE----cchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHH
Q 006197          128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  203 (657)
Q Consensus       128 ~v~l~~~~~~~~l~~~l~~~~~~~ii~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l  203 (657)
                      ++|++|.++.+++.++++.++++++|+    +......+.... ........++.++......             ...+
T Consensus        73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~  138 (417)
T PF00501_consen   73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIF-KQEDPSSSIIILDRDDLPK-------------KEAL  138 (417)
T ss_dssp             EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHH-TTSTTTEEEEEESHSSCTT-------------CHHH
T ss_pred             ccccccccccccccccccccceeEEEEeccccccccccchhhh-ccccccccccccccccccc-------------cccc
Confidence            999999999999999999999999997    222211121111 1112344555555332100             0000


Q ss_pred             HhcCccCCccCCC-CCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHH-
Q 006197          204 LHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-  281 (657)
Q Consensus       204 ~~~~~~~~~~~~~-~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~-  281 (657)
                      .......... .. ..++++++++|||||||.||+|.++|+++++.+..+.  +... .+++  |++++.+|++|.+++ 
T Consensus       139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~  212 (417)
T PF00501_consen  139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLI  212 (417)
T ss_dssp             HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHH
T ss_pred             cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeecccccccccc
Confidence            0000000000 00 0568999999999999999999999999999988865  1110 1233  699999999999999 


Q ss_pred             HHHHHHHhcCcEEEEecC-C---hHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCC
Q 006197          282 VIEEYFFRRGASVGYYHG-D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGY  357 (657)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (657)
                      ...+.++..|+++++++. .   +..+++.++++++|+++++|.++..+.+..+.. ...                    
T Consensus       213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~~--------------------  271 (417)
T PF00501_consen  213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TKI--------------------  271 (417)
T ss_dssp             HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HHG--------------------
T ss_pred             ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-ccc--------------------
Confidence            668889999999999986 2   467899999999999999999999987521110 000                    


Q ss_pred             CCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCC-ceeeeccCCCCCCcccccc-CCCccccCcc
Q 006197          358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCF-PDEMCMVGTA  435 (657)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~~-~~~~~~~~~~  435 (657)
                                       ....++++|.++++|+++++++.+++++.++. ++++.||+||++..++... .......+++
T Consensus       272 -----------------~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~  334 (417)
T PF00501_consen  272 -----------------SKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSV  334 (417)
T ss_dssp             -----------------TTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSE
T ss_pred             -----------------cccccccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccc
Confidence                             00012479999999999999999999999887 9999999999999987664 2333445889


Q ss_pred             CcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccC-CccccCceEEEcCCCcEEEEecCcc
Q 006197          436 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKN  514 (657)
Q Consensus       436 G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~-g~~~TGDl~~~~~~G~l~i~GR~~d  514 (657)
                      |.|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.+.+.|.+ |||+|||+|++|++|.++++||.+|
T Consensus       335 G~~~~~~~~~ivd-~~~~-~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~  412 (417)
T PF00501_consen  335 GKPLPGVEVKIVD-PNTG-EPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDD  412 (417)
T ss_dssp             BEESTTEEEEEEC-TTTS-SBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSC
T ss_pred             ccccccccccccc-cccc-ccccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCC
Confidence            9999999999998 5422 45567789999999999999999999999999954 8999999999999999999999999


Q ss_pred             eeec
Q 006197          515 LIKI  518 (657)
Q Consensus       515 ~i~~  518 (657)
                      +||+
T Consensus       413 ~i~~  416 (417)
T PF00501_consen  413 MIKV  416 (417)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9996

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=5.3e-52  Score=417.52  Aligned_cols=500  Identities=19%  Similarity=0.179  Sum_probs=383.6

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...+++++|..+++++|+++|+++.   +.    .+++||+|+++.++++|++|+..|++.||.|+++|+|.+|+++++|
T Consensus        75 ~~~ti~~~F~~~vrr~p~k~aii~~---~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWl  147 (649)
T KOG1179|consen   75 ERRTIAELFLSQVRRQPDKPAIIYE---GP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWL  147 (649)
T ss_pred             cCCcHHHHHHHHHHhCCCccEEEEe---CC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHH
Confidence            4569999999999999999999997   33    2689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      +++++|++...||++...+.|.|.++.++++++|++.+..+.+.+.........-.++..+.....         ....+
T Consensus       148 GLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~---------~g~~~  218 (649)
T KOG1179|consen  148 GLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP---------DGIES  218 (649)
T ss_pred             hHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC---------chHHH
Confidence            999999999999999999999999999999999999998887766633322222333333322211         11112


Q ss_pred             HHHHHhcCccCCcc---CCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          200 WDEFLHLGKVNEME---ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       200 ~~~l~~~~~~~~~~---~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                      +...++.....+.+   .......++++++|||||||.||+.++||..+...+..+...+     +++++|+++..+|++
T Consensus       219 L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPLY  293 (649)
T KOG1179|consen  219 LLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPLY  293 (649)
T ss_pred             HHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchhH
Confidence            33333332222322   2334678899999999999999999999999988888766666     899999999999999


Q ss_pred             HHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhh
Q 006197          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMN  354 (657)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (657)
                      |+.+.+. ...++..|+|+|+-.. ++..+++-..+|++|+....-.+++-|++......++.                 
T Consensus       294 Hsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~-----------------  356 (649)
T KOG1179|consen  294 HSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQ-----------------  356 (649)
T ss_pred             HHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcC-----------------
Confidence            9999886 5668999999999876 99999999999999999999988888876433222211                 


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCc-eeeeccCCCCCCccccccCCCccccC
Q 006197          355 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFPDEMCMVG  433 (657)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-v~~~yG~tE~~~~~~~~~~~~~~~~~  433 (657)
                                               +.+|.++  |..+.+++++.|.+.||.+ |.+.||+||+....... .   ...|
T Consensus       357 -------------------------HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~-d---~~vG  405 (649)
T KOG1179|consen  357 -------------------------HKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY-D---GRVG  405 (649)
T ss_pred             -------------------------ceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeee-c---Cccc
Confidence                                     2556554  8889999999999999876 99999999987654433 2   1123


Q ss_pred             ccCcC-------ccCeeEEEee-------cCCCCCCCCCCCCCceEEEc--cCCc---ccccCCCchhhhcc-----c--
Q 006197          434 TAGPV-------SVYSELRLEE-------VPEMGYSPLDDPPCGEVCVR--GKTL---FSGYYKNPDLTRES-----I--  487 (657)
Q Consensus       434 ~~G~~-------~~~~~~~iv~-------~~~~~~~~~~~~~~GEl~v~--g~~~---~~gy~~~~~~~~~~-----~--  487 (657)
                      .+|+.       .|-.-+++.+       .++|--.+++.||.|.++-+  ....   |.||.++.+.+.+.     |  
T Consensus       406 A~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkk  485 (649)
T KOG1179|consen  406 ACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKK  485 (649)
T ss_pred             cccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhcc
Confidence            33331       1111122111       02222234667888966433  2233   89999977766554     3  


Q ss_pred             cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC----CeEEEEEecChhh
Q 006197          488 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEED  563 (657)
Q Consensus       488 ~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~----~~~~a~v~~~~~~  563 (657)
                      -|-||+|||+-.+|+.|++|+.+|..|++.+ +|++|+..|+|.+|..+.++.||.|+|+.-+    ...-|.|+..++.
T Consensus       486 GD~~f~tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~  564 (649)
T KOG1179|consen  486 GDVYFNTGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTT  564 (649)
T ss_pred             CcEEEeeCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcc
Confidence            2459999999999999999999999999999 7999999999999999999999999996533    2555666655543


Q ss_pred             HHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006197          564 TKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  640 (657)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~  640 (657)
                      .                    .....+.+.+     +..||+|.+|..+.+.++.      ++|.+-|.+|..|.+.
T Consensus       565 ~--------------------~d~~~l~~~l-----~~~LP~YA~P~FlRl~~~i------~~TgTFKl~K~~L~~e  610 (649)
T KOG1179|consen  565 E--------------------KDLEKLYQHL-----RENLPSYARPRFLRLQDEI------EKTGTFKLQKTELQKE  610 (649)
T ss_pred             c--------------------chHHHHHHHH-----HhhCccccchHHHHHHhhh------hcccchhhHHHHHHHc
Confidence            1                    1122233333     4689999999999998776      8999999999998765

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=9.6e-50  Score=426.63  Aligned_cols=389  Identities=25%  Similarity=0.323  Sum_probs=324.8

Q ss_pred             eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcc
Q 006197           78 TYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  156 (657)
Q Consensus        78 Ty~el~~~v~~lA~~L~~-~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~  156 (657)
                      ||.||.+.++++|.+|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+.+..+++.+++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCc
Q 006197          157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK  236 (657)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK  236 (657)
                      .....+.....       .++......                 ...................+++++++|||||||.||
T Consensus        81 ~~~~~~~~~~~-------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK  136 (408)
T TIGR01733        81 ALASRLAGLVL-------PIILVDPLE-----------------LAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK  136 (408)
T ss_pred             chhhhccccCC-------ceEEechhh-----------------hhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence            87665433211       111111110                 000000000011111135789999999999999999


Q ss_pred             eeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhc
Q 006197          237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELK  312 (657)
Q Consensus       237 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~  312 (657)
                      +|.+||+++...+..+...+     .+.++|++++..|++|.+++...+.++..|+++++++.    .+..+...+++++
T Consensus       137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  211 (408)
T TIGR01733       137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP  211 (408)
T ss_pred             EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence            99999999999988877766     78899999999999999998888999999999998876    2578999999999


Q ss_pred             CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCC
Q 006197          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL  392 (657)
Q Consensus       313 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l  392 (657)
                      +|.+.++|.+++.|.+...                                             ..++++|.++++|+++
T Consensus       212 ~t~l~~~p~~~~~l~~~~~---------------------------------------------~~~~~l~~v~~~g~~~  246 (408)
T TIGR01733       212 VTVLNLTPSLLALLAAALP---------------------------------------------PALASLRLVILGGEAL  246 (408)
T ss_pred             ceEEEeCHHHHHHHHHhhh---------------------------------------------hcccCceEEEEeCccC
Confidence            9999999999999875422                                             1114899999999999


Q ss_pred             CHHHHHHHHHhcC-CceeeeccCCCCCCccccccCCCc--c--ccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEE
Q 006197          393 STEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEM--C--MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV  467 (657)
Q Consensus       393 ~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~--~--~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v  467 (657)
                      ++++.+.+.+.++ ..+++.||+||++..+........  .  ...++|.|+++++++|++ +++  .+++.|+.|||++
T Consensus       247 ~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~--~~~~~g~~Gel~v  323 (408)
T TIGR01733       247 TPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDL--RPVPVGVVGELYI  323 (408)
T ss_pred             CHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCC--CCCCCCCceEEEe
Confidence            9999999999987 899999999999987753332221  1  157899999999999998 554  4556778999999


Q ss_pred             ccCCcccccCCCchhhhccccC-------C--ccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcc
Q 006197          468 RGKTLFSGYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI  538 (657)
Q Consensus       468 ~g~~~~~gy~~~~~~~~~~~~~-------g--~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~  538 (657)
                      +|+.++.||+++++.+.+.|..       |  ||+|||+|++|++|++++.||.+|+|++ +|++++|.+||+.|..++.
T Consensus       324 ~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~~~~  402 (408)
T TIGR01733       324 GGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLRHPG  402 (408)
T ss_pred             cCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhcCcc
Confidence            9999999999999988887732       2  9999999999999999999999999997 8999999999999999999


Q ss_pred             cceEEE
Q 006197          539 IEDIWV  544 (657)
Q Consensus       539 V~~~~v  544 (657)
                      |.+|+|
T Consensus       403 v~~~~v  408 (408)
T TIGR01733       403 VREAVV  408 (408)
T ss_pred             hhhhcC
Confidence            999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-42  Score=363.64  Aligned_cols=316  Identities=23%  Similarity=0.288  Sum_probs=255.5

Q ss_pred             CCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEE
Q 006197          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY  296 (657)
Q Consensus       217 ~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~  296 (657)
                      ..++++++++|||||||.||+|+++|+++..........       +...++++..+|++|.+++...+.++..|+++++
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~  104 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR-------LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVE  104 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc-------cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEe
Confidence            456899999999999999999999999998887664433       2345788999999999998878888999999887


Q ss_pred             ec----CChHHHHHHHhhhc--CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHH
Q 006197          297 YH----GDLNALRDDLMELK--PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLA  370 (657)
Q Consensus       297 ~~----~~~~~~~~~i~~~~--~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (657)
                      +.    .++..+.+.+++++  .++...+|..+..+......                                      
T Consensus       105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~--------------------------------------  146 (358)
T PRK07824        105 LDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA--------------------------------------  146 (358)
T ss_pred             cCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc--------------------------------------
Confidence            33    27899999999998  45666678776654321000                                      


Q ss_pred             HHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecC
Q 006197          371 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVP  450 (657)
Q Consensus       371 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~  450 (657)
                           ....+++|.+++||+++++.+.+.+.+ +++++++.||+||++..+.           ..|.|++++++++.+  
T Consensus       147 -----~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~-----------~~G~~~~g~~v~i~~--  207 (358)
T PRK07824        147 -----TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV-----------YDGVPLDGVRVRVED--  207 (358)
T ss_pred             -----cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC-----------cCceeCCCCEEEecC--
Confidence                 001148999999999999999998886 4899999999999876432           358899999999854  


Q ss_pred             CCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHH
Q 006197          451 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL  529 (657)
Q Consensus       451 ~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~i  529 (657)
                                  |||+++|+.++.||++++..+  .| .+|||+|||+|++ ++|.+++.||.+|+|++ +|++|+|.+|
T Consensus       208 ------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~p~eI  271 (358)
T PRK07824        208 ------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVLPQVV  271 (358)
T ss_pred             ------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEECHHHH
Confidence                        999999999999999987643  34 6789999999999 89999999999999997 8999999999


Q ss_pred             HHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCc
Q 006197          530 ENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGF  606 (657)
Q Consensus       530 E~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~  606 (657)
                      |+.|.+||+|.+|+|++.++.   +.++++++...+.                    ..    ..++|++.++ +.|+.|
T Consensus       272 E~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~--------------------~~----~~~~i~~~~~-~~l~~~  326 (358)
T PRK07824        272 EAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGP--------------------AP----TLEALRAHVA-RTLDRT  326 (358)
T ss_pred             HHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCC--------------------Cc----CHHHHHHHHH-hhCccc
Confidence            999999999999999996643   4788887765432                    00    1233444443 689999


Q ss_pred             eeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          607 EHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       607 ~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                      ++|..|+++++      +|+|++||++|++|+++|.+
T Consensus       327 ~~P~~i~~v~~------lP~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        327 AAPRELHVVDE------LPRRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             cCCCEEEEecC------CCCCCCccccHHHHHHHhhc
Confidence            99999999765      49999999999999998864

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.6e-37  Score=345.43  Aligned_cols=411  Identities=22%  Similarity=0.228  Sum_probs=332.5

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      +...++++.|.+.+.+.|+++|+.+.   +      .++||+++..+++++|+.|.+.|+.++++|+++.+.++++++.+
T Consensus       224 ~~~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~  294 (642)
T COG1020         224 PLRLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVAL  294 (642)
T ss_pred             CccchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHH
Confidence            33478999999999999999998864   2      58999999999999999999999999999999998899999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      +|++++|..++|++|.++.+++..+++.++++.+++...........     +.    +..+...               
T Consensus       295 l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~---------------  350 (642)
T COG1020         295 LAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL-----PG----LALDDAL---------------  350 (642)
T ss_pred             HHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccC-----Cc----ccccccc---------------
Confidence            99999999999999999999999999999999999983322211000     00    1111100               


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                           .... ..........+++.++++|||||||.||||..+|+++.+...+....+     .++.+|+++...++.+.
T Consensus       351 -----~~~~-~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD  419 (642)
T COG1020         351 -----SEIP-DTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFD  419 (642)
T ss_pred             -----ccCC-ccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccc
Confidence                 0000 000001233568999999999999999999999999999777766655     78999999999999887


Q ss_pred             HHHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhh
Q 006197          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMN  354 (657)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (657)
                      ......+.++..|+++++...    ++..+...+.++++|++..+|..+..+.......... .                
T Consensus       420 ~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~-~----------------  482 (642)
T COG1020         420 ASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLI-S----------------  482 (642)
T ss_pred             hhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcccc-C----------------
Confidence            777788899999999998875    7899999999999999999999998876431100000 0                


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc--CCceeeeccCCCCCCccccccCCCccc-
Q 006197          355 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMCM-  431 (657)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~v~~~yG~tE~~~~~~~~~~~~~~~-  431 (657)
                                             ..+.+|.+++||+.++..+...+....  ...+.+.||+||+.............. 
T Consensus       483 -----------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~  539 (642)
T COG1020         483 -----------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELES  539 (642)
T ss_pred             -----------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCC
Confidence                                   002489999999999999999887655  467999999999776655444322211 


Q ss_pred             cCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccC-CccccCceEEEcCCCcEEEEe
Q 006197          432 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIID  510 (657)
Q Consensus       432 ~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~-g~~~TGDl~~~~~~G~l~i~G  510 (657)
                      ...+|.|++++.+++.+ ....  +++.+..||+++.|.++..||+++++.|.+.|.. .+|+|||++++..+|.+.++|
T Consensus       540 ~~piG~p~~n~~~~ild-~~~~--~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lg  616 (642)
T COG1020         540 RVPIGRPVANTQLYILD-QGLR--PLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLG  616 (642)
T ss_pred             CCCcceeeCCCeEEEEC-CCCC--cCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEec
Confidence            36899999999999998 4444  4555578999999999999999999999999955 499999999999999999999


Q ss_pred             cCcceeecCCceeeccHHHHHHHhcCc
Q 006197          511 RKKNLIKISQGEYVALEYLENVYCVAP  537 (657)
Q Consensus       511 R~~d~i~~~~G~~v~~~~iE~~l~~~~  537 (657)
                      |.|+++|+ .|++|.+.+||..+.++|
T Consensus       617 r~D~qvki-~g~Riel~eie~~l~~~~  642 (642)
T COG1020         617 RKDSQVKI-RGFRIELGEIEAALAEQP  642 (642)
T ss_pred             cccceeEe-ceEecCcHHHHHHHhcCC
Confidence            99999998 699999999999998875

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=1.9e-35  Score=308.42  Aligned_cols=287  Identities=18%  Similarity=0.133  Sum_probs=220.3

Q ss_pred             CceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCC--CCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEE
Q 006197          220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  296 (657)
Q Consensus       220 ~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~  296 (657)
                      +..++++|||||||.||+|.+||+++.+.+..+...+     ++  ...+++++.+|++|.+++.. .+.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            4578999999999999999999999998887766655     44  34468999999999999764 5667889999988


Q ss_pred             ecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHH
Q 006197          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVK  375 (657)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (657)
                      ... ++..+++.++.+  |++.++|++++.+.+..                                             
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~---------------------------------------------  202 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD---------------------------------------------  202 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC---------------------------------------------
Confidence            765 677777777643  89999999998875420                                             


Q ss_pred             HHcCCcEEEEEEcCCCCCHHHHHHHHHhcCC-ceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCC
Q 006197          376 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY  454 (657)
Q Consensus       376 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~  454 (657)
                       ..+++++. ++||+++++++.+.+.+. +. .+++.||+||++++++....      ++.|.++|+.++++ +  ++. 
T Consensus       203 -~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~~------~~~~~~~p~~~~~~-~--~~~-  269 (386)
T TIGR02372       203 -YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREAP------DDPFRLLPDLACFA-D--TLS-  269 (386)
T ss_pred             -cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccCC------CCCcccCCCccccC-C--Ccc-
Confidence             00136775 688999999999999875 54 69999999999875543221      34567777765433 1  110 


Q ss_pred             CCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHh
Q 006197          455 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC  534 (657)
Q Consensus       455 ~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~  534 (657)
                               +   .|+                  ..|++|||++++|++|+++++||+||+|++ +|++|+|.+||+.|.
T Consensus       270 ---------~---~g~------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~~l~  318 (386)
T TIGR02372       270 ---------S---AGL------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRDILE  318 (386)
T ss_pred             ---------C---CCc------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHHHHH
Confidence                     0   011                  125889999999999999999999999997 899999999999999


Q ss_pred             cCcccceEEEEecCCCCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEE
Q 006197          535 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVIL  614 (657)
Q Consensus       535 ~~~~V~~~~vv~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~  614 (657)
                      +||+|.+|+|+..  .+.+.++|++.++.                  ..    ..+.++|+++++ .+||.|++|..+.+
T Consensus       319 ~~p~V~~~~v~~~--g~~~~a~vv~~~~~------------------~~----~~~~~~l~~~~~-~~L~~~~~P~~i~~  373 (386)
T TIGR02372       319 RNPRVRAAAVRLD--GRRLKAFIVVAEDA------------------DE----AELEIELRATAA-RHLPAPARPDRFRF  373 (386)
T ss_pred             cCCCceEEEEEcC--CceEEEEEEECCCC------------------Ch----HHHHHHHHHHHH-HhCCCCCCCcEEEE
Confidence            9999999999743  46788888887532                  11    122345555555 67999999999999


Q ss_pred             ecCCCCCCCCccccccccc
Q 006197          615 DPRPFDMERDLVTATLKKK  633 (657)
Q Consensus       615 ~~~~f~~~~~P~t~~GKv~  633 (657)
                      +++.      |+|++||++
T Consensus       374 ~~~l------P~t~~GKi~  386 (386)
T TIGR02372       374 GTEL------PRTGAGKLA  386 (386)
T ss_pred             cccC------CCCCCCCcC
Confidence            7664      999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=100.00  E-value=1.1e-31  Score=286.91  Aligned_cols=518  Identities=15%  Similarity=0.142  Sum_probs=353.1

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      .+|.++|+++++.+||.+|+...   +..+..-.++||++|..+|.+++.+|.+. -+++||.|++++++++|++++++|
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~  846 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA  846 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence            78999999999999999999987   77777778999999999999999999977 599999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCC------hhHHHHHHhccCceEEEEcchhhhhhhcccccccc---CceEEEEecCCcHHHHHHHh
Q 006197          121 CNALSLICVPLYDTLG------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ---RLRVMVCFTSLTAEQKEMAV  191 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~  191 (657)
                      |+.+|.+++|+.|...      .+.+..+++.+++.+|+++......+.+.......   .+..++.+++....   +  
T Consensus       847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t---~--  921 (1363)
T KOG3628|consen  847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPET---I--  921 (1363)
T ss_pred             HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchh---h--
Confidence            9999999999987643      34689999999999999998766655432221111   12222232322211   0  


Q ss_pred             hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEE
Q 006197          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (657)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (657)
                           .....++.+.  ....++.....+.+|++-+.--++|+--++.++|.++++.+.......     .+.+..-++.
T Consensus       922 -----~k~~~~~~k~--~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl~~  989 (1363)
T KOG3628|consen  922 -----RKRKKNIKKL--NTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPLLG  989 (1363)
T ss_pred             -----hhhhhhhhcc--CCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCceEE
Confidence                 0011111111  112223334678899999999999999999999999999999998877     5555555555


Q ss_pred             ecChhHHHHHH-HHHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 006197          272 FLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (657)
Q Consensus       272 ~~pl~~~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  345 (657)
                      +.+.+.+.|+. +++...++|.+.++++.     ++..|+..|+++++.-++.+-..+..+.+.+....+......    
T Consensus       990 ~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~g---- 1065 (1363)
T KOG3628|consen  990 CSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRG---- 1065 (1363)
T ss_pred             EecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhh----
Confidence            55555555554 68889999999888775     899999999999999888888777776655443322211100    


Q ss_pred             HHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc---CC---ceeeeccCCCCCC
Q 006197          346 DALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLTETCG  419 (657)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~~---~v~~~yG~tE~~~  419 (657)
                                             .+.        ++ ..++..-+.....+...+.+.+   |.   .+...|+..=-..
T Consensus      1066 -----------------------nn~--------s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~ 1113 (1363)
T KOG3628|consen 1066 -----------------------NNT--------SS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPF 1113 (1363)
T ss_pred             -----------------------ccc--------cc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChH
Confidence                                   000        11 2223333333344444444433   11   1222333222111


Q ss_pred             ccccccCC--------------------------CccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcc
Q 006197          420 PTTVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF  473 (657)
Q Consensus       420 ~~~~~~~~--------------------------~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~  473 (657)
                      ++.....+                          ........|...+++++.|++ |+.. .++.+|+.||||++|.+-+
T Consensus      1114 Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-PEtk-~pc~dge~GEIW~~S~hnA 1191 (1363)
T KOG3628|consen 1114 ICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN-PETK-GPCRDGELGEIWVNSAHNA 1191 (1363)
T ss_pred             hhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC-Cccc-cccccCCcceEEecccccc
Confidence            11111100                          001123457788999999999 6544 7888999999999999888


Q ss_pred             cccCCCchh-hhccc----------cCCccccCceEEEc------CCC----cEEEEecCcceeecCCceeeccHHHHHH
Q 006197          474 SGYYKNPDL-TRESI----------IDGWFHTGDIGQIL------PNG----VVKIIDRKKNLIKISQGEYVALEYLENV  532 (657)
Q Consensus       474 ~gy~~~~~~-~~~~~----------~~g~~~TGDl~~~~------~~G----~l~i~GR~~d~i~~~~G~~v~~~~iE~~  532 (657)
                      .+|++..+. ....|          ..+|.||||+|++.      .+|    -||++|-.++.+.+ +|.+.+|.+||..
T Consensus      1192 ~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~T 1270 (1363)
T KOG3628|consen 1192 SCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETT 1270 (1363)
T ss_pred             ccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHH
Confidence            877754221 11111          23599999999973      222    48999999999998 7999999999999


Q ss_pred             H-hcCcccceEEEEecCCCCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeE
Q 006197          533 Y-CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKG  611 (657)
Q Consensus       533 l-~~~~~V~~~~vv~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~  611 (657)
                      + +.||.|.+|+|+..  ...++.+++...+..                  ..++--.+   +...+. +   ++.+..-
T Consensus      1271 V~~vH~~I~~cavF~~--~glvVvviE~~gq~~------------------~~~LvPlI---v~~vL~-e---H~iI~dv 1323 (1363)
T KOG3628|consen 1271 VERVHPSIGGCAVFQA--TGLVVVVIECHGQQE------------------LADLVPLI---VNVVLE-E---HYIILDV 1323 (1363)
T ss_pred             HHHhcccccceeeEee--CCeEEEEEEecCchh------------------HhhhhHHH---HHHHHh-h---cceEEEE
Confidence            9 57999999999985  356666666665320                  01111111   222222 1   3445566


Q ss_pred             EEEecCCCCCCCCccccccccchHHHHHHHHH-HHHHHH
Q 006197          612 VILDPRPFDMERDLVTATLKKKRNKLLIYYQV-EIDQLY  649 (657)
Q Consensus       612 i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~-~i~~ly  649 (657)
                      +.|++    ...+|+++.|..+|..+++.|-. .++-+|
T Consensus      1324 V~fV~----~G~~p~~~~gEK~R~~I~~~w~~~kL~~~~ 1358 (1363)
T KOG3628|consen 1324 VAFVD----KGVFPRNSRGEKQRAHILDSWLAGKLDPIY 1358 (1363)
T ss_pred             EEEec----CCccccCCchhhHHHHHHHHHHhcccceee
Confidence            66666    36789999999999999998854 555554

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=2e-32  Score=293.01  Aligned_cols=333  Identities=19%  Similarity=0.147  Sum_probs=230.2

Q ss_pred             CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH-HHHHHHHHhcCcEEEE
Q 006197          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD-RVIEEYFFRRGASVGY  296 (657)
Q Consensus       218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g-~~~~~~~l~~G~~~v~  296 (657)
                      +.++++.+++||||||.||++.+||.++..........+..  .++.++|++++..++.+..+ ....+.++..|++++.
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  150 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRA--AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP  150 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHH--cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence            45678889999999999999999999987665443322211  26788999988766554333 2234456778988887


Q ss_pred             ecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHH
Q 006197          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVK  375 (657)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (657)
                      ++. ++..+++.|++++||+++++|+++..|++..........                                     
T Consensus       151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~-------------------------------------  193 (422)
T TIGR02155       151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA-------------------------------------  193 (422)
T ss_pred             cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc-------------------------------------
Confidence            654 789999999999999999999999998765432110000                                     


Q ss_pred             HHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCc--cCeeEEEeecCCCC
Q 006197          376 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS--VYSELRLEEVPEMG  453 (657)
Q Consensus       376 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~iv~~~~~~  453 (657)
                         ..++|.++++|+++++++.+.+++.+|+++++.||+||+++.........    ...|.++  ++..++|+| ++++
T Consensus       194 ---~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~----~~~g~~~~~~~~~~eivd-~~~g  265 (422)
T TIGR02155       194 ---QTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE----TQDGLHIWEDHFYPEIID-PHTG  265 (422)
T ss_pred             ---cCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc----cCCCceEecCeeEEEEEC-CCCC
Confidence               03899999999999999999999999999999999999853211111100    1122233  356778887 4333


Q ss_pred             CCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCC-C-----cEEEEecCcceeecCCceeeccH
Q 006197          454 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-G-----VVKIIDRKKNLIKISQGEYVALE  527 (657)
Q Consensus       454 ~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~-G-----~l~i~GR~~d~i~~~~G~~v~~~  527 (657)
                       .+++.|+.|||++++.            +...|+.+||+|||+++++++ |     .+++.||.+|+|++ .|.+|+|.
T Consensus       266 -~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~~v~p~  331 (422)
T TIGR02155       266 -EVLPDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGVNVFPT  331 (422)
T ss_pred             -CCCCCCCeeEEEEecC------------CccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCEEECHH
Confidence             4556788999999973            234456789999999999875 4     46899999999997 79999999


Q ss_pred             HHHHHHhcCcccc-eEEEEecCCC--CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCC
Q 006197          528 YLENVYCVAPIIE-DIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLR  604 (657)
Q Consensus       528 ~iE~~l~~~~~V~-~~~vv~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  604 (657)
                      +||+.|.+||+|. ++.++.....  +.+.+.|+...+...        .       ...+....+.++|.+.++ ..+.
T Consensus       332 eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~--------~-------~~~~~~~~~~~~i~~~~~-~~~~  395 (422)
T TIGR02155       332 QLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYT--------L-------RLHEQASLLAGEIQHTIK-QEVG  395 (422)
T ss_pred             HHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCccc--------c-------cchHHHHHHHHHHHHHHH-hccC
Confidence            9999999999998 5555443222  366666666543200        0       001112233444555554 4554


Q ss_pred             CceeeeEEEEecCCCCCCCCccccccccchH
Q 006197          605 GFEHIKGVILDPRPFDMERDLVTATLKKKRN  635 (657)
Q Consensus       605 ~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~  635 (657)
                      .+.   .|.++.    ++.+|+|+ ||++|.
T Consensus       396 ~~~---~v~~~~----~~~lp~~~-GK~~~~  418 (422)
T TIGR02155       396 VSM---DVHLVE----PGSLPRSE-GKARRV  418 (422)
T ss_pred             cEE---EEEEEC----CCCccCCC-CCceEE
Confidence            442   355542    35679988 999874

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=2.9e-29  Score=278.10  Aligned_cols=505  Identities=18%  Similarity=0.143  Sum_probs=326.0

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      +.++.+.+...+...|.+++..+.+. ....+...++||++....++.+++.|...|.-+|+.|++++..+.++++..++
T Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~  113 (1032)
T KOG1178|consen   35 MGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFA  113 (1032)
T ss_pred             hcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeee
Confidence            56777889999999999999988765 23444556899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCC----hhH---HHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhC
Q 006197          121 CNALSLICVPLYDTLG----PGA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~----~~~---l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (657)
                      ++++|..+++++|.++    ++.   +.+.+......++  .....-.              +.+.+-..          
T Consensus       114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~--~~l~i~~--------------~~~~~~~~----------  167 (1032)
T KOG1178|consen  114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV--RRLNIID--------------ILLNSLFP----------  167 (1032)
T ss_pred             hhhcceEEEEecCCCcccccchHHHhhhhhheeccceeh--hhhhhHH--------------HHhhcccc----------
Confidence            9999999999999999    221   1111111111111  0000000              00000000          


Q ss_pred             CcceeeHHHHH-hcCccCCccC-CCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEE
Q 006197          194 GIKPYSWDEFL-HLGKVNEMEI-LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (657)
Q Consensus       194 ~~~~~~~~~l~-~~~~~~~~~~-~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (657)
                      ...+....+.+ ........+. ....+|..+++.||||+||.||+|..+|..++....++...+     .+...+++-.
T Consensus       168 ~~sv~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-----~~t~s~~~~~  242 (1032)
T KOG1178|consen  168 KLSVETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-----PPTGSDRFTF  242 (1032)
T ss_pred             ccchhhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-----CcCccchhhh
Confidence            00000111111 1111112222 233567789999999999999999999999999999977766     6777776533


Q ss_pred             ecChh-HHHHHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006197          272 FLPLA-HILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (657)
Q Consensus       272 ~~pl~-~~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (657)
                      ....+ +..-.......+..|..+..+..    ++..+.+.++++.++..+.+|++.+.++........           
T Consensus       243 ~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~-----------  311 (1032)
T KOG1178|consen  243 KTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLP-----------  311 (1032)
T ss_pred             hheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchh-----------
Confidence            33332 22222233344666666555443    489999999999999999999999888754322100           


Q ss_pred             HHHHHHhhcCCCCCCcchhHHHH-HHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCC-ceeeeccCCCCCCccccc
Q 006197          347 ALKLAWMNMGYKQREASPLADLL-AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVC  424 (657)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~  424 (657)
                                        .+... ..+++ ...-+.|+....+|++....+...+...+-. -...-|++++..+..+..
T Consensus       312 ------------------~l~~~~~~~dl-~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~  372 (1032)
T KOG1178|consen  312 ------------------LLEHAFSLSDL-LTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYD  372 (1032)
T ss_pred             ------------------hhhhhhhcccc-cccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHH
Confidence                              00000 00000 0001489999999999999998866554421 122338999888876654


Q ss_pred             cCCCcc------ccCccCcCcc----CeeEEEeecCCCCCCC--CCCCCCceEEEccCCcccccCCCchhhhccc-----
Q 006197          425 FPDEMC------MVGTAGPVSV----YSELRLEEVPEMGYSP--LDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-----  487 (657)
Q Consensus       425 ~~~~~~------~~~~~G~~~~----~~~~~iv~~~~~~~~~--~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-----  487 (657)
                      ......      ....+.+-..    .+-+.+.. ..++..+  ++.+..|.-+-.+..+..| +..++.....+     
T Consensus       373 ~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~  450 (1032)
T KOG1178|consen  373 DFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDG  450 (1032)
T ss_pred             hhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccceeecc-ccchhhcCCccccccc
Confidence            332110      0011111111    01111221 1122111  1112222223333444444 22333322222     


Q ss_pred             -cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhh
Q 006197          488 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEED  563 (657)
Q Consensus       488 -~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~  563 (657)
                       .+.+|+|||+|+...+|.+.+.||.|++||+ +|.++...+|+.++..||.|.++++....++   +.+++||+.....
T Consensus       451 ~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~  529 (1032)
T KOG1178|consen  451 VKARIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGS  529 (1032)
T ss_pred             chhhcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCC
Confidence             2458999999999899999999999999998 7999999999999999999999999886544   4799999988753


Q ss_pred             HHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006197          564 TKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  640 (657)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~  640 (657)
                                         +..+    ...|+.++. +.|+.|++|..++.++.      +|+|++||||+++|.+.
T Consensus       530 -------------------~~~~----~~~i~~~l~-~~La~y~vPs~~V~l~~------vPl~~~GKvDkkaL~~~  576 (1032)
T KOG1178|consen  530 -------------------KSVL----IRDIRNYLK-KELASYMLPSLVVPLAK------VPLNPNGKVDKKALLEY  576 (1032)
T ss_pred             -------------------Cchh----HHHHHHhhc-ccccceecceEEEEhhh------CCcCCCCCcChhhhhhh
Confidence                               1111    445566665 78999999998887655      49999999999999883

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.95  E-value=1.4e-25  Score=240.39  Aligned_cols=263  Identities=17%  Similarity=0.140  Sum_probs=186.9

Q ss_pred             CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEE
Q 006197          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  296 (657)
Q Consensus       218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~  296 (657)
                      +.++++.+.+||||||.||++.+||.++..........+.  ..++.++|+++...|+.+..+... .+.++..|++++.
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~--~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~  161 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFV--SQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP  161 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHH--HcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence            4568889999999999999999999998877655443321  126788999999988877655443 3445777877643


Q ss_pred             ecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHH
Q 006197          297 YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKA  376 (657)
Q Consensus       297 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (657)
                       .......++.|+++++|++.++|+.+..|.+.+........                                      
T Consensus       162 -~~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~--------------------------------------  202 (445)
T TIGR03335       162 -EGKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPA--------------------------------------  202 (445)
T ss_pred             -CCchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc--------------------------------------
Confidence             33445678999999999999999988877654432210000                                      


Q ss_pred             HcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCC
Q 006197          377 RLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP  456 (657)
Q Consensus       377 ~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~  456 (657)
                        ..++|.+++||+++++++.+.+.+.+|+++++.||+||++.. ..+...     .....+.+.+.++|+| ++++ .+
T Consensus       203 --~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~-~~c~~~-----~g~h~~~d~~~vEIvD-p~~~-~~  272 (445)
T TIGR03335       203 --ESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMC-GECQAV-----AGLHVPEDLVHLDVYD-PRHQ-RF  272 (445)
T ss_pred             --cCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhhe-EEecCC-----CCccccCCceEEEEEc-CCCC-CC
Confidence              038999999999999999999999899999999999998632 222110     1122233457788998 5544 56


Q ss_pred             CCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcC-C----Cc----EEEEecCcceeecCCceeeccH
Q 006197          457 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-N----GV----VKIIDRKKNLIKISQGEYVALE  527 (657)
Q Consensus       457 ~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~-~----G~----l~i~GR~~d~i~~~~G~~v~~~  527 (657)
                      ++.|+.|||++++-.-....-.-| .-       -|+|||++.+.. +    |+    +...||.||++++ +|.+|+|.
T Consensus       273 vp~Ge~GELvvT~L~~~~~r~~~P-li-------RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g~~~~p~  343 (445)
T TIGR03335       273 LPDGECGRIVLTTLLKPGERCGSL-LI-------NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SGVPFNRV  343 (445)
T ss_pred             CcCCCceEEEEEecCCCCccCCce-EE-------EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CCEEeCHH
Confidence            678899999998743210000000 00       189999998632 2    22    4557999999999 79999999


Q ss_pred             HHHHHHhcC---cccc
Q 006197          528 YLENVYCVA---PIIE  540 (657)
Q Consensus       528 ~iE~~l~~~---~~V~  540 (657)
                      +||++|.++   +++.
T Consensus       344 ~ie~~l~~~~~~~~~~  359 (445)
T TIGR03335       344 DVERAVFQRENMDSLT  359 (445)
T ss_pred             HHHHHHhccCCCCCCC
Confidence            999999995   5553

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.93  E-value=3.6e-24  Score=207.03  Aligned_cols=223  Identities=15%  Similarity=0.040  Sum_probs=163.2

Q ss_pred             HHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHHhcCC
Q 006197           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSL  126 (657)
Q Consensus        48 l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~  126 (657)
                      |+..++++|+++|+++.   ++..++-+++||+|+.++++++|++|++ .|+++||+|+++++|+++++++++||+++|+
T Consensus         2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            56788899999999864   3222123689999999999999999998 6999999999999999999999999999999


Q ss_pred             EEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHhc
Q 006197          127 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL  206 (657)
Q Consensus       127 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  206 (657)
                      +++|++             .+++++++++++.......      .  +.++.+........ ..........+|.+.+..
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~~------~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  136 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAAG------S--GEVVALSLDPLGRR-VAGELPPGVIDFAPEVRV  136 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhccc------C--CceEEEeccccccC-CCCCCCCcccchhhhhhc
Confidence            999995             6789999999887765421      1  22222211000000 000001122355555543


Q ss_pred             CccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HH
Q 006197          207 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EE  285 (657)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~  285 (657)
                      ......+.....++|+++++||||+         +|++++.+.    ..+     ++.++|+++ .+|++|.+|+.. ++
T Consensus       137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~  197 (227)
T TIGR03089       137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLATLL  197 (227)
T ss_pred             cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHHHH
Confidence            2122222213466899999999986         566665554    223     789999999 999999999975 67


Q ss_pred             HHHhcCcEEEEecC-ChHHHHHHHhhhcCe
Q 006197          286 YFFRRGASVGYYHG-DLNALRDDLMELKPT  314 (657)
Q Consensus       286 ~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t  314 (657)
                      .+|..|+++++++. ++..+++.|+++|+|
T Consensus       198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       198 APLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            78999999998876 999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.92  E-value=1e-22  Score=206.70  Aligned_cols=284  Identities=21%  Similarity=0.202  Sum_probs=210.3

Q ss_pred             CCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh-HHHHHHHHHHHHhcCcEEE
Q 006197          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA-HILDRVIEEYFFRRGASVG  295 (657)
Q Consensus       217 ~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~-~~~g~~~~~~~l~~G~~~v  295 (657)
                      .+.++...|--||||||+|+.+.+|+..+..++..+...+...  +...+|++....... +..|+...+.+--.|++++
T Consensus        87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~--g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vi  164 (438)
T COG1541          87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSA--GVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVI  164 (438)
T ss_pred             ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEE
Confidence            3456667788999999999999999999999888887766333  678888887766532 2223333444555666665


Q ss_pred             EecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHH
Q 006197          296 YYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKV  374 (657)
Q Consensus       296 ~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (657)
                      -... +....+..++.+++|++.++|+.+..|++.+++.......                                   
T Consensus       165 p~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~-----------------------------------  209 (438)
T COG1541         165 PISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDK-----------------------------------  209 (438)
T ss_pred             ccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhh-----------------------------------
Confidence            4444 8999999999999999999999999998877655311000                                   


Q ss_pred             HHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCcc-ccccCCCccccCccCcCccCeeEEEeecCCCC
Q 006197          375 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT-TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG  453 (657)
Q Consensus       375 ~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~-~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~  453 (657)
                           .+||.+++|+|++++++.+.+.+.+|+.+++.||+||..+.. ..|....     .....-+...+.++| |+.+
T Consensus       210 -----~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~-----glhi~eD~~~~Ei~d-P~t~  278 (438)
T COG1541         210 -----LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN-----GLHIWEDHFIFEIVD-PETG  278 (438)
T ss_pred             -----cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc-----CCCcchhhceeeeec-CCcC
Confidence                 389999999999999999999999999999999999998774 3333221     112233466778888 5544


Q ss_pred             CCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCC----Cc-----EEEEecCcceeecCCceee
Q 006197          454 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV-----VKIIDRKKNLIKISQGEYV  524 (657)
Q Consensus       454 ~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~----G~-----l~i~GR~~d~i~~~~G~~v  524 (657)
                       ..+++|+.|||+++.-.       +....     ==-|+|||+..+.++    |+     -.+.||+||++++ .|.+|
T Consensus       279 -e~l~dge~GelV~T~L~-------~~~~P-----lIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-~G~~v  344 (438)
T COG1541         279 -EQLPDGERGELVITTLT-------KEGMP-----LIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-RGVNV  344 (438)
T ss_pred             -ccCCCCCeeEEEEEecc-------ccCcc-----eEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-CCEEe
Confidence             67778899999998722       11000     012899999999763    32     5789999999999 59999


Q ss_pred             ccHHHHHHHhcCcccc-eEEE--EecCCCCeEEEEEecChh
Q 006197          525 ALEYLENVYCVAPIIE-DIWV--YGDSLKSMLVAVVVPCEE  562 (657)
Q Consensus       525 ~~~~iE~~l~~~~~V~-~~~v--v~~~~~~~~~a~v~~~~~  562 (657)
                      +|.+||..|.+++.+. +..+  ......+.+...|+..++
T Consensus       345 fp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~~  385 (438)
T COG1541         345 FPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENE  385 (438)
T ss_pred             CHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecCc
Confidence            9999999999999999 4444  442234577777787753

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.84  E-value=5.8e-19  Score=190.34  Aligned_cols=515  Identities=14%  Similarity=0.119  Sum_probs=336.7

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEeCCc--hhHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS-ALRASGAEPGCRVGIYGANC--PQWV  115 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~-~L~~~G~~~gd~V~i~~~n~--~e~~  115 (657)
                      ..+..+..+++.+-.+++..+|.+..   |.+++ ...+||..+..++.++|+ .|-+.|+.++|+|.++...+  +|++
T Consensus        91 ~a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~  166 (1363)
T KOG3628|consen   91 MALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFL  166 (1363)
T ss_pred             hhhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHh
Confidence            45667777888777889999999998   76666 889999999999999999 55566999999999998877  8999


Q ss_pred             HHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCc
Q 006197          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (657)
Q Consensus       116 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (657)
                      +..++|..+|.+.+|+.+.++.+++...+.....+++++.......+.....+.            .-.....+......
T Consensus       167 isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~------------s~~k~v~~w~t~~~  234 (1363)
T KOG3628|consen  167 ISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV------------SLAKAVAWWKTNDF  234 (1363)
T ss_pred             hhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc------------cHHHHHHhhhcccc
Confidence            999999999999999999999999999999999999999888766553322000            00001111111111


Q ss_pred             c-eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcc---------------cc
Q 006197          196 K-PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---------------QF  259 (657)
Q Consensus       196 ~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~---------------~~  259 (657)
                      + ....         +....+..... ..+|-||++++|.--|++++|. ++.+.+.+.....               ..
T Consensus       235 k~~~~~---------~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~  303 (1363)
T KOG3628|consen  235 KGNYTK---------DKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAH  303 (1363)
T ss_pred             cceeeh---------hhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhh
Confidence            1 1111         11111222223 7899999999999999999998 6666555432211               11


Q ss_pred             cCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHH
Q 006197          260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL  334 (657)
Q Consensus       260 ~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~  334 (657)
                      .......+.++..+.+....|+++ .+.++++|.+....+.    .+..+...+.++|.+++..--..+........   
T Consensus       304 v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~---  380 (1363)
T KOG3628|consen  304 VFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQ---  380 (1363)
T ss_pred             ccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCccccccc---
Confidence            123466778888888888788875 6778999999887775    78889999999999988765433332211000   


Q ss_pred             HhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc----------
Q 006197          335 EELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC----------  404 (657)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~----------  404 (657)
                                                 ..| ...+.+.+-+.-.++++|.+++.-..+..+..+-....+          
T Consensus       381 ---------------------------~~p-~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~  432 (1363)
T KOG3628|consen  381 ---------------------------EDP-KATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVK  432 (1363)
T ss_pred             ---------------------------CCc-ccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcc
Confidence                                       011 111222222233457999999999998887655433332          


Q ss_pred             ------------CCceeeeccCCCCCCccccccCCC-----------------------------ccccCccCcCccC-e
Q 006197          405 ------------CAFLVQGYGLTETCGPTTVCFPDE-----------------------------MCMVGTAGPVSVY-S  442 (657)
Q Consensus       405 ------------~~~v~~~yG~tE~~~~~~~~~~~~-----------------------------~~~~~~~G~~~~~-~  442 (657)
                                  |.....+=+++|.+......+...                             ......+|...|| .
T Consensus       433 ~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~  512 (1363)
T KOG3628|consen  433 VVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDA  512 (1363)
T ss_pred             eeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccce
Confidence                        222222334456555443322200                             0112355665565 3


Q ss_pred             eEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc-------------CCccccCceEEEcCCCcEEEE
Q 006197          443 ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------------DGWFHTGDIGQILPNGVVKII  509 (657)
Q Consensus       443 ~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~-------------~g~~~TGDl~~~~~~G~l~i~  509 (657)
                      .+.+++  +++...+..+++|||||.++++..+||.-+..|...|.             ..|.|||-+|++. +|.++++
T Consensus       513 t~~vv~--~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl  589 (1363)
T KOG3628|consen  513 TLAVVN--PDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVL  589 (1363)
T ss_pred             EEEEeC--CCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEE
Confidence            444554  55556677889999999999999999998888877762             1389999999996 5667777


Q ss_pred             ecCcceeecCCceeeccH----------HHHHHHhcCcccceEEEEecCCCCeEEEEEecChhhHHHHHHHCCCCccHHH
Q 006197          510 DRKKNLIKISQGEYVALE----------YLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLE  579 (657)
Q Consensus       510 GR~~d~i~~~~G~~v~~~----------~iE~~l~~~~~V~~~~vv~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  579 (657)
                      |-++|.+.--.|..++..          .|+.+++..+.|.++.++-   .++.+.+++-++...+         +    
T Consensus       590 ~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~---~E~~~Vv~~esP~a~e---------~----  653 (1363)
T KOG3628|consen  590 GLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE---DEHIVVVVLESPDATE---------E----  653 (1363)
T ss_pred             EechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee---cceEEEEEEeCcchhh---------h----
Confidence            766666653236655433          3566778888999999987   4555555555554311         0    


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          580 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       580 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                        +.-++...+.+.+.+..   .+--|    -+.+++    -+.+|||+-|-+.-...+++|.+
T Consensus       654 --~~~q~~~~v~q~l~~iH---qv~vy----CilivP----~~tLPrt~~~Gi~~~~~k~~F~~  704 (1363)
T KOG3628|consen  654 --NSFQWMSRVFQALDSIH---QVGVY----CILIVP----ANTLPRTPLGGIHNNECKQAFLE  704 (1363)
T ss_pred             --hhhhHHHHHHHHHHHHh---cccce----EEEEec----cccCCCccccccccHHHHHHHHc
Confidence              11223333334443332   22222    122232    36689999888998888888865

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.74  E-value=4.4e-18  Score=173.92  Aligned_cols=114  Identities=15%  Similarity=0.053  Sum_probs=95.7

Q ss_pred             ccCCccccCceEEE-cCCCcEEEEecCcceeecCCc---eeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEec
Q 006197          487 IIDGWFHTGDIGQI-LPNGVVKIIDRKKNLIKISQG---EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  559 (657)
Q Consensus       487 ~~~g~~~TGDl~~~-~~~G~l~i~GR~~d~i~~~~G---~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~  559 (657)
                      +.||||+|||+|++ |++|++++.||.+      +|   ++|+|. ||++|.+||+|.+|+|+|.+++   +.++|+|++
T Consensus       206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~  278 (365)
T PRK09188        206 PSRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEA  278 (365)
T ss_pred             ccCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEE
Confidence            47999999999998 7999999999997      57   799999 9999999999999999997764   479999987


Q ss_pred             ChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197          560 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  639 (657)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~  639 (657)
                      ..+.                  .        .++|+++++ ++||. ++|++|.++++.      |+|++||++|++|++
T Consensus       279 ~~~~------------------~--------~~el~~~l~-~~L~~-kvP~~v~~v~~l------P~t~~GKi~R~~Lr~  324 (365)
T PRK09188        279 ELPA------------------D--------EKSLRARLA-GAKPP-KPPEHIQPVAAL------PRDADGTVRDDILRL  324 (365)
T ss_pred             CCCC------------------C--------HHHHHHHHH-hhchh-cCCcEEEEECCC------CCCCCCCccHHHHHH
Confidence            6321                  1        123444444 78999 999999998764      999999999999998


Q ss_pred             HH
Q 006197          640 YY  641 (657)
Q Consensus       640 ~~  641 (657)
                      ..
T Consensus       325 ~~  326 (365)
T PRK09188        325 IA  326 (365)
T ss_pred             Hh
Confidence            76

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.72  E-value=6.2e-15  Score=154.48  Aligned_cols=259  Identities=15%  Similarity=0.155  Sum_probs=165.8

Q ss_pred             eEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHHhc-CcEEEEec-
Q 006197          222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRR-GASVGYYH-  298 (657)
Q Consensus       222 ~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~l~~-G~~~v~~~-  298 (657)
                      ...+..||||||.|-.+..+..............+  ...++..++++...+.- .+.+..      +.. ...+..++ 
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~--~~~g~~~g~r~a~~~~~~~~ly~~------~~~~~~~~~~~~l  172 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKV--LPDGLFAKHRIAFFLRADNNLYQS------VNNRWISLDFFDL  172 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhh--CccccccCCcEEEEEccChhHHHH------HHhccceeeecCC
Confidence            35677899999999999999887655543332221  11145555555554211 122211      111 11122222 


Q ss_pred             -CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHH
Q 006197          299 -GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKAR  377 (657)
Q Consensus       299 -~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (657)
                       .+.+.+++.|++++|+++.++|+.+..|++.+++...  .                                       
T Consensus       173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l--~---------------------------------------  211 (430)
T TIGR02304       173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL--T---------------------------------------  211 (430)
T ss_pred             CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC--C---------------------------------------
Confidence             3789999999999999999999999999876543210  0                                       


Q ss_pred             cCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEE--EeecCCCCCC
Q 006197          378 LGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR--LEEVPEMGYS  455 (657)
Q Consensus       378 ~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~--iv~~~~~~~~  455 (657)
                        .+++.++++||.++++..+.+++.||++|++.||+|| |.++..|..+.      ...--..+-++  ++| +++   
T Consensus       212 --~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~------lHl~ed~~~vE~~ivD-~~~---  278 (430)
T TIGR02304       212 --IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT------LHLNEDLVHIEKQYLD-EHK---  278 (430)
T ss_pred             --CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC------EEEccccEEEEeeEEC-CCC---
Confidence              1789999999999999999999999999999999999 55544443321      11111222233  666 332   


Q ss_pred             CCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCC----Cc----E-EEEecCcceeec--CCceee
Q 006197          456 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV----V-KIIDRKKNLIKI--SQGEYV  524 (657)
Q Consensus       456 ~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~----G~----l-~i~GR~~d~i~~--~~G~~v  524 (657)
                            .++.+|++-      .+. ...-     =-|+|||++.+.++    |.    + .|.||.+|++++  .+|..+
T Consensus       279 ------~~~~ViT~L------~n~-~~Pl-----IRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v  340 (430)
T TIGR02304       279 ------RFVPIITDF------TRT-TQPI-----VRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQ  340 (430)
T ss_pred             ------ceEEEEecC------CCc-cceE-----EeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeE
Confidence                  134455541      110 0000     01899999888543    32    3 489999999984  456555


Q ss_pred             --ccHHHHHHH-hcCcccceEEEEecCCCCeEEEEEecCh
Q 006197          525 --ALEYLENVY-CVAPIIEDIWVYGDSLKSMLVAVVVPCE  561 (657)
Q Consensus       525 --~~~~iE~~l-~~~~~V~~~~vv~~~~~~~~~a~v~~~~  561 (657)
                        +|..++..+ ...++|.+..++... .+.+...++...
T Consensus       341 ~v~p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~~  379 (430)
T TIGR02304       341 TVFPDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCEL  379 (430)
T ss_pred             EeCHHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeCh
Confidence              888898875 568899999998765 455555555543

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.94  E-value=1.2e-07  Score=97.49  Aligned_cols=241  Identities=17%  Similarity=0.184  Sum_probs=141.8

Q ss_pred             CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhH---HHH--HHHHHHHHhcCc
Q 006197          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH---ILD--RVIEEYFFRRGA  292 (657)
Q Consensus       218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~---~~g--~~~~~~~l~~G~  292 (657)
                      +.+++..++-||||||.|--+.+.+.++..+...+...+..+...-...-.++...|-..   ..+  ....+..+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            345667788999999998777777777776665555444322111111223333333321   111  111222334444


Q ss_pred             EEEEecC---ChHHHHHHHh----hhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchh
Q 006197          293 SVGYYHG---DLNALRDDLM----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPL  365 (657)
Q Consensus       293 ~~v~~~~---~~~~~~~~i~----~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (657)
                      . .+...   +...+...+.    +.++..++++|.++..+...+++.......                          
T Consensus       167 ~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L--------------------------  219 (365)
T PF04443_consen  167 R-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRL--------------------------  219 (365)
T ss_pred             e-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccC--------------------------
Confidence            4 33332   5565555554    567899999998887776655544322110                          


Q ss_pred             HHHHHHHHHHHHcCCcEEEEEEcC------CCCCH-HHHHHHHHhcCC----ceeeeccCCCCCCccccccCCCccccCc
Q 006197          366 ADLLAFRKVKARLGGRLRLVISGG------APLST-EVEEFLRVTCCA----FLVQGYGLTETCGPTTVCFPDEMCMVGT  434 (657)
Q Consensus       366 ~~~~~~~~~~~~~~~~lr~i~~~G------~~l~~-~~~~~~~~~~~~----~v~~~yG~tE~~~~~~~~~~~~~~~~~~  434 (657)
                                   .+..+.+-.||      +.+++ ++.+.+.+.+|+    .+++.|||||.......+...      .
T Consensus       220 -------------~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~------~  280 (365)
T PF04443_consen  220 -------------PKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG------H  280 (365)
T ss_pred             -------------CCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC------c
Confidence                         01344555554      55765 467777887887    699999999987655544321      1


Q ss_pred             cCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCC--------CcE
Q 006197          435 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN--------GVV  506 (657)
Q Consensus       435 ~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~--------G~l  506 (657)
                      .  ++|-. +.+.| + .+..+++.|+.|-|.+-++... .|            -+...|.|+|.+..+        .++
T Consensus       281 ~--~~p~w-V~iRD-p-~tl~~~~~Ge~Gli~vidl~~~-s~------------p~~IlTeDlGvl~~~~~c~cr~g~~f  342 (365)
T PF04443_consen  281 F--HVPPW-VIIRD-P-ETLEPLPPGETGLIQVIDLANT-SY------------PGFILTEDLGVLHGDDDCGCRKGKYF  342 (365)
T ss_pred             c--cCCCe-EEEEC-C-CCCcCCCCCCeeEEEEEccccc-CC------------CcEEEEcceeeecCCCCCCCccCCEE
Confidence            1  22222 56666 4 3567888889999988775432 22            233679999987654        269


Q ss_pred             EEEecCcceeecCCceee
Q 006197          507 KIIDRKKNLIKISQGEYV  524 (657)
Q Consensus       507 ~i~GR~~d~i~~~~G~~v  524 (657)
                      .++||.+..=. + |...
T Consensus       343 ~vlGR~~~ae~-R-GCs~  358 (365)
T PF04443_consen  343 EVLGRADGAEI-R-GCSL  358 (365)
T ss_pred             EEEeCCCCCcc-C-CcHH
Confidence            99999986543 2 5543

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.68  E-value=2.9e-08  Score=77.25  Aligned_cols=68  Identities=22%  Similarity=0.161  Sum_probs=49.6

Q ss_pred             HHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCC
Q 006197          528 YLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLR  604 (657)
Q Consensus       528 ~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  604 (657)
                      |||++|.+||+|.+|+|++.++.   +.++|++++ .                             .+.|+++++ ++||
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~-----------------------------~~~i~~~~~-~~l~   49 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-D-----------------------------EEEIRDHLR-DKLP   49 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-H-----------------------------HHHHHHHHH-HHS-
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-e-----------------------------ecccccchh-hhCC
Confidence            69999999999999999997654   589999998 2                             123444444 5699


Q ss_pred             Cceeee--EEEEecCCCCCCCCccccccc
Q 006197          605 GFEHIK--GVILDPRPFDMERDLVTATLK  631 (657)
Q Consensus       605 ~~~~p~--~i~~~~~~f~~~~~P~t~~GK  631 (657)
                      +|++|+  .++.++..     +|+|++||
T Consensus        50 ~~~~P~~~~~v~~~~~-----lP~t~~GK   73 (73)
T PF13193_consen   50 PYMVPRRIRFVRLDEE-----LPRTPSGK   73 (73)
T ss_dssp             GGGS-SEEEEEEESSS-----EEBETTSS
T ss_pred             CcceeeEEEEccccCc-----CCCCCCCC
Confidence            999994  44444542     49999998

...

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.40  E-value=5.8e-06  Score=90.19  Aligned_cols=312  Identities=21%  Similarity=0.195  Sum_probs=152.2

Q ss_pred             CCCCCceEEEEecCCCCCC-CceeeechHhHHHhh--hhhhhh---cccccCCC-CCCcE-EEEec------------Ch
Q 006197          216 PPQPFNICTIMYTSGTSGD-PKGVVLTHETIATFV--SGVDLF---LDQFEDKM-TVDDV-YLSFL------------PL  275 (657)
Q Consensus       216 ~~~~~~~~~i~~TSGTTG~-pK~v~~th~~l~~~~--~~~~~~---~~~~~~~~-~~~d~-~l~~~------------pl  275 (657)
                      ...++.+.++..||||||. +|-+++|...+....  ......   +....+.. ..+.. ++...            |.
T Consensus        76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~~~~~~~~~~~~~~l~~~~p~~~~~gk~~~l~~~~~~~~~~t~~Gi~~  155 (528)
T PF03321_consen   76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKEFRRLGAIAAWLYYLYRNFPGLLFQGKSLYLSFSFAPPPLRTPGGIPI  155 (528)
T ss_dssp             CTSSS--SEEEEEEEEETTEEEEEEESHHHHHHHHHHHHHHHHH--HHHHSSS--TTSE--EEEE------EE-TTS-EE
T ss_pred             CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHhcCcccccCCcceEEEeecCCCcccCCCCeEE
Confidence            3456778899999999999 999999998876633  111111   11111122 22331 23222            11


Q ss_pred             hHHHHHHHH-HHHHhcCcEEEEec-----CC-----hHHHHHHHh-hhcCeEEEec-hHHHHHHHHHHHHHHHhhchHHH
Q 006197          276 AHILDRVIE-EYFFRRGASVGYYH-----GD-----LNALRDDLM-ELKPTLLAGV-PRVFEKIHEGIKKALEELRPLRR  342 (657)
Q Consensus       276 ~~~~g~~~~-~~~l~~G~~~v~~~-----~~-----~~~~~~~i~-~~~~t~l~~~-p~~~~~l~~~~~~~~~~~~~~~~  342 (657)
                      ....+.... ...++. .....+.     .+     ...++..+. +..++.+.+. |+++..+.+.+++.....     
T Consensus       156 g~~s~~~~~~~~~~~~-~~~~~P~~~~~~~~~~~~~y~~ll~~l~~~~~l~~i~~~~p~~l~~~~~~le~~~~~l-----  229 (528)
T PF03321_consen  156 GSISGIPYRMIPPWFR-SWFTSPSEVIAAIDDWEAKYCHLLCALLQDRDLRMISGWFPSFLLLLFRLLEKHWEEL-----  229 (528)
T ss_dssp             E-HHHHHHT--SCCHH-G-BSS-HHHHT-S-HHHHHHHHHHHHHHCGGGEEEEEEEEHHHHHHHHHHHHHHHHHH-----
T ss_pred             ecccccchhhChHHHc-cCccCCHHHHhcccHHHHHHHHHHHHhhcccCcCEEEeeCHHHHHHHHHHHHHhhhHh-----
Confidence            112222111 001111 0000000     01     122333343 7888888774 567777777776654433     


Q ss_pred             HHHHHHHHHHhhcCCCCCCcch-hHHHHHH-----HHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC-Cc-eeeeccC
Q 006197          343 RIFDALKLAWMNMGYKQREASP-LADLLAF-----RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AF-LVQGYGL  414 (657)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~-v~~~yG~  414 (657)
                        +++...+...    ...++| .++.+..     ..+.+.+-|+|+.+.+.+..-...-...+++.++ .+ +..+|++
T Consensus       230 --~~dI~~G~~~----~~~p~p~rA~~L~~~~~~~~~~~~~lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~A  303 (528)
T PF03321_consen  230 --VEDIRDGTLS----LLRPNPERAAELRAEFEKGRGIPKRLWPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGA  303 (528)
T ss_dssp             --HHHHHHTS------C-S--HHHHHHHHHHHCCSTTHHHHHSTT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEE
T ss_pred             --hHHhcCCccc----cCCCCHHHHHHHHHhhcccCCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccc
Confidence              1111111110    000000 1111110     0111233479997777776666666777777664 33 4478999


Q ss_pred             CCCCCccccccCCCccccCccCcCccC-eeEEEeecCCCC------CC-----CCCCCCCceEEEccCCcccccCCCchh
Q 006197          415 TETCGPTTVCFPDEMCMVGTAGPVSVY-SELRLEEVPEMG------YS-----PLDDPPCGEVCVRGKTLFSGYYKNPDL  482 (657)
Q Consensus       415 tE~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~iv~~~~~~------~~-----~~~~~~~GEl~v~g~~~~~gy~~~~~~  482 (657)
                      ||+-+.+-.. .+.     ..+...++ .-...++.++..      ..     .+..|+.-||+++..   .|.|+    
T Consensus       304 SEg~i~i~~~-~~~-----~~~~l~~~~~ffEFip~~~~~~~~~~~~~~l~~~ele~G~~YelviTt~---~GLyR----  370 (528)
T PF03321_consen  304 SEGFIGIPLD-PED-----PGYVLAPDSGFFEFIPVDEDEQNPSEQPKTLLLHELEVGEEYELVITTN---SGLYR----  370 (528)
T ss_dssp             TTEEEEEES--CCC-------EEE-TTSSEEEEEE-STT-------SSSEEGGG--TT-EEEEEEEST---TS-SS----
T ss_pred             cceEEEEecC-CCC-----CceEeecCCeEEEEEeccCCcccccCCCceecHHHhcCCCeEEEEEecc---cceee----
Confidence            9964332222 111     11111221 123333322211      11     123456778888863   45444    


Q ss_pred             hhccccCCccccCceEEEcC--CC--cEEEEecCcceeecCCceeeccHHHHHHHhcC-----cccceEEEEec---CCC
Q 006197          483 TRESIIDGWFHTGDIGQILP--NG--VVKIIDRKKNLIKISQGEYVALEYLENVYCVA-----PIIEDIWVYGD---SLK  550 (657)
Q Consensus       483 ~~~~~~~g~~~TGDl~~~~~--~G--~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~-----~~V~~~~vv~~---~~~  550 (657)
                               |+.||+.++..  ++  .+.|+||.+.++.+ .|++++-.+|++++.+.     -.+.+..+...   ..+
T Consensus       371 ---------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~  440 (528)
T PF03321_consen  371 ---------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-FGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNP  440 (528)
T ss_dssp             ---------EEECEEEEEEEEETTEEEEEEEEETTEEE-S-SS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSS
T ss_pred             ---------eecCCEEEEeeccCCCcEEEEeccCCceeec-ceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCC
Confidence                     89999999853  34  69999999999998 79999999999999654     35667777765   235


Q ss_pred             CeEEEEEecChh
Q 006197          551 SMLVAVVVPCEE  562 (657)
Q Consensus       551 ~~~~a~v~~~~~  562 (657)
                      ...+.++++...
T Consensus       441 ~~Y~~~~e~~~~  452 (528)
T PF03321_consen  441 PHYVLFWELEGE  452 (528)
T ss_dssp             BEEEEEEEECS-
T ss_pred             CceEEEEEeCCC
Confidence            677777777765

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.87  E-value=0.0014  Score=71.94  Aligned_cols=136  Identities=13%  Similarity=0.118  Sum_probs=79.1

Q ss_pred             HcCCc---EEEEEEcCCCCCHHHHHHHHHhc-CCc-eeeeccCCCCCCccccccCCCccccCccCcC--ccCeeEEEeec
Q 006197          377 RLGGR---LRLVISGGAPLSTEVEEFLRVTC-CAF-LVQGYGLTETCGPTTVCFPDEMCMVGTAGPV--SVYSELRLEEV  449 (657)
Q Consensus       377 ~~~~~---lr~i~~~G~~l~~~~~~~~~~~~-~~~-v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~--~~~~~~~iv~~  449 (657)
                      .+-|+   +..+++||..   .-...++..+ +.+ +...|++||+-+.+-..+....   .+++..  +.+.-.+.+++
T Consensus       299 ~lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~~p---~~~~~~l~~~~~ffEFiP~  372 (597)
T PLN02249        299 KIWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPMCKP---SEVSYTIMPNMAYFEFLPH  372 (597)
T ss_pred             HhCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCCCCC---CCcceEecCCcEEEEeeec
Confidence            33467   5555666644   4445555444 343 5578999995543322111111   111111  12333444432


Q ss_pred             CCC-C-------CC---CCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCC----CcEEEEecCcc
Q 006197          450 PEM-G-------YS---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKN  514 (657)
Q Consensus       450 ~~~-~-------~~---~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~----G~l~i~GR~~d  514 (657)
                      ++. .       .+   .+..|+.-||+|+.   ..|-|+             |+.||..++..-    =.+.|+||.+.
T Consensus       373 ~~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT---~~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~  436 (597)
T PLN02249        373 NHDGDGALDETSLVELADVEVGKEYELVITT---YAGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKNV  436 (597)
T ss_pred             ccCCcccCCCCcEecHHHcCCCCeEEEEEEc---ccceeE-------------eecCCEEEEeeccCCCcEEEEEccCCc
Confidence            211 1       11   12245567888876   334443             899999998532    35899999999


Q ss_pred             eeecCCceeeccHHHHHHHhc
Q 006197          515 LIKISQGEYVALEYLENVYCV  535 (657)
Q Consensus       515 ~i~~~~G~~v~~~~iE~~l~~  535 (657)
                      ++.+ .|+++.-.+++.+|.+
T Consensus       437 ~ls~-~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        437 LLSI-ESDKTDEADLQKAVEN  456 (597)
T ss_pred             ceec-ccccCCHHHHHHHHHH
Confidence            9998 7999999999998865

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.71  E-value=0.0028  Score=69.05  Aligned_cols=166  Identities=15%  Similarity=0.083  Sum_probs=94.6

Q ss_pred             HHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCcee-eeccCCCCCCccccccCCCccccCccCcCccCe-eEEEeecCCC
Q 006197          376 ARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS-ELRLEEVPEM  452 (657)
Q Consensus       376 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~iv~~~~~  452 (657)
                      +.+=++++.|.+....-...-...++... |.+++ .+|++||+-+.+=..+.....  ...+..+|+. -.+.++++++
T Consensus       289 ~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~--~~sy~L~p~~~yFEFip~~~~  366 (606)
T PLN02247        289 KRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPS--DVSYTLLPNMAYFEFLPVDKN  366 (606)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCcc--CCceeecCCcEEEEEeecCCC
Confidence            34448999988776665666666665444 66655 589999965433322211111  1111222222 2223322222


Q ss_pred             CC---------------------------CCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEc----
Q 006197          453 GY---------------------------SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----  501 (657)
Q Consensus       453 ~~---------------------------~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~----  501 (657)
                      ..                           ..+..|+.-||+|+.   +.|.|+             |+.||+.++.    
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt---~~GLYR-------------YrlGDvv~V~GF~n  430 (606)
T PLN02247        367 NGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT---FTGLYR-------------YRVGDILMVTGFYN  430 (606)
T ss_pred             cccccccccccccccccccccccCceecHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecC
Confidence            10                           012345667888875   334333             8899998874    


Q ss_pred             CCCcEEEEecCcceeecCCceeeccHHHHHHHhcCccc---ceEEEE-----ec--CCCCeEEEEEecC
Q 006197          502 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII---EDIWVY-----GD--SLKSMLVAVVVPC  560 (657)
Q Consensus       502 ~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V---~~~~vv-----~~--~~~~~~~a~v~~~  560 (657)
                      ..=.+.|++|.+.+..+ .|+|.+-.++-.++.+.-..   ..+.++     ..  ..+.+-+.++++.
T Consensus       431 ~~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~a~~~l~~~~~~l~d~ts~~d~~~~PghYvlf~El~  498 (606)
T PLN02247        431 NAPQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQAKLLLEPLGFLLTEYTSYADTSSIPGHYVLFWELK  498 (606)
T ss_pred             CCceEEEEecCCceeec-ccccCCHHHHHHHHHHHHHhhcccCeeeeeeecccccCCCCCceEEEEEee
Confidence            23459999999999998 79999988887777542211   122322     11  2345777777764

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.51  E-value=0.006  Score=66.38  Aligned_cols=166  Identities=16%  Similarity=0.098  Sum_probs=94.4

Q ss_pred             HHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCcee-eeccCCCCCCccccccCCCccccCccCcCccCe-eEEEeecCCC
Q 006197          376 ARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS-ELRLEEVPEM  452 (657)
Q Consensus       376 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~iv~~~~~  452 (657)
                      +.+=++++.|.+....-...-...++... |++++ .+|++||+-+.+=..+.....  ...+..+|+. -.+.++++++
T Consensus       300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p~--~~sy~L~p~~~yFEFip~~~~  377 (612)
T PLN02620        300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPS--EVSYTLIPTMAYFEFLPVHRN  377 (612)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCCCCcc--cceeeecCCcEEEEEeeccCc
Confidence            44458999887776665555555555444 66655 679999965443222221111  1111222222 1222221110


Q ss_pred             -C------------------CC---CCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEc----CCCcE
Q 006197          453 -G------------------YS---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----PNGVV  506 (657)
Q Consensus       453 -~------------------~~---~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~----~~G~l  506 (657)
                       +                  .+   .+..|+.-||+|+.   ..|.|+             |+.||+.++.    ..=.+
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt---~~GLyR-------------YrlGDvv~V~Gf~n~~P~~  441 (612)
T PLN02620        378 NGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT---YAGLYR-------------YRVGDVLRVAGFKNKAPQF  441 (612)
T ss_pred             ccccccccccccccccccCccccHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecCCCceE
Confidence             0                  01   12345667888876   334333             8999998874    23459


Q ss_pred             EEEecCcceeecCCceeeccHHHHHHHhcCc--------ccceEEEEec--CCCCeEEEEEecC
Q 006197          507 KIIDRKKNLIKISQGEYVALEYLENVYCVAP--------IIEDIWVYGD--SLKSMLVAVVVPC  560 (657)
Q Consensus       507 ~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~--------~V~~~~vv~~--~~~~~~~a~v~~~  560 (657)
                      .|++|.+-+..+ .|+|.+-.++-.++.+.-        .+.|......  ..+.+-+.++++.
T Consensus       442 ~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyts~~d~~~~PghYvl~~El~  504 (612)
T PLN02620        442 SFICRKNVVLSI-DSDKTDEVELQNAVKNAVNHLVPFDASLTEYTSYADTSTIPGHYVLFWELC  504 (612)
T ss_pred             EEEeecCceeec-ccccCCHHHHHHHHHHHHHhhcccCceeeeEEeccccCCCCCceEEEEEEe
Confidence            999999999998 799999888877774322        1223332222  3356888888763

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=96.43  E-value=0.019  Score=47.06  Aligned_cols=88  Identities=20%  Similarity=0.060  Sum_probs=50.8

Q ss_pred             ceeeccHHHHHHHhcCcccc-eEEEEe--cCCCCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHH
Q 006197          521 GEYVALEYLENVYCVAPIIE-DIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  597 (657)
Q Consensus       521 G~~v~~~~iE~~l~~~~~V~-~~~vv~--~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  597 (657)
                      |.+|+|.+||++|.++|++. +..++-  ....+.+...|+..++..          .+..   ...++.+.+.+.|++.
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~----------~~~~---~~~~l~~~i~~~lk~~   67 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFS----------DDAE---DLEALAERIAERLKER   67 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCC----------TTHH---HHHHHHHHHHHHHHHH
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccC----------cchH---HHHHHHHHHHHHHHhh
Confidence            78999999999999999998 555543  233457777788877531          0000   1234556666666665


Q ss_pred             HHhCCCCCceeeeEEEEecCCCCCCCCccccccccch
Q 006197          598 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKR  634 (657)
Q Consensus       598 ~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r  634 (657)
                      +.   +    .| .|.+++    ..++|++ .||..|
T Consensus        68 lg---v----~~-~V~lv~----~gtLpr~-~~K~~R   91 (96)
T PF14535_consen   68 LG---V----RP-EVELVP----PGTLPRS-EGKAKR   91 (96)
T ss_dssp             HS---S-----E-EEEEE-----TT-S----SSSS-S
T ss_pred             cC---c----eE-EEEEEC----CCCccCC-CCcceE
Confidence            43   2    13 566664    3677997 678766

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=92.68  E-value=0.63  Score=48.76  Aligned_cols=90  Identities=9%  Similarity=-0.009  Sum_probs=75.2

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEE
Q 006197           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV  152 (657)
Q Consensus        75 ~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~--e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  152 (657)
                      .-+|+.++...+..+|..|...|..+||+|.+...-+.  .-+...+|+.++|+..+|+.+. .-+....++.+.++.+|
T Consensus       108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI  186 (438)
T COG1541         108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI  186 (438)
T ss_pred             eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence            46899999999999999999999999999988877322  2267889999999999999883 45667789999999999


Q ss_pred             EEcchhhhhhhcc
Q 006197          153 FVQDKKVKELLSP  165 (657)
Q Consensus       153 i~~~~~~~~~~~~  165 (657)
                      .+.+...-.+.+.
T Consensus       187 ~~tps~~l~lae~  199 (438)
T COG1541         187 AATPSYLLYLAEE  199 (438)
T ss_pred             EEChHHHHHHHHH
Confidence            9999887655443

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=81.23  E-value=12  Score=39.92  Aligned_cols=96  Identities=17%  Similarity=0.139  Sum_probs=70.9

Q ss_pred             CCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHhcCCEEEeccCCCChhHHHHH
Q 006197           68 DGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFI  143 (657)
Q Consensus        68 d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~--e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~  143 (657)
                      .|.+|..+  .+|..++...+..++..+...|+++||++......+.  ......++....|+..+++++.. .+.+...
T Consensus        84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~  162 (422)
T TIGR02155        84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL  162 (422)
T ss_pred             CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence            56666654  3566777666666777778889999999887665543  22334677889999998887654 5778899


Q ss_pred             HhccCceEEEEcchhhhhhhc
Q 006197          144 LDHAEIDFVFVQDKKVKELLS  164 (657)
Q Consensus       144 l~~~~~~~ii~~~~~~~~~~~  164 (657)
                      |+..++.+++........+..
T Consensus       163 i~~~~~t~l~~~Ps~l~~L~~  183 (422)
T TIGR02155       163 IQDFKPDIIMVTPSYMLNLLE  183 (422)
T ss_pred             HHHHCCCEEEEcHHHHHHHHH
Confidence            999999999999987765543

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	657
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		7e-22
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		1e-20
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		3e-20
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		9e-19
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		9e-19
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-18
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-18
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-17
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		4e-16
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		1e-15
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-15
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-14
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-14
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		7e-14
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		7e-14
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-13
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-13
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-13
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-13
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-13
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		6e-13
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-12
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		5e-12
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-11
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-11
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		8e-10
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-09
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		5e-09
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		3e-08
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		2e-07
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		7e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		9e-07
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		3e-06
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		4e-06
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		5e-06
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		1e-05
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		2e-05
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-04
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		8e-04

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 149/566 (26%), Positives = 227/566 (40%), Gaps = 121/566 (21%)
Query: 32  NGFPS--VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG-KFGPYVWKTYKEVYEEVLQ 88
           N FPS  +D +LN  WD    +        + G +  V     G     TY EVY+   +
Sbjct: 7   NAFPSTMMDEELNL-WDFLERAAA------LFGRKEVVSRLHTGEVHRTTYAEVYQRARR 59
Query: 89  IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAE 148
           ++  LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE
Sbjct: 60  LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 119
Query: 149 IDFVFVQDKKV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205
            D V + D  +    E +  + ++ Q   VM       A +  +A +             
Sbjct: 120 -DKVLLFDPNLLPLVEAIRGELKTVQHFVVM----DEKAPEGYLAYEEA----------- 163
Query: 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI------ATFVSGVDLFLDQF 259
           LG+  +   +P +    C + YT+GT+G PKGVV +H  +      A+ V G  L     
Sbjct: 164 LGEEADPVRVPER--AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL----- 216
Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD---LMEL----K 312
               +  DV L  +P+ H+       +     A++      L   R D   L+EL     
Sbjct: 217 ----SEKDVVLPVVPMFHV-----NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG 267
Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFR 372
            T  AGVP V+  + + ++     L+ LRR                              
Sbjct: 268 VTFTAGVPTVWLALADYLESTGHRLKTLRR------------------------------ 297
Query: 373 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF------- 425
                      LV+ G A   + +  F R+     + QGYGLTET       F       
Sbjct: 298 -----------LVVGGSAAPRSLIARFERMGVE--VRQGYGLTETSPVVVQNFVKSHLES 344
Query: 426 ---PDEMCMVGTAG-PVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNP 480
               +++ +    G P+ +   +RL    E G   P D    GEV ++G  +  GYY N 
Sbjct: 345 LSEEEKLTLKAKTGLPIPL---VRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNE 401
Query: 481 DLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 539
           + TR ++  DG+F TGDI      G V+I DR K+LIK S GE+++   LEN     P +
Sbjct: 402 EATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMGHPKV 460
Query: 540 EDIWVYG---DSLKSMLVAVVVPCEE 562
           ++  V        +   +AVVVP  E
Sbjct: 461 KEAAVVAIPHPKWQERPLAVVVPRGE 486

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 138/330 (41%), Gaps = 57/330 (17%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG V+    +AT +   D   D ++   T +DV +  LPL H+   V+ 
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTL---DALADAWQ--WTGEDVLVQGLPLFHVHGLVLG 214
Query: 285 EYF-FRRGASVGYY-----HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                RRG SV +       G    L D       T+L GVP ++ +I E +    E   
Sbjct: 215 ILGPLRRGGSVRHLGRFSTEGAARELNDGA-----TMLFGVPTMYHRIAETLPADPE--- 266
Query: 339 PLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE 398
                                     LA  LA            RL++SG A L     E
Sbjct: 267 --------------------------LAKALAG----------ARLLVSGSAALPVHDHE 290
Query: 399 FLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD 458
            +       +++ YG+TET   T+V   D     GT G      ELRL E      + LD
Sbjct: 291 RIAAATGRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIAALD 349
Query: 459 DPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 517
               GE+ VRG  LF+ Y   PD T  +   DG+F TGD+    P+G V+I+ RK   + 
Sbjct: 350 GESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLI 409
Query: 518 ISQGEYVALEYLENVYCVAPIIEDIWVYGD 547
            S G  +    +EN     P + +  V G+
Sbjct: 410 KSGGYKIGAGEIENALLEHPEVREAAVTGE 439

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 146/331 (44%), Gaps = 69/331 (20%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 228
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 272
Query: 343 RIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV 402
                            R+    A+L A            R  I+GGAP+    E  +++
Sbjct: 273 -----------------RQVPEFAELDA---------PDFRYFITGGAPMP---EALIKI 303
Query: 403 TCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEMGYS 455
                +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E G  
Sbjct: 304 YAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGE- 362
Query: 456 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 515
                  GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I DR K++
Sbjct: 363 -------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDM 415
Query: 516 IKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
           I IS GE V    +E+V    P + ++ V G
Sbjct: 416 I-ISGGENVYPAEIESVIIGVPGVSEVAVIG 445

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 201/497 (40%), Gaps = 78/497 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H T    F  
Sbjct: 177 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH 226
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 227 ARDPI---FGNQIIPDTAILSVVPF---------HHGFGMFTTLGY-------------- 260
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLA 370
               L+ G   V     E      EEL    R + D          YK + A  +  L +
Sbjct: 261 ----LICGFRVVLMYRFE------EEL--FLRSLQD----------YKIQSALLVPTLFS 298
Query: 371 FRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF 425
           F      +       L  + SGGAPLS EV E   +      + QGYGLTET     +  
Sbjct: 299 FFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT- 357
Query: 426 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 485
           P+     G  G V  + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T  
Sbjct: 358 PEGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNA 415
Query: 486 SI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 544
            I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D  V
Sbjct: 416 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGV 474
Query: 545 YG---DSLKSMLVAVVV 558
            G   D    +  AVVV
Sbjct: 475 AGLPDDDAGELPAAVVV 491

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 201/497 (40%), Gaps = 78/497 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 52  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H T    F  
Sbjct: 172 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH 221
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 222 ARDPI---FGNQIIPDTAILSVVPF---------HHGFGMFTTLGY-------------- 255
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLA 370
               L+ G   V     E      EEL    R + D          YK + A  +  L +
Sbjct: 256 ----LICGFRVVLMYRFE------EEL--FLRSLQD----------YKIQSALLVPTLFS 293
Query: 371 FRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF 425
           F      +       L  + SGGAPLS EV E   +      + QGYGLTET     +  
Sbjct: 294 FFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT- 352
Query: 426 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 485
           P+     G  G V  + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T  
Sbjct: 353 PEGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNA 410
Query: 486 SI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 544
            I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D  V
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGV 469
Query: 545 YG---DSLKSMLVAVVV 558
            G   D    +  AVVV
Sbjct: 470 AGLPDDDAGELPAAVVV 486

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 201/497 (40%), Gaps = 78/497 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H  +A  F  
Sbjct: 177 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSH 226
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P  H          F    ++GY              
Sbjct: 227 ARDPI---FGNQIAPDTAILSVVPFHH---------GFGMFTTLGY-------------- 260
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLA 370
               L++G   V     E      EEL    R + D          YK + A  +  L +
Sbjct: 261 ----LISGFRVVLMYRFE------EEL--FLRSLQD----------YKIQSALLVPTLFS 298
Query: 371 FRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF 425
           F      +       L  + SGGAPLS EV E   +      + QGYGLTET     +  
Sbjct: 299 FLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT- 357
Query: 426 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 485
           P      G  G V  + E ++ ++ + G + L     GE+ VRG  + SGY  NP+ T  
Sbjct: 358 PKGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELSVRGPMIMSGYVNNPEATNA 415
Query: 486 SI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 544
            I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D  V
Sbjct: 416 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGCQVAPAELESILLQHPNIFDAGV 474
Query: 545 YG---DSLKSMLVAVVV 558
            G   D    +  AVVV
Sbjct: 475 AGLPDDDAGELPAAVVV 491

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 201/497 (40%), Gaps = 78/497 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 52  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H T    F  
Sbjct: 172 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH 221
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 222 ARDPI---FGNQIIPDTAILSVVPF---------HHGFGMFTTLGY-------------- 255
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLA 370
               L+ G   V     E      EEL    R + D          YK + A  +  L +
Sbjct: 256 ----LICGFRVVLMYRFE------EEL--FLRSLQD----------YKIQSALLVPTLFS 293
Query: 371 FRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF 425
           F      +       L  + SGGAPLS EV E   +      + QGYGLTET     +  
Sbjct: 294 FFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT- 352
Query: 426 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 485
           P+     G  G V  + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T  
Sbjct: 353 PEGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNA 410
Query: 486 SI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 544
            I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D  V
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGV 469
Query: 545 YG---DSLKSMLVAVVV 558
            G   D    +  AVVV
Sbjct: 470 AGLPDDDAGELPAAVVV 486

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 152/342 (44%), Gaps = 68/342 (19%)
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVS------GVDLFLDQFEDKMTVDDVYLS 271
            P ++  + Y+SGT+G PKGV+LTH+ + T V+        +L+          DDV L 
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS-------DDVILC 275
Query: 272 FLPLAHILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
            LP+ HI     I     R GA++      ++N L + +   K T+   VP +   I + 
Sbjct: 276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335
Query: 330 IKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 389
            +    +L                                            +R+V SG 
Sbjct: 336 SETEKYDL------------------------------------------SSIRVVKSGA 353
Query: 390 APLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT---TVCFPDEMCMV--GTAGPVSVYSE 443
           APL  E+E+ +      A L QGYG+TE  GP    ++ F  E   V  G  G V   +E
Sbjct: 354 APLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFAKEPFPVKSGACGTVVRNAE 412
Query: 444 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 502
           +++ + P+ G S   + P GE+C+RG  +  GY  NP  T E+I  DGW HTGDIG I  
Sbjct: 413 MKIVD-PDTGDSLSRNQP-GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD 470
Query: 503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 544
           +  + I+DR K LIK  +G  VA   LE +    P I D+ V
Sbjct: 471 DDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAV 511

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 141/331 (42%), Gaps = 60/331 (18%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G  KG  L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 397
                                         LL   ++     G  RL ISG APL  +  
Sbjct: 256 ------------------------------LLQSPRLTKETTGHXRLFISGSAPLLADTH 285
Query: 398 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS-P 456
                     +++ YG TET   T+  + D   + G  GP       R+ + PE G   P
Sbjct: 286 REWSAKTGHAVLERYGXTETNXNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGKELP 343
Query: 457 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNL 515
             D   G + V+G  +F GY++ P+ T+    D G+F TGD+G+I   G V I+ R K+L
Sbjct: 344 RGD--IGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDL 401
Query: 516 IKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
           + I+ G  V  + +E+     P + +  V G
Sbjct: 402 V-ITGGFNVYPKEIESEIDAXPGVVESAVIG 431

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 68/295 (23%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 214
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 215 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 258
Query: 343 RIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV 402
                            R+    A+L A            R  I+GGAP+    E  +++
Sbjct: 259 -----------------RQVPEFAELDA---------PDFRYFITGGAPMP---EALIKI 289
Query: 403 TCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEMGYS 455
                +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E G  
Sbjct: 290 YAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGE- 348
Query: 456 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 510
                  GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I D
Sbjct: 349 -------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKD 396

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Query: 382 LRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMV-------- 432
           LR++ SGGAPL  E+E+ +R     A L QGYG+TE  GP        MC+         
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE-AGPVLA-----MCLAFAKEPFDI 352
Query: 433 --GTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 488
             G  G V   +E+++ + PE G S P + P  GE+C+RG  +  GY  +P+ T  +I  
Sbjct: 353 KPGACGTVVRNAEMKIVD-PETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 489 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
           +GW HTGDIG I  +  + I+DR K LIK  +G  VA   LE +    P I D  V G
Sbjct: 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVG 466

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 115/475 (24%), Positives = 176/475 (37%), Gaps = 81/475 (17%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+++      ++ S L   G   G RV I   NC + +E + A   +  I +P       
Sbjct: 33  THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP------- 85
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             VN+ L+  EI FV         +   D R      V     SL   +K  A+  G  P
Sbjct: 86  --VNYRLNADEIAFVLGDGAPSVVVAGTDYRDI----VAGVLPSLGGVKKAYAIGDGSGP 139
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
           ++   F  L              +   I++T+   G P+G +++   +    S +   +D
Sbjct: 140 FA--PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL---VD 194
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRG-ASVGYYHGDLNALRDDLMELKPTLL 316
            +  ++T  DV L  LPL H+    +     + G ASV     D      D+   K T++
Sbjct: 195 AW--RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVM 252
Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKA 376
           A                  E  P+   I D              +A+P A L + R V  
Sbjct: 253 A------------------EFAPMLGNILD--------------QAAP-AQLASLRAVT- 278
Query: 377 RLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTA 435
                       G      +E F      A     +G +ET G +T   + D        
Sbjct: 279 ------------GLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR------- 319
Query: 436 GPVSVYSEL--RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH 493
            P S    L  R   V +    PL     GE+ +RG T+F GY+ N   T+ +  +GW H
Sbjct: 320 -PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHH 378
Query: 494 TGDIGQILPNGVVKIIDR--KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
           TGD+G+   +G +    R  +K LIK + GE V    +E      P I D  V G
Sbjct: 379 TGDMGRFDADGYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIG 432

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 102/225 (45%), Gaps = 26/225 (11%)
Query: 385 VISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 443
           + SGGAPLS EV E   R      + QGYGLTET     +  P+     G +G V    +
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFK 372
Query: 444 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILP 502
            ++ ++       L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG    
Sbjct: 373 AKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE 430
Query: 503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPC 560
                I+DR K+LIK  +G  V    LE+V    P I D  V G  D +   L   VV  
Sbjct: 431 EKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 561 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 605
           E                    +  ++ +Y+ S++ NA    +LRG
Sbjct: 490 ESGKN---------------MTEKEVMDYVASQVSNA---KRLRG 516

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 102/225 (45%), Gaps = 26/225 (11%)
Query: 385 VISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 443
           + SGGAPLS EV E   R      + QGYGLTET     +  P+     G +G V    +
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFK 372
Query: 444 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILP 502
            ++ ++       L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG    
Sbjct: 373 AKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE 430
Query: 503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPC 560
                I+DR K+LIK  +G  V    LE+V    P I D  V G  D +   L   VV  
Sbjct: 431 EKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 561 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 605
           E                    +  ++ +Y+ S++ NA    +LRG
Sbjct: 490 ESGKN---------------MTEKEVMDYVASQVSNA---KRLRG 516

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 102/225 (45%), Gaps = 26/225 (11%)
Query: 385 VISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 443
           + SGGAPLS EV E   R      + QGYGLTET     +  P+     G +G V    +
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFK 372
Query: 444 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILP 502
            ++ ++       L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG    
Sbjct: 373 AKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE 430
Query: 503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPC 560
                I+DR K+LIK  +G  V    LE+V    P I D  V G  D +   L   VV  
Sbjct: 431 EKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 561 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 605
           E                    +  ++ +Y+ S++ NA    +LRG
Sbjct: 490 ESGKN---------------MTEKEVMDYVASQVSNA---KRLRG 516

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 127/301 (42%), Gaps = 59/301 (19%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 397
                                         LL   ++     G +RL ISG APL  +  
Sbjct: 256 ------------------------------LLQSPRLTXETTGHMRLFISGSAPLLADTH 285
Query: 398 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS-P 456
                     +++ YG+TET   T+  + D   + G  GP       R+ + PE G   P
Sbjct: 286 REWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGXELP 343
Query: 457 LDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 515
             D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R  +L
Sbjct: 344 RGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDL 401
Query: 516 I 516
           +
Sbjct: 402 V 402

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 127/301 (42%), Gaps = 59/301 (19%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 397
                                         LL   ++     G +RL ISG APL  +  
Sbjct: 256 ------------------------------LLQSPRLTXETTGHMRLFISGSAPLLADTH 285
Query: 398 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS-P 456
                     +++ YG+TET   T+  + D   + G  GP       R+ + PE G   P
Sbjct: 286 REWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGXELP 343
Query: 457 LDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 515
             D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R  +L
Sbjct: 344 RGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDL 401
Query: 516 I 516
           +
Sbjct: 402 V 402

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 127/301 (42%), Gaps = 59/301 (19%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 397
                                         LL   ++     G +RL ISG APL  +  
Sbjct: 256 ------------------------------LLQSPRLTXETTGHMRLFISGSAPLLADTH 285
Query: 398 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS-P 456
                     +++ YG+TET   T+  + D   + G  GP       R+ + PE G   P
Sbjct: 286 REWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGXELP 343
Query: 457 LDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 515
             D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R  +L
Sbjct: 344 RGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDL 401
Query: 516 I 516
           +
Sbjct: 402 V 402

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 120/507 (23%), Positives = 184/507 (36%), Gaps = 97/507 (19%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +          +P+   L  
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++++L           D     LL+      Q   +    T+L  + +    +    P
Sbjct: 551 DRISYML----------ADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDP 600
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            +              I P  P     IMYTSGT+G PKG + TH  I   V  VD    
Sbjct: 601 AT-------------AIDPNDP---AYIMYTSGTTGKPKGNITTHANIQGLVKHVDYM-- 642
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            F D+    D +LS           +  Y F    +  +Y   LNA R  L+      L 
Sbjct: 643 AFSDQ----DTFLS-----------VSNYAFD-AFTFDFYASMLNAAR--LIIADEHTLL 684
Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKAR 377
              R+ + I +     +     L   + DA +  WM                        
Sbjct: 685 DTERLTDLILQENVNVMFATTALFNLLTDAGE-DWMK----------------------- 720
Query: 378 LGGRLRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEMCMV 432
               LR ++ GG   S   V + LR+     L+  YG TE     T       PD +  +
Sbjct: 721 ---GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSL 777
Query: 433 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF 492
               P+S  S   L E  ++   P      GE+C+ G  +  GY    DLT+E  I+  F
Sbjct: 778 PIGKPISNASVYILNEQSQL--QPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPF 833
Query: 493 -------HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 545
                   TGD+ + LP+G ++   R  + +KI +G  + LE +E      P ++D  V 
Sbjct: 834 KPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVV 892
Query: 546 GD-------SLKSMLVAVVVPCEEDTK 565
            D       S+ + LV       ED K
Sbjct: 893 ADRHESGDASINAYLVNRTQLSAEDVK 919

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 88/185 (47%), Gaps = 7/185 (3%)
Query: 382 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 440
           L  + SGGAPL+ EV E   +      + QGYGLTET     +         G  G V  
Sbjct: 343 LHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVP 402
Query: 441 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 499
           +   ++ ++ + G + L     GE+CV+G  +  GY  NP+ T   I  DGW H+GDI  
Sbjct: 403 FFSAKIVDL-DTGKT-LGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAY 460
Query: 500 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVV 557
              +G   I+DR K+LIK  +G  V    LE++    P I D  V G  D     L A V
Sbjct: 461 YDKDGYFFIVDRLKSLIKY-KGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAV 519
Query: 558 VPCEE 562
           V  EE
Sbjct: 520 VVLEE 524

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 179/481 (37%), Gaps = 89/481 (18%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPL----ADLLAF 371
                        G    +EE RP+     DAL+L       +Q + + L      L A 
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQL------VQQEQVTSLFATPTHLDAL 258
Query: 372 RKVKARLGGRLRL-----VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 426
               A  G  L+L     V   GA +   V E +        V GYG TE      +  P
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQP 318
Query: 427 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRE 485
                 GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E
Sbjct: 319 K----TGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE 374
Query: 486 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 545
            + DGW+ T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V 
Sbjct: 375 KLQDGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVI 433
Query: 546 G 546
           G
Sbjct: 434 G 434

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 178/481 (37%), Gaps = 89/481 (18%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPL----ADLLAF 371
                        G    +EE RP+     DAL+L       +Q + + L      L A 
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQL------VQQEQVTSLFATPTHLDAL 258
Query: 372 RKVKARLGGRLRL-----VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 426
               A  G  L+L     V   GA +   V E +        V  YG TE      +  P
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQP 318
Query: 427 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRE 485
                 GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E
Sbjct: 319 K----TGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE 374
Query: 486 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 545
            + DGW+ T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V 
Sbjct: 375 KLQDGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVI 433
Query: 546 G 546
           G
Sbjct: 434 G 434

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 179/481 (37%), Gaps = 89/481 (18%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPL----ADLLAF 371
                        G    +EE RP+     DAL+L       +Q + + L      L A 
Sbjct: 223 -------------GTYVVIEEFRPV-----DALQL------VQQEQVTSLFATPTHLDAL 258
Query: 372 RKVKARLGGRLRL-----VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 426
               A  G  L+L     V   GA +   V E +        V  YG TE      +  P
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQP 318
Query: 427 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRE 485
                 GT      +SE+R+  +       + +   GE+ V    + F GY   P+ T E
Sbjct: 319 K----TGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAE 374
Query: 486 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 545
            + DGW+ T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V 
Sbjct: 375 KLQDGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVI 433
Query: 546 G 546
           G
Sbjct: 434 G 434

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 178/481 (37%), Gaps = 89/481 (18%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPL----ADLLAF 371
                        G    +EE RP+     DAL+L       +Q + + L      L A 
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQL------VQQEQVTSLFATPTHLDAL 258
Query: 372 RKVKARLGGRLRL-----VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 426
               A  G  L+L     V   GA +   V E +        V  YG TE      +  P
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQP 318
Query: 427 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRE 485
                 GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E
Sbjct: 319 K----TGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE 374
Query: 486 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 545
            + DGW+ T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V 
Sbjct: 375 KLQDGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVI 433
Query: 546 G 546
           G
Sbjct: 434 G 434

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 178/481 (37%), Gaps = 89/481 (18%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPL----ADLLAF 371
                        G    +EE RP+     DAL+L       +Q + + L      L A 
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQL------VQQEQVTSLFATPTHLDAL 258
Query: 372 RKVKARLGGRLRL-----VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 426
               A  G  L+L     V   GA +   V E +        V  YG TE      +  P
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQP 318
Query: 427 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRE 485
                 GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E
Sbjct: 319 K----TGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE 374
Query: 486 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 545
            + DGW+ T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V 
Sbjct: 375 KLQDGWYRTSDVAVWTPEGTVRILGRVPDMI-ISGGENIHPSEIERVLGTAPGVTEVVVI 433
Query: 546 G 546
           G
Sbjct: 434 G 434

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 113/479 (23%), Positives = 174/479 (36%), Gaps = 85/479 (17%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV---------P 81
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA---VQTG 194
             +N  L  AE+  +  + +    +++   + A  +     F S +  +       V+ G
Sbjct: 82  ALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAI-----FQSGSGARIIFLGDLVRDG 136
Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            +PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    L
Sbjct: 137 -EPYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----L 183
Query: 255 FLD-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
           F   Q   +    +V L   PL H+               VG++   + AL  D      
Sbjct: 184 FXSTQVGLRHGRHNVVLGLXPLYHV---------------VGFFAVLVAALALD------ 222
Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRK 373
                          G    +EE RP+     DAL+L           A+P         
Sbjct: 223 ---------------GTYVVVEEFRPV-----DALQLVQQEQ-VTSLFATPTHLDALAAA 261
Query: 374 VKARLGGRLRL-----VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 428
                G  L+L     V   GA     V E +        V  YG TE         P  
Sbjct: 262 AAH-AGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNIYGTTEAXNSLYXRQPK- 319
Query: 429 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESI 487
               GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E +
Sbjct: 320 ---TGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL 376
Query: 488 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 546
            DGW+ T D+    P G V+I+ R  + I IS GE +    +E V   AP + ++ V G
Sbjct: 377 QDGWYRTSDVAVWTPEGTVRILGRVDDXI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 381 RLRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPV 438
            L+ ++ GGA LS T +E  L+     +    +G+TETC       P+ +     T G  
Sbjct: 275 NLQKILLGGAKLSATMIETALQYNLPIY--NSFGMTETCSQFLTATPEMLHARPDTVGMP 332
Query: 439 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 498
           S   +++++   + G+        GE+ ++G  + +GY    DLT  +  +G+F+TGDI 
Sbjct: 333 SANVDVKIKNPNKEGH--------GELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIA 383
Query: 499 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 541
           +I   G V I DR+K+LI IS GE +    +E V    P I D
Sbjct: 384 EIDHEGYVMIYDRRKDLI-ISGGENIYPYQIETVAKQFPGISD 425

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 22/196 (11%)
Query: 348 LKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 407
           L + WM+    +R+     DL             L+++  GGA  S E    ++      
Sbjct: 282 LAMVWMDAASSRRD-----DL-----------SSLQVLQVGGAKFSAEAARRVKAVFGCT 325
Query: 408 LVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVC 466
           L Q +G+ E     T     E  +V T G P+S Y E R+ +  +    P +    G + 
Sbjct: 326 LQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE---TGHLL 382
Query: 467 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 525
            RG     GYYK  +    S   DG++ TGDI ++  +G + +  R K+ I    GE VA
Sbjct: 383 TRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN-RGGEKVA 441
Query: 526 LEYLENVYCVAPIIED 541
            E +EN     P + D
Sbjct: 442 AEEVENHLLAHPAVHD 457

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 440
           L+++  GGA  S E    ++      L Q +G  E     T     E  +V T G P S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSP 359
Query: 441 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 499
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 500 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 541
           +  +G + +  R K+ I    GE VA E +EN     P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 108/464 (23%), Positives = 170/464 (36%), Gaps = 117/464 (25%)
Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
           G RV +      ++VEA  AC    L+ VPL    G G  +                K++
Sbjct: 73  GDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRD------------SWSAKLQ 120
Query: 161 ELLSPDCRSAQRL---RVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP 217
            LL+  C+ A  +     +    + T +  E+ V +    ++W + L    V    +  P
Sbjct: 121 GLLA-SCQPAAIITGDEWLPLVNAATHDNPELHVLS----HAWFKALPEADV---ALQRP 172
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P +I  + YTSG++  P+GV++TH  +   +  +         K+   D  +S+LP   
Sbjct: 173 VPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAIS----HDGIKLRPGDRCVSWLP--- 225
Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                    F+     VG+           L+    T L+                   +
Sbjct: 226 ---------FYHDXGLVGF-----------LLTPVATQLS-------------------V 246
Query: 338 RPLRRRIFDALKLAWMNMGYKQRE----ASPLADLLAFRKVKARLGGRL-----RLVISG 388
             LR + F    L W+ +  K R     A P    L  R+V  +    L     R+   G
Sbjct: 247 DYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIG 306
Query: 389 GAPLSTE-----VEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV---------- 432
             P+S E      E F +V          YGL E      V F DE   V          
Sbjct: 307 AEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENA--LAVSFSDEASGVVVNEVDRDIL 364
Query: 433 ---GTAGPVSVYSELRL--------EEVPEMGYS-------PLDDPPCGEVCVRGKTLFS 474
              G A  V+  +E R         + +PE G         P+ +   G +C+ G +L S
Sbjct: 365 EYQGKA--VAPGAETRAVSTFVNCGKALPEHGIEIRNEAGXPVAERVVGHICISGPSLXS 422
Query: 475 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 518
           GY+ +     E    GW  TGD+G +L +G + +  R K+LI I
Sbjct: 423 GYFGDQVSQDEIAATGWLDTGDLGYLL-DGYLYVTGRIKDLIII 465

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 382 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 439
           L+  +  G PL+ EV   FL  T    L++G+G TET   T   FP      G+ G P  
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETV-VTIATFPWMEPKPGSIGKPTP 400
Query: 440 VYS------ELRLEEVPEMG---YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 490
            Y       + RL EV E G    + ++  P G        LF  Y K+P+ T E+  DG
Sbjct: 401 GYKIELMDRDGRLCEVGEEGEIVINTMEGKPVG--------LFVHYGKDPERTEETWHDG 452
Query: 491 WFHTGDIGQILPNGVVKIIDRKKNLIKIS 519
           ++HTGD+  +  +G +  + R  ++IK S
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTS 481

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 93/470 (19%), Positives = 178/470 (37%), Gaps = 77/470 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y    P
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY----P 97
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +LD A             + +  + +    L +       TA++     +    P
Sbjct: 98  PAQEKLLDKA-------------QRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIP 144
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               E + L + +  +    +  +I  + YTSG++  PKGV ++H  +   +  ++    
Sbjct: 145 AIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNL---LDNLNKIFT 201
Query: 258 QFEDKMTVDDVYLSFLPLAH-------ILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
            F      + +  S+LP  H       IL  +         +   +    L+ L+  + +
Sbjct: 202 SFH--XNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLK-HITK 258
Query: 311 LKPTLLAG--------VPRVFEKIHEGIK-----KALEELRPLRRRIFDALKLAWMNMGY 357
            K T+           V R+ E+  EG+       A     P+R    +    A+   G+
Sbjct: 259 YKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGF 318
Query: 358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 417
           ++    P   L               L+++GG P S+    +  +T      Q + +   
Sbjct: 319 RKEAFYPCYGL-----------AEATLLVTGGTPGSS----YKTLTLAKEQFQDHRVHFA 363
Query: 418 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 477
              +    P    +V +  P+    E+++ +   +   P D    GE+ V+  ++  GY+
Sbjct: 364 DDNS----PGSYKLVSSGNPI---QEVKIIDPDTL--IPCDFDQVGEIWVQSNSVAKGYW 414
Query: 478 KNPDLTRESIIDG---------WFHTGDIGQILPNGVVKIIDRKKNLIKI 518
             P+ TR +             +  TGD+G +  N +  +  R K+LI I
Sbjct: 415 NQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELY-VTGRIKDLIII 463

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 23/182 (12%)
Query: 382 LRLVISGGAP----LSTEVEEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAG 436
           L+L+  GGA     L+ +V E L       L Q +G+ E     T +   DE        
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCK----LQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364
Query: 437 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 495
           P+S   E++   + +  Y  + +   G +  RG   F GYY++P+   +    D ++++G
Sbjct: 365 PISSDDEIK---IVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421
Query: 496 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVA 555
           D+ Q  P+G ++++ R K+ I    GE +A E +E +  + P         + + + LVA
Sbjct: 422 DLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHP---------EVMHAALVA 471
Query: 556 VV 557
           +V
Sbjct: 472 IV 473

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 382 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 440
           L+L+  GGA LS  +   +       L Q +G+ E     T        ++ T G P+  
Sbjct: 304 LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCP 363
Query: 441 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 499
             E+    V +   +PL     G +  RG   F GYYK+P     +   +G++ +GD+  
Sbjct: 364 DDEVW---VADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420
Query: 500 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 539
           I P G + +  R+K+ I    GE +A E +EN+    P +
Sbjct: 421 IDPEGYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAV 459

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 119/308 (38%), Gaps = 54/308 (17%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +I   +Y+SG++G PKG V TH   A      +L+       +  +DV  S   L     
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAKPILG-IAENDVVFSAAKL----- 234
Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                 FF  G   G            LM  +PT  A   R+ E                
Sbjct: 235 ------FFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEH--------------- 273
Query: 341 RRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFL 400
           R  +F  +   + NM             L    + AR    +R+  S G  L  E+ E  
Sbjct: 274 RPTVFYGVPTLYANM-------------LVSPNLPARADVAIRICTSAGEALPREIGERF 320
Query: 401 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--GTAG-PVSVYSELRLEEVPEMGYSPL 457
                  ++ G G TE      +   +    V  GT G PV  Y E+ L +  E G++ +
Sbjct: 321 TAHFGCEILDGIGSTEML---HIFLSNRAGAVEYGTTGRPVPGY-EIELRD--EAGHA-V 373
Query: 458 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 517
            D   G++ ++G +    Y+ N + +R + +  W  +GD    LPNG      R  +++K
Sbjct: 374 PDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLK 433
Query: 518 ISQGEYVA 525
           +S G+YV+
Sbjct: 434 VS-GQYVS 440

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 409 VQGYGLTET--CGPTTVCFPDEMCM-VGTAGPVS------VYSELRLEEVPEMGYSPLDD 459
           +  YG TET  C  T V   + +   V    P+       V   L+L+ V E        
Sbjct: 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE-------- 371
Query: 460 PPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNGVVKIIDRK 512
              GE+C+ G+ L  GY+K P+LT +  +D  F        TGD  + L +G ++ + R 
Sbjct: 372 --AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 429
Query: 513 KNLIKISQGEYVALEYLENV 532
            N +KI +G  V LE +E++
Sbjct: 430 DNQVKI-RGHRVELEEVESI 448

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 382 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 440
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 441 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 491
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 492 FHTGDIGQILPNGVVKIIDRKKNLIKI 518
           + TGD+ +   +GV++ + R  + +KI
Sbjct: 448 YRTGDLARRRADGVLEYVGRADDQVKI 474

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 410 QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR---LEEVPEMGYSPLDDPPCGEVC 466
           Q +G TE C   T   P  +    T G      EL+   LE+  E+G         GE+ 
Sbjct: 333 QIWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGE-----SGEIV 387
Query: 467 VRGKTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 521
           +RG  +F GY+K     +E          +F TGD+G I   G +   DR K +IK  +G
Sbjct: 388 IRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KG 446
Query: 522 EYVALEYLENVYCVAPIIEDIWVYG 546
             +A   LE +      + D+ V G
Sbjct: 447 YTIAPFELEALLXKHEAVXDVAVIG 471

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 382 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 440
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 441 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 491
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 492 FHTGDIGQILPNGVVKIIDR 511
           + TGD+ +   +GV++ + R
Sbjct: 448 YRTGDLARRRADGVLEYVGR 467

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	657
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	3e-70
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-67
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	3e-66
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	3e-65
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-64
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-61
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	2e-60
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-59
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-58
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	4e-58
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	6e-58
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-55
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	5e-55
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	7e-54
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-51
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	5e-46
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	4e-29
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	4e-27
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	5e-26
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	4e-18
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	4e-15
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-10
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	9e-11
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-09
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	1e-08
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	6e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	8e-08
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-07
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	5e-07
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-04

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  236 bits (604), Expect = 3e-70
 Identities = 106/504 (21%), Positives = 169/504 (33%), Gaps = 97/504 (19%)

Query: 38  DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG 97
           D  +     +        P                     TY ++     +    L A G
Sbjct: 12  DDKMKNIGWMLRQRATVSPR------LQAYVEPSTDVRM-TYAQMNALANRCADVLTALG 64

Query: 98  AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157
              G RV +   N  ++         L  + VP+   L    V+FIL  +    V     
Sbjct: 65  IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA- 123

Query: 158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP 217
                          +R                V   I   S  E L     +E   +  
Sbjct: 124 ---PSAP----VIDAIR--------AQADPPGTVTDWIGADSLAERLRSAAADE-PAVEC 167

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
              +   IMYTSGT+G PKGVV THE++ +  S     +D     +   D  L  LP+ H
Sbjct: 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID-----VRYRDRLLLPLPMFH 222

Query: 278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +   RG ++      D   +   ++E +  +   VP +              
Sbjct: 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL------------- 269

Query: 337 LRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 396
                            N             +    +         R  I+GGAP+   +
Sbjct: 270 -----------------NF------------MRQVPEFAELDAPDFRYFITGGAPMPEAL 300

Query: 397 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL-----EEVP 450
            +          VQGY LTE+CG  T+   ++ +   G+AG  ++++++ +         
Sbjct: 301 IKIYAAKNIEV-VQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIRE 359

Query: 451 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 510
                       GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I D
Sbjct: 360 ---------HGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKD 410

Query: 511 RKKNLIKISQGEYVALEYLENVYC 534
           R K++I IS G        ENVY 
Sbjct: 411 RLKDMI-ISGG--------ENVYP 425

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  228 bits (584), Expect = 1e-67
 Identities = 95/499 (19%), Positives = 147/499 (29%), Gaps = 100/499 (20%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           ++   +  + P +  L                T+ E+   V  + + L A G  P  RV 
Sbjct: 6   EMLRRAATRAPDHCAL-----AVP-ARGLRL-THAELRARVEAVAARLHADGLRPQQRVA 58

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   N    V A+ A + L  +            +N  L  AE+  +             
Sbjct: 59  VVAPNSADVVIAILALHRLGAVPAL---------LNPRLKSAELAELIK----------- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ----PFN 221
                      V               +G +     + +  G+              P  
Sbjct: 99  RGEM----TAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQ 154

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--L 279
              I YTSGT+G PK  ++      + V  +     Q   +    +V L  +PL H+   
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFM---STQVGLRHGRHNVVLGLMPLYHVVGF 211

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
             V+       G  V             + + + T L   P                   
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHL---------------- 255

Query: 340 LRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EE 398
                                    LA   A      +L   LR V   GA +   V E 
Sbjct: 256 ------------DA-----------LAAAAAHAGSSLKL-DSLRHVTFAGATMPDAVLET 291

Query: 399 FLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD 458
             +       V  YG TE      +  P      GT      +SE+R+  V   G     
Sbjct: 292 VHQHLPGEK-VNIYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRI--VRIGGGVDEI 344

Query: 459 DPP--CGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 515
                 GE+ V    + F GY   P  T E + DGW+ T D+    P G V+I+ R  ++
Sbjct: 345 VANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDM 404

Query: 516 IKISQGEYVALEYLENVYC 534
           I IS G        EN++ 
Sbjct: 405 I-ISGG--------ENIHP 414

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  225 bits (575), Expect = 3e-66
 Identities = 92/494 (18%), Positives = 161/494 (32%), Gaps = 93/494 (18%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
                  Q+            +    G   + TY+ +Y E   +   L    A    RVG
Sbjct: 5   FWLYKQAQQNGH------HIAI--TDGQESY-TYQNLYCEASLLAKRL---KAYQQSRVG 52

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +Y  N  Q +  + AC   ++    +   L P  +   +   ++  +F        L   
Sbjct: 53  LYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL----PLELR 108

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
             +      +      +T               S +  +     + +        +I +I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           M+TSGT+G  K V  T         G    L         D  +LS LP+ HI    +  
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLG-----FDRDTNWLSVLPIYHISGLSVLL 223

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                G +V      +   +   +   + T ++ VP+    + +                
Sbjct: 224 RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQ---------------- 267

Query: 345 FDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVT 403
                               L +              L+ ++ GGA LS  + E  L+  
Sbjct: 268 ------------------QGLHEPY-----------NLQKILLGGAKLSATMIETALQYN 298

Query: 404 CCAFLVQGYGLTETCGPTTVCFPDEMCM-VGTAGPVSVYSELRL--EEVPEMGYSPLDDP 460
               +   +G+TETC       P+ +     T G  S   ++++        G       
Sbjct: 299 LP--IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGHG------- 349

Query: 461 PCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ 520
              E+ ++G  + +GY    D    +  +G+F+TGDI +I   G V I DR+K+LI IS 
Sbjct: 350 ---ELMIKGANVMNGYLYPTD-LTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI-ISG 404

Query: 521 GEYVALEYLENVYC 534
           G        EN+Y 
Sbjct: 405 G--------ENIYP 410

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  222 bits (569), Expect = 3e-65
 Identities = 93/499 (18%), Positives = 164/499 (32%), Gaps = 106/499 (21%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D++  +   +P       R             T+++      ++ S L   G   G RV 
Sbjct: 10  DVYRRNAALFPD------RTAF--MVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVA 60

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           I   NC + +E + A   +  I +P+   L    + F+L       V       +++++ 
Sbjct: 61  ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVA-GTDYRDIVAG 119

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
              S   ++                   G     +  F  L              +   I
Sbjct: 120 VLPSLGGVKKAYA--------------IGDGSGPFAPFKDLASDTPFSAPEFGAADGFVI 165

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           ++T+   G P+G +++   +    S +          +T  DV L  LPL H+    +  
Sbjct: 166 IHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-----LTEADVNLGMLPLFHVTGLGLML 220

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
              + G +       D      D+   K T++A    +   I       L++  P     
Sbjct: 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI-------LDQAAP----- 268

Query: 345 FDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC 404
                                A L             LR V     P +  +E F     
Sbjct: 269 ---------------------AQL-----------ASLRAVTGLDTPET--IERFEATCP 294

Query: 405 CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-----EEVP--EMGYSPL 457
            A     +G +ET G +T     +     +AG    +  + +       +P  E+G    
Sbjct: 295 NATFWATFGQSETSGLSTFAPYRDR--PKSAGRPLFWRTVAVVDAEDRPLPPGEVG---- 348

Query: 458 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR--KKNL 515
                 E+ +RG T+F GY+ N   T+ +  +GW HTGD+G+   +G +    R  +K L
Sbjct: 349 ------EIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKEL 402

Query: 516 IKISQGEYVALEYLENVYC 534
           I  + G        ENVY 
Sbjct: 403 I-KTGG--------ENVYP 412

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  220 bits (562), Expect = 2e-64
 Identities = 110/469 (23%), Positives = 172/469 (36%), Gaps = 101/469 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+     ++ + L A G + G RV        + +    A      + +PL      
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL------ 83

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N      E+D+              D       +++VC  S       +A + G   
Sbjct: 84  ---NTAYTLHELDYFIT-----------DAEP----KIVVCDPSKRDGIAAIAAKVGATV 125

Query: 198 Y--------SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
                    S  +            +     ++  I+YTSGT+G  KG +L+H+ +A+  
Sbjct: 126 ETLGPDGRGSLTDAAAGAS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS 184

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDD 307
             +  +        T DDV +  LP+ H   L        F RG+ +     D + +  D
Sbjct: 185 LTLVDYWR-----FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL-D 238

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLAD 367
           LM  + T+L GVP  +                                            
Sbjct: 239 LMA-RATVLMGVPTFY------------------------------------------TR 255

Query: 368 LLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFP 426
           LL   ++     G +RL ISG APL  +   E+   T  A L + YG+TET    T    
Sbjct: 256 LLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVL-ERYGMTETN-MNTSNPY 313

Query: 427 DEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 485
           D   + G  GP       R+    PE G   L     G + V+G  +F GY++ P+ T+ 
Sbjct: 314 DGDRVPGAVGPALPGVSARV--TDPETG-KELPRGDIGMIEVKGPNVFKGYWRMPEKTKS 370

Query: 486 SII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 533
               DG+F TGD+G+I   G V I+ R K+L+ I+ G         NVY
Sbjct: 371 EFRDDGFFITGDLGKIDERGYVHILGRGKDLV-ITGG--------FNVY 410

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  213 bits (546), Expect = 1e-61
 Identities = 93/515 (18%), Positives = 172/515 (33%), Gaps = 107/515 (20%)

Query: 33  GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWK----TYKEVYEEVL 87
           GFPS+     +  D    + +K+        +   +  +            + E+ E   
Sbjct: 10  GFPSLYYPKISLADRIDAAAEKFGE------KTAIISAEPKFPSEFPESMNFLEICEVTK 63

Query: 88  QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
           ++ S +   G   G  VG+   N   +V  + A   ++   VP         +N +    
Sbjct: 64  KLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVP---------INPMYKSF 114

Query: 148 EIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK--------PYS 199
           E++ +             D  +      +V  + L    K +  +TG++          S
Sbjct: 115 ELEHILN-----------DSEA----TTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNS 159

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
             E +  G  +   +      ++  I YT GT+G PKGV+LTH  +A     + +     
Sbjct: 160 LSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG-- 217

Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAG 318
              ++  D  +  +P+ H  +  +       G   V     +   L +++ + K T    
Sbjct: 218 ---LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWA 274

Query: 319 VPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARL 378
           VP                                +N                +       
Sbjct: 275 VPPAL--------------------------NVLVNT------LESSNKTYDWS------ 296

Query: 379 GGRLRLVISGGAPLSTEVEE-FLRVTCC------AFLVQGYGLTETCGPTTVCFPDEMCM 431
              L++  +G  P++  + E  L++             Q +G+TE C   T   P  +  
Sbjct: 297 --YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDK 354

Query: 432 VGTAGPVSVYSELRLEEV-PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 488
             T G      EL++  +  E G    + +   GE+ +RG  +F GY+K     +E    
Sbjct: 355 STTQGVPMSDIELKV--ISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKENQECWWY 410

Query: 489 ----DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 519
                 +F TGD+G I   G +   DR K +IK  
Sbjct: 411 DEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  210 bits (537), Expect = 2e-60
 Identities = 113/501 (22%), Positives = 179/501 (35%), Gaps = 87/501 (17%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  +A       +++Y     +    F +   G     +Y E  E+   +  AL
Sbjct: 15  KPFYPIEEGSAGTQLRKYMERYAKLGAI---AFTNAVTGVDY--SYAEYLEKSCCLGKAL 69

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   NC ++   + A   + +   P  +      +   L  ++   VF
Sbjct: 70  QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
                  KV  +     ++   ++ +V   S    +              D F+      
Sbjct: 130 SSKKGLDKVITV----QKTVTTIKTIVILDSKVDYR---------GYQCLDTFIKRNTPP 176

Query: 211 EMEI--LPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
             +         +    +  IM +SG++G PKGV LTHE I T  S     +  + ++++
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVS 234

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
                L+ +P  H         +   G  V      D       L + K T +  VP +F
Sbjct: 235 PGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF 294

Query: 324 EKI--HEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 381
             +   E + K                        Y         DL             
Sbjct: 295 AILNKSELLNK------------------------Y---------DL-----------SN 310

Query: 382 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 440
           L  + SGGAPLS EV E   R      + QGYGLTET     +  P+     G +G V  
Sbjct: 311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT-SAIIITPEGDDKPGASGKVVP 369

Query: 441 YSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 496
             + ++  +  +     L   P   GEVCV+G  L  GY  NP+ T+E I  +GW HTGD
Sbjct: 370 LFKAKV--IDLDTK-KSL--GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGD 424

Query: 497 IGQILPNGVVKIIDRKKNLIK 517
           IG         I+DR K+LIK
Sbjct: 425 IGYYDEEKHFFIVDRLKSLIK 445

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  206 bits (527), Expect = 2e-59
 Identities = 100/462 (21%), Positives = 147/462 (31%), Gaps = 104/462 (22%)

Query: 83  YEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNF 142
           Y E+     A  A       RV ++     +   A+ A     +  VPL    G   +  
Sbjct: 51  YAELAAAAGAT-AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAH 109

Query: 143 ILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
           IL  +    V            PD      L  +         +  +             
Sbjct: 110 ILSDSAPSLVLA---------PPDAELPPALGALERVDVDVRARGAVPED---------- 150

Query: 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
                             +   ++YTSGT+G PKG V+    +AT +  +          
Sbjct: 151 -------------GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ----- 192

Query: 263 MTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
            T +DV +  LPL H+  L   I     R G+                +    T+L GVP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAA-RELNDGATMLFGVP 251

Query: 321 RVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGG 380
            ++ +                                       +A+ L      A+   
Sbjct: 252 TMYHR---------------------------------------IAETLPADPELAKALA 272

Query: 381 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 439
             RL++SG A L     E     T    + + YG+TET    T    D     GT G   
Sbjct: 273 GARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMTETL-MNTSVRADGEPRAGTVGVPL 330

Query: 440 VYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFH 493
              ELRL       +       LD    GE+ VRG  LF+ Y   PD T  +   DG+F 
Sbjct: 331 PGVELRLVEEDGTPIA-----ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFR 385

Query: 494 TGDIGQILPNGVVKIIDRK-KNLIKISQGEYVALEYLENVYC 534
           TGD+    P+G V+I+ RK  +LI  S G          +  
Sbjct: 386 TGDMAVRDPDGYVRIVGRKATDLI-KSGG--------YKIGA 418

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  205 bits (525), Expect = 1e-58
 Identities = 117/499 (23%), Positives = 182/499 (36%), Gaps = 82/499 (16%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  TA +    ++++Y      G   F D      +  TY E +E  +++  A+
Sbjct: 12  APFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYFEMSVRLAEAM 67

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   N  Q+   +     + +   P  D      +   ++ ++   VF
Sbjct: 68  KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL--HLGK 208
           V     +K+  +     +    ++ ++   S T  Q            S   F+  HL  
Sbjct: 128 VSKKGLQKILNVQ----KKLPIIQKIIIMDSKTDYQG---------FQSMYTFVTSHLPP 174

Query: 209 VNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
                   P+ F+    I  IM +SG++G PKGV L H T     S     +  F +++ 
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQII 232

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
            D   LS +P  H         +   G  V   +  +       L + K      VP +F
Sbjct: 233 PDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292

Query: 324 EKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 383
                                       +          S L D       K  L   L 
Sbjct: 293 --------------------------SFFAK--------STLID-------KYDLS-NLH 310

Query: 384 LVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS 442
            + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V  + 
Sbjct: 311 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT-SAILITPEGDDKPGAVGKVVPFF 369

Query: 443 ELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIG 498
           E ++  V  + G   L       GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 370 EAKV--VDLDTG-KTL--GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424

Query: 499 QILPNGVVKIIDRKKNLIK 517
               +    I+DR K+LIK
Sbjct: 425 YWDEDEHFFIVDRLKSLIK 443

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  203 bits (520), Expect = 4e-58
 Identities = 95/460 (20%), Positives = 163/460 (35%), Gaps = 81/460 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  SALR  G  P  R+ +   +      A        ++ V     L P
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L H+    V      + + ++    SA+     +  +     +  +A       
Sbjct: 110 ADYVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAP------ 162

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
             ++E +        +       +I   +Y+SG++G PKG V TH   A      +L+  
Sbjct: 163 -LFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAK 217

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPT 314
                +  +DV  S   L           F    GA+          +A+   L+E +PT
Sbjct: 218 PILG-IAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKV 374
           +  GVP ++                                          A++L    +
Sbjct: 277 VFYGVPTLY------------------------------------------ANMLVSPNL 294

Query: 375 KARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG 433
            AR    +R+  S G  L  E+ E F     C  ++ G G TE      +         G
Sbjct: 295 PARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTEM-LHIFLSNRAGAVEYG 352

Query: 434 TAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 485
           T G PV  Y E+ L       VP  E+G          ++ ++G +    Y+ N + +R 
Sbjct: 353 TTGRPVPGY-EIELRDEAGHAVPDGEVG----------DLYIKGPSAAVMYWNNREKSRA 401

Query: 486 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 525
           + +  W  +GD    LPNG      R  +++K+S G+YV+
Sbjct: 402 TFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVS 440

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  205 bits (523), Expect = 6e-58
 Identities = 89/514 (17%), Positives = 162/514 (31%), Gaps = 125/514 (24%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ +    +  +LR  G +PG    +   N  +      A   L +  V        
Sbjct: 52  SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL------- 104

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ---KEMAVQTG 194
               F    +E++  +    +   L++    +       +   +   E    + + +   
Sbjct: 105 --ALFSHQRSELNA-YASQIEPALLIADRQHALFSGDDFL--NTFVTEHSSIRVVQLLND 159

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGV 252
              ++  + ++     +    P     +     + GT+G PK +  TH         S  
Sbjct: 160 SGEHNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF----------FRRGASVGYYHGDLN 302
                    + T    YL  +P AH         +          F  G +V     D +
Sbjct: 219 IC-------QFTQQTRYLCAIPAAHN--------YAMSSPGSLGVFLAGGTV-VLAADPS 262

Query: 303 ALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK 358
           A       L    +  + A VP                               W+    +
Sbjct: 263 A--TLCFPLIEKHQVNVTALVP--------------------------PAVSLWLQALIE 294

Query: 359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET 417
               + LA               L+L+  GGA LS  +         C  L Q +G+ E 
Sbjct: 295 GESRAQLA--------------SLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGMAEG 339

Query: 418 CGPTTVCFPDEMCMVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRG 469
               T        ++ T G P+    E+ +       +P  E+G           +  RG
Sbjct: 340 LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVG----------RLMTRG 389

Query: 470 KTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEY 528
              F GYYK+P     +   +G++ +GD+  I P G + +  R+K+ I    GE +A E 
Sbjct: 390 PYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI-NRGGEKIAAEE 448

Query: 529 LENVYCVAPIIEDIWVYGDSLKSMLVAVV-VPCE 561
           +EN+    P +               A+V +  E
Sbjct: 449 IENLLLRHPAVIY------------AALVSMEDE 470

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  196 bits (500), Expect = 2e-55
 Identities = 112/498 (22%), Positives = 189/498 (37%), Gaps = 86/498 (17%)

Query: 34  FPSVD--SDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWKTYKEVYEEVLQIV 90
            P +    +L         ++  +        +P  ++G  G     TY +V     ++ 
Sbjct: 13  LPDIYIPKNLPL-HSYVLENLSNHSS------KPCLINGANGDVY--TYADVELTARRVA 63

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
           S L   G + G  + ++  + P++V A    +    I         P  +      +   
Sbjct: 64  SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            +  Q    +++   D      ++V +C  S                  + E     + N
Sbjct: 124 LLITQACYYEKVK--DFARESDVKV-MCVDSAPDGCL-----------HFSELTQADE-N 168

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E   +   P ++  + Y+SGT+G PKGV+LTH+ + T V+      +        +DV L
Sbjct: 169 EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP-NLYFHSEDVIL 227

Query: 271 SFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             LP+ HI  L+ ++          +     ++ +L   + + K ++   VP V      
Sbjct: 228 CVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVM----- 282

Query: 329 GIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 388
                                ++           SP  D       K  L   LR++ SG
Sbjct: 283 ---------------------MSIAK--------SPDLD-------KHDLS-SLRMIKSG 305

Query: 389 GAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSE 443
           GAPL  E+ +        A L QGYG+TE      +C            G  G V   +E
Sbjct: 306 GAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAE 365

Query: 444 LRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 499
           +++  V PE G + L  P    GE+C+RG  +  GY  +P+ T  +I  +GW HTGDIG 
Sbjct: 366 MKI--VDPETG-ASL--PRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGY 420

Query: 500 ILPNGVVKIIDRKKNLIK 517
           I  +  + I+DR K LIK
Sbjct: 421 IDDDDELFIVDRLKELIK 438

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  195 bits (498), Expect = 5e-55
 Identities = 80/549 (14%), Positives = 164/549 (29%), Gaps = 134/549 (24%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
               I ++ VQ +P          +    G     +Y E+      + + L   G   G 
Sbjct: 31  PLTRILTVGVQSHPH------SLAI--ICGERQL-SYIELDRLSTNLATRLAEKGLGKGD 81

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
              +   N  ++     A     ++ +            +     E++  F++  + K L
Sbjct: 82  TALVQLPNVAEFYIVFFALLKAGVVVLN---------ALYSHRQYELNA-FIKQIQPKLL 131

Query: 163 LSPDCRSAQRLRVMV--CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
           +             +        + +  + +      +   +++       ++       
Sbjct: 132 IGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPAD 191

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            +     + G++G PK +  TH         S            +  +   L  LP  H 
Sbjct: 192 EVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-------GLNSNTRLLCALPAPHN 244

Query: 279 LDRVIEEYF----------FRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVFE 324
                   F             G  V     +      +   +    +  + + VP    
Sbjct: 245 --------FMLSSPGALGVLHAGGCV-VMAPNPEP--LNCFSIIQRHQVNMASLVPSAV- 292

Query: 325 KIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 384
                                    + W+     +        +             L+L
Sbjct: 293 -------------------------IMWLE----KAAQYK-DQI-----------QSLKL 311

Query: 385 VISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG-PVSVY 441
           +  GGA     +  +   V  C  L Q +G+ E          D    +  T G P+S  
Sbjct: 312 LQVGGASFPESLARQVPEVLNCK-LQQVFGMAEGL-VNYTRLDDSDEQIFTTQGRPISSD 369

Query: 442 SELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFH 493
            E+++      EVP  E+G           +  RG   F GYY++P+   +    D +++
Sbjct: 370 DEIKIVDEQYREVPEGEIG----------MLATRGPYTFCGYYQSPEHNSQVFDEDNYYY 419

Query: 494 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSML 553
           +GD+ Q  P+G ++++ R K+ I    GE +A E +E +  + P +              
Sbjct: 420 SGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIASEEIEKLILLHPEVMH------------ 466

Query: 554 VAVV-VPCE 561
            A+V +  E
Sbjct: 467 AALVAIVDE 475

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  192 bits (490), Expect = 7e-54
 Identities = 110/550 (20%), Positives = 185/550 (33%), Gaps = 140/550 (25%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAI--TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V                 +EI + F +  +    
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVF---------ALPSHRSSEITY-FCEFAEAAAY 126

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPF 220
           + PD  S    R +     + ++     ++  I     +EFL L  ++   +++   +  
Sbjct: 127 IIPDAYSGFDYRSLA--RQVQSKLP--TLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           ++  +  + G++G  K +  TH+        S            +    VYL+ LP+AH 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALPMAHN 235

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALR-------------DDLMEL----KPTLLAGVPR 321
                   +     S     G L  L              DD   L    K T+ A VP 
Sbjct: 236 --------Y---PLSSP---GVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPP 281

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 381
           +                           + WM+          L+ L             
Sbjct: 282 LA--------------------------MVWMD--AASSRRDDLSSL------------- 300

Query: 382 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG-PV 438
            +++  GGA  S E       V  C  L Q +G+ E          D    +V T G P+
Sbjct: 301 -QVLQVGGAKFSAEAARRVKAVFGCT-LQQVFGMAEGL-VNYTRLDDPEEIIVNTQGKPM 357

Query: 439 SVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWF 492
           S Y E R+      +V   G +       G +  RG     GYYK  +    S   DG++
Sbjct: 358 SPYDESRVWDDHDRDVKP-GET-------GHLLTRGPYTIRGYYKAEEHNAASFTEDGFY 409

Query: 493 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSM 552
            TGDI ++  +G + +  R K+ I    GE VA E +EN     P + D           
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENHLLAHPAVHD----------- 457

Query: 553 LVAVV-VPCE 561
             A+V +P +
Sbjct: 458 -AAMVSMPDQ 466

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  191 bits (487), Expect = 1e-51
 Identities = 114/504 (22%), Positives = 189/504 (37%), Gaps = 90/504 (17%)

Query: 34  FPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSA 92
            P +   +  +  D    ++ ++     L     ++G  G     TY +V+    QI + 
Sbjct: 52  LPDIYIPNHLSLHDYIFQNISEFATKPCL-----INGPTGHVY--TYSDVHVISRQIAAN 104

Query: 93  LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152
               G      V +   NCP++V +  A +              P  +      +    +
Sbjct: 105 FHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLI 164

Query: 153 FVQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 209
             +     K+K L     ++   + ++    + +    E  +        + E       
Sbjct: 165 ITEARYVDKIKPL-----QNDDGVVIVCIDDNESVPIPEGCL-------RFTELTQSTT- 211

Query: 210 NEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV- 265
              E++     +   +  + Y+SGT+G PKGV+LTH+ +   V+ V   +D     +   
Sbjct: 212 EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFH 268

Query: 266 -DDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRV 322
            DDV L  LP+ HI  L+ ++        A +     ++N L + +   K T+   VP  
Sbjct: 269 SDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-- 326

Query: 323 FEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 382
                           P+       L +A           S   +       K  L   +
Sbjct: 327 ----------------PI------VLAIA----------KSSETE-------KYDLS-SI 346

Query: 383 RLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGP 437
           R+V SG APL  E+ +        A L QGYG+TE      +             G  G 
Sbjct: 347 RVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT 406

Query: 438 VSVYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFH 493
           V   +E+++  V P+ G   L       GE+C+RG  +  GY  NP  T E+I  DGW H
Sbjct: 407 VVRNAEMKI--VDPDTG-DSL--SRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLH 461

Query: 494 TGDIGQILPNGVVKIIDRKKNLIK 517
           TGDIG I  +  + I+DR K LIK
Sbjct: 462 TGDIGLIDDDDELFIVDRLKELIK 485

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  170 bits (433), Expect = 5e-46
 Identities = 123/496 (24%), Positives = 181/496 (36%), Gaps = 120/496 (24%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY EVY+   +++  LRA G   G RV   G N  + +EA  A   +  +    
Sbjct: 43  GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK---E 188
              L P  + +IL+HAE   +   D  +  L+       + ++  V       E     E
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI--- 245
            A+     P    E                    C + YT+GT+G PKGVV +H  +   
Sbjct: 162 EALGEEADPVRVPE-------RAA----------CGMAYTTGTTGLPKGVVYSHRALVLH 204

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------LDRVIEEYFFRRGASVG 295
           +   S VD         ++  DV L  +P+ H+          L           GA   
Sbjct: 205 SLAASLVDGT------ALSEKDVVLPVVPMFHVNAWCLPYAATL----------VGAKQV 248

Query: 296 YYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLA 351
                L+     L+EL      T  AGVP V                             
Sbjct: 249 LPGPRLDP--ASLVELFDGEGVTFTAGVPTV----------------------------- 277

Query: 352 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLR--VTCCAFL 408
           W+ +                     RL   LR ++ GG+     +   F R  V     +
Sbjct: 278 WLAL------------ADYLESTGHRLK-TLRRLVVGGSAAPRSLIARFERMGVE----V 320

Query: 409 VQGYGLTETCGPTTVCFP----------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD 458
            QGYGLTET       F           +++ +    G       LR+ +  E    P D
Sbjct: 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKD 379

Query: 459 DPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 517
               GEV ++G  +  GYY N + TR ++  DG+F TGDI      G V+I DR K+LIK
Sbjct: 380 GKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK 439

Query: 518 ISQGEYVA-LEYLENV 532
            S GE+++ ++ LEN 
Sbjct: 440 -SGGEWISSVD-LENA 453

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  121 bits (305), Expect = 4e-29
 Identities = 81/439 (18%), Positives = 149/439 (33%), Gaps = 90/439 (20%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            ++E+ E   Q  + L  + G + G RV +     P+W   +  C    LI +P    + 
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
              + + L  ++   +   D+ ++E+  ++ +C S   LR+ +  +  + +         
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSCD--------- 182

Query: 195 IKPYSWDEFLHL--GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                W  F  L          +         I +TSGTSG PK    ++ ++       
Sbjct: 183 ----GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLA---HILDRVIEEYFFRRGASVGYYHG---DLNALRD 306
             +       +   D+  +        +IL  ++E +    GA    +     D   +  
Sbjct: 239 AGWTG-----LQASDIMWTISDTGWILNILCSLMEPWAL--GACTFVHLLPKFDPLVILK 291

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLA 366
            L       + G P V+              R L ++   + K                 
Sbjct: 292 TLSSYPIKSMMGAPIVY--------------RMLLQQDLSSYKF---------------- 321

Query: 367 DLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF 425
                          L+  ++ G  L  E  E +   T    + + YG TET G T +  
Sbjct: 322 -------------PHLQNCVTVGESLLPETLENWRAQTGLD-IRESYGQTET-GLTCMVS 366

Query: 426 PDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGYYKN 479
                  G  G   S Y    ++ + + G + L     G++ +R K      +FSGY  N
Sbjct: 367 KTMKIKPGYMGTAASCY---DVQIIDDKG-NVLPPGTEGDIGIRVKPIRPIGIFSGYVDN 422

Query: 480 PDLTRESIIDGWFHTGDIG 498
           PD T  +I   ++  GD G
Sbjct: 423 PDKTAANIRGDFWLLGDRG 441

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  114 bits (287), Expect = 4e-27
 Identities = 86/515 (16%), Positives = 144/515 (27%), Gaps = 148/515 (28%)

Query: 52  VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111
            +  P +    +  +     G  +  T+ ++Y   L +   L   G+  G RV I     
Sbjct: 34  ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92

Query: 112 PQWVEAMEACNALSLICVPLYDTLGPGAVN---FILDHAEIDFVFVQDKKVKELLSPDCR 168
            ++V A         I VPL    G         +L  +    +      V ++      
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDV------ 146

Query: 169 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW--DEFLHLGKVNEMEILPPQPFNICTIM 226
                             + +A + G  P S    + L L   N       +  +   + 
Sbjct: 147 -----------------VQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           YTSG++  P GVV++H+ +       +  +    +     +   +S+LP  H        
Sbjct: 190 YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD------- 242

Query: 286 YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345
                   V                  P +L G P V       ++      RP R    
Sbjct: 243 -----MGLVIGI-------------CAP-ILGGYPAVLTSPVSFLQ------RPAR---- 273

Query: 346 DALKLAWM--------------NMGYKQREASPLADLLAFRKVKARLGG----RLRLVIS 387
                 WM              N  +         +L A R     + G     +  ++S
Sbjct: 274 ------WMHLMASDFHAFSAAPNFAF---------ELAARRTTDDDMAGRDLGNILTILS 318

Query: 388 GGAPLSTE-VEEFLRVTCCAF---------LVQGYGLTETC----------GPTTVCFPD 427
           G   +    ++ F       F         +   Y L E             P TV F  
Sbjct: 319 GSERVQAATIKRFAD----RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDT 374

Query: 428 EMCMVGTAGPVSVYSELRLEEV------------PEMGYSPLDDPPCGEVCVRGKTLFSG 475
           E    G A P +      L                +       D   GE+ V G  + +G
Sbjct: 375 ESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTC-IECPDGTVGEIWVHGDNVANG 433

Query: 476 YYKNPDLTRESII------------DGWFHTGDIG 498
           Y++ PD +  +                W  TGD G
Sbjct: 434 YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSG 468

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  112 bits (281), Expect = 5e-26
 Identities = 89/514 (17%), Positives = 157/514 (30%), Gaps = 165/514 (32%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y     
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQE 101

Query: 138 GA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
                   I+ +++   V +    +K+  + +  +  +   +     +  E  E+   + 
Sbjct: 102 KLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA---IALESIELNRSSS 158

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            +P                    +  +I  + YTSG++  PKGV+++H  +   ++ +  
Sbjct: 159 WQPT-----------------SIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
                   M  + +  S+LP                      +H          M L   
Sbjct: 202 SFH-----MNDETIIFSWLP---------------------PHHD---------MGLIGC 226

Query: 315 LLAGV----------PRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM----------- 353
           +L  +          P  F +             PL           W+           
Sbjct: 227 ILTPIYGGIQAIMMSPFSFLQ------------NPLS----------WLKHITKYKATIS 264

Query: 354 ---NMGYKQREASPLADLLAFRKVKARLGG----RLRLVISGGAPLSTE-VEEFLRVTCC 405
              N  Y         D    R  + +  G          +G  P+  E +E F +    
Sbjct: 265 GSPNFAY---------DYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQ---- 311

Query: 406 AFLVQG---------YGLTETC----------GPTTVCFPDEMCMVGTAGPVSVYSELRL 446
           AF   G         YGL E               T+    E             S    
Sbjct: 312 AFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSY 371

Query: 447 EEV-------------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI------ 487
           + V             P+    P D    GE+ V+  ++  GY+  P+ TR +       
Sbjct: 372 KLVSSGNPIQEVKIIDPDTL-IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKD 430

Query: 488 ---IDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 518
                 +  TGD+G  L    + +  R K+LI I
Sbjct: 431 DERSAIYLRTGDLG-FLHENELYVTGRIKDLIII 463

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 82.2 bits (202), Expect = 2e-16
 Identities = 97/611 (15%), Positives = 173/611 (28%), Gaps = 193/611 (31%)

Query: 141 NFILDHAEIDFVFVQD--------KKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
            F+ +    D   VQD        +++  ++ S D   +  LR+     S   E  +  V
Sbjct: 28  AFVDN---FDCKDVQDMPKSILSKEEIDHIIMSKD-AVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 192 QTGIKP-YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
           +  ++  Y +     L  ++ ++    QP ++ T MY                       
Sbjct: 84  EEVLRINYKF-----L--MSPIKTEQRQP-SMMTRMYIE--------------------- 114

Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
                     D++  D+             +V  +Y   R             LR  L+E
Sbjct: 115 --------QRDRLYNDN-------------QVFAKYNVSRLQPY-------LKLRQALLE 146

Query: 311 LKPTLLAGVPRVFEKIH--EGIKK---ALEELRPLRRRIFDALKLAWMNMGYKQREASPL 365
           L+P        V   I    G  K   AL+     + +     K+ W+N+       + L
Sbjct: 147 LRPA-----KNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 366 ADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCC------AFLVQGYGLTETC 418
             L      +       R   S    L    ++  LR            LV    L    
Sbjct: 200 EMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----LLNVQ 254

Query: 419 GPTTV-CFPDEMC--MVGT-------AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR 468
                  F +  C  ++ T           +  + + L+       +P       E    
Sbjct: 255 NAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTP------DE---- 302

Query: 469 GKTLFSGY--YKNPDLTRESIIDGWFHTGDIGQILPNGVVKI-------IDRKKNLIKIS 519
            K+L   Y   +  DL RE +         I + + +G+           D+   +I+ S
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 520 ---------QGEYVALEYL-ENVYCVAPIIEDIWVYGDSLKSMLVAVVVP----CEEDTK 565
                    +  +  L     + +    ++  IW        M+V   +      E+  K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 566 KWAYS--------------------------NGHAGSFLELCSLVQLQNYILS----ELK 595
           +   S                          N       +      L  Y  S     LK
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 596 NAAERNKLRGFEHIKGVILDPRPFDMERDL------------VTATLKKKRNKLLIY--Y 641
           N     ++  F  +    LD R F +E+ +            +  TL     +L  Y  Y
Sbjct: 483 NIEHPERMTLFRMV---FLDFR-F-LEQKIRHDSTAWNASGSILNTL----QQLKFYKPY 533

Query: 642 QVEIDQLYEKL 652
             + D  YE+L
Sbjct: 534 ICDNDPKYERL 544

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 76.7 bits (188), Expect = 4e-15
 Identities = 52/369 (14%), Positives = 101/369 (27%), Gaps = 48/369 (13%)

Query: 150 DFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEMAVQTGIKPY----SWDEF 203
           D+    D  +K     D  +  +  +   F+  T       M  Q    P     + ++ 
Sbjct: 6   DYSLEIDAVMKAAQINDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDL 65

Query: 204 LHLG-KVNEMEILPPQPF--------NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                  + +   P            +   +  + GT+G PK VV     I   +S    
Sbjct: 66  RQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMS 125

Query: 255 FLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
                          L+ +P   HI+  + +E   R G           ++  D   +K 
Sbjct: 126 GYQHRP--GRPSGNTLAAIPTGPHIVGAINKERALRLGGMF-------FSIDIDPRWVKR 176

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFR- 372
           +L  G      K           L    +       + ++          P+   L  R 
Sbjct: 177 SLSEGDTATVRKY-------THHLVDQVQNTLMNQDIRFLVT------TPPVLRELLKRP 223

Query: 373 KVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQGYGLTETCGPTTVCFPDEMC 430
           +V  ++   L  +  GG  L+ +  +F+   +         YG T   G +         
Sbjct: 224 EVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSES 283

Query: 431 MVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKT---LFSGYYKNPDLTRES 486
                   S +    +  V        ++    G V V   +    +    +     R  
Sbjct: 284 QQVIYDSFSPFITYDV--VDSITA-QTVEYGERGNVIVTHLSPWAFYPRVAERDTAIRLP 340

Query: 487 IIDGWFHTG 495
            + G+    
Sbjct: 341 GVSGFAGDR 349

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 33/218 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           V  + N A+D+  +  +  P    + W    D      ++ T+K++     +  +     
Sbjct: 51  VPENFNFAYDVVDVYARDSPEKLAMIW---CDDYGNEKIF-TFKDLKYYSDKAANFFVKH 106

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G   G  V +   +   +   M   + L  I VP    L    + + ++ A +  +    
Sbjct: 107 GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166

Query: 157 -----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
                ++V E    +C      +  V                G     W +F    +   
Sbjct: 167 EDDVPEQVDEAH-AECGDIPLKKAKV---------------GGDVLEGWIDFRKELE-ES 209

Query: 212 MEILPPQPFNICT-------IMYTSGTSGDPKGVVLTH 242
             I       + T       + ++SGT+G PK V   +
Sbjct: 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)

Query: 381 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET---CGPTTVCFPDEMCMVGTAG 436
            L+  +  G PL+ EV   FL  T    L++G+G TET          FP      G+ G
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETVVTIAT----FPWMEPKPGSIG 396

Query: 437 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGYYKNPDLTRESIIDG 490
            P   Y   ++E +   G    +    GE+ +         LF  Y K+P+ T E+  DG
Sbjct: 397 KPTPGY---KIELMDRDG-RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG 452

Query: 491 WFHTGDIG 498
           ++HTGD+ 
Sbjct: 453 YYHTGDMA 460

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 63.7 bits (156), Expect = 9e-11
 Identities = 59/320 (18%), Positives = 93/320 (29%), Gaps = 97/320 (30%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV ++H+ + +F +     ++     +      L+  P +   D    
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FD---- 200

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK--KALEELRPLRR 342
                   SV              M   PTL  G         E +   K L     + +
Sbjct: 201 -------LSV--------------MYWAPTLALGGTLFALP-KELVADFKQLFTT--IAQ 236

Query: 343 RIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLR 401
                               S     +            L      G  L+     +   
Sbjct: 237 LPVGIWTST----------PSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFE 286

Query: 402 VTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP----- 456
               A ++  YG TE     TV              +S   E+  E V      P     
Sbjct: 287 RFPSAKIINAYGPTEA----TVA-------------LSAI-EITREMVDNYTRLPIGYPK 328

Query: 457 -------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWF----HTGDIG 498
                  +D+          GE+ V G  +  GY  NP+ T E+          HTGDIG
Sbjct: 329 PDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIG 388

Query: 499 QILPNGV----------VKI 508
            +  + +          +K 
Sbjct: 389 SLTEDNILLYGGRLDFQIKY 408

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 60.7 bits (148), Expect = 1e-09
 Identities = 87/482 (18%), Positives = 158/482 (32%), Gaps = 147/482 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI------CVPL 131
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +        +       +P+
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG------VLKAGAAYLPV 544

Query: 132 YDTLGPGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
            D   P   ++++L  +    +    +++KE  +    +   L +               
Sbjct: 545 -DPKLPEDRISYMLADSAAACLLTH-QEMKEQAAELPYTGTTLFI--------------- 587

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
                              +    + P   +   IMYTSGT+G PKG + TH  I   V 
Sbjct: 588 --------DDQTRFEEQASDPATAIDPN--DPAYIMYTSGTTGKPKGNITTHANIQGLVK 637

Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV----GYYHGDLNAL 304
            VD          +  D +LS    A   D    +++      A +     +   D   L
Sbjct: 638 HVDYM------AFSDQDTFLSVSNYA--FDAFTFDFYASMLNAARLIIADEHTLLDTERL 689

Query: 305 RDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASP 364
            D +++    ++     +F  + +      + ++ LR                       
Sbjct: 690 TDLILQENVNVMFATTALFNLLTD---AGEDWMKGLRC---------------------- 724

Query: 365 LADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTV 423
                               ++ GG   S   V + LR+     L+  YG TE     TV
Sbjct: 725 --------------------ILFGGERASVPHVRKALRIMGPGKLINCYGPTE----GTV 760

Query: 424 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP-------------LDD-----PP--CG 463
                          + +    + ++P+   S              L++     P    G
Sbjct: 761 F-------------ATAH---VVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVG 804

Query: 464 EVCVRGKTLFSGYYKNPDLTRESIIDGWFH-------TGDIGQILPNGVVKIIDRKKNLI 516
           E+C+ G  +  GY    DLT+E  I+  F        TGD+ + LP+G ++   R  + +
Sbjct: 805 ELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQV 864

Query: 517 KI 518
           KI
Sbjct: 865 KI 866

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 58/319 (18%), Positives = 95/319 (29%), Gaps = 101/319 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLSFLPLAHILDR 281
           ++YTSG++G PKGV ++   +++F       +     K   +     +L     A   D 
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA--FDV 237

Query: 282 VIEEYF--FRRGAS--VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
            I E F  +R G     G     L+ L     EL  T    VP + ++         E+ 
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDA 293

Query: 338 RPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 397
             L                                            +  GG  ++   +
Sbjct: 294 PHLVY------------------------------------------LGVGGEKMTPRTQ 311

Query: 398 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP- 456
           +    +    LV  YG TE     T+               S    L   +   +G  P 
Sbjct: 312 QIWSSSDRVALVNVYGPTE----VTIG-------------CSAGRILPDSDTRCIG-HPL 353

Query: 457 -------LDD------PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGW--FHTGDIGQ 499
                  L             GE+ + G  + +GY   PD      I+G   + TGDI +
Sbjct: 354 GDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVR 413

Query: 500 ILPNGV----------VKI 508
           +  +            VK+
Sbjct: 414 MDADSSILFLGRKDEQVKV 432

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 54.4 bits (132), Expect = 6e-08
 Identities = 52/283 (18%), Positives = 90/283 (31%), Gaps = 85/283 (30%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV ++   + +F   +      F   ++   ++L+  P +   D    
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFP--VSGGKIFLNQAPFS--FD---- 196

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK--KALEELRPLRR 342
                   SV              M+L P L +G         + +   K L E   L++
Sbjct: 197 -------LSV--------------MDLYPCLQSGGTLHCVT-KDAVNKPKVLFEE--LKK 232

Query: 343 RIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLR 401
              +                S +   L        L       +  G  L     +  L 
Sbjct: 233 SGLNVWTST----------PSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLE 282

Query: 402 VTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP----- 456
               A +   YG TE     TV              V+   E+  + +      P     
Sbjct: 283 RFPKAKIFNTYGPTEA----TVA-------------VTSV-EITNDVISRSESLPVGFAK 324

Query: 457 -------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 485
                  +D+     P    GE+ + G ++  GY   P+LT +
Sbjct: 325 PDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEK 367

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 54.4 bits (132), Expect = 8e-08
 Identities = 57/319 (17%), Positives = 88/319 (27%), Gaps = 98/319 (30%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SGT+G PK +  TH  I        L L Q          +L   PL+   D    
Sbjct: 169 INFSSGTTGRPKAIACTHAGI------TRLCLGQSFLAFAPQMRFLVNSPLS--FDAATL 220

Query: 285 EYF--FRRGASV---GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           E +     G           D   LR  + E           +F  + +      + L  
Sbjct: 221 EIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVD---LDPDCLGG 277

Query: 340 LRRRIF--DALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 397
           LR+ +   D L +  +                  R+   R                    
Sbjct: 278 LRQLLTGGDILSVPHV------------------RRALLRHPRLH--------------- 304

Query: 398 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV-------SVY---SELRLE 447
                     LV GYG TE    T      +  +     P+       +V       +  
Sbjct: 305 ----------LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQE- 353

Query: 448 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------TGDIGQ 499
            + E   +       GE+   G  L  GY  +   TR S ++  +         TGD  +
Sbjct: 354 -IAEPDRA-------GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRAR 405

Query: 500 ILPNGV----------VKI 508
               G           VK+
Sbjct: 406 YDEQGRLRFIGRGDGQVKL 424

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 52.1 bits (126), Expect = 4e-07
 Identities = 49/281 (17%), Positives = 91/281 (32%), Gaps = 81/281 (28%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV +T+  + +F        + F   +    V+L+  P +   D    
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFN--LQTGQVFLNQAPFS--FD---- 197

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M++ P+L+ G         + I +  +    L +  
Sbjct: 198 -------LSV--------------MDIYPSLVTGGTLWAID-KDMIARPKDLFASLEQSD 235

Query: 345 FDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVT 403
                             S     L        +   ++  +  G  L  E   + +   
Sbjct: 236 IQVWTST----------PSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERF 285

Query: 404 CCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP------- 456
             A ++  YG TE     TV              V+    +  E + +    P       
Sbjct: 286 PKATIMNTYGPTEA----TVA-------------VTGI-HVTEEVLDQYKSLPVGYCKSD 327

Query: 457 -----LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 485
                + +     P    GE+ + G ++  GY  +P+LT +
Sbjct: 328 CRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 51.7 bits (125), Expect = 5e-07
 Identities = 60/327 (18%), Positives = 103/327 (31%), Gaps = 121/327 (37%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G+PKG +L H+ I+        F +     +T  D    F  ++   D  + 
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVF---FENSLN--VTEKDRIGQFASIS--FDASVW 239

Query: 285 EYF--FRRGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
           E F     GAS+         D       + + + T++   P     +        E + 
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------ERIL 293

Query: 339 PLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VE 397
            ++                                           +I+ G+  S   V 
Sbjct: 294 SIQT------------------------------------------LITAGSATSPSLVN 311

Query: 398 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP- 456
           ++         +  YG TE    TT+C              + +      +       P 
Sbjct: 312 KWKEKVT---YINAYGPTE----TTIC-------------ATTW---VATKETIGHSVPI 348

Query: 457 -----------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH----- 493
                      +D+          GE+C+ G+ L  GY+K P+LT +  +D  F      
Sbjct: 349 GAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKL 408

Query: 494 --TGDIGQILPNGV----------VKI 508
             TGD  + L +G           VKI
Sbjct: 409 YKTGDQARWLSDGNIEYLGRIDNQVKI 435

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           +Y+E++ +V +  + L   G + G  V IY    P+   AM AC
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	657
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.95
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.22
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.05
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.72
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.58
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.45
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	90.96
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	90.2
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	89.85
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	82.55

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=2.6e-75  Score=643.60  Aligned_cols=504  Identities=19%  Similarity=0.174  Sum_probs=411.4

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..++.++|+++++++|+++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   94 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            468999999999999999999874   2      6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh----hhhccccccccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (657)
                      |+++|++++|++|.++.+++.++++.++++++|++.....    ..........+.++.++..++..             
T Consensus        95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  161 (539)
T 1mdb_A           95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-------------  161 (539)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred             HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence            9999999999999999999999999999999999875321    11111111123344444433211             


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                        .+.++.... ..........++++++++|||||||.||+|++||+++.+.+......+     ++.++|++++.+|++
T Consensus       162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  233 (539)
T 1mdb_A          162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA  233 (539)
T ss_dssp             --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred             --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence              011111111 111122345678999999999999999999999999999988877666     789999999999999


Q ss_pred             HHHHHHH--HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM  353 (657)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (657)
                      |.+++..  .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+.....                    
T Consensus       234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------  293 (539)
T 1mdb_A          234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR--------------------  293 (539)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------
T ss_pred             ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc--------------------
Confidence            9999874  6778999999999876 8999999999999999999999999987643210                    


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccC
Q 006197          354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  433 (657)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~  433 (657)
                                            ...+++||.+++||+++++++.+++.+.+|+++++.||+||++..++..........+
T Consensus       294 ----------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  351 (539)
T 1mdb_A          294 ----------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVN  351 (539)
T ss_dssp             ----------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHH
T ss_pred             ----------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCC
Confidence                                  0112589999999999999999999998899999999999965433322221223347


Q ss_pred             ccCcCccC-eeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEec
Q 006197          434 TAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR  511 (657)
Q Consensus       434 ~~G~~~~~-~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR  511 (657)
                      ++|+|+++ .+++|+| +++.  +++.|+.|||+|+||+++.||+++++.|.+.| .+|||+|||+|++|+||+++++||
T Consensus       352 ~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR  428 (539)
T 1mdb_A          352 TQGKPMSPYDESRVWD-DHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGR  428 (539)
T ss_dssp             CCCEESSTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred             CCCcccCCCceEEEEC-CCCC--CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEecc
Confidence            89999975 5899998 6554  55567899999999999999999999999999 699999999999999999999999


Q ss_pred             CcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHH
Q 006197          512 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  588 (657)
Q Consensus       512 ~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (657)
                      .||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++....         .        .      
T Consensus       429 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~---------~--------~------  484 (539)
T 1mdb_A          429 AKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------P--------K------  484 (539)
T ss_dssp             GGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------C--------C------
T ss_pred             ccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC---------C--------C------
Confidence            9999996 8999999999999999999999999987644   4788998876421         0        1      


Q ss_pred             HHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006197          589 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  651 (657)
Q Consensus       589 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~ly~~  651 (657)
                        .++|++++++..||.|++|+.|+++++      +|+|++||++|++|+++|.+.|+++|++
T Consensus       485 --~~~l~~~l~~~~L~~~~~P~~i~~v~~------lP~t~~GKi~r~~L~~~~~~~i~~~y~~  539 (539)
T 1mdb_A          485 --AAELKAFLRERGLAAYKIPDRVEFVES------FPQTGVGKVSKKALREAISEKLLAGFKK  539 (539)
T ss_dssp             --HHHHHHHHHHTTCCGGGSCSEEEECSS------CCBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred             --HHHHHHHHHhCCCCcccCCCEEEEecc------CCCCCCcCEeHHHHHHHHHHHHhccccC
Confidence              133445554334999999999999765      4999999999999999999999999974

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=3.2e-75  Score=644.67  Aligned_cols=517  Identities=20%  Similarity=0.227  Sum_probs=395.1

Q ss_pred             CCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCC--CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 006197           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA  109 (657)
Q Consensus        32 ~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~--~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~  109 (657)
                      .++|+.+....++.++|+++++++||++|+++.   ++  ..+.++++||+||.++++++|++|++.|+++||+|+++++
T Consensus         9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~   85 (549)
T 3g7s_A            9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP   85 (549)
T ss_dssp             CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence            446777777889999999999999999999987   42  2334578999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHH
Q 006197          110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (657)
Q Consensus       110 n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  189 (657)
                      |++++++++|||+++|++++|++|.++.+++.++++.++++++|++....+.+......  .....++..+..       
T Consensus        86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------  156 (549)
T 3g7s_A           86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE-------  156 (549)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS-------
T ss_pred             CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC-------
Confidence            99999999999999999999999999999999999999999999998877655443322  224455555432       


Q ss_pred             HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEE
Q 006197          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (657)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (657)
                             ..++.++...............++++++|+|||||||.||+|++||+++.+.+..+...+     ++.++|++
T Consensus       157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  224 (549)
T 3g7s_A          157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTI  224 (549)
T ss_dssp             -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEE
T ss_pred             -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEE
Confidence                   224555555442222222222348999999999999999999999999999998887777     78999999


Q ss_pred             EEecChhHHHHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006197          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (657)
Q Consensus       270 l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (657)
                      ++.+|++|.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+........            
T Consensus       225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------  292 (549)
T 3g7s_A          225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT------------  292 (549)
T ss_dssp             ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC------------
T ss_pred             EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc------------
Confidence            999999999998887778999999998876 9999999999999999999999999987653321100            


Q ss_pred             HHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHh----cC---CceeeeccCCCCCCcc
Q 006197          349 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETCGPT  421 (657)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~---~~v~~~yG~tE~~~~~  421 (657)
                                                  ..++++|.+++||+++++++.+.+.+.    ++   +.+++.||+||+++.+
T Consensus       293 ----------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~  344 (549)
T 3g7s_A          293 ----------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMV  344 (549)
T ss_dssp             ----------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEE
T ss_pred             ----------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhh
Confidence                                        011489999999999999999999887    56   8899999999999888


Q ss_pred             ccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc---cCC--ccccCc
Q 006197          422 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFHTGD  496 (657)
Q Consensus       422 ~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~---~~g--~~~TGD  496 (657)
                      +..........+++|.|+++++++|+|.+++  .+++.|+.|||+|+||+++.|||++++.+.+.|   .+|  ||+|||
T Consensus       345 ~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGD  422 (549)
T 3g7s_A          345 TTNPPLRLDKSTTQGVPMSDIELKVISLEDG--RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGD  422 (549)
T ss_dssp             EECCGGGGGGTTSCCEECTTCEEEEECSSSC--CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEE
T ss_pred             hcCCccccCcCCCccccCCCCEEEEEeCCCC--cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCc
Confidence            7766555455689999999999999983333  455677899999999999999999999999998   678  999999


Q ss_pred             eEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCC
Q 006197          497 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGH  573 (657)
Q Consensus       497 l~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~  573 (657)
                      +|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..        .
T Consensus       423 l~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~--------~  493 (549)
T 3g7s_A          423 VGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR--------G  493 (549)
T ss_dssp             EEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT--------T
T ss_pred             EEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc--------C
Confidence            9999999999999999999997 8999999999999999999999999997654   47889999876520        0


Q ss_pred             CccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          574 AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                      ..      .        .++|+++++ ++||.|++|+.|+++++.      |+|++|||+|++|++++.+.
T Consensus       494 ~~------~--------~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~  543 (549)
T 3g7s_A          494 KV------D--------EEDIIEWVR-ERISGYKRVREVEFVEEL------PRTASGKLLRRLLREKEAEG  543 (549)
T ss_dssp             SC------C--------HHHHHHHHH-TTCC-----CCCCEEEEC------C-------------------
T ss_pred             cC------C--------HHHHHHHHH-HhccCcccceEEEEeccC------CCCCCcCEeHHHHHHHhhcc
Confidence            00      1        133444444 789999999999998764      99999999999999988653

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.5e-74  Score=637.44  Aligned_cols=523  Identities=25%  Similarity=0.314  Sum_probs=422.4

Q ss_pred             CCCCCCceeccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcC
Q 006197           18 KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG   97 (657)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G   97 (657)
                      +|.+..+|++.......|    ...++.++|.++++++|+++|+++.   ++.    +++||+||.++++++|++|++.|
T Consensus         2 ~~~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~G   70 (536)
T 3ni2_A            2 NPQEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIG   70 (536)
T ss_dssp             ---CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTT
T ss_pred             CcccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcC
Confidence            356667777765544444    3478999999999999999999875   322    68999999999999999999999


Q ss_pred             CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEE
Q 006197           98 AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMV  177 (657)
Q Consensus        98 ~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~  177 (657)
                      +++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++....+.+.......  .. .++
T Consensus        71 v~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~  147 (536)
T 3ni2_A           71 IQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVM  147 (536)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEE
Confidence            999999999999999999999999999999999999999999999999999999999988766554432211  22 344


Q ss_pred             EecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcc
Q 006197          178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD  257 (657)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~  257 (657)
                      .++...           .....+.++..... ...+.....++++++|+|||||||.||+|++||+++++.+........
T Consensus       148 ~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~  215 (536)
T 3ni2_A          148 CVDSAP-----------DGCLHFSELTQADE-NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN  215 (536)
T ss_dssp             ESSCCC-----------TTCEETHHHHTSCG-GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS
T ss_pred             EecCCC-----------CCccCHHHHhhccc-cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc
Confidence            443321           12345566654432 222334567899999999999999999999999999988766433211


Q ss_pred             cccCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHH
Q 006197          258 QFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (657)
Q Consensus       258 ~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~  335 (657)
                       ....+.++|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...    
T Consensus       216 -~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----  290 (536)
T 3ni2_A          216 -PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD----  290 (536)
T ss_dssp             -CSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC----
T ss_pred             -ccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc----
Confidence             0125789999999999999999865 5678999999999876 89999999999999999999999988764210    


Q ss_pred             hhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccC
Q 006197          336 ELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGL  414 (657)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~  414 (657)
                                                    .+.        ..+++||.+++||+++++++.+.+++.+ ++++++.||+
T Consensus       291 ------------------------------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~  332 (536)
T 3ni2_A          291 ------------------------------LDK--------HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGM  332 (536)
T ss_dssp             ------------------------------GGG--------SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEEC
T ss_pred             ------------------------------ccc--------CCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccc
Confidence                                          111        1125899999999999999999999988 8999999999


Q ss_pred             CCCCCcccccc----CCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cC
Q 006197          415 TETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID  489 (657)
Q Consensus       415 tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~  489 (657)
                      ||++.+++.+.    .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.|.+.| .+
T Consensus       333 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~  410 (536)
T 3ni2_A          333 TEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKE  410 (536)
T ss_dssp             GGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTT
T ss_pred             cccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCC
Confidence            99998765542    12233458999999999999998 4433 456677899999999999999999999999999 79


Q ss_pred             CccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHH
Q 006197          490 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  566 (657)
Q Consensus       490 g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~  566 (657)
                      |||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+..++.   
T Consensus       411 g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~---  486 (536)
T 3ni2_A          411 GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS---  486 (536)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC---
T ss_pred             CceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC---
Confidence            99999999999999999999999999998 7999999999999999999999999986543   4788999887642   


Q ss_pred             HHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          567 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                           ..        .        .++|+++++ ++||.|++|+.|+++++.      |+|++|||+|++|+++|++
T Consensus       487 -----~~--------~--------~~~l~~~l~-~~l~~~~~p~~i~~v~~l------P~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          487 -----QA--------T--------EDEIKQYIS-KQVIFYKRIKRVFFIEAI------PKAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             -----CC--------C--------HHHHHHHHH-TTSCGGGCCSEEEECSCC------CBCTTSCBCHHHHHTC---
T ss_pred             -----CC--------C--------HHHHHHHHH-HhccCCccccEEEEEecC------CCCCCCCeeHHHHHHHhcc
Confidence                 00        1        123444454 789999999999997654      9999999999999998764

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.1e-73  Score=627.36  Aligned_cols=498  Identities=23%  Similarity=0.304  Sum_probs=406.8

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      +...++.++|+++++++|+++|+++.   +..    +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~   85 (517)
T 3r44_A           13 DKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF   85 (517)
T ss_dssp             GGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence            56789999999999999999999975   322    58999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      |||+++|++++|+++.++.+++.++++.++++++|++......+....... .....++.....               .
T Consensus        86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~  149 (517)
T 3r44_A           86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIGA---------------D  149 (517)
T ss_dssp             HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEEH---------------H
T ss_pred             HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccCc---------------c
Confidence            999999999999999999999999999999999999987765543321111 111111111100               1


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                      .+.+.+... ....+.....++++++|+|||||||.||+|++||+++.+.+......+     ++.++|++++.+|++|.
T Consensus       150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  223 (517)
T 3r44_A          150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV  223 (517)
T ss_dssp             HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred             cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence            233333322 122233455789999999999999999999999999999998877776     78999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCC
Q 006197          279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGY  357 (657)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (657)
                      +++...+.++..|+++++.+. ++..+++.+.++++|++.++|+++..|.+....                         
T Consensus       224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------  278 (517)
T 3r44_A          224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF-------------------------  278 (517)
T ss_dssp             HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH-------------------------
T ss_pred             HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------------------------
Confidence            999876666669999998876 999999999999999999999999988653221                         


Q ss_pred             CCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC-ccccCccC
Q 006197          358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG  436 (657)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~~G  436 (657)
                                       ....+++||.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....+++|
T Consensus       279 -----------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G  340 (517)
T 3r44_A          279 -----------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAG  340 (517)
T ss_dssp             -----------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCB
T ss_pred             -----------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCC
Confidence                             11123589999999999999999999887 999999999999998776654433 34458999


Q ss_pred             cCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCccee
Q 006197          437 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  516 (657)
Q Consensus       437 ~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i  516 (657)
                      +|++++++++++ +++...  +.+ .|||+|+||+++.||+++++.|.+.|.+|||+|||+|++|+||+++++||.||+|
T Consensus       341 ~~~~~~~~~i~d-~~~~~~--~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~i  416 (517)
T 3r44_A          341 RATMFTDVAVRG-DDGVIR--EHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMI  416 (517)
T ss_dssp             EECTTEEEEEEC-TTSCEE--SSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCE
T ss_pred             cCCCCeEEEEEC-CCCCCC--CCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEE
Confidence            999999999998 665433  334 7999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHH
Q 006197          517 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  593 (657)
Q Consensus       517 ~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (657)
                      |+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++++|+.....         .        ..        ++
T Consensus       417 k~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~---------~--------~~--------~~  470 (517)
T 3r44_A          417 IS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE---------V--------SE--------QQ  470 (517)
T ss_dssp             EE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT---------C--------CH--------HH
T ss_pred             EE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC---------C--------CH--------HH
Confidence            97 8999999999999999999999999986544   3566666433221         0        11        23


Q ss_pred             HHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          594 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       594 l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                      |+++++ ++||.|++|+.|+++++      +|+|++|||+|++|+++|.+.+
T Consensus       471 l~~~l~-~~L~~~~~P~~i~~v~~------lP~t~~GKi~R~~L~~~~~~~~  515 (517)
T 3r44_A          471 IVEYCG-TRLARYKLPKKVIFAEA------IPRNPTGKILKTVLREQYSATV  515 (517)
T ss_dssp             HHHHHH-HHSCGGGSCSEEEECSC------CCBCTTCCBCHHHHHHHHGGGC
T ss_pred             HHHHHH-HhCCCCCCCCEEEEECC------CCCCCCcCccHHHHHHHHHhhc
Confidence            444443 57999999999999765      4999999999999999997654

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=3.8e-73  Score=630.22  Aligned_cols=510  Identities=17%  Similarity=0.154  Sum_probs=399.3

Q ss_pred             CCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006197           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (657)
Q Consensus        38 ~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~  117 (657)
                      |..++.+.++|+.+|+++||++|+++.   +. .+..+++||+||.++++++|++|+++|+++||+|+++++|+++++++
T Consensus        52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~  127 (580)
T 3etc_A           52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC  127 (580)
T ss_dssp             CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred             cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence            456777779999999999999999986   33 23458999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhh--hhhhccccccccCc-eEEEEecCCcHHHHHHHhhCC
Q 006197          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTG  194 (657)
Q Consensus       118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~  194 (657)
                      +|||+++|++++|+++.++.+++.++++.++++++|++.+..  ..+.+... ..+.. ..++.++...          .
T Consensus       128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~  196 (580)
T 3etc_A          128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA-ECGDIPLKKAKVGGDV----------L  196 (580)
T ss_dssp             HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHH-HHCSCCCEEEEESSSC----------C
T ss_pred             HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhh-hCCCcceEEEEeCCcc----------c
Confidence            999999999999999999999999999999999999987653  33222111 11222 3444444321          1


Q ss_pred             cceeeHHHHHhcCccCCccC---CCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEE
Q 006197          195 IKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (657)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (657)
                      ....++.+.+..........   ....++|+++|+|||||||.||+|.++|.+++..+......+     ++.+++++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  271 (580)
T 3etc_A          197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT  271 (580)
T ss_dssp             TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred             cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence            12446666665443222111   245789999999999999999999999999888776644444     7889999999


Q ss_pred             ecChhHHHHHHH-HHHHHhcCcEEEEec---CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 006197          272 FLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (657)
Q Consensus       272 ~~pl~~~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (657)
                      ..|+.|..+... .+.++..|+++++.+   .++..+++.|+++++|+++++|+++..|.+..                 
T Consensus       272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-----------------  334 (580)
T 3etc_A          272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-----------------  334 (580)
T ss_dssp             CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-----------------
T ss_pred             eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-----------------
Confidence            999999887765 567799999998874   28999999999999999999999998876420                 


Q ss_pred             HHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCC
Q 006197          348 LKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  427 (657)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~  427 (657)
                                        ..        ...+++||.+++||+++++++.++|.+.+|+++++.||+||++..++..+..
T Consensus       335 ------------------~~--------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~  388 (580)
T 3etc_A          335 ------------------LS--------HYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM  388 (580)
T ss_dssp             ------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS
T ss_pred             ------------------cc--------cCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCC
Confidence                              00        1122589999999999999999999998899999999999998776655433


Q ss_pred             CccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc-----CCcccccCCCchhhhccccCCccccCceEEEcC
Q 006197          428 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP  502 (657)
Q Consensus       428 ~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g-----~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~  502 (657)
                       ....+++|+|+++++++|+| +++.  +++.|+.|||+|+|     +.++.||+++++.|.+.|.+|||+|||+|++|+
T Consensus       389 -~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~  464 (580)
T 3etc_A          389 -EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDE  464 (580)
T ss_dssp             -CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECT
T ss_pred             -CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECC
Confidence             34458999999999999999 6655  45567899999997     789999999999999999999999999999999


Q ss_pred             CCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHH
Q 006197          503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  579 (657)
Q Consensus       503 ~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  579 (657)
                      ||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..               
T Consensus       465 dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~---------------  528 (580)
T 3etc_A          465 DGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT---------------  528 (580)
T ss_dssp             TSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC---------------
T ss_pred             CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC---------------
Confidence            9999999999999998 6999999999999999999999999987654   47889999887530               


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          580 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       580 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                        ....+    .++|+++++ +.||.|++|+.|+++++.      |+|++|||+|++|++++.+
T Consensus       529 --~~~~~----~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~sGKi~R~~Lr~~~~~  579 (580)
T 3etc_A          529 --PSDSL----KNELQDHVK-NVTAPYKYPRIIEFVPEL------PKTISGKIRRVEIRDKDQS  579 (580)
T ss_dssp             --CCHHH----HHHHHHHHH-HHSCGGGCCSEEEEECC--------------------------
T ss_pred             --CCHHH----HHHHHHHHH-hhCCCccCCeEEEEeCCC------CCCCCcCCcHHHHHhHhhc
Confidence              11222    344555554 579999999999997664      9999999999999998865

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=5.8e-74  Score=633.15  Aligned_cols=504  Identities=24%  Similarity=0.289  Sum_probs=385.0

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..++.++|+++++++|+++|+++.   ++  +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA   91 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA   91 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            358999999999999999999864   21  2237899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|+++.++.+++.++|+.++++++|++.+....+.... ...+..+.++.++....          .....+
T Consensus        92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~  160 (541)
T 1v25_A           92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLAY  160 (541)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEEH
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------cccccH
Confidence            9999999999999999999999999999999999988765543322 12234455666554221          012355


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhh--hhhcccccCCCCCCcEEEEecChhHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                      .+++.....    .....++++++|+|||||||.||+|++||+++.......  ...+     ++.++|++++.+|++|.
T Consensus       161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~  231 (541)
T 1v25_A          161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV  231 (541)
T ss_dssp             HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred             HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence            555433211    134567899999999999999999999999998776542  2223     67899999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197          279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG  356 (657)
Q Consensus       279 ~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (657)
                      +++...+.++..|+++++.+.  ++..+++.++++++|+++++|+++..|.+......                      
T Consensus       232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------  289 (541)
T 1v25_A          232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------  289 (541)
T ss_dssp             HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------
T ss_pred             hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------
Confidence            998777788999999999864  89999999999999999999999999876543210                      


Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC--------
Q 006197          357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--------  428 (657)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~--------  428 (657)
                                          ..+++||.+++||+++++++.+++ +.+|+++++.||+||++..++......        
T Consensus       290 --------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~  348 (541)
T 1v25_A          290 --------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE  348 (541)
T ss_dssp             --------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHH
T ss_pred             --------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCcc
Confidence                                112489999999999999999999 567999999999999998776654331        


Q ss_pred             --ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCc
Q 006197          429 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGV  505 (657)
Q Consensus       429 --~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~  505 (657)
                        ....+++|+|+++++++|+| +++..++.+.++.|||+|+||+++.||+++++.|.+.| .+|||+|||+|++|++|+
T Consensus       349 ~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~  427 (541)
T 1v25_A          349 EKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGY  427 (541)
T ss_dssp             HHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCC
T ss_pred             ccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCce
Confidence              12347999999999999999 77765555445789999999999999999999999999 499999999999999999


Q ss_pred             EEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhc
Q 006197          506 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  582 (657)
Q Consensus       506 l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  582 (657)
                      ++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++....         .        .
T Consensus       428 l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------~--------~  489 (541)
T 1v25_A          428 VEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK---------P--------T  489 (541)
T ss_dssp             EEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------------
T ss_pred             EEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCC---------C--------C
Confidence            9999999999996 8999999999999999999999999997654   4788888876211         0        0


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          583 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       583 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                              .+++++++++.+||.|++|+.|+++++      +|+|++||++|++|+++|++.+
T Consensus       490 --------~~~l~~~~~~~~L~~~~~P~~i~~v~~------lP~t~~GKi~r~~L~~~~~~~~  538 (541)
T 1v25_A          490 --------PEELNEHLLKAGFAKWQLPDAYVFAEE------IPRTSAGKFLKRALREQYKNYY  538 (541)
T ss_dssp             -------------------CCCTTTSCSBC--------------------CCTTHHHHSTTSS
T ss_pred             --------HHHHHHHHHhccCccccCCcEEEEeCC------CCCCCccCeeHHHHHHHHHHhh
Confidence                    123334444238999999999998765      4999999999999999876543

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1.1e-72  Score=617.93  Aligned_cols=489  Identities=21%  Similarity=0.250  Sum_probs=397.2

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ++++.++|+++++++||++|+.+.   ++.    +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   73 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999874   322    7899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEE--cchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      |+++|++++|+++.++.+++.++++.++++++|+  +....+.+....    ...+ ++.                    
T Consensus        74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~--------------------  128 (504)
T 1t5h_X           74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIF--------------------  128 (504)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEE--------------------
T ss_pred             HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEE--------------------
Confidence            9999999999999999999999999999999999  665544331111    1111 221                    


Q ss_pred             eHHHHHhcCc----cCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCC--CCCcEEEEe
Q 006197          199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF  272 (657)
Q Consensus       199 ~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~  272 (657)
                       +.++.....    ..........++++++|+|||||||.||+|++||+++.+.+..+...+     ++  .++|++++.
T Consensus       129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~  202 (504)
T 1t5h_X          129 -LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL  202 (504)
T ss_dssp             -GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred             -ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence             122211110    111111345678999999999999999999999999998887766555     56  789999999


Q ss_pred             cChhHHHHHH-HHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006197          273 LPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKL  350 (657)
Q Consensus       273 ~pl~~~~g~~-~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (657)
                      +|++|.+++. ..+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+......                
T Consensus       203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------  266 (504)
T 1t5h_X          203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG----------------  266 (504)
T ss_dssp             SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------
T ss_pred             cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------
Confidence            9999999985 46778999999999876 89999999999999999999999999875321000                


Q ss_pred             HHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCcc
Q 006197          351 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  430 (657)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~  430 (657)
                                      +        ...+++||.+++||+++++++.+.+.+.++..+++.||+||++. +....   ..
T Consensus       267 ----------------~--------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~---~~  318 (504)
T 1t5h_X          267 ----------------S--------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR---QP  318 (504)
T ss_dssp             ----------------C--------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE---SC
T ss_pred             ----------------c--------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc---CC
Confidence                            0        00124899999999999999999999999999999999999933 22221   22


Q ss_pred             ccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEc-cCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEE
Q 006197          431 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII  509 (657)
Q Consensus       431 ~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~-g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~  509 (657)
                      ..+++|.|.+++++++++.+++...+++.|+.|||+|+ |++++.||+++++.|.+.|.+|||+|||+|++|+||+++++
T Consensus       319 ~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~  398 (504)
T 1t5h_X          319 KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRIL  398 (504)
T ss_dssp             SSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEE
T ss_pred             CCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEe
Confidence            34789999999999999833322356667889999999 99999999999999999999999999999999999999999


Q ss_pred             ecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHH
Q 006197          510 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  586 (657)
Q Consensus       510 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (657)
                      ||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++.        ..        .    
T Consensus       399 GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~--------~----  457 (504)
T 1t5h_X          399 GRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TL--------S----  457 (504)
T ss_dssp             EEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------CC--------C----
T ss_pred             CcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------Cc--------C----
Confidence            999999997 8999999999999999999999999997654   4799999987642        00        1    


Q ss_pred             HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          587 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       587 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                          .++|++++++++||.|++|+.|+++++.      |+|++|||+|++|+++|+
T Consensus       458 ----~~~l~~~~~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          458 ----ADALDTFCRSSELADFKRPKRYFILDQL------PKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             ----HHHHHHHHHTSSCCGGGSCSEEEECSCC------CBCTTSCBCHHHHHHHHC
T ss_pred             ----HHHHHHHHhhccCcccccceEEEEhhhC------CCCCCCCEeHHHHHHHhc
Confidence                1344555542389999999999997654      999999999999998874

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.6e-73  Score=631.29  Aligned_cols=525  Identities=24%  Similarity=0.257  Sum_probs=335.5

Q ss_pred             CCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 006197           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (657)
Q Consensus        32 ~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~  111 (657)
                      ++.|..+....|+.++|.++++++|+++|++...  ++..+  +++||+||.++++++|++|++.|+++||+|+++++|+
T Consensus        10 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~   85 (550)
T 3rix_A           10 GPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS   85 (550)
T ss_dssp             CCCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred             CCCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence            4456667778899999999999999999986220  22111  6899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHh
Q 006197          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (657)
Q Consensus       112 ~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  191 (657)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+..... ..+....++.++....       
T Consensus        86 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------  157 (550)
T 3rix_A           86 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTD-------  157 (550)
T ss_dssp             TTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSC-------
T ss_pred             ccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCcc-------
Confidence            99999999999999999999999999999999999999999999987766544322 2344556666554321       


Q ss_pred             hCCcceeeHHHHHhcCccC------CccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCC
Q 006197          192 QTGIKPYSWDEFLHLGKVN------EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV  265 (657)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~  265 (657)
                        .....++.++.......      ..+.....++++++|+|||||||.||+|++||+++...+......+  +..++.+
T Consensus       158 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~  233 (550)
T 3rix_A          158 --YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIP  233 (550)
T ss_dssp             --BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCT
T ss_pred             --ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCC
Confidence              11233455555432111      1111223457899999999999999999999999998877654431  1126788


Q ss_pred             CcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006197          266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (657)
Q Consensus       266 ~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (657)
                      +|++++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+...             
T Consensus       234 ~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------  300 (550)
T 3rix_A          234 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL-------------  300 (550)
T ss_dssp             TCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG-------------
T ss_pred             CcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc-------------
Confidence            9999999999999999888888999999999876 89999999999999999999999998864211             


Q ss_pred             HHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCc-eeeeccCCCCCCcccc
Q 006197          345 FDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTV  423 (657)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-v~~~yG~tE~~~~~~~  423 (657)
                                           .+..        .+++||.+++||+++++++.+++.+.++.. +++.||+||+++.++.
T Consensus       301 ---------------------~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  351 (550)
T 3rix_A          301 ---------------------IDKY--------DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI  351 (550)
T ss_dssp             ---------------------GGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred             ---------------------cccc--------CcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence                                 1111        125899999999999999999999988875 9999999999988776


Q ss_pred             ccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcC
Q 006197          424 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP  502 (657)
Q Consensus       424 ~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~  502 (657)
                      ...... ..+++|+|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.|.+.| .+|||+|||+|++|+
T Consensus       352 ~~~~~~-~~~~vG~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~  428 (550)
T 3rix_A          352 TPEGDD-KPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE  428 (550)
T ss_dssp             CCTTCC-CTTEEEEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred             CCCCCC-CCCCcccccCCcEEEEEe-CCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence            655443 448999999999999998 4433 456677899999999999999999999999999 899999999999999


Q ss_pred             CCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHH
Q 006197          503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  579 (657)
Q Consensus       503 ~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  579 (657)
                      ||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++++|++.++...              
T Consensus       429 dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~--------------  493 (550)
T 3rix_A          429 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM--------------  493 (550)
T ss_dssp             TCCEEEC-------------------------------------------------------------------------
T ss_pred             CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC--------------
Confidence            9999999999999997 8999999999999999999999999987654   477888887764310              


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHH
Q 006197          580 LCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY  649 (657)
Q Consensus       580 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~ly  649 (657)
                        .        .++|.++++ .+++.|+.|. .|+++++      +|+|++|||+|++|++++.+..+.-+
T Consensus       494 --~--------~~~l~~~~~-~~l~~~~~~~~~i~~v~~------lP~t~~GKi~r~~L~~~~~~~~~~~~  547 (550)
T 3rix_A          494 --T--------EKEIVDYVA-SQVTTAKKLRGGVVFVDE------VPKGLTGKLDARKIREILIKAKKGGK  547 (550)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             --C--------HHHHHHHHH-HhcccccccCCceEEEee------cCCCCCcceeHHHHHHHHHhhccccc
Confidence              0        123334443 5788776554 6777655      49999999999999999987665443

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.6e-73  Score=629.94  Aligned_cols=500  Identities=14%  Similarity=0.148  Sum_probs=333.7

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..++.++|+++++++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   99 (544)
T 3o83_A           29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA   99 (544)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468999999999999999999974    3     7899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh----hhhccccccccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (657)
                      |+++|++++|+++.++.+++.++++.++++++|++.....    ...............++..+....            
T Consensus       100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  167 (544)
T 3o83_A          100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------  167 (544)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred             HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence            9999999999999999999999999999999999876531    111111122234445555543211            


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                      ...+.++...............++++++|+|||||||.||+|++||+++.+.+......+     ++.++|++++.+|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  242 (544)
T 3o83_A          168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP  242 (544)
T ss_dssp             SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence            123444444332222223455789999999999999999999999999999998887777     889999999999999


Q ss_pred             HHHHHHH--HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM  353 (657)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (657)
                      |.+++..  .+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++......                   
T Consensus       243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  303 (544)
T 3o83_A          243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-------------------  303 (544)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-------------------
T ss_pred             eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-------------------
Confidence            9999874  6778999999999876 89999999999999999999999998876432111                   


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccC
Q 006197          354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  433 (657)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~  433 (657)
                                     .++        ++||.+++||+++++++.+++.+.+++++++.||+||++..++..........+
T Consensus       304 ---------------~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  360 (544)
T 3o83_A          304 ---------------DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFT  360 (544)
T ss_dssp             ---------------HHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHH
T ss_pred             ---------------ccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccC
Confidence                           011        489999999999999999999998999999999999988655444333334457


Q ss_pred             ccCcCc-cCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEec
Q 006197          434 TAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR  511 (657)
Q Consensus       434 ~~G~~~-~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR  511 (657)
                      ++|+|+ ++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.|.+.| .+|||+|||+|++|+||+++++||
T Consensus       361 ~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR  437 (544)
T 3o83_A          361 TQGRPISSDDEIKIVD-EQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGR  437 (544)
T ss_dssp             CCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEE
T ss_pred             CCceecCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEee
Confidence            899996 899999998 6655  45667899999999999999999999999999 799999999999999999999999


Q ss_pred             CcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHH
Q 006197          512 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  588 (657)
Q Consensus       512 ~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (657)
                      .||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+..+...                 .      
T Consensus       438 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-----------------~------  493 (544)
T 3o83_A          438 IKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL-----------------K------  493 (544)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             cCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC-----------------C------
Confidence            9999996 8999999999999999999999999987654   47788888765320                 0      


Q ss_pred             HHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          589 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       589 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                        ...+++++++..||.|++|+.|+++++      +|+|++||++|++|+++++.
T Consensus       494 --~~~l~~~~~~~~l~~~~~P~~i~~v~~------lP~t~~GKi~r~~L~~~~~~  540 (544)
T 3o83_A          494 --AVVLRRHLMELGIAQYKLPDQIKLIES------LPLTAVGKVDKKQLRSILNT  540 (544)
T ss_dssp             -------------------------------------------------------
T ss_pred             --HHHHHHHHHhCCCCcccCCcEEEEecc------CCCCCCCCCcHHHHHHHHhh
Confidence              123334444337999999999998765      49999999999999998865

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.6e-72  Score=622.34  Aligned_cols=510  Identities=24%  Similarity=0.268  Sum_probs=411.0

Q ss_pred             cCcHHH-HHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        41 ~~~i~~-~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ..++.+ +|.++++++ +++|+++.   ++.    +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   95 (548)
T 2d1s_A           24 SAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI   95 (548)
T ss_dssp             CHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred             cCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence            458999 899999999 99999863   221    689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++|+++.++.+++.++|+.++++++|++....+.+..... ..+....++.++....         ......
T Consensus        96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~  165 (548)
T 2d1s_A           96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQK-TVTTIKTIVILDSKVD---------YRGYQC  165 (548)
T ss_dssp             HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHH-HSTTCCEEEETTCSSC---------BTTBCB
T ss_pred             HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhc-CCCCCCEEEEeCCccc---------cccccc
Confidence            999999999999999999999999999999999999887655433211 1122344555443210         001234


Q ss_pred             HHHHHhcCccCCccCCCC------CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEec
Q 006197          200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~------~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~  273 (657)
                      +.++.........+....      .++++++++|||||||.||+|++||+++.+.+......+.  ..++.++|++++.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~  243 (548)
T 2d1s_A          166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV  243 (548)
T ss_dssp             HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred             HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence            555554331110111111      2389999999999999999999999999988877654410  12678999999999


Q ss_pred             ChhHHHHHHHH-HHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006197          274 PLAHILDRVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLA  351 (657)
Q Consensus       274 pl~~~~g~~~~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (657)
                      |++|.+++... +.++ .|+++++.+. ++..+++.|+++++|+++++|+++..|.+...                    
T Consensus       244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------  302 (548)
T 2d1s_A          244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL--------------------  302 (548)
T ss_dssp             CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--------------------
T ss_pred             cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--------------------
Confidence            99999998764 4556 9999998875 89999999999999999999999998864210                    


Q ss_pred             HhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCCcc
Q 006197          352 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC  430 (657)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~  430 (657)
                                    .+..        .+++||.+++||+++++++.+++.+.+ +..+++.||+||++..++..... ..
T Consensus       303 --------------~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~  359 (548)
T 2d1s_A          303 --------------LNKY--------DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG-DD  359 (548)
T ss_dssp             --------------GGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-CC
T ss_pred             --------------cccc--------cccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc-cC
Confidence                          0001        124899999999999999999999988 68899999999999877664433 33


Q ss_pred             ccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEE
Q 006197          431 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII  509 (657)
Q Consensus       431 ~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~  509 (657)
                      ..+++|+|+++++++|+|.+++  .+++.|+.|||+++||+++.||+++++.|.+.| .+|||+|||+|++|++|+++++
T Consensus       360 ~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~  437 (548)
T 2d1s_A          360 KPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIV  437 (548)
T ss_dssp             CTTCCBEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEE
T ss_pred             CCCCCCccCCCceEEEEeCCcC--ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEe
Confidence            4589999999999999983333  455677899999999999999999999999999 7999999999999999999999


Q ss_pred             ecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHH
Q 006197          510 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  586 (657)
Q Consensus       510 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (657)
                      ||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++.        ..        .    
T Consensus       438 GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~~--------~----  496 (548)
T 2d1s_A          438 DRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------NM--------T----  496 (548)
T ss_dssp             EEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C----
T ss_pred             ccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------CC--------C----
Confidence            999999997 8999999999999999999999999997654   4788999887642        00        1    


Q ss_pred             HHHHHHHHHHHHHhCCCCCceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006197          587 QNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  648 (657)
Q Consensus       587 ~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~l  648 (657)
                          .++|+++++ ++|+.|++|+ .|.++++      +|+|++||++|++|+++|++.|++|
T Consensus       497 ----~~~l~~~~~-~~l~~~~~p~~~i~~v~~------lP~t~~GKi~r~~L~~~~~~~i~~~  548 (548)
T 2d1s_A          497 ----EKEVMDYVA-SQVSNAKRLRGGVRFVDE------VPKGLTGKIDGRAIREILKKPVAKM  548 (548)
T ss_dssp             ----HHHHHHHHH-TTSCGGGSCTTCEEECSS------CCBCTTSCBCHHHHHHHHHSCC---
T ss_pred             ----HHHHHHHHH-HhccccccccccEEEccC------CCCCCcchhHHHHHHHHHhhhhhcC
Confidence                123444444 7899999999 8998765      4999999999999999999888764

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=7.6e-73  Score=618.58  Aligned_cols=492  Identities=23%  Similarity=0.303  Sum_probs=400.3

Q ss_pred             HHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcC
Q 006197           46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS  125 (657)
Q Consensus        46 ~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G  125 (657)
                      ++|.+.++++|+++++.+... ++     +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   77 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG   77 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            578899999999999986410 22     689999999999999999999999999999999999999999999999999


Q ss_pred             CEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHh
Q 006197          126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  205 (657)
Q Consensus       126 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  205 (657)
                      ++++|+++.++.+++.++++.++++++|++....+.+....... .  ..+..+.....             ..+.....
T Consensus        78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~  141 (503)
T 4fuq_A           78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA  141 (503)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence            99999999999999999999999999999987655432221111 1  12333332211             01111111


Q ss_pred             cCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-H
Q 006197          206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E  284 (657)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~  284 (657)
                      .. ..........++++++|+|||||||.||+|++||+++.+.+......+     ++.++|++++.+|++|.+++.. .
T Consensus       142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~  215 (503)
T 4fuq_A          142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS  215 (503)
T ss_dssp             TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred             cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence            11 122233355789999999999999999999999999999988877777     7899999999999999988764 5


Q ss_pred             HHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcc
Q 006197          285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREAS  363 (657)
Q Consensus       285 ~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (657)
                      +.+++.|+++++.+. ++..+++.++  ++|+++++|+++..+.+...                                
T Consensus       216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--------------------------------  261 (503)
T 4fuq_A          216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--------------------------------  261 (503)
T ss_dssp             HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred             HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence            677899999988876 8999999998  89999999999998864211                                


Q ss_pred             hhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCee
Q 006197          364 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE  443 (657)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~  443 (657)
                        ..        ...++++|.+++||+++++++.+.|.+.++.++++.||+||++..++... ......+++|+|+++++
T Consensus       262 --~~--------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~  330 (503)
T 4fuq_A          262 --LT--------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVS  330 (503)
T ss_dssp             --CS--------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCTTCE
T ss_pred             --cc--------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCCCeE
Confidence              00        01124899999999999999999999999999999999999987754333 33444589999999999


Q ss_pred             EEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecCcceeecCCce
Q 006197          444 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE  522 (657)
Q Consensus       444 ~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~  522 (657)
                      ++|+| ++.+ .+++.|+.|||+|+||+++.||+++++.|.+.| .+|||+|||+|++|+||+++++||.||+||+ +|+
T Consensus       331 ~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~  407 (503)
T 4fuq_A          331 ARVTD-PETG-KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGF  407 (503)
T ss_dssp             EEEEC-TTTC-CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTE
T ss_pred             EEEEE-CCCC-CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCE
Confidence            99998 4333 456677899999999999999999999999999 6999999999999999999999999999997 799


Q ss_pred             eeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHH
Q 006197          523 YVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE  599 (657)
Q Consensus       523 ~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  599 (657)
                      +|+|.+||++|.+||+|.+|+|++.++.   +.++++|++.++.        ..        +        .+++++++ 
T Consensus       408 ~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~--------~~--------~--------~~~l~~~l-  462 (503)
T 4fuq_A          408 NVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA--------TI--------D--------EAQVLHGL-  462 (503)
T ss_dssp             EECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C--------HHHHHHHH-
T ss_pred             EECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC--------CC--------C--------HHHHHHHH-
Confidence            9999999999999999999999986543   4788899887643        00        1        12334444 


Q ss_pred             hCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          600 RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       600 ~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                      +++||.|++|+.|+++++.      |+|++||++|++|+++|++.
T Consensus       463 ~~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~  501 (503)
T 4fuq_A          463 DGQLAKFKMPKKVIFVDDL------PRNTMGKVQKNVLRETYKDI  501 (503)
T ss_dssp             BTTBCGGGCCSEEEEESCC------CBCTTSCBCHHHHHHHTTTT
T ss_pred             HhhcccCCCCCEEEEECCC------CCCcccceeHHHHHHHHHHh
Confidence            4789999999999998664      99999999999999988653

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=2.7e-72  Score=632.06  Aligned_cols=524  Identities=16%  Similarity=0.190  Sum_probs=418.6

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ..+++.++|+++++++||++|+++.   +...+..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|
T Consensus        74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l  150 (652)
T 1pg4_A           74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML  150 (652)
T ss_dssp             EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3578899999999999999999985   3333445899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh---------hhhcccccc-ccCceEEEEecCCcHHHHHH
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM  189 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~  189 (657)
                      ||+++|++++|+++.++.+++.++++.++++++|+++....         .+.+..... ...+..+++++......   
T Consensus       151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---  227 (652)
T 1pg4_A          151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI---  227 (652)
T ss_dssp             HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred             HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence            99999999999999999999999999999999999876432         111111110 01345566655321100   


Q ss_pred             HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhh-hhhhcccccCCCCCCcE
Q 006197          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDV  268 (657)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~  268 (657)
                       .........|.+++..... ........++++++|+|||||||.||||++||++++.++.. ....+     ++.++|+
T Consensus       228 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  300 (652)
T 1pg4_A          228 -DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI  300 (652)
T ss_dssp             -CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred             -cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence             0001123467777654321 12233456899999999999999999999999998876643 33344     7889999


Q ss_pred             EEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006197          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (657)
Q Consensus       269 ~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (657)
                      +++.+|++|..+... .+.+|..|+++++++.     ++..+++.|+++++|+++++|+++..|.+....          
T Consensus       301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------  370 (652)
T 1pg4_A          301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK----------  370 (652)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG----------
T ss_pred             EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc----------
Confidence            999999999999854 6788999999999874     789999999999999999999999988642110          


Q ss_pred             HHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC---CceeeeccCCCCCC
Q 006197          343 RIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCG  419 (657)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~~~  419 (657)
                                            ..+        ...+++||.+++||+++++++.+++.+.+|   +++++.||+||+++
T Consensus       371 ----------------------~~~--------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~  420 (652)
T 1pg4_A          371 ----------------------AIE--------GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG  420 (652)
T ss_dssp             ----------------------GTT--------TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSS
T ss_pred             ----------------------ccc--------cCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccccc
Confidence                                  000        012259999999999999999999998887   89999999999998


Q ss_pred             ccccccCC-CccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhccc---cCCccc
Q 006197          420 PTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFH  493 (657)
Q Consensus       420 ~~~~~~~~-~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g--~~~~~gy~~~~~~~~~~~---~~g~~~  493 (657)
                      .++....+ .....+++|+|++|++++|+| +++.  +++.|+.|||+|+|  |+++.|||++++.+.+.|   .+|||+
T Consensus       421 ~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~--~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~  497 (652)
T 1pg4_A          421 FMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF  497 (652)
T ss_dssp             CSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEE
T ss_pred             ceecCCCCCcCccCCccccCcCCCeEEEEC-CCCC--CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEE
Confidence            77665433 234558999999999999999 6665  44556899999999  799999999999887776   389999


Q ss_pred             cCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHH
Q 006197          494 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS  570 (657)
Q Consensus       494 TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~  570 (657)
                      |||+|++|+||+++|+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..      
T Consensus       498 TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~------  570 (652)
T 1pg4_A          498 SGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE------  570 (652)
T ss_dssp             EEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC------
T ss_pred             CCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC------
Confidence            9999999999999999999999998 7999999999999999999999999996543   47999999886530      


Q ss_pred             CCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006197          571 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  648 (657)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~l  648 (657)
                                 ...+    +.++|+++++ +.||.|++|+.|+++++.      |+|++|||+|++|++.+.++++.+
T Consensus       571 -----------~~~~----~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~~~~~~~  626 (652)
T 1pg4_A          571 -----------PSPE----LYAEVRNWVR-KEIGPLATPDVLHWTDSL------PKTRSGKIMRRILRKIAAGDTSNL  626 (652)
T ss_dssp             -----------CCHH----HHHHHHHHHH-HHTCGGGCCSEEEECSCC------CBCTTSCBCHHHHHHHHHTC----
T ss_pred             -----------CCHH----HHHHHHHHHH-HhCCCCcCCeEEEEcCCC------CCCCCccchHHHHHHHHhCCCCCC
Confidence                       1122    2344555554 579999999999997654      999999999999999998776543

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.4e-71  Score=616.77  Aligned_cols=513  Identities=19%  Similarity=0.193  Sum_probs=415.6

Q ss_pred             CCCcCcHHHHHHHHHHc-----CCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCc
Q 006197           38 DSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANC  111 (657)
Q Consensus        38 ~~~~~~i~~~l~~~a~~-----~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-G~~~gd~V~i~~~n~  111 (657)
                      |...+++.++|++++++     +|+++|+++.   ++ .+..+++||+||.++++++|++|++. |+++||+|+++++|+
T Consensus        34 ~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~  109 (570)
T 3c5e_A           34 PAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV  109 (570)
T ss_dssp             CSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSC
T ss_pred             CccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCC
Confidence            44567888999999999     9999999985   32 22347899999999999999999999 999999999999999


Q ss_pred             hhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHh
Q 006197          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (657)
Q Consensus       112 ~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  191 (657)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+.... ...+.++.++.++....       
T Consensus       110 ~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------  181 (570)
T 3c5e_A          110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSC-------  181 (570)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCC-------
T ss_pred             HHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCc-------
Confidence            9999999999999999999999999999999999999999999987766543322 12234455565554210       


Q ss_pred             hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHH--hhhhhhhhcccccCCCCCCcEE
Q 006197          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVY  269 (657)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~--~~~~~~~~~~~~~~~~~~~d~~  269 (657)
                         .....+.+++..... ........++++++|+|||||||.||+|++||+ ++.  ..... ..+     ++.++|++
T Consensus       182 ---~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~  250 (570)
T 3c5e_A          182 ---DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIM  250 (570)
T ss_dssp             ---TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEE
T ss_pred             ---cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceE
Confidence               113356666544322 122234568999999999999999999999999 444  33332 333     78899999


Q ss_pred             EEecChhHHHHHHH-HHHHHhcCcEEEEec---CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 006197          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (657)
Q Consensus       270 l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  345 (657)
                      ++.+|++|.+++.. .+.++..|+++++..   .++..+++.|+++++|+++++|+++..|.+..               
T Consensus       251 ~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------  315 (570)
T 3c5e_A          251 WTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---------------  315 (570)
T ss_dssp             EECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---------------
T ss_pred             EEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---------------
Confidence            99999999999874 677899999999885   38999999999999999999999999886420               


Q ss_pred             HHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCcccccc
Q 006197          346 DALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  425 (657)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~  425 (657)
                                          .+        ...+++||.+++||+++++++.+.+.+.+|+++++.||+||++..++...
T Consensus       316 --------------------~~--------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~  367 (570)
T 3c5e_A          316 --------------------LS--------SYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK  367 (570)
T ss_dssp             --------------------TT--------TCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCT
T ss_pred             --------------------cc--------ccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCc
Confidence                                00        00125899999999999999999999988999999999999987655443


Q ss_pred             CCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEc-----cCCcccccCCCchhhhccccCCccccCceEEE
Q 006197          426 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  500 (657)
Q Consensus       426 ~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~-----g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~  500 (657)
                      . .....+++|+|+++++++|+| +++.  +++.|+.|||+|+     |++++.||+++++.|.+.|.+|||+|||+|++
T Consensus       368 ~-~~~~~~~vG~p~~~~~v~i~d-~~g~--~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~  443 (570)
T 3c5e_A          368 T-MKIKPGYMGTAASCYDVQIID-DKGN--VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIK  443 (570)
T ss_dssp             T-SCCCTTCCCEECTTCCEEEEC-TTSC--BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEE
T ss_pred             c-cccCCCcccccCCCceEEEEC-CCCC--CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEE
Confidence            3 233458999999999999999 6654  4566789999999     99999999999999999999999999999999


Q ss_pred             cCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccH
Q 006197          501 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF  577 (657)
Q Consensus       501 ~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~  577 (657)
                      |+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++...            
T Consensus       444 d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~------------  510 (570)
T 3c5e_A          444 DEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS------------  510 (570)
T ss_dssp             CTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT------------
T ss_pred             cCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC------------
Confidence            999999999999999997 8999999999999999999999999997643   478899998765300            


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006197          578 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  647 (657)
Q Consensus       578 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~  647 (657)
                          ..   .+.+.++|+++++ ..||.|++|+.|+++++.      |+|++||++|++|++++.+.-++
T Consensus       511 ----~~---~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~s~~  566 (570)
T 3c5e_A          511 ----HD---PEQLTKELQQHVK-SVTAPYKYPRKIEFVLNL------PKTVTGKIQRAKLRDKEWKMSGK  566 (570)
T ss_dssp             ----SC---HHHHHHHHHHHHH-HHSCGGGSCSEEEEESCC------CBCTTCCBCHHHHHHHHTC----
T ss_pred             ----cc---hHHHHHHHHHHHH-hhCccccCCcEEEEeccC------CCCCCcCCcHHHHHHHHHhhhhc
Confidence                00   1123345555554 579999999999998664      99999999999999987654433

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=2.3e-72  Score=616.56  Aligned_cols=492  Identities=22%  Similarity=0.269  Sum_probs=325.6

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...|+.++|+++++++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l   74 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG   74 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4679999999999999999999874    3     789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++|+++.++.+++.++++.++++++|++.+....+.... ........++.+++...              .
T Consensus        75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~  139 (509)
T 3ivr_A           75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGSG--------------P  139 (509)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCCS--------------S
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCCc--------------C
Confidence            99999999999999999999999999999999999988766543332 23345556666554211              1


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (657)
                      +.++...............++++++|+|||||||.||+|++||+++.+.+......+     ++.++|++++.+|++|.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  214 (509)
T 3ivr_A          140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT  214 (509)
T ss_dssp             CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred             hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence            222222111222333456789999999999999999999999999999998887776     889999999999999999


Q ss_pred             HHHHHHHHHhcCcE-EEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCC
Q 006197          280 DRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK  358 (657)
Q Consensus       280 g~~~~~~~l~~G~~-~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (657)
                      ++...+.++..|++ +++...++..+++.++++++|+++++|+++..|++...                           
T Consensus       215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------------------------  267 (509)
T 3ivr_A          215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA---------------------------  267 (509)
T ss_dssp             HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred             HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence            99877665544444 44444599999999999999999999999999875320                           


Q ss_pred             CCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCCccccCccCc
Q 006197          359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  437 (657)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~  437 (657)
                               .        ..++++|.++.+|++   +..+.+.+.+ ++++++.||+||++++++.......  ..++|+
T Consensus       268 ---------~--------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~~G~  325 (509)
T 3ivr_A          268 ---------P--------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKSAGR  325 (509)
T ss_dssp             ---------G--------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTSCCE
T ss_pred             ---------c--------cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCcccc
Confidence                     0        011489999999987   7888888887 9999999999999987776544322  256999


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecC--cce
Q 006197          438 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK--KNL  515 (657)
Q Consensus       438 ~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~--~d~  515 (657)
                      |+++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.+.+.|.+|||+|||+|++|++|++++.||.  +|+
T Consensus       326 p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~  402 (509)
T 3ivr_A          326 PLFWRTVAVVD-AEDR--PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKEL  402 (509)
T ss_dssp             ECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-----
T ss_pred             cCCCcEEEEEC-CCCC--CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCccee
Confidence            99999999999 6654  556678999999999999999999999999999999999999999999999999999  999


Q ss_pred             eecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHH
Q 006197          516 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  592 (657)
Q Consensus       516 i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (657)
                      ||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++++|++.++...                .        .+
T Consensus       403 ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~----------------~--------~~  457 (509)
T 3ivr_A          403 IKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI----------------A--------AD  457 (509)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC----------------C--------HH
Confidence            996 8999999999999999999999999987654   468888887764310                0        12


Q ss_pred             HHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          593 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       593 ~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                      +|+++++ ..||.|++|+.|+++++      +|+|++|||+|++|++++++.
T Consensus       458 ~l~~~l~-~~L~~~~~P~~i~~v~~------lP~t~~GKidr~~Lr~~~~~~  502 (509)
T 3ivr_A          458 ALAEFVA-SLIARYKKPKHVVFVEA------LPKDAKGAIDRAAVKTAHGQE  502 (509)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHHHHHH-hhCcccCCCcEEEEecC------CCCCCCCCccHHHHHHHHhhc
Confidence            3444443 68999999999998765      499999999999999998764

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=7.1e-72  Score=628.78  Aligned_cols=536  Identities=18%  Similarity=0.190  Sum_probs=416.6

Q ss_pred             CCC-CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchh
Q 006197           36 SVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQ  113 (657)
Q Consensus        36 ~~~-~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~-~~G~~~gd~V~i~~~n~~e  113 (657)
                      +.+ ...+++.++|+++++++||++|+++.   +...+..+++||+||.++++++|++|+ ++|+++||+|+++++|+++
T Consensus        75 wf~~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e  151 (663)
T 1ry2_A           75 WFLNGQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE  151 (663)
T ss_dssp             BSTTCEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH
T ss_pred             cCCCCCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH
Confidence            444 33578999999999999999999985   332344589999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhh--------hhccccccccCceEEEEecCCcHH
Q 006197          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAE  185 (657)
Q Consensus       114 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~  185 (657)
                      +++++|||+++|++++|+++.++.+++.++|+.++++++|+++.....        .........+.++.+++++.....
T Consensus       152 ~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~  231 (663)
T 1ry2_A          152 AIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP  231 (663)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCS
T ss_pred             HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCC
Confidence            999999999999999999999999999999999999999998764321        111111122345566666532100


Q ss_pred             HHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhh-hhhhcccccCCCC
Q 006197          186 QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMT  264 (657)
Q Consensus       186 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~  264 (657)
                      .   ..........|.+++.... ...+.....++++++|+|||||||.||||++||++++.++.. ....+     ++.
T Consensus       232 ~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~  302 (663)
T 1ry2_A          232 S---VAFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTH  302 (663)
T ss_dssp             S---CCCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCC
T ss_pred             c---cccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCC
Confidence            0   0000112346777765432 222334456899999999999999999999999998876643 33334     789


Q ss_pred             CCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006197          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (657)
Q Consensus       265 ~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~  338 (657)
                      ++|++++..|++|..+... .+.+|..|+++++++.     ++..+++.|+++++|+++++|+++..|.+....      
T Consensus       303 ~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------  376 (663)
T 1ry2_A          303 QEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS------  376 (663)
T ss_dssp             SSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT------
T ss_pred             CCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc------
Confidence            9999999999999999854 6788999999999864     689999999999999999999999887532100      


Q ss_pred             hHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC---CceeeeccCC
Q 006197          339 PLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLT  415 (657)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~t  415 (657)
                                                ..+.        ..+++||.+++||+++++++.+++.+.+|   +++++.||+|
T Consensus       377 --------------------------~~~~--------~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T  422 (663)
T 1ry2_A          377 --------------------------YIEN--------HSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT  422 (663)
T ss_dssp             --------------------------SSSS--------CCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCT
T ss_pred             --------------------------cccc--------CCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCc
Confidence                                      0000        11258999999999999999999999887   8999999999


Q ss_pred             CCCCccccccC--CCccccCccCcCccCeeEEEeecC-CCCCCCCCC-CCCceEEEcc--CCcccccCCCchhhhccc--
Q 006197          416 ETCGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI--  487 (657)
Q Consensus       416 E~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~iv~~~-~~~~~~~~~-~~~GEl~v~g--~~~~~gy~~~~~~~~~~~--  487 (657)
                      |+++.++....  ......+++|.|++|++++|+| + ++.  +++. |+.|||+++|  |+++.|||++++.+.+.|  
T Consensus       423 E~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~--~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~  499 (663)
T 1ry2_A          423 ESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGE--ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLN  499 (663)
T ss_dssp             TTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTT--CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTS
T ss_pred             cccCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCC--cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhc
Confidence            99987666543  2234568999999999999999 5 544  3334 6799999999  589999999999888876  


Q ss_pred             -cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhh
Q 006197          488 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEED  563 (657)
Q Consensus       488 -~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~  563 (657)
                       .+|||+|||+|++|+||+++|+||.||+||+ +|++|++.+||++|.+||+|.+|+|++.+++   +.++|+|++.++.
T Consensus       500 ~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~  578 (663)
T 1ry2_A          500 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKS  578 (663)
T ss_dssp             SSTTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC---
T ss_pred             CCCCEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCC
Confidence             3899999999999999999999999999997 7999999999999999999999999997653   5799999998753


Q ss_pred             HHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          564 TKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                      ...     ..        .+. ..+.+.++|+++++ +.||.|++|+.|+++++.      |+|++||++|++|++.+.+
T Consensus       579 ~~~-----~~--------~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~~  637 (663)
T 1ry2_A          579 SWS-----TA--------TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDL------PKTRSGKIMRRILRKILAG  637 (663)
T ss_dssp             -----------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCC------CBCTTSCBCHHHHHHSCC-
T ss_pred             ccc-----cc--------cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCC------CCCCccCchHHHHHHHHcC
Confidence            100     00        000 00023445555555 579999999999997654      9999999999999999987


Q ss_pred             HHHHH
Q 006197          644 EIDQL  648 (657)
Q Consensus       644 ~i~~l  648 (657)
                      +++.+
T Consensus       638 ~~~~~  642 (663)
T 1ry2_A          638 ESDQL  642 (663)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            65544

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.4e-71  Score=618.01  Aligned_cols=480  Identities=20%  Similarity=0.185  Sum_probs=317.9

Q ss_pred             CCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006197           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (657)
Q Consensus        37 ~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~  116 (657)
                      ..+...+++++|+++++++||++|+++.    +     +++||+||.++++++|++|+++|+++||+|+++++|++++++
T Consensus        70 ~~~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~  140 (570)
T 4gr5_A           70 RAPAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVV  140 (570)
T ss_dssp             CCCCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred             cCCccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence            3455779999999999999999999875    3     689999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (657)
Q Consensus       117 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (657)
                      ++|||+++|++++|+++.++.+++.++++.++++++|++......+.        ....++..+...             
T Consensus       141 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~-------------  199 (570)
T 4gr5_A          141 ALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT--------GTTTLYVEDEAA-------------  199 (570)
T ss_dssp             HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC--------SSEEEECCC----------------
T ss_pred             HHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc--------CCcceeeecccc-------------
Confidence            99999999999999999999999999999999999999987554321        111222111100             


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                               .............++++++|+|||||||.||+|++||+++.+.+... ..+     ++.++|++++.+|++
T Consensus       200 ---------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~  264 (570)
T 4gr5_A          200 ---------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVS  264 (570)
T ss_dssp             -------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTT
T ss_pred             ---------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCcc
Confidence                     00011122234578999999999999999999999999998776552 222     688999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197          277 HILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM  353 (657)
Q Consensus       277 ~~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (657)
                      |..+....+.++..|+++++.+.   ++..+++.|+++++|++.++|+++..|.+....                     
T Consensus       265 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------------  323 (570)
T 4gr5_A          265 WDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---------------------  323 (570)
T ss_dssp             SSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG---------------------
T ss_pred             HHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh---------------------
Confidence            87776677888999999998863   889999999999999999999999988653110                     


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC---c
Q 006197          354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M  429 (657)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---~  429 (657)
                                              .+++||.+++||++++++..+.+.+.+ ++.+++.||+||+++.++......   .
T Consensus       324 ------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~  379 (570)
T 4gr5_A          324 ------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLS  379 (570)
T ss_dssp             ------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTT
T ss_pred             ------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccC
Confidence                                    114899999999999999998888876 889999999999998776554322   2


Q ss_pred             cccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cC--------CccccCceEEE
Q 006197          430 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIGQI  500 (657)
Q Consensus       430 ~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~--------g~~~TGDl~~~  500 (657)
                      ....++|+|+++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.|.+.| .+        |||+|||+|++
T Consensus       380 ~~~~~iG~p~~~~~v~i~d-~~~~--~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~  456 (570)
T 4gr5_A          380 GTALPIGVPLAGKRAYVLD-DDLK--PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARR  456 (570)
T ss_dssp             SSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEE
T ss_pred             CCccccceeeCCCEEEEEC-CCCC--CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEE
Confidence            2336799999999999999 6654  55567899999999999999999999999988 33        79999999999


Q ss_pred             cCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccH
Q 006197          501 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF  577 (657)
Q Consensus       501 ~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~  577 (657)
                      |+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++..+...            
T Consensus       457 d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~------------  523 (570)
T 4gr5_A          457 RADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP------------  523 (570)
T ss_dssp             CTTSCEEEEEC---------------------------------------------------------------------
T ss_pred             CCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC------------
Confidence            999999999999999997 8999999999999999999999999997643   478888887653200            


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006197          578 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  640 (657)
Q Consensus       578 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~  640 (657)
                                 ...++|+++++ ++||.|++|+.++++++      +|+|++|||+|++|++.
T Consensus       524 -----------~~~~~l~~~l~-~~l~~~~~P~~i~~v~~------lP~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          524 -----------PDAAELRRHVA-EALPAYMVPVECVPVDE------LPRTPNGKLDRRALTGS  568 (570)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             -----------cCHHHHHHHHH-hhCccccCCcEEEEccc------CCCCCCcCcchHhhhcc
Confidence                       01233444444 68999999999998765      49999999999999864

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=4.5e-71  Score=606.36  Aligned_cols=487  Identities=18%  Similarity=0.209  Sum_probs=405.5

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      .++.++|+++|+++|+++|+++.    +     +++||+||.++++++|++|++. |.++|++|+++++|++++++++||
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA   71 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG   71 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence            37899999999999999999874    3     7899999999999999999985 889999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|+++.++.+++.++++.++++++|++.........      .                      ......+
T Consensus        72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------~----------------------~~~~~~~  123 (511)
T 3e7w_A           72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------Q----------------------QIQTVSA  123 (511)
T ss_dssp             HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------C----------------------SSCEEEH
T ss_pred             HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------c----------------------ccceecH
Confidence            99999999999999999999999999999999997653221100      0                      0112344


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (657)
                      .++...............++++++|+|||||||.||+|++||+++.+.+......+     ++.++|++++.+|++|.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  198 (511)
T 3e7w_A          124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS  198 (511)
T ss_dssp             HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred             hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence            45554332222233345788999999999999999999999999999988877766     7899999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG  356 (657)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (657)
                      +...+.++..|+++++.+.    ++..+++.++++++|++.++|+++..+.+...                         
T Consensus       199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  253 (511)
T 3e7w_A          199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG-------------------------  253 (511)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred             HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence            8888889999999998864    78999999999999999999999988763210                         


Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC----ccc
Q 006197          357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MCM  431 (657)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~----~~~  431 (657)
                               ..        ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......    ...
T Consensus       254 ---------~~--------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~  316 (511)
T 3e7w_A          254 ---------FS--------QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSE  316 (511)
T ss_dssp             ---------CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCS
T ss_pred             ---------cc--------cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCC
Confidence                     00        01125899999999999999999999988 899999999999998776544322    223


Q ss_pred             cCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc--cCC--ccccCceEEEcCCCcEE
Q 006197          432 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNGVVK  507 (657)
Q Consensus       432 ~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~--~~g--~~~TGDl~~~~~~G~l~  507 (657)
                      ..++|.|+++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.|.+.|  .+|  ||+|||+|++ +||+++
T Consensus       317 ~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~  392 (511)
T 3e7w_A          317 SLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIF  392 (511)
T ss_dssp             SCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEE
T ss_pred             cCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEE
Confidence            36799999999999999 6654  55667899999999999999999999999998  344  7999999999 599999


Q ss_pred             EEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccH
Q 006197          508 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  584 (657)
Q Consensus       508 i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (657)
                      ++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.++..          .      .. 
T Consensus       393 ~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------~~-  454 (511)
T 3e7w_A          393 CQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF----------E------KE-  454 (511)
T ss_dssp             EEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC----------S------SH-
T ss_pred             EEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc----------c------ch-
Confidence            99999999997 8999999999999999999999999986543   47899998876431          0      11 


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          585 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       585 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                         ..+.+.|+++++ ++||.|++|+.++++++      +|+|++|||+|++|++++.+.
T Consensus       455 ---~~~~~~l~~~l~-~~L~~~~~P~~~~~v~~------lP~t~~GKi~R~~L~~~~~~~  504 (511)
T 3e7w_A          455 ---FQLTSAIKKELA-ASLPAYMIPRKFIYQDH------IQMTANGKIDRKRIGEEVLVR  504 (511)
T ss_dssp             ---HHHHHHHHHHHH-HHSCGGGSCSEEEECSC------CCBCTTSCBCHHHHHHHHHHH
T ss_pred             ---hhHHHHHHHHHH-hhCchhhCCeeEEEecc------CCCCCCcCccHHHHHhHHhhh
Confidence               123344555554 57999999999999765      499999999999999988753

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=2e-71  Score=609.62  Aligned_cols=488  Identities=18%  Similarity=0.199  Sum_probs=399.9

Q ss_pred             CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (657)
Q Consensus        42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~  121 (657)
                      .+|.++|+++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~   71 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC   71 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            37899999999999999999975   3      68999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006197          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (657)
Q Consensus       122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (657)
                      +++|++++|+++.++.+++.++++.++++++|++.......        ... .++..+                  .+.
T Consensus        72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~  124 (512)
T 3fce_A           72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK  124 (512)
T ss_dssp             HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred             HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence            99999999999999999999999999999999975432110        001 111110                  111


Q ss_pred             HHHhc-CccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197          202 EFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (657)
Q Consensus       202 ~l~~~-~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (657)
                      .+... ......+.....++++++|+|||||||.||+|++||+++.+.+......+     ++.++|++++.+|++|.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  199 (512)
T 3fce_A          125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS  199 (512)
T ss_dssp             HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred             hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence            11111 11122223345789999999999999999999999999999988877766     7899999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG  356 (657)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (657)
                      +...+.++..|+++++.+.    ++..+++.++++++|++.++|+++..++....                         
T Consensus       200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  254 (512)
T 3fce_A          200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS-------------------------  254 (512)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred             HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence            8888889999999999874    88999999999999999999999988753210                         


Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC----ccc
Q 006197          357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MCM  431 (657)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~----~~~  431 (657)
                               ..        ...++++|.+++||+++++++.+++.+.+ ++++++.||+||+++.++......    ...
T Consensus       255 ---------~~--------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~  317 (512)
T 3fce_A          255 ---------FS--------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYK  317 (512)
T ss_dssp             ---------CS--------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCS
T ss_pred             ---------cc--------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccC
Confidence                     00        01225899999999999999999999988 899999999999998777554432    123


Q ss_pred             cCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc----CCccccCceEEEcCCCcEE
Q 006197          432 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNGVVK  507 (657)
Q Consensus       432 ~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~----~g~~~TGDl~~~~~~G~l~  507 (657)
                      ..++|.|+++++++++| +++.  +++.|+.|||+++||+++.|||++++.+.+.|.    +|||+|||+|++ ++|+++
T Consensus       318 ~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~  393 (512)
T 3fce_A          318 SLPVGYCKSDCRLLIMK-EDGT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLF  393 (512)
T ss_dssp             SCCCEEECTTCEEEEEC-SSSC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEE
T ss_pred             CCccccccCCcEEEEEC-CCCC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEE
Confidence            47899999999999999 6654  455678999999999999999999999999883    569999999999 799999


Q ss_pred             EEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccH
Q 006197          508 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  584 (657)
Q Consensus       508 i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (657)
                      +.||.||+||+ +|++|+|.+||+.|.+||+|.+|+|++.++.   +.++|+|++.++..          .      .. 
T Consensus       394 i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------~~-  455 (512)
T 3fce_A          394 YNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF----------E------KE-  455 (512)
T ss_dssp             EEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC----------S------SH-
T ss_pred             EecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc----------c------ch-
Confidence            99999999998 8999999999999999999999999986543   47888988876420          0      01 


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          585 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       585 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                         ..+.+.|+++++ ++||.|++|+.++++++      +|+|++|||+|++|++.|+++
T Consensus       456 ---~~~~~~l~~~l~-~~L~~~~~P~~~~~~~~------lP~t~~GKi~R~~L~~~~~~~  505 (512)
T 3fce_A          456 ---FKLTSAIKKELN-ERLPNYMIPRKFMYQSS------IPMTPNGKVDRKKLLSEVTAL  505 (512)
T ss_dssp             ---HHHHHHHHHHHH-TTSCGGGSCSEEEECSC------CCBCTTSSBCHHHHHHHHHC-
T ss_pred             ---hhhHHHHHHHHH-hhCchhcCCeEEEEecc------cCCCCCcChHHHHHHhhhhhc
Confidence               123345566665 78999999999998765      499999999999999998764

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.5e-70  Score=605.12  Aligned_cols=503  Identities=21%  Similarity=0.218  Sum_probs=397.0

Q ss_pred             CCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006197           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (657)
Q Consensus        37 ~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~  116 (657)
                      .|..++++.++|+++++ +|+++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus        19 ~p~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~   88 (529)
T 2v7b_A           19 PPALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPV   88 (529)
T ss_dssp             ---CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHH
T ss_pred             CccceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHH
Confidence            34567789999999999 9999999864    2     589999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCc-eEEEEecCCcHHHHHHHhhCCc
Q 006197          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI  195 (657)
Q Consensus       117 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~  195 (657)
                      ++|||+++|++++|+++.++.+++.++++.++++++|++......+..... ..... ..++..+.....        ..
T Consensus        89 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~  159 (529)
T 2v7b_A           89 AFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRESE--------PR  159 (529)
T ss_dssp             HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------
T ss_pred             HHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEecccccc--------cc
Confidence            999999999999999999999999999999999999999876654433211 11122 344443332110        00


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhH-HHhhhhhhhhcccccCCCCCCcEEEEecC
Q 006197          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (657)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (657)
                      ....+.++..... .........++++++++|||||||.||+|++||+++ ..........+     ++.++|++++.+|
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p  233 (529)
T 2v7b_A          160 LAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAK  233 (529)
T ss_dssp             CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSC
T ss_pred             cccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeec
Confidence            1124556554321 122233457899999999999999999999999999 56555544444     7889999999999


Q ss_pred             hhHHHHHHH-HHHHHhcCcEEEEec--CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006197          275 LAHILDRVI-EEYFFRRGASVGYYH--GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLA  351 (657)
Q Consensus       275 l~~~~g~~~-~~~~l~~G~~~v~~~--~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (657)
                      ++|.+++.. .+.++..|+++++.+  .++..+++.++++++|+++++|+++..+.+...                    
T Consensus       234 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------  293 (529)
T 2v7b_A          234 LFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN--------------------  293 (529)
T ss_dssp             TTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT--------------------
T ss_pred             HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc--------------------
Confidence            999999875 567899999999873  389999999999999999999999988763210                    


Q ss_pred             HhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccc
Q 006197          352 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  431 (657)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~  431 (657)
                                ....            ...++|.+++||+++++++.+.+.+.+|+++++.||+||++..++.+.... ..
T Consensus       294 ----------~~~~------------~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~  350 (529)
T 2v7b_A          294 ----------LPAR------------ADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-VE  350 (529)
T ss_dssp             ----------CCCG------------GGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-CC
T ss_pred             ----------cccc------------cCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-Cc
Confidence                      0000            013799999999999999999999988999999999999977666554433 34


Q ss_pred             cCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEec
Q 006197          432 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR  511 (657)
Q Consensus       432 ~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR  511 (657)
                      .+++|.|+++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.+.+.|.+|||+|||+|+++++|++++.||
T Consensus       351 ~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR  427 (529)
T 2v7b_A          351 YGTTGRPVPGYEIELRD-EAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGR  427 (529)
T ss_dssp             TTSCCEECTTCEEEEEC-TTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEE
T ss_pred             cCCcccCCCCCEEEEEC-CCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCc
Confidence            48999999999999999 6654  45567899999999999999999999999999999999999999999999999999


Q ss_pred             CcceeecCCceeeccHHHHHHHhcCcccceEEEEecCC--CCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHH
Q 006197          512 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  589 (657)
Q Consensus       512 ~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (657)
                      .||+||+ +|++|+|.+||++|.+||+|.+|+|++...  .+.++|+|++.++..                 .....   
T Consensus       428 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~-----------------~~~~~---  486 (529)
T 2v7b_A          428 SDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA-----------------PSEIL---  486 (529)
T ss_dssp             GGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHHH---
T ss_pred             cCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC-----------------cchhH---
Confidence            9999997 899999999999999999999999999722  247889998876420                 01111   


Q ss_pred             HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197          590 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  639 (657)
Q Consensus       590 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~  639 (657)
                       .++|+++++ +.||.|++|+.|+++++.      |+|++||++|++|++
T Consensus       487 -~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          487 -AEELKAFVK-DRLAPHKYPRDIVFVDDL------PKTATGKIQRFKLRE  528 (529)
T ss_dssp             -HHHHHHHHH-TTSCTTTSCSEEEEESCC------CBCTTSCBCHHHHHC
T ss_pred             -HHHHHHHHH-hhcchhhCCeEEEEeccC------CCCCccchhHHhHhh
Confidence             234555554 789999999999998764      999999999999975

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1.9e-70  Score=614.43  Aligned_cols=502  Identities=18%  Similarity=0.179  Sum_probs=412.7

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...++.++|+++++  ||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l   93 (617)
T 3rg2_A           25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF   93 (617)
T ss_dssp             CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence            35789999999987  999999975   3      789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh----hhhccccccccCceEEEEecCCcHHHHHHHhhCCc
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (657)
                      ||+++|++++|+++.++.+++.++++.+++++++++.....    ...............+........           
T Consensus        94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  162 (617)
T 3rg2_A           94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-----------  162 (617)
T ss_dssp             HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred             HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence            99999999999999999999999999999999999876541    111111112233444444443221           


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh
Q 006197          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (657)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  275 (657)
                        ..+.+..... .......+..++++++|+|||||||.||||+++|+++.+.+......+     ++.++|++++.+|+
T Consensus       163 --~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~  234 (617)
T 3rg2_A          163 --HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA  234 (617)
T ss_dssp             --TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred             --cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence              1233333322 122233445789999999999999999999999999999998887777     78999999999999


Q ss_pred             hHHHHHHH--HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006197          276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAW  352 (657)
Q Consensus       276 ~~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (657)
                      +|.+++..  .+.++..|+++++.+. ++..++..++++++|++.++|+++..+.+........                
T Consensus       235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------------  298 (617)
T 3rg2_A          235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR----------------  298 (617)
T ss_dssp             TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT----------------
T ss_pred             hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc----------------
Confidence            99999874  6778999999999875 8899999999999999999999999887643311000                


Q ss_pred             hhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCcccc
Q 006197          353 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  432 (657)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~  432 (657)
                                              ..+++||.+++||+++++++.+++.+.++++++|.||+||++..++..........
T Consensus       299 ------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  354 (617)
T 3rg2_A          299 ------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKII  354 (617)
T ss_dssp             ------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHH
T ss_pred             ------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccc
Confidence                                    01248999999999999999999999899999999999999866554433333334


Q ss_pred             CccCcCc-cCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEe
Q 006197          433 GTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID  510 (657)
Q Consensus       433 ~~~G~~~-~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~G  510 (657)
                      .++|.|+ ++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.|.+.| .++||+|||+|++++||.++++|
T Consensus       355 ~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~G  431 (617)
T 3rg2_A          355 HTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQG  431 (617)
T ss_dssp             HCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred             cCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEe
Confidence            6889997 788999998 6654  55667899999999999999999999999999 79999999999999999999999


Q ss_pred             cCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHH
Q 006197          511 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  587 (657)
Q Consensus       511 R~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (657)
                      |.||+||+ +|++|+|.+||+.|.+||+|.+|+|++.++.   +.++++++..+..                  ..    
T Consensus       432 R~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------~~----  488 (617)
T 3rg2_A          432 REKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------------------RA----  488 (617)
T ss_dssp             ECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH----
T ss_pred             ecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------------------CH----
Confidence            99999997 7999999999999999999999999986543   4788888877632                  11    


Q ss_pred             HHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006197          588 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  647 (657)
Q Consensus       588 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~  647 (657)
                          .++++++++..||.|++|..+++++.      +|+|++|||||++|++.+......
T Consensus       489 ----~~l~~~l~~~~lp~~~vP~~~~~v~~------lP~t~~GKidR~~L~~~~~~~~~~  538 (617)
T 3rg2_A          489 ----VQVRRFLREQGIAEFKLPDRVECVDS------LPLTAVGKVDKKQLRQWLASRASA  538 (617)
T ss_dssp             ----HHHHHHHHTTTCCGGGSCSEEEECSC------CCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHhCCCccccCCcEEEEecc------cCCCCCCCCcHHHHHHHHhccccc
Confidence                23444444337999999999999765      499999999999999998876554

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1e-70  Score=614.03  Aligned_cols=475  Identities=19%  Similarity=0.149  Sum_probs=385.8

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...++.++|+++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l   95 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL   95 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3568999999999999999999975   3      689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++|++|.++.+++.++++.+++++++++........        ....+ ...                   
T Consensus        96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~-~~~-------------------  147 (620)
T 4dg8_A           96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV-PVR-------------------  147 (620)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE-EGG-------------------
T ss_pred             HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee-eec-------------------
Confidence            99999999999999999999999999999999997655332110        00000 000                   


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (657)
                        ..  .............++++++|+|||||||.||||+++|+++.+.+.. ...+     .+.++|++++.+|++|..
T Consensus       148 --~~--~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~  217 (620)
T 4dg8_A          148 --HL--PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDA  217 (620)
T ss_dssp             --GC--CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTH
T ss_pred             --cC--CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHH
Confidence              00  0001111223346899999999999999999999999999887765 3333     788999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG  356 (657)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (657)
                      ++...+.++..|+++++.+.   ++..+.+.++++++|+++++|+++..|.+...                         
T Consensus       218 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------------------------  272 (620)
T 4dg8_A          218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-------------------------  272 (620)
T ss_dssp             HHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------------------------
T ss_pred             HHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------------------------
Confidence            98888899999999998752   89999999999999999999999998764200                         


Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC---cccc
Q 006197          357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MCMV  432 (657)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---~~~~  432 (657)
                                          ..+++||.+++||++++++..+.+.+.+ +++++|.||+||++.+++......   ....
T Consensus       273 --------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~  332 (620)
T 4dg8_A          273 --------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDD  332 (620)
T ss_dssp             --------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSS
T ss_pred             --------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCC
Confidence                                0114899999999999998888776655 889999999999998776543322   2334


Q ss_pred             CccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccC--------CccccCceEEEcCCC
Q 006197          433 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILPNG  504 (657)
Q Consensus       433 ~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~--------g~~~TGDl~~~~~~G  504 (657)
                      .++|+|+++++++|+| +++. ..++.|+.|||+|+|++++.||+++++.|.+.|.+        +||+|||+|++++||
T Consensus       333 ~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG  410 (620)
T 4dg8_A          333 IPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQG  410 (620)
T ss_dssp             CCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTS
T ss_pred             CCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCC
Confidence            7899999999999999 6554 33556789999999999999999999999999943        799999999999999


Q ss_pred             cEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCCC--eEEEEEecChhhHHHHHHHCCCCccHHHHhc
Q 006197          505 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS--MLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  582 (657)
Q Consensus       505 ~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~~--~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  582 (657)
                      +|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++..  .++++++...+.                  .
T Consensus       411 ~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~------------------~  471 (620)
T 4dg8_A          411 RLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA------------------S  471 (620)
T ss_dssp             CEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC------------------C
T ss_pred             eEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH------------------H
Confidence            99999999999998 79999999999999999999999999865443  445555433221                  0


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006197          583 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  646 (657)
Q Consensus       583 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~  646 (657)
                          .    +.+     ++.||.|++|+.+++++.      +|+|++|||+|++|+++|.+.++
T Consensus       472 ----~----~~l-----~~~Lp~y~~P~~~~~v~~------lP~t~~GKidR~~L~~~~~~~~~  516 (620)
T 4dg8_A          472 ----P----QAL-----LRQLPTWQRPHACVRVEA------LPLTAHGKLDRAALLRRLEEPLE  516 (620)
T ss_dssp             ----C----HHH-----HHHSCGGGSCSEEEECSS------CCCC----CCHHHHHHHTCSCC-
T ss_pred             ----H----HHH-----HHhChhhcCCcEEEEECc------CCCCcccCHhHHHHhhccccccc
Confidence                0    111     246999999999999765      49999999999999988765443

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.2e-70  Score=605.02  Aligned_cols=494  Identities=16%  Similarity=0.142  Sum_probs=394.6

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ++.++.++|+++++++|+++|+.+.    +     +++||+||.++++++|.+|++.|+++||+|+++++|++++++++|
T Consensus         2 ~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~l   72 (521)
T 3l8c_A            2 SLKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFV   72 (521)
T ss_dssp             CCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3578999999999999999999875    3     689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++|+++.++.+++.++++.++++++|++.+....+.        .. .++                     .
T Consensus        73 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~~~---------------------~  122 (521)
T 3l8c_A           73 ALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-SLV---------------------S  122 (521)
T ss_dssp             HHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-EEE---------------------E
T ss_pred             HHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-ccc---------------------c
Confidence            99999999999999999999999999999999999876433211        11 111                     1


Q ss_pred             HHHHHhcC--ccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006197          200 WDEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (657)
Q Consensus       200 ~~~l~~~~--~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~  277 (657)
                      +.++....  ...........++++++|+|||||||.||+|++||+++.+.+.......   ...+..++++++..|++|
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~  199 (521)
T 3l8c_A          123 LSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSF  199 (521)
T ss_dssp             HHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTS
T ss_pred             hhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccH
Confidence            11111110  0111223345789999999999999999999999999998777654431   126789999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197          278 ILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM  353 (657)
Q Consensus       278 ~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (657)
                      ..+....+.++..|+++++.+.    ++..+++.+.++++|++.++|+++..+.....                      
T Consensus       200 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------  257 (521)
T 3l8c_A          200 DLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------  257 (521)
T ss_dssp             GGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT----------------------
T ss_pred             HHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc----------------------
Confidence            8888778888999999998764    78999999999999999999999987653110                      


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC----
Q 006197          354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  428 (657)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~----  428 (657)
                                  ..        ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......    
T Consensus       258 ------------~~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  317 (521)
T 3l8c_A          258 ------------FC--------QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVD  317 (521)
T ss_dssp             ------------CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHH
T ss_pred             ------------cc--------cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccccc
Confidence                        00        01125899999999999999999998888 899999999999998776544322    


Q ss_pred             ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc----cCCccccCceEEEcCCC
Q 006197          429 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILPNG  504 (657)
Q Consensus       429 ~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~----~~g~~~TGDl~~~~~~G  504 (657)
                      ....+++|+|+++++++|+| +++.  +++.|+.|||+|+||+++.|||++++.+.+.|    .+|||+|||+|++|++|
T Consensus       318 ~~~~~~vG~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG  394 (521)
T 3l8c_A          318 NYTRLPIGYPKPDSPTYIID-EDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDN  394 (521)
T ss_dssp             HCSSCEEEEECTTSCEEEEC-TTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSS
T ss_pred             CCCccccccccCCCEEEEEC-CCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCC
Confidence            12346899999999999999 6654  45567899999999999999999999999988    35799999999999999


Q ss_pred             cEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC----CeEEEEEecChhhHHHHHHHCCCCccHHHH
Q 006197          505 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  580 (657)
Q Consensus       505 ~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~----~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  580 (657)
                      ++++.||.||+||+ +|++|+|.+||++|.+||+|.+|+|++..+.    +.++|+|++.++....              
T Consensus       395 ~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~--------------  459 (521)
T 3l8c_A          395 ILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKER--------------  459 (521)
T ss_dssp             CEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGG--------------
T ss_pred             eEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccc--------------
Confidence            99999999999997 7999999999999999999999999986532    4788999988753100              


Q ss_pred             hccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          581 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       581 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                       .+.  ...+.+.|+++++ ++||.|++|+.|+++++.      |+|++|||+|++|+++++++-
T Consensus       460 -~~~--~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GKidr~~L~~~~~~~~  514 (521)
T 3l8c_A          460 -FDR--ELELTKAIKASVK-DHMMSYMMPSKFLYRDSL------PLTPNGKIDIKTLINEVNNRE  514 (521)
T ss_dssp             -CSS--HHHHHHHHHHHSG-GGSCGGGSCSEEEECSSC------CBCTTSSBCHHHHHHHTC---
T ss_pred             -ccc--chhhHHHHHHHHH-hhCccccCCeEEEEeccc------CCCCCcCccHHHHhhhhhcCC
Confidence             000  1123455666665 789999999999997654      999999999999999987643

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2.3e-70  Score=606.27  Aligned_cols=475  Identities=20%  Similarity=0.225  Sum_probs=390.7

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...++.++|.++++++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        37 ~~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  107 (563)
T 1amu_A           37 RDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL  107 (563)
T ss_dssp             TTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3568999999999999999999874    3     689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++|+++.++.+++.++++.++++++|++......+....     ....+..+....                
T Consensus       108 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~----------------  166 (563)
T 1amu_A          108 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT----------------  166 (563)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST----------------
T ss_pred             HHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh----------------
Confidence            99999999999999999999999999999999999987655432211     111222222210                


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (657)
                      +    ... .......+..++++++|+|||||||.||||++||+++.+.+......+     ++.++|++++.+|++|..
T Consensus       167 ~----~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  236 (563)
T 1amu_A          167 I----KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA  236 (563)
T ss_dssp             T----TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred             h----ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHH
Confidence            0    000 111112334678999999999999999999999999998887766665     789999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q 006197          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM  355 (657)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (657)
                      ++...+.++..|+++++.+.    ++..+++.++++++|+++++|+++..+...                          
T Consensus       237 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------------  290 (563)
T 1amu_A          237 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------------------------  290 (563)
T ss_dssp             HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------------------------
T ss_pred             HHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------------------------
Confidence            88777889999999998764    789999999999999999999998765310                          


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC--ccccC
Q 006197          356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCMVG  433 (657)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~--~~~~~  433 (657)
                                            ..+++|.+++||+++++++.+.+.+  .+++++.||+||++..++......  .....
T Consensus       291 ----------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  346 (563)
T 1amu_A          291 ----------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSV  346 (563)
T ss_dssp             ----------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSC
T ss_pred             ----------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCC
Confidence                                  0148999999999999999999977  478999999999998766544322  22347


Q ss_pred             ccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc-------CCccccCceEEEcCCCcE
Q 006197          434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVV  506 (657)
Q Consensus       434 ~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~~~~~G~l  506 (657)
                      ++|+|+++++++|+| +++.  +++.|+.|||+|+||+++.|||++++.|.+.|.       ++||+|||+|++|+||++
T Consensus       347 ~vG~p~~~~~v~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l  423 (563)
T 1amu_A          347 PIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNI  423 (563)
T ss_dssp             CCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCE
T ss_pred             cccceeCCCEEEEEC-CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeE
Confidence            899999999999999 6654  455678999999999999999999999999883       359999999999999999


Q ss_pred             EEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhcc
Q 006197          507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  583 (657)
Q Consensus       507 ~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (657)
                      +++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++..+.                  ..
T Consensus       424 ~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~------------------~~  484 (563)
T 1amu_A          424 EYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------------------PL  484 (563)
T ss_dssp             EEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC------------------CH
T ss_pred             EEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC------------------CH
Confidence            999999999997 8999999999999999999999999987653   4788888876421                  11


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006197          584 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  641 (657)
Q Consensus       584 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~  641 (657)
                              ++|+++++ ++||.|++|+.|+++++.      |+|++||++|++|++.+
T Consensus       485 --------~~l~~~l~-~~L~~y~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~  527 (563)
T 1amu_A          485 --------EQLRQFSS-EELPTYMIPSYFIQLDKM------PLTSNGKIDRKQLPEPD  527 (563)
T ss_dssp             --------HHHHHHHH-HHSCGGGSCSEEEECSSC------CBCTTSSBCGGGSCCCC
T ss_pred             --------HHHHHHHH-hhCchhhCCcEEEEeccc------CCCCCcChhHHhcCCcc
Confidence                    23344443 579999999999997664      99999999999998754

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=9.2e-71  Score=602.88  Aligned_cols=491  Identities=22%  Similarity=0.208  Sum_probs=373.4

Q ss_pred             cHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 006197           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (657)
Q Consensus        43 ~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~  122 (657)
                      ||.++|+++++++||++|+++.   +      +++||+||.++++++|++|++.   +||+|+++++|++++++++|||+
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~   69 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW   69 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence            6778999999999999999875   3      5899999999999999999986   89999999999999999999999


Q ss_pred             hcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcce-eeHH
Q 006197          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSWD  201 (657)
Q Consensus       123 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~  201 (657)
                      ++|++++|+++.++.+++.++++.++++++|++............  ......+..........   ........ ....
T Consensus        70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  144 (501)
T 3ipl_A           70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSNE  144 (501)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred             HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccchh
Confidence            999999999999999999999999999999999876543322111  01111111000000000   00000000 0011


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 006197          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (657)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (657)
                      .................++++++|+|||||||.||+|++||+++.+.+......+     ++.++|++++.+|++|.+++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  219 (501)
T 3ipl_A          145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL  219 (501)
T ss_dssp             -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred             hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence            1111111111122345789999999999999999999999999999988877766     78999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCC
Q 006197          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQR  360 (657)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (657)
                      ...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+....                            
T Consensus       220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------  271 (501)
T 3ipl_A          220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------------------------  271 (501)
T ss_dssp             HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred             HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence            888889999999999876 999999999999999999999999988653110                            


Q ss_pred             CcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC-ccccCccCcCc
Q 006197          361 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVS  439 (657)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~  439 (657)
                                       ...+||.+++||+++++++.+.+.+ +++++++.||+||+++.++...... ....+++|.|+
T Consensus       272 -----------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~  333 (501)
T 3ipl_A          272 -----------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPS  333 (501)
T ss_dssp             -----------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEEC
T ss_pred             -----------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCC
Confidence                             0027899999999999999999987 5999999999999987655443322 33458999999


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecC
Q 006197          440 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  519 (657)
Q Consensus       440 ~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~  519 (657)
                      ++++++|+| ++       .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|++|+++++||.||+||+ 
T Consensus       334 ~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-  403 (501)
T 3ipl_A          334 ANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-  403 (501)
T ss_dssp             TTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEEC-
T ss_pred             CCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEE-
Confidence            999999998 43       235799999999999999999998887 88999999999999999999999999999996 


Q ss_pred             CceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHH
Q 006197          520 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  596 (657)
Q Consensus       520 ~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  596 (657)
                      +|++|+|.+||++|.+||+|.+|+|++.+++   +.++++++...+.                  +.        ++|++
T Consensus       404 ~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~~--------~~l~~  457 (501)
T 3ipl_A          404 GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------SK--------AQLIA  457 (501)
T ss_dssp             SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH--------HHHHH
T ss_pred             CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------CH--------HHHHH
Confidence            8999999999999999999999999986644   3678888765432                  11        23344


Q ss_pred             HHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          597 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       597 ~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                      +++ ++||.|++|+.|+++++.      |+|++|||+|++|++.+.++
T Consensus       458 ~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~l~~~~~~~  498 (501)
T 3ipl_A          458 YLS-KHLAKYKVPKHFEKVDTL------PYTSTGKLQRNKLYREGHHH  498 (501)
T ss_dssp             HHH-HHSCGGGSCSEEEECSSC------C-------------------
T ss_pred             HHH-hhCccccCCCEEEEeccc------CCCCCCCEeHHHHhhccccc
Confidence            443 579999999999997654      99999999999999988764

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.5e-70  Score=646.68  Aligned_cols=540  Identities=24%  Similarity=0.302  Sum_probs=345.4

Q ss_pred             CCCCCCCCceeccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH
Q 006197           16 DGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA   95 (657)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~   95 (657)
                      .+.+..+.+|++......+    +...++.++|+++++++||++|+++.   +..    +++||+||.++++++|++|++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~  107 (979)
T 3tsy_A           39 SNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHK  107 (979)
T ss_dssp             ------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHH
Confidence            3445556677776443333    34579999999999999999999875   322    689999999999999999999


Q ss_pred             cCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceE
Q 006197           96 SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRV  175 (657)
Q Consensus        96 ~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  175 (657)
                      .|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++....+.+......  .. ..
T Consensus       108 ~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~-~~  184 (979)
T 3tsy_A          108 LGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND--DG-VV  184 (979)
T ss_dssp             TTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT--SC-CE
T ss_pred             cCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc--CC-ce
Confidence            9999999999999999999999999999999999999999999999999999999999998876554332211  11 23


Q ss_pred             EEEecCCcHHHHHHHhhCCcceeeHHHHHhcCcc--CCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhh
Q 006197          176 MVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD  253 (657)
Q Consensus       176 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~  253 (657)
                      ++.+++...      .........+.++......  ...+.....++++++|+|||||||.||+|+++|+++.+.+....
T Consensus       185 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  258 (979)
T 3tsy_A          185 IVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV  258 (979)
T ss_dssp             EEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHH
T ss_pred             EEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHH
Confidence            444443211      0011223455555433221  12233346789999999999999999999999999998876643


Q ss_pred             hhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHH
Q 006197          254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIK  331 (657)
Q Consensus       254 ~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~  331 (657)
                      .... ....+.++|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+...
T Consensus       259 ~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  337 (979)
T 3tsy_A          259 DGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE  337 (979)
T ss_dssp             CSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred             Hhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence            3211 0125788999999999999999865 5667999999999876 89999999999999999999999988864311


Q ss_pred             HHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceee
Q 006197          332 KALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQ  410 (657)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~  410 (657)
                                                        ...        ..+++||.+++||+++++++.+++.+.+ ++++++
T Consensus       338 ----------------------------------~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~  375 (979)
T 3tsy_A          338 ----------------------------------TEK--------YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ  375 (979)
T ss_dssp             ----------------------------------GGT--------SCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEE
T ss_pred             ----------------------------------ccC--------CCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEe
Confidence                                              000        1125899999999999999999999988 899999


Q ss_pred             eccCCCCCCcccccc----CCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcc
Q 006197          411 GYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES  486 (657)
Q Consensus       411 ~yG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~  486 (657)
                      .||+||++.+++.+.    .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.|.+.
T Consensus       376 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~  453 (979)
T 3tsy_A          376 GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAATAET  453 (979)
T ss_dssp             CEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHH
T ss_pred             eechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCccccccCChhhhhhh
Confidence            999999998765542    12233458999999999999999 4433 45667789999999999999999999999999


Q ss_pred             c-cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChh
Q 006197          487 I-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEE  562 (657)
Q Consensus       487 ~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~  562 (657)
                      | .+|||+|||+|++|++|+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++
T Consensus       454 f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~  532 (979)
T 3tsy_A          454 IDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD  532 (979)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------------------------------
T ss_pred             ccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCC
Confidence            9 7999999999999999999999999999998 7999999999999999999999999986653   478888887654


Q ss_pred             hHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197          563 DTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  642 (657)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~  642 (657)
                      ...                .        .++|+++++ ++||.|++|+.++++++      +|+|++|||+|++|+++|.
T Consensus       533 ~~~----------------~--------~~~l~~~l~-~~l~~~~~p~~i~~v~~------lP~t~~GKi~r~~L~~~~~  581 (979)
T 3tsy_A          533 SEL----------------S--------EDDVKQFVS-KQVVFYKRINKVFFTES------IPKAPSGKILRKDLRAKLA  581 (979)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCC----------------C--------HHHHHHHHH-HhcccccCCeEEEEeCC------cCcCCCCCeeHHHHHHHHH
Confidence            210                0        123444443 78999999999988765      4999999999999999999


Q ss_pred             HHHHHHHhhh
Q 006197          643 VEIDQLYEKL  652 (657)
Q Consensus       643 ~~i~~ly~~~  652 (657)
                      +.+...|...
T Consensus       582 ~~~~~~~~~~  591 (979)
T 3tsy_A          582 NGLGSGMASV  591 (979)
T ss_dssp             -------CCH
T ss_pred             hhcCCccccc
Confidence            9998888754

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=4.7e-70  Score=596.43  Aligned_cols=476  Identities=25%  Similarity=0.286  Sum_probs=372.0

Q ss_pred             CcCcHHHHHHHHHHcCCC-CCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~-~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      .+.++.+.|.++++++|+ ++|+++.    +     +++||+||.++++++|.+|.     .|++|+++++|++++++++
T Consensus        20 ~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~   85 (505)
T 3nyq_A           20 HMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV   85 (505)
T ss_dssp             ----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred             ccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence            477899999999999887 9999875    3     78999999999999998775     3889999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (657)
                      |||+++|++++|++|.++.+++.++++.++++++|++.+...      .........+ ..+..                
T Consensus        86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~----------------  142 (505)
T 3nyq_A           86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR----------------  142 (505)
T ss_dssp             HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT----------------
T ss_pred             HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc----------------
Confidence            999999999999999999999999999999999999865211      0011111111 11100                


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (657)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (657)
                               .....+.....++++++|+|||||||.||+|++||+++.+.+..+...+     ++.++|++++.+|++|.
T Consensus       143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  208 (505)
T 3nyq_A          143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHV  208 (505)
T ss_dssp             ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSH
T ss_pred             ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHH
Confidence                     0111223345688999999999999999999999999999998887777     78999999999999999


Q ss_pred             HHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG  356 (657)
Q Consensus       279 ~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (657)
                      +++.. .+.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.+.....                     
T Consensus       209 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------  266 (505)
T 3nyq_A          209 HGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE---------------------  266 (505)
T ss_dssp             HHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH---------------------
T ss_pred             HHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch---------------------
Confidence            99875 6778999999998876 888899998 88999999999999998764321100                     


Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccC
Q 006197          357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  436 (657)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G  436 (657)
                                ....+        +++|.+++||+++++++.+++.+.++.++++.||+||+++.++..... ....+++|
T Consensus       267 ----------~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~vG  327 (505)
T 3nyq_A          267 ----------LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADG-EPRAGTVG  327 (505)
T ss_dssp             ----------HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-CCCTTCCC
T ss_pred             ----------hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCC-CCCCCCcc
Confidence                      00011        378999999999999999999998999999999999998776655443 33448999


Q ss_pred             cCccCeeEEEeecCCCCCCCC-CCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecC-c
Q 006197          437 PVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-K  513 (657)
Q Consensus       437 ~~~~~~~~~iv~~~~~~~~~~-~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~-~  513 (657)
                      +|+++++++|+| +++..++. +.|+.|||+|+|++++.||+++++.|.+.| .+|||+|||+|++|+||+++++||. |
T Consensus       328 ~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d  406 (505)
T 3nyq_A          328 VPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKAT  406 (505)
T ss_dssp             EECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSC
T ss_pred             cCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccC
Confidence            999999999999 77765554 447899999999999999999999999999 6999999999999999999999998 5


Q ss_pred             ceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHH
Q 006197          514 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  590 (657)
Q Consensus       514 d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (657)
                      |+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..         ..      .        
T Consensus       407 ~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~---------~~------~--------  462 (505)
T 3nyq_A          407 DLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA---------PP------A--------  462 (505)
T ss_dssp             CCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS---------CC------C--------
T ss_pred             ceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC---------CC------C--------
Confidence            89997 8999999999999999999999999986653   48999999875320         00      0        


Q ss_pred             HHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197          591 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  639 (657)
Q Consensus       591 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~  639 (657)
                      .++|+++++ ++||.|++|+.|+++++.      |+|++|||+|++|++
T Consensus       463 ~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          463 LGTLADHVA-ARLAPHKRPRVVRYLDAV------PRNDMGKIMKRALNR  504 (505)
T ss_dssp             HHHHHHHHH-HHTCGGGSCSEEEECSCC------CC-------------
T ss_pred             HHHHHHHHH-hhCCCCcCccEEEEECCC------CCCCCcCeeHHhhcc
Confidence            123444443 579999999999997654      999999999999986

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=8.9e-69  Score=595.39  Aligned_cols=519  Identities=16%  Similarity=0.137  Sum_probs=319.2

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCC----CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~----~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~  114 (657)
                      ....++.++|+++|+++||++|+++.   ++    .....+++||+||.++++++|++|++.|+ +||+|+++++|++++
T Consensus        17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~   92 (562)
T 3ite_A           17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA   92 (562)
T ss_dssp             -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred             cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence            45678999999999999999999876   32    12234789999999999999999999999 799999999999999


Q ss_pred             HHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCC
Q 006197          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (657)
Q Consensus       115 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (657)
                      ++++|||+++|++++|+++.++.+++.++++.++++++|++.........      .....++.....            
T Consensus        93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~------------  154 (562)
T 3ite_A           93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVEL------PPETKVLDTKNQ------------  154 (562)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCC------CTTCEEEETTCH------------
T ss_pred             HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccccc------Cccceeecccch------------
Confidence            99999999999999999999999999999999999999998765543211      111122221111            


Q ss_pred             cceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcc---cccCCCCCCcEEEE
Q 006197          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVYLS  271 (657)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~---~~~~~~~~~d~~l~  271 (657)
                          .+.+...... .........++++++|+|||||||.||+|++||+++.+.+..+...+.   .....+...+++++
T Consensus       155 ----~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (562)
T 3ite_A          155 ----SFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC  229 (562)
T ss_dssp             ----HHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC
T ss_pred             ----hhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE
Confidence                1222222211 112223446788999999999999999999999999988776544321   11125788899999


Q ss_pred             ecChhHHHHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 006197          272 FLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALK  349 (657)
Q Consensus       272 ~~pl~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (657)
                      ..|+.|..++...+.++..|+++++.+.  .+..+.+.++++++|++.++|+++..+...                    
T Consensus       230 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~--------------------  289 (562)
T 3ite_A          230 LASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV--------------------  289 (562)
T ss_dssp             CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--------------------
T ss_pred             ecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--------------------
Confidence            9999998888778889999999988764  457888999999999999999987664210                    


Q ss_pred             HHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCc
Q 006197          350 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM  429 (657)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~  429 (657)
                                    +            ..+++||.+++||+++++++.+.+.+.+++++++.||+||+++.++.......
T Consensus       290 --------------~------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~  343 (562)
T 3ite_A          290 --------------P------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD  343 (562)
T ss_dssp             --------------G------------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT
T ss_pred             --------------c------------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC
Confidence                          0            01258999999999999999999998889999999999999987777665554


Q ss_pred             cccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCC--ccccCceEEEcCCCcEE
Q 006197          430 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILPNGVVK  507 (657)
Q Consensus       430 ~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g--~~~TGDl~~~~~~G~l~  507 (657)
                      ...+++|+|++++++++++ ++++ .+++.|+.|||+|+||+++.|||++++.+...+.+|  ||+|||+|++|+||+++
T Consensus       344 ~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~  421 (562)
T 3ite_A          344 SDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSIL  421 (562)
T ss_dssp             SCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEE
T ss_pred             CCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEE
Confidence            5558999999999999998 4433 456677899999999999999999999988777777  99999999999999999


Q ss_pred             EEecCcceeecCCceeeccHHHHHHHhcC-cccceEEEEecCCCC---eEEEEEecChhhHHHHHHHCCCCccHHHHhcc
Q 006197          508 IIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  583 (657)
Q Consensus       508 i~GR~~d~i~~~~G~~v~~~~iE~~l~~~-~~V~~~~vv~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (657)
                      ++||.||+||+ +|++|+|.+||++|.+| |.+.+++|++.+++.   ..++.++...+...        ..++.. .  
T Consensus       422 ~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~-~--  489 (562)
T 3ite_A          422 FLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAV--------RGELRW-I--  489 (562)
T ss_dssp             EEEEC---------------------------------------------------------------------------
T ss_pred             EEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccc--------cccccc-c--
Confidence            99999999997 89999999999999998 888899888766542   33333333322110        000000 0  


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccc-cccccchHHHHHHHHHH-HHHHHhh
Q 006197          584 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT-ATLKKKRNKLLIYYQVE-IDQLYEK  651 (657)
Q Consensus       584 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t-~~GKv~r~~l~~~~~~~-i~~ly~~  651 (657)
                      .+-...+.++|+++++ ++||.|++|+.|+++++.      |+| ++||++|++|+++|++. .+.++..
T Consensus       490 ~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~~l------P~t~~~GKi~r~~L~~~~~~~~~~~~~~~  552 (562)
T 3ite_A          490 NENYKEINNSLRQACE-QTLPAYMVPDFIIPISFI------PLRDTSAKTDAKALEHMFHTLSLGELFGE  552 (562)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             ccchhhHHHHHHHHHH-hhCCcccCCcEEEEeccC------CCCCCCCcchHHHHHHHHhccCHHHHhcc
Confidence            0111233456677775 789999999999987664      998 89999999999999863 4555543

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=1.4e-67  Score=590.04  Aligned_cols=504  Identities=17%  Similarity=0.187  Sum_probs=394.3

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      .+..++.++|+++++++||++|+++.   ++  +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus         8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~   82 (590)
T 3kxw_A            8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF   82 (590)
T ss_dssp             HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence            45679999999999999999999986   42  22379999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEeccCCCC---hhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCc
Q 006197          119 EACNALSLICVPLYDTLG---PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (657)
Q Consensus       119 lA~~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (657)
                      |||+++|++++|++|..+   .+++.++++.+++++++++.+....+........+....+...                
T Consensus        83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  146 (590)
T 3kxw_A           83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI----------------  146 (590)
T ss_dssp             HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE----------------
T ss_pred             HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee----------------
Confidence            999999999999999884   5789999999999999999887766543221111111111111                


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh
Q 006197          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (657)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  275 (657)
                         ..+.+... ...........++++++|+|||||||.||+|++||+++.+.+......+     ++.++|++++.+|+
T Consensus       147 ---~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~  217 (590)
T 3kxw_A          147 ---ALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP  217 (590)
T ss_dssp             ---EGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred             ---echhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence               11111000 0112223455789999999999999999999999999999998887777     88999999999999


Q ss_pred             hHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 006197          276 AHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALK  349 (657)
Q Consensus       276 ~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (657)
                      +|.+++.. .+.+++.|+++++.+.     ++..+++.|+++++|++.++|.++..+.+.+....               
T Consensus       218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------  282 (590)
T 3kxw_A          218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK---------------  282 (590)
T ss_dssp             TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG---------------
T ss_pred             CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh---------------
Confidence            99999986 7778999999998864     78999999999999999999999988865322110               


Q ss_pred             HHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC------CceeeeccCCCCCCcccc
Q 006197          350 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPTTV  423 (657)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE~~~~~~~  423 (657)
                                      .+.        ..+++||.+++||+++++++.+++.+.++      .++++.||+||+++.++.
T Consensus       283 ----------------~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~  338 (590)
T 3kxw_A          283 ----------------KEG--------LDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTG  338 (590)
T ss_dssp             ----------------GTT--------CCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEE
T ss_pred             ----------------ccC--------CCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeec
Confidence                            000        11258999999999999999999998873      479999999999987775


Q ss_pred             ccCC--------------------------CccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccC
Q 006197          424 CFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  477 (657)
Q Consensus       424 ~~~~--------------------------~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~  477 (657)
                      ....                          ......++|.|+++  ++|+| +++ ..+++.|+.|||+|+||+++.|||
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~  414 (590)
T 3kxw_A          339 GTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAKGYW  414 (590)
T ss_dssp             CCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCCCBT
T ss_pred             ccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCccccccc
Confidence            4321                          11234688999988  88888 543 356667889999999999999999


Q ss_pred             CCchhhhccccC-------C--ccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHH-hcCcccc--eEEEE
Q 006197          478 KNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DIWVY  545 (657)
Q Consensus       478 ~~~~~~~~~~~~-------g--~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l-~~~~~V~--~~~vv  545 (657)
                      ++++.|.+.|.+       |  ||+|||+|++| +|.|+++||.||+||+ +|++|+|.+||++| ..+|.|.  +|+|+
T Consensus       415 ~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~  492 (590)
T 3kxw_A          415 NQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAF  492 (590)
T ss_dssp             TCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEE
T ss_pred             CChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEE
Confidence            999999999843       5  99999999999 9999999999999998 89999999999999 8899998  78888


Q ss_pred             ecCC--CCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeee-EEEEecCCCCCC
Q 006197          546 GDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDME  622 (657)
Q Consensus       546 ~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~f~~~  622 (657)
                      +.++  .+.+++++++.++.                  ......+.+.+.+++.+..    .+++|. .+.++.    ++
T Consensus       493 ~~~~~~~~~~~~~v~~~~~~------------------~~~~~~~~l~~~l~~~l~~----~~~~p~~~i~~v~----~~  546 (590)
T 3kxw_A          493 VIQEEHEYKLTVMCEVKNRF------------------MDDVAQDNLFNEIFELVYE----NHQLEVHTIVLIP----LK  546 (590)
T ss_dssp             EEEETTEEEEEEEEEESCTT------------------CCHHHHHHHHHHHHHHHHH----HHSCCCCEEEEEE----TT
T ss_pred             EecCCCCceEEEEEEecccc------------------ccchhHHHHHHHHHHHHHH----HcCCceeEEEEEC----CC
Confidence            8543  35778888877542                  0111122333333333321    244453 455553    24


Q ss_pred             CCccccccccchHHHHHHHHH
Q 006197          623 RDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       623 ~~P~t~~GKv~r~~l~~~~~~  643 (657)
                      .+|+|++|||+|++|+++|.+
T Consensus       547 ~lP~t~sGKi~R~~L~~~~~~  567 (590)
T 3kxw_A          547 AMPHTTSGKIRRNFCRKHLLD  567 (590)
T ss_dssp             CSCCCSCHHHHHHHHHHHHHH
T ss_pred             ccCcCCCcHHHHHHHHHHHHc
Confidence            569999999999999999875

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=8.2e-66  Score=621.17  Aligned_cols=477  Identities=19%  Similarity=0.224  Sum_probs=395.5

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..+++++|+++++++||++|+++.   +      +++||+||.++++++|++|++.|+++|++|+|+++|++++++++||
T Consensus       463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la  533 (1304)
T 2vsq_A          463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG  533 (1304)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999875   3      5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|++|.++.+++.++++.++++++|++......+..     .+....++.+++...                
T Consensus       534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~----------------  592 (1304)
T 2vsq_A          534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR----------------  592 (1304)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG----------------
T ss_pred             HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc----------------
Confidence            99999999999999999999999999999999999876543211     111122333332110                


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (657)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (657)
                        . ..  ....+.....++++++|+|||||||.||||+++|+++.+. ......+     ++.++|++++..|++|..+
T Consensus       593 --~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~  661 (1304)
T 2vsq_A          593 --F-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAF  661 (1304)
T ss_dssp             --G-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred             --c-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHH
Confidence              0 00  1111223457899999999999999999999999999876 3333333     7889999999999999888


Q ss_pred             HHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG  356 (657)
Q Consensus       281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (657)
                      ....+.++..|+++++.+.    ++..+.+.|.++++|+++++|+++..+.+....                        
T Consensus       662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------  717 (1304)
T 2vsq_A          662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------  717 (1304)
T ss_dssp             HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred             HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence            8778889999999999874    789999999999999999999999988642100                        


Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC---cccc
Q 006197          357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MCMV  432 (657)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---~~~~  432 (657)
                                   .+        ++||.+++||+++++++.+.+.+.+ +..++|.||+||++++++......   ....
T Consensus       718 -------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~  776 (1304)
T 2vsq_A          718 -------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISS  776 (1304)
T ss_dssp             -------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSS
T ss_pred             -------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCC
Confidence                         01        2899999999999999999988776 468999999999998877654322   2234


Q ss_pred             CccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc-------CCccccCceEEEcCCCc
Q 006197          433 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGV  505 (657)
Q Consensus       433 ~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~~~~~G~  505 (657)
                      .++|+|+++++++|+| +++.  +++.|+.|||+|+|+++++||+++++.|.+.|.       ++||+|||+|++++||.
T Consensus       777 ~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~  853 (1304)
T 2vsq_A          777 LPIGKPISNASVYILN-EQSQ--LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGT  853 (1304)
T ss_dssp             CCCBEECTTEEEEEEC-TTSC--BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSC
T ss_pred             CCCceeeCCCEEEEEC-CCcC--CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCe
Confidence            6899999999999999 6654  555678999999999999999999999999982       35999999999999999


Q ss_pred             EEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhc
Q 006197          506 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  582 (657)
Q Consensus       506 l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  582 (657)
                      |+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   ..++|+|+.....                  +
T Consensus       854 l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~------------------~  914 (1304)
T 2vsq_A          854 IEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL------------------S  914 (1304)
T ss_dssp             EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS------------------C
T ss_pred             EEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC------------------C
Confidence            9999999999998 7999999999999999999999999986543   4899999876532                  1


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006197          583 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  640 (657)
Q Consensus       583 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~  640 (657)
                      .        ++|+++++ +.||.|++|..|+++++.      |+|++|||||++|.+.
T Consensus       915 ~--------~~l~~~l~-~~Lp~ymvP~~~~~l~~l------P~t~~GKidR~~L~~~  957 (1304)
T 2vsq_A          915 A--------EDVKAHLK-KQLPAYMVPQTFTFLDEL------PLTTNGKVNKRLLPKP  957 (1304)
T ss_dssp             H--------HHHHHHHH-HHSCGGGSCSEEEEESCC------CCCSSCSSCCSCCCCC
T ss_pred             H--------HHHHHHHH-HhChHhhhccEEEEeccc------CCCCCcccCHhhcCCc
Confidence            1        23344443 579999999999998764      9999999999988654

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=5.3e-56  Score=483.79  Aligned_cols=402  Identities=17%  Similarity=0.203  Sum_probs=312.3

Q ss_pred             CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (657)
Q Consensus        39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~  118 (657)
                      .+..++.++|+++++++||++|+++....++..+.++++||+||.++++++|++|++.|+ +||+|+++++|++++++++
T Consensus        21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~   99 (480)
T 3t5a_A           21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAF   99 (480)
T ss_dssp             ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHH
T ss_pred             CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHH
Confidence            346799999999999999999999871101234455899999999999999999999996 9999999999999999999


Q ss_pred             HHHHhcCCEEEeccC---CCChhHHHHHHhccCceEEEEcchhhhhhhcccccccc-CceEEEEecCCcHHHHHHHhhCC
Q 006197          119 EACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTG  194 (657)
Q Consensus       119 lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~  194 (657)
                      |||+++|++++|+++   .++.+++.++|+.++++++|++......+......... ....++..+...           
T Consensus       100 lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  168 (480)
T 3t5a_A          100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD-----------  168 (480)
T ss_dssp             HHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-----------
T ss_pred             HHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-----------
Confidence            999999999999999   78899999999999999999999877665443321100 111222222111           


Q ss_pred             cceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCC------CcE
Q 006197          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDV  268 (657)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~------~d~  268 (657)
                                 .............++++++|+|||||||.||+|++||+++.+++......+     .+..      +|+
T Consensus       169 -----------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~  232 (480)
T 3t5a_A          169 -----------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSA  232 (480)
T ss_dssp             -----------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEE
T ss_pred             -----------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCe
Confidence                       000112223345678999999999999999999999999999888876666     4555      999


Q ss_pred             EEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006197          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (657)
Q Consensus       269 ~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (657)
                      +++.+|++|.+++.. .+.++..|+++++.+.     ++..+++.++++++| +..+|+++..++.....          
T Consensus       233 ~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~----------  301 (480)
T 3t5a_A          233 LVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT----------  301 (480)
T ss_dssp             EEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC----------
T ss_pred             EEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC----------
Confidence            999999999999765 6778999999999863     889999999999999 88899888777542110          


Q ss_pred             HHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC------CceeeeccCCC
Q 006197          343 RIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTE  416 (657)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE  416 (657)
                                          .+..+        ...+++||.+++||+++++++.+++.+.++      ..+++.||+||
T Consensus       302 --------------------~~~~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE  353 (480)
T 3t5a_A          302 --------------------DDDMA--------GRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAE  353 (480)
T ss_dssp             --------------------TGGGT--------TCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETT
T ss_pred             --------------------ccccc--------ccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccc
Confidence                                00001        112259999999999999999999998873      36999999999


Q ss_pred             CCCccccccCCC------------------------ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCc
Q 006197          417 TCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL  472 (657)
Q Consensus       417 ~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~  472 (657)
                      +++.++......                        ....+++|+|++ ++++|+| ++++ .+++.|+.|||+|+||++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g-~~~~~g~~GEl~v~g~~v  430 (480)
T 3t5a_A          354 ATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTC-IECPDGTVGEIWVHGDNV  430 (480)
T ss_dssp             TTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTT-EECCTTBCEEEEEESTTS
T ss_pred             cceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCC-cCCCCCCEEEEEEeCCcc
Confidence            998777655432                        123468999999 9999999 5532 455677899999999999


Q ss_pred             ccccCCCchhhhccc------------cCCccccCceEEEcCCCcEEEEec
Q 006197          473 FSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR  511 (657)
Q Consensus       473 ~~gy~~~~~~~~~~~------------~~g~~~TGDl~~~~~~G~l~i~GR  511 (657)
                      +.|||++++.|.+.|            .+|||+|||+|++| ||+|+|+||
T Consensus       431 ~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          431 ANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             CCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             ccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            999999999999988            36799999999997 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=2.3e-49  Score=412.21  Aligned_cols=314  Identities=18%  Similarity=0.122  Sum_probs=257.1

Q ss_pred             CCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEec
Q 006197          219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH  298 (657)
Q Consensus       219 ~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~  298 (657)
                      .+++++|+|||||||.||+|++||+++.+++..+...+     ++.++|++++.+|++|.+++...+.++..|+++++..
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~  110 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE  110 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence            46899999999999999999999999999998887777     8999999999999999999988888999999998876


Q ss_pred             CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHc
Q 006197          299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARL  378 (657)
Q Consensus       299 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (657)
                      .. ...++.++++++|++.++|+++..|++....                                   ..        .
T Consensus       111 ~~-~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-----------------------------------~~--------~  146 (358)
T 4gs5_A          111 PT-ANPLAGLDHADFDFVAMVPMQLQSILENSAT-----------------------------------SG--------Q  146 (358)
T ss_dssp             CC-SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-----------------------------------GG--------G
T ss_pred             cc-ccHHHHHHHhCCeEEEcChHHHHHhhccccc-----------------------------------cc--------c
Confidence            42 2346778999999999999999988642110                                   00        1


Q ss_pred             CCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCC
Q 006197          379 GGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD  458 (657)
Q Consensus       379 ~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~  458 (657)
                      +++||.+++||+++++++.+++.+ +++++++.||+||++..++....+.... +++|.+.|++++.+.+          
T Consensus       147 l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~----------  214 (358)
T 4gs5_A          147 VDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE----------  214 (358)
T ss_dssp             GGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT----------
T ss_pred             CCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC----------
Confidence            148999999999999999999987 5999999999999998877766555443 8899999999888765          


Q ss_pred             CCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHH---hc
Q 006197          459 DPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY---CV  535 (657)
Q Consensus       459 ~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l---~~  535 (657)
                         .|||+++|+..               .+|||+|||+|++|++| ++++||.||+||+ +|++|+|.+||+.|   .+
T Consensus       215 ---~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~  274 (358)
T 4gs5_A          215 ---RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFH  274 (358)
T ss_dssp             ---TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHH
T ss_pred             ---cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhcc
Confidence               59999998632               27899999999999988 6677999999997 89999999999877   46


Q ss_pred             CcccceEEEEe-cCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeE
Q 006197          536 APIIEDIWVYG-DSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKG  611 (657)
Q Consensus       536 ~~~V~~~~vv~-~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~  611 (657)
                      ||+|.+|+|+. .+++   +.++|+|+.....                     ..    .++|+++++ ++||.|++|++
T Consensus       275 ~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~---------------------~~----~~~l~~~l~-~~L~~~~~P~~  328 (358)
T 4gs5_A          275 HLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE---------------------AL----TERLTAEIR-SRVSTYENPKH  328 (358)
T ss_dssp             HHTCCCCEEEEEEEETTTEEEEEEEEESCCCH---------------------HH----HHHHHHHHH-HHSCGGGSCSC
T ss_pred             CCCccEEEEEEecCCccCCEEEEEEEECCCCC---------------------cC----HHHHHHHHH-hhCCCCCCceE
Confidence            89999998874 4333   4788888766532                     11    223444454 57999999999


Q ss_pred             EEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          612 VILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       612 i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                      |+++++.      |+|++|||+|++|++++++..
T Consensus       329 i~~v~~l------P~t~~GKi~R~~L~~~l~e~~  356 (358)
T 4gs5_A          329 IYFAKAF------AKTQTDKIDKRATFQKLSDSS  356 (358)
T ss_dssp             EEEESSC------CBCTTSCBCHHHHHHHTC---
T ss_pred             EEEECCc------CCCCCCChhHHHHHHHhhhhc
Confidence            9998764      999999999999999887654

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=1e-43  Score=382.31  Aligned_cols=338  Identities=17%  Similarity=0.148  Sum_probs=256.6

Q ss_pred             CCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHHhcCcEE
Q 006197          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV  294 (657)
Q Consensus       216 ~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~l~~G~~~  294 (657)
                      ...++++++++|||||||.||+|++||+++......+...+..  .++.++|++++.+|+ +|..++...+.++..|+++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~  165 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV  165 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence            3467899999999999999999999999998776554432211  268899999999998 5777777777889999998


Q ss_pred             EEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHH
Q 006197          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRK  373 (657)
Q Consensus       295 v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (657)
                      ++.+. ++..+++.|+++++|+++++|+++..|.+.........                                    
T Consensus       166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------  209 (443)
T 2y4o_A          166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------------------------  209 (443)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred             EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence            88765 89999999999999999999999999876543211000                                    


Q ss_pred             HHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCc-cccccCCCccccCccCcCccCeeEEEeecCCC
Q 006197          374 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEM  452 (657)
Q Consensus       374 ~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~  452 (657)
                          ..+++|.+++||+++++++.+.+.+.+|+++++.||+||+++. +........   ...+.+.+++.++|+| +++
T Consensus       210 ----~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-~~~  281 (443)
T 2y4o_A          210 ----AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID-PVT  281 (443)
T ss_dssp             ----GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-TTT
T ss_pred             ----ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-CCC
Confidence                0148999999999999999999998889999999999998543 232211111   1244567899999998 442


Q ss_pred             CCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCC-CcE-----EEEecCcceeecCCceeecc
Q 006197          453 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEYVAL  526 (657)
Q Consensus       453 ~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~-G~l-----~i~GR~~d~i~~~~G~~v~~  526 (657)
                      + .+++.|+.|||+|+|.            +.+.|.++||+|||+|+++++ |++     ++.||.+|+|++ +|.+|+|
T Consensus       282 g-~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p  347 (443)
T 2y4o_A          282 G-EVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVNVFP  347 (443)
T ss_dssp             C-CBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEEECH
T ss_pred             C-CCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEEECH
Confidence            2 4566778999999983            334456899999999999999 986     899999999997 7999999


Q ss_pred             HHHHHHHhcCcccceEEEEecCC---CCeEEEEEecCh--hhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhC
Q 006197          527 EYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCE--EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN  601 (657)
Q Consensus       527 ~~iE~~l~~~~~V~~~~vv~~~~---~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  601 (657)
                      .+||++|.+||+|.+++|++..+   .+.++++|++.+  +..                 ......+.+.+.+++     
T Consensus       348 ~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~-----------------~~~~~~~~l~~~l~~-----  405 (443)
T 2y4o_A          348 SQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS-----------------VTDGERAALARELQH-----  405 (443)
T ss_dssp             HHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT-----------------CCHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc-----------------chhhHHHHHHHHHHH-----
Confidence            99999999999999999887432   357889999876  210                 001111223333332     


Q ss_pred             CCCCc-eeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197          602 KLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  639 (657)
Q Consensus       602 ~l~~~-~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~  639 (657)
                      .|+.| .+|..|.+++    ++++|+|++||++|+..++
T Consensus       406 ~l~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~~~r  440 (443)
T 2y4o_A          406 RIKTMVGVSSGVTVLA----AGGIPATATGKARRVIDRR  440 (443)
T ss_dssp             HHHHHTCCCCEEEEEC----TTCSCCCTTSCCCSEEECC
T ss_pred             HHHHHhCCceEEEEeC----CCcccCccCCcceEEEecc
Confidence            34444 4777788774    2456999999999976443

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=4e-43  Score=376.83  Aligned_cols=334  Identities=17%  Similarity=0.165  Sum_probs=248.0

Q ss_pred             CCCC-CceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH-HHHHHHhcCcE
Q 006197          216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS  293 (657)
Q Consensus       216 ~~~~-~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~-~~~~~l~~G~~  293 (657)
                      ...+ +++++++|||||||.||+|++||+++.+.+..+...+..  .++.++|++++.+|+.|..+.. ..+.++..|++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            3455 899999999999999999999999998877665432211  2688999999999987555544 56677999999


Q ss_pred             EEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHH
Q 006197          294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFR  372 (657)
Q Consensus       294 ~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (657)
                      +++.+. ++..+++.|+++++|+++++|+++..|.+.........                                   
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-----------------------------------  203 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP-----------------------------------  203 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence            988765 89999999999999999999999999886544221100                                   


Q ss_pred             HHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCC
Q 006197          373 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEM  452 (657)
Q Consensus       373 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~  452 (657)
                           .+++||.+++||+++++++.+.+.+.+|+++++.||+||+++.++......  . ...|.+.++++++|+| +++
T Consensus       204 -----~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~-~g~~~~~~~~~v~i~d-~~~  274 (436)
T 3qov_A          204 -----RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE--Q-NGMHFWEDCYLVEIID-PET  274 (436)
T ss_dssp             -----TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT--C-SSEEECTTTEEEEEEC-TTT
T ss_pred             -----ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC--C-CeeEEccCceEEEEEE-CCC
Confidence                 014899999999999999999999999999999999999965433222211  1 2356677899999998 433


Q ss_pred             CCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCC------c---EEEEecCcceeecCCcee
Q 006197          453 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKISQGEY  523 (657)
Q Consensus       453 ~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G------~---l~i~GR~~d~i~~~~G~~  523 (657)
                      + .+++.|+.|||+|+|.            +...|.++||+|||+|+++++|      +   +++.||.||+|++ +|++
T Consensus       275 g-~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~G~~  340 (436)
T 3qov_A          275 G-EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-KGVN  340 (436)
T ss_dssp             C-SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-TTEE
T ss_pred             C-CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-CCEE
Confidence            3 4566778999999983            3344568999999999999998      5   6999999999998 7999


Q ss_pred             eccHHHHHHHhcCcccceEEEEecCC---CCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHh
Q 006197          524 VALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  600 (657)
Q Consensus       524 v~~~~iE~~l~~~~~V~~~~vv~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  600 (657)
                      |+|.+||++|.+||+|.+++|++..+   .+.++++|++. +..        . .+..   ...++.+.+++.|      
T Consensus       341 v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~--------~-~~~~---~~~~l~~~l~~~l------  401 (436)
T 3qov_A          341 IFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS--------T-DNYI---ELEKIRRDIIRQL------  401 (436)
T ss_dssp             ECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC--------C-CCHH---HHHHHHHHHHHHH------
T ss_pred             ECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc--------c-cchh---hHHHHHHHHHHHH------
Confidence            99999999999999999999998654   35899999988 430        0 0000   0122333333333      


Q ss_pred             CCCCCc-eeeeEEEEecCCCCCCCCccccccccchHH
Q 006197          601 NKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK  636 (657)
Q Consensus       601 ~~l~~~-~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~  636 (657)
                         +.+ ++|..+.+++    .+.+|+|+ ||++|..
T Consensus       402 ---~~~~~~p~~i~~v~----~~~lP~t~-GKi~R~~  430 (436)
T 3qov_A          402 ---KDEILVTPKVKLVK----KGSLPQSE-GKAVRVK  430 (436)
T ss_dssp             ---HHHHSSCCEEEEEC----TTCCC--------CEE
T ss_pred             ---HHhcCCceEEEEeC----CCcccCcC-CcceEEE
Confidence               234 5677788876    23569999 9999853

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=1.8e-42  Score=371.82  Aligned_cols=334  Identities=18%  Similarity=0.160  Sum_probs=255.5

Q ss_pred             CCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHHhcCcEE
Q 006197          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV  294 (657)
Q Consensus       216 ~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~l~~G~~~  294 (657)
                      ...++++++++|||||||.||+|++||+++...+..+...+..  .++.++|++++.+|+ +|..++...+.++..|+++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~  163 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV  163 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence            3467899999999999999999999999998776554432211  268899999999998 6777777778889999999


Q ss_pred             EEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHH
Q 006197          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRK  373 (657)
Q Consensus       295 v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (657)
                      ++.+. ++..+++.|+++++|+++++|+++..|.+.........                                    
T Consensus       164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------  207 (437)
T 2y27_A          164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP------------------------------------  207 (437)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred             EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence            87765 89999999999999999999999999876543211000                                    


Q ss_pred             HHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCc-cccccCCCccccCccCcCccCeeEEEeecCCC
Q 006197          374 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEM  452 (657)
Q Consensus       374 ~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~  452 (657)
                          ..+++|.+++||+++++++.+.+.+.+|+++++.||+||+++. ++.......   ...+.+.+++.++|+| +++
T Consensus       208 ----~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-~~~  279 (437)
T 2y27_A          208 ----VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID-PET  279 (437)
T ss_dssp             ----GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC-TTT
T ss_pred             ----ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc-CCC
Confidence                0148999999999999999999998889999999999998543 332221111   1255667899999998 443


Q ss_pred             CCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcC-CCcE-----EEEecCcceeecCCceeecc
Q 006197          453 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGEYVAL  526 (657)
Q Consensus       453 ~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~-~G~l-----~i~GR~~d~i~~~~G~~v~~  526 (657)
                       ..+++.|+.|||+++|.            +.+.|.++||+|||+|++++ +|++     ++.||.||+|++ +|++|+|
T Consensus       280 -g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~v~p  345 (437)
T 2y27_A          280 -GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVNVFP  345 (437)
T ss_dssp             -CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEEECH
T ss_pred             -CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCeEECH
Confidence             24566788999999982            33445689999999999998 6985     899999999997 8999999


Q ss_pred             HHHHHHHhcCcccceEEEEecC---CCCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCC
Q 006197          527 EYLENVYCVAPIIEDIWVYGDS---LKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKL  603 (657)
Q Consensus       527 ~~iE~~l~~~~~V~~~~vv~~~---~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  603 (657)
                      .+||++|.+||+|.+++|++..   ..+.++++|++.++..                 ......+.+.+.++     +.|
T Consensus       346 ~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~-----------------~~~~~~~~l~~~l~-----~~l  403 (437)
T 2y27_A          346 TQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA-----------------PDTAAIQVAKQALA-----YDI  403 (437)
T ss_dssp             HHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT-----------------TCHHHHHHHHHHHH-----HHH
T ss_pred             HHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc-----------------chhhhHHHHHHHHH-----HHH
Confidence            9999999999999999888743   2458999999886430                 00011122233332     344


Q ss_pred             CCc-eeeeEEEEecCCCCCCCCccccccccchHH
Q 006197          604 RGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK  636 (657)
Q Consensus       604 ~~~-~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~  636 (657)
                      +.| .+|..|.+++    ++++|+|+ ||++|+.
T Consensus       404 ~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          404 KSLIGVTAVINVLP----VNGIERSV-GKARRVV  432 (437)
T ss_dssp             HHHHCCCEEEEECC----TTCSCCCS-SSCCCEE
T ss_pred             HHhcCCceEEEEeC----CCCccCCC-CcceEEE
Confidence            455 4788888764    24569999 9999864

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.95  E-value=2.2e-27  Score=248.49  Aligned_cols=236  Identities=17%  Similarity=0.161  Sum_probs=171.6

Q ss_pred             CCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHHhcCcEEE
Q 006197          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG  295 (657)
Q Consensus       217 ~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~l~~G~~~v  295 (657)
                      ..++++++++|||||||.||+|+++|+++......+...+..  .++.++|++++.+|+ +|..++...+.++..|+.++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence            467889999999999999999999999999988754433221  267899999999999 99999888777889999433


Q ss_pred             EecCChH-----------------------HHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006197          296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAW  352 (657)
Q Consensus       296 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (657)
                      ....++.                       .+++.++++++|++.++|+++..|++....                    
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~--------------------  225 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV--------------------  225 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH--------------------
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh--------------------
Confidence            3333665                       777799999999999999999998754211                    


Q ss_pred             hhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHH-Hhc-CCceeeeccCCCCCCccccccCCCcc
Q 006197          353 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPDEMC  430 (657)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~  430 (657)
                                    ...++        ++||.+++||+++++++.+.+. +.+ ++++++.||+||+++++..++.    
T Consensus       226 --------------~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----  279 (369)
T 3hgu_A          226 --------------VLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI----  279 (369)
T ss_dssp             --------------HHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----
T ss_pred             --------------hcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc----
Confidence                          01112        2899999999999999999999 888 8999999999999876543321    


Q ss_pred             ccCccCcC------ccCeeEEEeecC-CCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCC
Q 006197          431 MVGTAGPV------SVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN  503 (657)
Q Consensus       431 ~~~~~G~~------~~~~~~~iv~~~-~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~  503 (657)
                        .++|.+      +++++++|+| + ++  .+++.|+.|||+|++..-.            .+ --.|+|||++...+.
T Consensus       280 --~~~G~~~~~~~~~~~~~v~ivD-~~~g--~~vp~G~~GEl~vt~l~~~------------~~-l~ry~tgD~~~~~~~  341 (369)
T 3hgu_A          280 --TSESQQVIYDSFSPFITYDVVD-SITA--QTVEYGERGNVIVTHLSPW------------AF-YPRVAERDTAIRLPG  341 (369)
T ss_dssp             --CTTCSSCEEECCTTTEEEEEEC-TTTC--SBCCTTCEEEEEEEEEETT------------EE-EEEEEEEEEEEEECC
T ss_pred             --ccCCCcccccCCCCCeEEEEEC-CCCC--cCCCCCCceEEEEEEcCcc------------cc-cccccCCceEEEecC
Confidence              248888      9999999998 5 44  4666789999999973211            11 113788888876432


Q ss_pred             --C-------cEEEEecCcceeec
Q 006197          504 --G-------VVKIIDRKKNLIKI  518 (657)
Q Consensus       504 --G-------~l~i~GR~~d~i~~  518 (657)
                        |       .+..++|.++..++
T Consensus       342 ~~g~~~d~~~~v~~~~~~~~~~~i  365 (369)
T 3hgu_A          342 VSGFAGDRLADIEPLKISEGRKVI  365 (369)
T ss_dssp             STTCSSCEEEEEEECC--------
T ss_pred             CCCCcCcccccceeccccCCCcee
Confidence              2       24556676666665

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.22  E-value=2.3e-11  Score=102.21  Aligned_cols=98  Identities=11%  Similarity=-0.006  Sum_probs=64.4

Q ss_pred             ecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHH
Q 006197          510 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  586 (657)
Q Consensus       510 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (657)
                      .|.||+|++ +|.+|+|.+||++|.+||+|.+++|++.++.   +.+.++|+..++..                 .....
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~-----------------~~~~~   62 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFT-----------------DDYGR   62 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHHH
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccc-----------------cccch
Confidence            489999998 7999999999999999999999999886543   47788888776430                 12222


Q ss_pred             HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccch
Q 006197          587 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKR  634 (657)
Q Consensus       587 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r  634 (657)
                      .+.+.+.|++.+...    +.++..+.+++    .+++|+| +||++|
T Consensus        63 ~~~l~~~i~~~l~~~----~gv~~~v~~v~----~~~lPrt-sGKi~R  101 (109)
T 3lax_A           63 LQALTREITRQLKDE----ILVTPRVKLVP----KGALPKS-EGKAVR  101 (109)
T ss_dssp             HHHHHHHHHHHHHHH----HSSCCEEEEEC----TTCSCCC----CCC
T ss_pred             hhhhHHHHHHHHHHH----hCCccceEEEc----CCeecCC-CCCcch
Confidence            333344444444311    11233466664    3567998 799988

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.72  E-value=5.7e-08  Score=104.35  Aligned_cols=160  Identities=19%  Similarity=0.138  Sum_probs=89.8

Q ss_pred             cCCc---EEEEEEcCCCCCHHHHHHHHHhc-CCcee-eeccCCCCCCccccccCCCccccCccCc-CccC-eeEEEeecC
Q 006197          378 LGGR---LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVP  450 (657)
Q Consensus       378 ~~~~---lr~i~~~G~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~iv~~~  450 (657)
                      +-|+   +..+++||.   ..-...++..+ +.+++ ..|++||+-. .....+...  +...+. .+++ .-...++.+
T Consensus       295 lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~~~--~~~~~~~L~~~~~ffEFip~~  368 (581)
T 4eql_A          295 LWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTF-GINLDPLCK--PEDVSYTFMPNMSYFEFIPMD  368 (581)
T ss_dssp             HSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEE-EECSCTTSC--GGGCCEEECTTSSEEEEEECS
T ss_pred             hCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCcccccccee-eeccCCCCC--cccCceeecCCcEEEEEEecc
Confidence            3367   555566663   33334444433 67777 9999999532 221111111  011221 1222 233444422


Q ss_pred             CC-CC-----CCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcC----CCcEEEEecCcceeecCC
Q 006197          451 EM-GY-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQ  520 (657)
Q Consensus       451 ~~-~~-----~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~G~l~i~GR~~d~i~~~~  520 (657)
                      +. .+     ..+..|+.+||+++..   .|.|+             |++||+.+++.    ..++.|.||.+++|.+ .
T Consensus       369 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~  431 (581)
T 4eql_A          369 GGDKNDVVDLEDVKLGCTYEPVVTNF---AGLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-D  431 (581)
T ss_dssp             TTCCSSCEEGGGCCTTCEEEEEEECS---SSCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-S
T ss_pred             ccCCCcEeCHHHcCCCceEEEEEeec---cceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-e
Confidence            21 11     1233567899999874   34444             99999999875    4579999999999997 7


Q ss_pred             ceeeccHHHHHHHhcCc--------ccceEEEEecC--CCCeEEEEEecC
Q 006197          521 GEYVALEYLENVYCVAP--------IIEDIWVYGDS--LKSMLVAVVVPC  560 (657)
Q Consensus       521 G~~v~~~~iE~~l~~~~--------~V~~~~vv~~~--~~~~~~a~v~~~  560 (657)
                      |++++..+||++|.+.-        .|.|..++...  .+.+-+.+.++.
T Consensus       432 Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~p~Hy~~~wel~  481 (581)
T 4eql_A          432 SDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVD  481 (581)
T ss_dssp             SCCEEHHHHHHHHHHC--------------CEEEECSSSSBEEEEECC--
T ss_pred             eeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCCCCCCCeEEEEEEEe
Confidence            99999999999997432        24455544322  123555555553

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.58  E-value=2.2e-07  Score=99.86  Aligned_cols=87  Identities=16%  Similarity=0.203  Sum_probs=63.1

Q ss_pred             CCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcC----CCcEEEEecCcceeecCCceeeccHHHHHH
Q 006197          457 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGEYVALEYLENV  532 (657)
Q Consensus       457 ~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~  532 (657)
                      +..|+.+||+++..   .|.|+             |++||+++++.    ..++.|.||.+++|.+ .|+++.+.+||++
T Consensus       393 Ve~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~Geki~~~~v~~a  455 (609)
T 4b2g_A          393 VEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-DSDKTDEAELQKA  455 (609)
T ss_dssp             CCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SSCCBCHHHHHHH
T ss_pred             cCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-cccCCCHHHHHHH
Confidence            34667899999763   46555             99999999873    4679999999999997 7999999999999


Q ss_pred             HhcC------c--ccceEEEEecC--CCCeEEEEEecC
Q 006197          533 YCVA------P--IIEDIWVYGDS--LKSMLVAVVVPC  560 (657)
Q Consensus       533 l~~~------~--~V~~~~vv~~~--~~~~~~a~v~~~  560 (657)
                      |...      .  .|.|..++...  .+.+-+.+.++.
T Consensus       456 v~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl~  493 (609)
T 4b2g_A          456 VDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELL  493 (609)
T ss_dssp             HHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             HHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEEe
Confidence            9631      2  35566655322  233555555553

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.45  E-value=1.4e-06  Score=93.45  Aligned_cols=162  Identities=19%  Similarity=0.127  Sum_probs=93.3

Q ss_pred             HcCCcEEEE--EEcCCCCCHHHHHHHHHhc-CCcee-eeccCCCCCCccccccCCCccccCccCc-CccC-eeEEEeecC
Q 006197          377 RLGGRLRLV--ISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVP  450 (657)
Q Consensus       377 ~~~~~lr~i--~~~G~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~iv~~~  450 (657)
                      .+-|+++.+  +.+|. + ..-...++..+ +.+++ ..|++||+-. .....+..  .++..+. .+|+ .-...++.+
T Consensus       299 ~lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~~--~~~~~~~~L~p~~~ffEFiP~~  373 (581)
T 4epl_A          299 ALFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGWI-AANVTPRL--SPEEATFAVIPNLGYFEFLPVS  373 (581)
T ss_dssp             HHCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEEE-EECCCTTS--CTTTCCEEECTTSCEEEEEEC-
T ss_pred             HhCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccceee-eeecCCCC--CccccceeecCCcEEEEEEecc
Confidence            344788633  34442 2 22334454444 67777 9999999632 22211111  1111221 2222 222333311


Q ss_pred             CCC---C-----CCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCC----CcEEEEecCcceeec
Q 006197          451 EMG---Y-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIKI  518 (657)
Q Consensus       451 ~~~---~-----~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~----G~l~i~GR~~d~i~~  518 (657)
                      +..   +     ..+..|+.+||+++..   .|.|+             |++||+.++..-    .++.|.||.++++.+
T Consensus       374 ~~~~~~~~~v~l~eve~G~~YelviTt~---~GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~  437 (581)
T 4epl_A          374 ETGEGEEKPVGLTQVKIGEEYEVVITNY---AGLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI  437 (581)
T ss_dssp             ------CCCEEGGGCCTTCEEEEEEEST---TSCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred             cccCCCCceeeHHHcCCCCeEEEEEeec---cceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence            111   1     1234577899999874   34444             999999998642    469999999999998


Q ss_pred             CCceeeccHHHHHHHhc------Cc--ccceEEEEecCC--CCeEEEEEecC
Q 006197          519 SQGEYVALEYLENVYCV------AP--IIEDIWVYGDSL--KSMLVAVVVPC  560 (657)
Q Consensus       519 ~~G~~v~~~~iE~~l~~------~~--~V~~~~vv~~~~--~~~~~a~v~~~  560 (657)
                       .|++++..+||++|..      ..  .|.|..++....  +.+-+.+.++.
T Consensus       438 -~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~  488 (581)
T 4epl_A          438 -NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEIS  488 (581)
T ss_dssp             -SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEES
T ss_pred             -eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeec
Confidence             7999999999999964      12  466666665322  23555556654

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=90.96  E-value=1.8  Score=44.92  Aligned_cols=122  Identities=8%  Similarity=-0.049  Sum_probs=88.8

Q ss_pred             CCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEEecc
Q 006197           57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY  132 (657)
Q Consensus        57 ~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~v~l~  132 (657)
                      +.++++...  .|.+|..+  .+|.+.+...+..++..+...|+.++|+++..++-+  ...+..+++++..|+..++.+
T Consensus        86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~  163 (436)
T 3qov_A           86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA  163 (436)
T ss_dssp             HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred             CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence            445544331  56666544  679999999888888888888999999999988754  334556788899999988776


Q ss_pred             CCCChhHHHHHHhccCceEEEEcchhhhhhhccccc-----cccCceEEEEecC
Q 006197          133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTS  181 (657)
Q Consensus       133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~  181 (657)
                      +. ..+.+...++..++.+++.....+..+......     ....++.+++-..
T Consensus       164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe  216 (436)
T 3qov_A          164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE  216 (436)
T ss_dssp             SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred             CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence            54 678889999999999999999877766543221     1345666666543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=90.20  E-value=2.1  Score=44.50  Aligned_cols=107  Identities=13%  Similarity=0.066  Sum_probs=81.2

Q ss_pred             CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEEe
Q 006197           55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP  130 (657)
Q Consensus        55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~v~  130 (657)
                      .++.++.+...  .|.+|..+  .+|...+...+..++..+...|+.++|++...++.+  ...+...++++..|+..++
T Consensus        88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            34556644331  56666543  678999988888888888888999999999988863  3334557888899999887


Q ss_pred             ccCCCChhHHHHHHhccCceEEEEcchhhhhhhc
Q 006197          131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS  164 (657)
Q Consensus       131 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~  164 (657)
                      ++.. +.+.+...++..++.+++.....+..+.+
T Consensus       166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~  198 (437)
T 2y27_A          166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIAD  198 (437)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred             CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence            7654 78888999999999999999887766544

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=89.85  E-value=2.2  Score=44.39  Aligned_cols=105  Identities=13%  Similarity=0.088  Sum_probs=80.9

Q ss_pred             CCCCce-eeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEEe
Q 006197           56 PGNRML-GWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP  130 (657)
Q Consensus        56 p~~~a~-~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~v~  130 (657)
                      ++.++. .+.   .|.+|..+  .+|...+...+..++..+...|+.++|+++..++-+  ...+...++++..|+..++
T Consensus        91 ~~~~~~i~~T---SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           91 REQVVRVHAS---SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP  167 (443)
T ss_dssp             GGGCCEEEEE---CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred             hhheEEEEEC---CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence            455554 444   56666654  678999988888888888888999999999988864  3334567888899999888


Q ss_pred             ccCCCChhHHHHHHhccCceEEEEcchhhhhhhc
Q 006197          131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS  164 (657)
Q Consensus       131 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~  164 (657)
                      ++.. +.+.+...++..++.+++.....+..+..
T Consensus       168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~  200 (443)
T 2y4o_A          168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLID  200 (443)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred             CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence            7654 78888899999999999999887766543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=82.55  E-value=14  Score=38.73  Aligned_cols=120  Identities=8%  Similarity=0.012  Sum_probs=84.4

Q ss_pred             CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEEec
Q 006197           55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL  131 (657)
Q Consensus        55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~v~l  131 (657)
                      .|+.+|++...  .|.+|..+  .+|.+.+...+..+..   ..++.++|+++..+|-...+ +..+++++..|+..+..
T Consensus       161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV  235 (501)
T ss_dssp             CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence            46677665541  56655544  6788888776655443   45889999999988876443 33467788899988877


Q ss_pred             cCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEec
Q 006197          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT  180 (657)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~  180 (657)
                      + ..+++.+...++..++.++......+..+..........++.+++-.
T Consensus       236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG  283 (501)
T 3ipl_A          236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGG  283 (501)
T ss_dssp             S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECS
T ss_pred             C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeC
Confidence            5 46788999999999999999999888777554433333566655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	657
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	6e-68
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-62
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-56
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	1e-48
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-42
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-41
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	6e-34

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  232 bits (592), Expect = 6e-68
 Identities = 89/551 (16%), Positives = 174/551 (31%), Gaps = 74/551 (13%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
            D  LN A +     +Q+      + W      +       +Y+E++ +V +  + L   
Sbjct: 67  EDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHI---SYRELHRDVCRFANTLLDL 123

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G + G  V IY    P+   AM AC  +  +   ++    P AV   +  +    V   D
Sbjct: 124 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 183

Query: 157 KKVKELLSPDCRSA-----QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
           + V+   S   +       +   V      +  ++    +        W   L      E
Sbjct: 184 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE 243

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
            +       +   I+YTSG++G PKGV+ T      + +    ++  +       D+Y  
Sbjct: 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY----HPGDIYWC 299

Query: 272 FLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEK 325
              +  +       Y     GA+   + G         +   + + +  +L   P     
Sbjct: 300 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR- 358

Query: 326 IHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 385
                                    A M  G K  E +  +               LR++
Sbjct: 359 -------------------------ALMAEGDKAIEGTDRS--------------SLRIL 379

Query: 386 ISGGAPLSTEV-EEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMCM-VGTAGPVSVY 441
            S G P++ E  E + +        +V  +  TET G      P  + +  G+A      
Sbjct: 380 GSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFG 439

Query: 442 SELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESII---DGWFHTGD 496
            +  L  V   G  P +    G + +           + + +   ++        + +GD
Sbjct: 440 VQPAL--VDNEG-HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGD 496

Query: 497 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSML 553
             +   +G   I  R  +++ +S G  +    +E+     P I +  V G         +
Sbjct: 497 GARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 555

Query: 554 VAVVVPCEEDT 564
            A V     + 
Sbjct: 556 YAYVTLNHGEE 566

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  214 bits (546), Expect = 2e-62
 Identities = 126/550 (22%), Positives = 194/550 (35%), Gaps = 87/550 (15%)

Query: 33  GFPSV--DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV 90
            FPS   D +LN  WD    +   +    ++          G     TY EVY+   +++
Sbjct: 1   AFPSTMMDEELNL-WDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLM 54

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
             LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE D
Sbjct: 55  GGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE-D 113

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            V + D  +  L+       + ++  V       E                         
Sbjct: 114 KVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE--------------GYLAYEEALGE 159

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E + +       C + YT+GT+G PKGVV +H  +                 ++  DV L
Sbjct: 160 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVL 216

Query: 271 SFLPLAHILDRVIEEYFFRRGASVGYY--HGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             +P+ H+    +       GA         D  +L +       T  AGVP V+     
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW----- 271

Query: 329 GIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 388
                                                  L  + +        LR ++ G
Sbjct: 272 -------------------------------------LALADYLESTGHRLKTLRRLVVG 294

Query: 389 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTAGPV 438
           G+     +           + QGYGLTET       F           +++ +    G  
Sbjct: 295 GSAAPRSLIARFERMGVE-VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLP 353

Query: 439 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDI 497
                LR+ +  E    P D    GEV ++G  +  GYY N + TR ++  DG+F TGDI
Sbjct: 354 IPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDI 412

Query: 498 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLV 554
                 G V+I DR K+LIK   GE+++   LEN     P +++  V        +   +
Sbjct: 413 AVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 471

Query: 555 AVVVPCEEDT 564
           AVVVP  E  
Sbjct: 472 AVVVPRGEKP 481

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  200 bits (509), Expect = 2e-56
 Identities = 92/556 (16%), Positives = 178/556 (32%), Gaps = 81/556 (14%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           ++  LN  ++       K P  + + +     G+       TYKE+ EEV Q+   L  S
Sbjct: 54  LNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSI---TYKELLEEVCQVAQVLTYS 110

Query: 97  -GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155
            G   G  V +Y    P+ +  + A + +  I   ++      ++   ++  +   V   
Sbjct: 111 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 170

Query: 156 DK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG 207
           D+        + K ++    R    +R ++ +     +    +V                
Sbjct: 171 DESNRGGKVIETKRIVDDALRETPGVRHVLVYR----KTNNPSVAFHAPRDLDWATEKKK 226

Query: 208 KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267
                   P    +   ++YTSG++G PKGV  +            L   ++      +D
Sbjct: 227 YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA----LLTMRYTFDTHQED 282

Query: 268 VYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPR 321
           V+ +   +  I       Y     G +   + G     + +   D + E K T     P 
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 381
                                             G    E   L                
Sbjct: 343 ALR--------------------------LLKRAGDSYIENHSLK--------------S 362

Query: 382 LRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--GTAG 436
           LR + S G P++ EV E+           +V  Y  TE+           +  +  G+A 
Sbjct: 363 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSAS 422

Query: 437 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESII---DGW 491
                 +  + + P  G         G + V+    +     +KN D   ++ +    G+
Sbjct: 423 FPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGY 481

Query: 492 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DS 548
           + TGD      +G + I+ R  +++ +S G  ++   +E      PI+ +  V G   D 
Sbjct: 482 YFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAVVGFNDDL 540

Query: 549 LKSMLVAVVVPCEEDT 564
               + A VV   + +
Sbjct: 541 TGQAVAAFVVLKNKSS 556

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  176 bits (447), Expect = 1e-48
 Identities = 119/532 (22%), Positives = 196/532 (36%), Gaps = 70/532 (13%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRP----FVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98
           TA +    ++++Y         P    F D      +  TY E +E  +++  A++  G 
Sbjct: 18  TAGEQLHKAMKRYAL------VPGTIAFTDAHIEVNI--TYAEYFEMSVRLAEAMKRYGL 69

Query: 99  EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK 158
               R+ +   N  Q+   +     + +   P  D      +   ++ ++   VFV  K 
Sbjct: 70  NTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG 129

Query: 159 VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
           ++++L+      ++L ++     + ++      Q+     +        + + +     +
Sbjct: 130 LQKILN----VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 185

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              I  IM +SG++G PKGV L H T     S     +  F +++  D   LS +P  H 
Sbjct: 186 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTAILSVVPFHHG 243

Query: 279 LDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                   +   G   V  Y  +       L + K      VP +F    +       +L
Sbjct: 244 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDL 303

Query: 338 RPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-V 396
             L                                            + SGGAPLS E  
Sbjct: 304 SNLHE------------------------------------------IASGGAPLSKEVG 321

Query: 397 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP 456
           E   +      + QGYGLTET     +  P+     G  G V  + E ++ ++       
Sbjct: 322 EAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLG 380

Query: 457 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNL 515
           ++    GE+CVRG  + SGY  NP+ T   I  DGW H+GDI     +    I+DR K+L
Sbjct: 381 VNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSL 438

Query: 516 IKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 564
           IK   G  VA   LE++    P I D  V G   D    +  AVVV     T
Sbjct: 439 IKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT 489

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  158 bits (400), Expect = 2e-42
 Identities = 88/527 (16%), Positives = 148/527 (28%), Gaps = 75/527 (14%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           + T  ++   +  + P          +          T+ E+   V  + + L A G  P
Sbjct: 1   MQTVNEMLRRAATRAPD------HCALAVPARGLRL-THAELRARVEAVAARLHADGLRP 53

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
             RV +   N    V A+ A + L  +   L   L    +  ++   E+    +   +  
Sbjct: 54  QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV 113

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   S  R+  +                    PYS+           +E    +P 
Sbjct: 114 ADAIFQSGSGARIIFLGDLVRDGE------------PYSYGP--------PIEDPQREPA 153

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
               I YTSGT+G PK             S V     Q   +    +V L  +PL H++ 
Sbjct: 154 QPAFIFYTSGTTGLPKAA---IIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                              +                                        
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRP------------------------------------- 233

Query: 341 RRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFL 400
                  ++   +   +            A     +     LR V   GA +   V E +
Sbjct: 234 -VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETV 292

Query: 401 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP 460
                   V  YG TE      +  P     +       V     +     +     +  
Sbjct: 293 HQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVR---IVRIGGGVDEIVANGE 349

Query: 461 PCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ 520
               +     + F GY   P  T E + DGW+ T D+    P G V+I+ R  ++I    
Sbjct: 350 EGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIIS-G 408

Query: 521 GEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 564
           GE +    +E V   AP + ++ V G         + A VVP   +T
Sbjct: 409 GENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET 455

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  156 bits (394), Expect = 1e-41
 Identities = 87/532 (16%), Positives = 165/532 (31%), Gaps = 98/532 (18%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T   +F   V K P N  +      + +       TY E+  +  Q+       G     
Sbjct: 24  TIHQLFEEQVSKRPNNVAIVCE---NEQL------TYHELNVKANQLARIFIEKGIGKDT 74

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
            VGI           + A        VP+        + +ILD ++   +  Q   V  +
Sbjct: 75  LVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI 134

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNI 222
                                       +Q   +   ++E     +      +P +  ++
Sbjct: 135 --------------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDL 168

Query: 223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282
             ++YTSGT+G+PKG +L H+ I+           +    +T  D    F  ++      
Sbjct: 169 AYVIYTSGTTGNPKGTMLEHKGISNLK-----VFFENSLNVTEKDRIGQFASISFDASVW 223

Query: 283 IEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
                   GAS+     D         +                             + +
Sbjct: 224 EMFMALLTGASLYIILKDTINDFVKFEQY----------------------------INQ 255

Query: 343 RIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV 402
           +    + L    + +   E                    ++ +I+ G+  S  +    + 
Sbjct: 256 KEITVITLPPTYVVHLDPERIL----------------SIQTLITAGSATSPSLVNKWKE 299

Query: 403 TCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC 462
                 +  YG TET    T     +  +  +    +     ++  V E           
Sbjct: 300 KVT--YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENL-QLKSVGEA 356

Query: 463 GEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRKKNL 515
           GE+C+ G+ L  GY+K P+LT +  +       +  + TGD  + L +G ++ + R  N 
Sbjct: 357 GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQ 416

Query: 516 IKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 564
           +KI  G  V LE +E++      I +  V        +  L A  V  +   
Sbjct: 417 VKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP 467

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  134 bits (337), Expect = 6e-34
 Identities = 89/530 (16%), Positives = 164/530 (30%), Gaps = 78/530 (14%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAIT--CGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V    +     + +  + AE     + D      
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ--PF 220
                R  Q               K   ++  I     +EFL L  ++   +  P+    
Sbjct: 137 YRSLARQVQ--------------SKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  +  + G++G  K +  TH+     +             +    +    +   + L 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTV---YLAALPMAHNYPLS 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                     G  V                                            P 
Sbjct: 240 SPGVLGVLYAGGRVVLSP---------------------------------------SPS 260

Query: 341 RRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFL 400
               F  ++   + +             +     +      L+++  GGA  S E    +
Sbjct: 261 PDDAFPLIEREKVTITALVPP--LAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV 318

Query: 401 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDD 459
           +      L Q +G+ E     T     E  +V T G P+S Y E R+    +     +  
Sbjct: 319 KAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRV--WDDHD-RDVKP 375

Query: 460 PPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNLIKI 518
              G +  RG     GYYK  +    S  + G++ TGDI ++  +G + +  R K+ I  
Sbjct: 376 GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINR 435

Query: 519 SQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDTK 565
             GE VA E +EN     P + D  +       L       ++P +E  K
Sbjct: 436 G-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK 484

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	657
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.3e-72  Score=630.32  Aligned_cols=526  Identities=15%  Similarity=0.170  Sum_probs=418.0

Q ss_pred             CCCCCcCcH-HHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 006197           36 SVDSDLNTA-WDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (657)
Q Consensus        36 ~~~~~~~~i-~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~  114 (657)
                      +.+....|+ .++|+++++.+||++|+++.   ....+..+++||+||.++++++|++|+++|+++||+|+++++|++++
T Consensus        65 wf~~~~~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~  141 (643)
T d1pg4a_          65 WYEDGTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA  141 (643)
T ss_dssp             ESTTCEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH
T ss_pred             eCCCChhhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHH
Confidence            566555555 45777888999999999986   44455668999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhh---------hccc-cccccCceEEEEecCCcH
Q 006197          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL---------LSPD-CRSAQRLRVMVCFTSLTA  184 (657)
Q Consensus       115 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~---------~~~~-~~~~~~~~~i~~~~~~~~  184 (657)
                      ++++|||+++|++++|+++.++.+++.++|++++++++|+++......         ...+ ......+..++++.....
T Consensus       142 iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~  221 (643)
T d1pg4a_         142 AVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS  221 (643)
T ss_dssp             HHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCC
T ss_pred             HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCc
Confidence            999999999999999999999999999999999999999986532211         1111 112345566666654322


Q ss_pred             HHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhh-hhhhcccccCCC
Q 006197          185 EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKM  263 (657)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~  263 (657)
                      ..    .........+....... ..........++|+++|+|||||||.||||++||++++..... +...+     ++
T Consensus       222 ~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~  291 (643)
T d1pg4a_         222 DI----DWQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DY  291 (643)
T ss_dssp             CC----CCCBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TC
T ss_pred             cc----ccccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CC
Confidence            10    00011222334444332 2333445567899999999999999999999999997665444 33344     78


Q ss_pred             CCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 006197          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (657)
Q Consensus       264 ~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~  337 (657)
                      .++|++++.+|++|.+++.. ++.+|..|++++++++     ++..+++.++++++|+++++|+++..|.+....     
T Consensus       292 ~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~-----  366 (643)
T d1pg4a_         292 HPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK-----  366 (643)
T ss_dssp             CTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG-----
T ss_pred             CCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcch-----
Confidence            99999999999999999876 5567999999999764     688999999999999999999999988643110     


Q ss_pred             chHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc---CCceeeeccC
Q 006197          338 RPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGL  414 (657)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~~~v~~~yG~  414 (657)
                                                 ..+..        .+++||.++++|+++++++.+++.+.+   ++++++.||+
T Consensus       367 ---------------------------~~~~~--------dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~  411 (643)
T d1pg4a_         367 ---------------------------AIEGT--------DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQ  411 (643)
T ss_dssp             ---------------------------GTTTC--------CCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCC
T ss_pred             ---------------------------hcccc--------CCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeech
Confidence                                       01111        125899999999999999999999887   4779999999


Q ss_pred             CCCCCccccccCCC-ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhccc---c
Q 006197          415 TETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---I  488 (657)
Q Consensus       415 tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g--~~~~~gy~~~~~~~~~~~---~  488 (657)
                      ||+++.++....+. ....+++|+|++|++++|+| +++.  +++.++.|||+|+|  |+++.||+++++.+.+.+   .
T Consensus       412 TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~--~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~  488 (643)
T d1pg4a_         412 TETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTF  488 (643)
T ss_dssp             GGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSS
T ss_pred             hhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCC--CCCCCceEEEEEecCCCcccccccCChhhchhhhcccC
Confidence            99998776654433 45569999999999999999 6665  44556899999999  578899999998887765   5


Q ss_pred             CCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHH
Q 006197          489 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  565 (657)
Q Consensus       489 ~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~  565 (657)
                      +|||+|||+|++|+||+|+++||+||+|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++++.. 
T Consensus       489 ~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~-  566 (643)
T d1pg4a_         489 KNMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE-  566 (643)
T ss_dssp             TTSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC-
T ss_pred             CCeEEcCCEEEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCC-
Confidence            899999999999999999999999999997 7999999999999999999999999997543   48999999987541 


Q ss_pred             HHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          566 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                                      ...+    +.++|+++++ ++|++|++|+.|+++++.      |+|++|||+|++|++++..+.
T Consensus       567 ----------------~~~~----~~~~i~~~~~-~~L~~~~vP~~i~~v~~l------P~T~sGKi~R~~Lr~~~~~~~  619 (643)
T d1pg4a_         567 ----------------PSPE----LYAEVRNWVR-KEIGPLATPDVLHWTDSL------PKTRSGKIMRRILRKIAAGDT  619 (643)
T ss_dssp             ----------------CCHH----HHHHHHHHHH-HHTCGGGCCSEEEECSCC------CBCTTSCBCHHHHHHHHHTC-
T ss_pred             ----------------CCHH----HHHHHHHHHH-hhCCcccCccEEEEECCC------CCCCCcCccHHHHHHHhcCCc
Confidence                            1222    3344555554 579999999999987654      999999999999999997643


Q ss_pred             H
Q 006197          646 D  646 (657)
Q Consensus       646 ~  646 (657)
                      .
T Consensus       620 ~  620 (643)
T d1pg4a_         620 S  620 (643)
T ss_dssp             -
T ss_pred             c
Confidence            3

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-71  Score=623.76  Aligned_cols=540  Identities=18%  Similarity=0.171  Sum_probs=414.1

Q ss_pred             CCCCCc-CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchh
Q 006197           36 SVDSDL-NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQ  113 (657)
Q Consensus        36 ~~~~~~-~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~-~~G~~~gd~V~i~~~n~~e  113 (657)
                      +.+... |...++|+++|+++||++|+++.   ..+.+..+++||+||.++++++|++|+ ++|+++||+|+++++|+++
T Consensus        52 wf~~~~lN~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e  128 (640)
T d1ry2a_          52 WFLNGQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE  128 (640)
T ss_dssp             BSTTCEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH
T ss_pred             CCCCCchhHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHH
Confidence            455433 44578899999999999999986   445566689999999999999999997 6799999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhh--------hccccccccCceEEEEecCCcHH
Q 006197          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAE  185 (657)
Q Consensus       114 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~  185 (657)
                      +++++|||+++|++++|+++.++.+++.++++.+++++++++.......        .......................
T Consensus       129 ~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (640)
T d1ry2a_         129 AIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP  208 (640)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCS
T ss_pred             HHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccc
Confidence            9999999999999999999999999999999999999999987543211        11111222333333333222110


Q ss_pred             HHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhh-hcccccCCCC
Q 006197          186 QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMT  264 (657)
Q Consensus       186 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~~  264 (657)
                      ..   .........+....... .......+..++|+++|+|||||||.||||+++|++++.+...... .+     .+.
T Consensus       209 ~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~-----~~~  279 (640)
T d1ry2a_         209 SV---AFHAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTH  279 (640)
T ss_dssp             SC---CCCSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCC
T ss_pred             cc---ccccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc-----CCC
Confidence            00   00001112222222221 2333344557889999999999999999999999998877655433 33     789


Q ss_pred             CCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006197          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (657)
Q Consensus       265 ~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~  338 (657)
                      ++|++++.+|++|.++... ++.+|..|+++++++.     ++..+++.|+++++|+++++|+++..|.+...       
T Consensus       280 ~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-------  352 (640)
T d1ry2a_         280 QEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD-------  352 (640)
T ss_dssp             SSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT-------
T ss_pred             cccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccc-------
Confidence            9999999999999999875 5667999999888764     67899999999999999999999988753210       


Q ss_pred             hHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC---CceeeeccCC
Q 006197          339 PLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLT  415 (657)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~t  415 (657)
                                               ...+..        .+++||.+++||+++++++.+++.+.++   .++++.||+|
T Consensus       353 -------------------------~~~~~~--------~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~t  399 (640)
T d1ry2a_         353 -------------------------SYIENH--------SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT  399 (640)
T ss_dssp             -------------------------TSSSSC--------CCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCT
T ss_pred             -------------------------cccccC--------CCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccc
Confidence                                     001111        1259999999999999999999999885   5699999999


Q ss_pred             CCCCccccccCCC--ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhccc---c
Q 006197          416 ETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---I  488 (657)
Q Consensus       416 E~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g--~~~~~gy~~~~~~~~~~~---~  488 (657)
                      |++..........  ....+++|.|++|++++|+| ++++....+.+..|||++++  |+++.|||++++.+.+.|   .
T Consensus       400 e~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~  478 (640)
T d1ry2a_         400 ESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY  478 (640)
T ss_dssp             TTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSS
T ss_pred             ccccccccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCC
Confidence            9998776655443  34568999999999999999 77766666666789999998  689999999999998877   3


Q ss_pred             CCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHH
Q 006197          489 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  565 (657)
Q Consensus       489 ~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~  565 (657)
                      +|||+|||+|++|+||+|+++||.||+|++ +|++|+|.+||++|.+||+|.+|+|+|.+++   +.++|+|+++++...
T Consensus       479 ~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~  557 (640)
T d1ry2a_         479 PGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSW  557 (640)
T ss_dssp             TTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-----
T ss_pred             CCeEEcCCceeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCc
Confidence            599999999999999999999999999996 7999999999999999999999999997654   589999999876421


Q ss_pred             HHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197          566 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  645 (657)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i  645 (657)
                      ..              ...+..+.+.+.|.++++ ++|++|++|+.|+++++.      |+|++|||+|++|++++.++.
T Consensus       558 ~~--------------~~~~~~~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~l------P~T~sGKi~R~~Lr~~~~~~~  616 (640)
T d1ry2a_         558 ST--------------ATDDELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDL------PKTRSGKIMRRILRKILAGES  616 (640)
T ss_dssp             ---------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCC------CBCTTSCBCHHHHHHSCC---
T ss_pred             cc--------------cchHHHHHHHHHHHHHHH-hhCCCCCCceEEEEeCCC------CCCCCcCccHHHHHHHHhCCc
Confidence            10              001112234556666665 689999999999997654      999999999999999998877


Q ss_pred             HHHHh
Q 006197          646 DQLYE  650 (657)
Q Consensus       646 ~~ly~  650 (657)
                      ++++.
T Consensus       617 ~~~~d  621 (640)
T d1ry2a_         617 DQLGD  621 (640)
T ss_dssp             -----
T ss_pred             cccCC
Confidence            77654

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.4e-70  Score=604.60  Aligned_cols=511  Identities=25%  Similarity=0.312  Sum_probs=389.0

Q ss_pred             CCCCC-CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch
Q 006197           34 FPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (657)
Q Consensus        34 ~~~~~-~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~  112 (657)
                      ||+.- +...||.++|+++|+++||++|+++.   +  +++++++||+||.++++++|++|.+.|+++||+|+++++|++
T Consensus         2 ~p~~~~~~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~   76 (534)
T d1v25a_           2 FPSTMMDEELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHF   76 (534)
T ss_dssp             CBCCBCCCCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH
T ss_pred             CCCccCCCCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCH
Confidence            45333 45558999999999999999999976   3  345678999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhh
Q 006197          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (657)
Q Consensus       113 e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  192 (657)
                      ++++++|||+++|++++|++|.++.+++.++|+.+++++++++........... ........++........       
T Consensus        77 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------  148 (534)
T d1v25a_          77 RHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAPE-------  148 (534)
T ss_dssp             HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCCT-------
T ss_pred             HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHh-hcccccceeEEeeccccc-------
Confidence            999999999999999999999999999999999999999999998777654433 233445555544433210       


Q ss_pred             CCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEe
Q 006197          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (657)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (657)
                         ........ .   ..........++++++++|||||||.||+|+++|.+++..........   ......+|++++.
T Consensus       149 ---~~~~~~~~-~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~  218 (534)
T d1v25a_         149 ---GYLAYEEA-L---GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPV  218 (534)
T ss_dssp             ---TCEEHHHH-C---CSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEEC
T ss_pred             ---cccccccc-c---cccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccc
Confidence               01111111 0   112233455788999999999999999999999999986654432221   2267889999999


Q ss_pred             cChhHHHHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006197          273 LPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKL  350 (657)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (657)
                      +|++|.+++...+..+..|+++++...  ++..+...+.++++|++.++|.++..+........                
T Consensus       219 ~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~----------------  282 (534)
T d1v25a_         219 VPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------  282 (534)
T ss_dssp             SCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------
T ss_pred             cchhhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccc----------------
Confidence            999999999888888888888777654  89999999999999999999999998876533221                


Q ss_pred             HHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCc-
Q 006197          351 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-  429 (657)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~-  429 (657)
                                                ..+++||.+++||++++++..+++.+ ++.++++.||+||++..++....... 
T Consensus       283 --------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~  335 (534)
T d1v25a_         283 --------------------------HRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHL  335 (534)
T ss_dssp             --------------------------CCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGG
T ss_pred             --------------------------ccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccc
Confidence                                      12259999999999999999999886 58999999999999998876543321 


Q ss_pred             ---------cccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEE
Q 006197          430 ---------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ  499 (657)
Q Consensus       430 ---------~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~  499 (657)
                               ...+++|.|++|++++|+| +++...+.+.++.|||+|+|++++.||+++++.+...| .||||+|||+|+
T Consensus       336 ~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~  414 (534)
T d1v25a_         336 ESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAV  414 (534)
T ss_dssp             TTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEE
T ss_pred             cccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeE
Confidence                     2347899999999999999 88888888778899999999999999999999999988 899999999999


Q ss_pred             EcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCcc
Q 006197          500 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS  576 (657)
Q Consensus       500 ~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~  576 (657)
                      +++||+++++||.+|+|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++.+..            
T Consensus       415 ~~~~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~------------  481 (534)
T d1v25a_         415 WDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP------------  481 (534)
T ss_dssp             ECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------
T ss_pred             ECCCccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCC------------
Confidence            9999999999999999997 8999999999999999999999999986554   37888888875431            


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197          577 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  643 (657)
Q Consensus       577 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~  643 (657)
                           ..        +++.+...+..||+|++|+.|+++++      +|+|++|||+|++|+++|++
T Consensus       482 -----~~--------~~~~~~~~~~~l~~~~~P~~i~~~~~------lP~t~~GKi~R~~lr~~~~~  529 (534)
T d1v25a_         482 -----TP--------EELNEHLLKAGFAKWQLPDAYVFAEE------IPRTSAGKFLKRALREQYKN  529 (534)
T ss_dssp             -------------------------CCCTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred             -----CH--------HHHHHHHHHhcCCcCCCccEEEEECC------CCCCCCccccHHHHHHHHHh
Confidence                 00        11122212468999999999998765      49999999999999998864

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=8.9e-69  Score=591.20  Aligned_cols=517  Identities=24%  Similarity=0.267  Sum_probs=397.8

Q ss_pred             CCCCCCCCCcCcHHHHHHHHHHcC---CCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 006197           32 NGFPSVDSDLNTAWDIFSMSVQKY---PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYG  108 (657)
Q Consensus        32 ~~~~~~~~~~~~i~~~l~~~a~~~---p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~  108 (657)
                      +|-|-.|-...++.++|.+.++++   |+.+|+++.   .+.    +++||+||.+++.++|++|+++|+++||+|++++
T Consensus         7 ~p~p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~   79 (541)
T d1lcia_           7 GPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCS   79 (541)
T ss_dssp             CCCCSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEe
Confidence            355556666779999999999988   555566543   222    6899999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHH
Q 006197          109 ANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKE  188 (657)
Q Consensus       109 ~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  188 (657)
                      +|++++++++|||+++|++++|+++.++.+++.++|+.++++++|++.+..+.+.+.. ...+..+.+++++....    
T Consensus        80 ~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----  154 (541)
T d1lcia_          80 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD----  154 (541)
T ss_dssp             SSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC----
T ss_pred             CCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcc-ccccccceeeeecCCcc----
Confidence            9999999999999999999999999999999999999999999999998877665543 34456666766654321    


Q ss_pred             HHhhCCcceeeHHHHHhcCc------cCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCC
Q 006197          189 MAVQTGIKPYSWDEFLHLGK------VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK  262 (657)
Q Consensus       189 ~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~  262 (657)
                           ......+........      ....+.....++++++++|||||||.||+|++||++++.........+.  ...
T Consensus       155 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~--~~~  227 (541)
T d1lcia_         155 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQ  227 (541)
T ss_dssp             -----BTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--SCC
T ss_pred             -----ccccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc--ccc
Confidence                 111223333322211      1122233446788999999999999999999999999887666544331  125


Q ss_pred             CCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006197          263 MTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (657)
Q Consensus       263 ~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~  341 (657)
                      +.+++++++.+|++|.++....+..+..++..+.... +.......+.++++|.+..+|.++..+......         
T Consensus       228 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~---------  298 (541)
T d1lcia_         228 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI---------  298 (541)
T ss_dssp             CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG---------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccc---------
Confidence            7889999999999999999888888888888777665 889999999999999999999998887642110         


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCC-ceeeeccCCCCCCc
Q 006197          342 RRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGP  420 (657)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~  420 (657)
                                               .        ....++++.+++||+++++...+++.+.++. .++++||+||+++.
T Consensus       299 -------------------------~--------~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~  345 (541)
T d1lcia_         299 -------------------------D--------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA  345 (541)
T ss_dssp             -------------------------G--------GSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSC
T ss_pred             -------------------------c--------ccccccceEEEecccccccccccccccccCCceeeecCCccccCce
Confidence                                     0        0112489999999999999999999988864 58999999999998


Q ss_pred             cccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEE
Q 006197          421 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ  499 (657)
Q Consensus       421 ~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~  499 (657)
                      ++........ .+++|+|+|+++++|+| ++++ .+++.|+.|||+|+|++++.||++++..+...+ .+|||+|||+|+
T Consensus       346 ~~~~~~~~~~-~~svG~p~~~~~~~i~d-~d~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~  422 (541)
T d1lcia_         346 ILITPEGDDK-PGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY  422 (541)
T ss_dssp             SEECCCC----CCCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEE
T ss_pred             EEecCcccCC-CCccccccCCCEEEEEE-CCCC-cCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeE
Confidence            8877665544 48999999999999998 4433 456667899999999999999999998888777 689999999999


Q ss_pred             EcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCcc
Q 006197          500 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS  576 (657)
Q Consensus       500 ~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~  576 (657)
                      +|++|++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++.        ..   
T Consensus       423 ~~~~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~---  490 (541)
T d1lcia_         423 WDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK--------TM---  490 (541)
T ss_dssp             ECTTCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC---
T ss_pred             EcCCeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCC--------CC---
Confidence            9999999999999999997 7999999999999999999999999986543   4788999987653        11   


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhCCCCCc-eeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197          577 FLELCSLVQLQNYILSELKNAAERNKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  644 (657)
Q Consensus       577 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~  644 (657)
                           ..        ++|+++++ +.|+++ ++|+.|+++++.      |+|++|||+|++|++++.++
T Consensus       491 -----~~--------~~l~~~~~-~~l~~~~~~p~~i~~v~~l------P~t~~GKi~r~~l~~~~~~~  539 (541)
T d1lcia_         491 -----TE--------KEIVDYVA-SQVTTAKKLRGGVVFVDEV------PKGLTGKLDARKIREILIKA  539 (541)
T ss_dssp             -----CH--------HHHHHHHH-HHSCGGGSCTTEEEEESSC------CC-----CCHHHHHHHHHHH
T ss_pred             -----CH--------HHHHHHHH-HhCCccccCCcEEEEeCCC------CcCCCcCccHHHHHHHHHHh
Confidence                 11        12333333 345555 578889887654      99999999999999998764

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.5e-65  Score=559.97  Aligned_cols=473  Identities=20%  Similarity=0.220  Sum_probs=390.0

Q ss_pred             CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (657)
Q Consensus        40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l  119 (657)
                      ...||.++|+++|+++||++|+++.    +     +++||+||.++++++|.+|+++|+++||+|+++++|++++++++|
T Consensus        21 ~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~l   91 (514)
T d1amua_          21 RDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL   91 (514)
T ss_dssp             TTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHH
Confidence            6779999999999999999999985    3     689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (657)
Q Consensus       120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (657)
                      ||+++|++++|+++.++.+++.++++.++++++|++......+......    . ........                 
T Consensus        92 a~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~----~-~~~~~~~~-----------------  149 (514)
T d1amua_          92 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN----G-QVEIFEED-----------------  149 (514)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC----S-EEEECCCS-----------------
T ss_pred             HHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccc----c-cccccccc-----------------
Confidence            9999999999999999999999999999999999999877765443221    1 11111111                 


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (657)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (657)
                          ............+..++++++|+|||||||.||+|.+||.++..........+     ....++++++.+|++|.+
T Consensus       150 ----~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  220 (514)
T d1amua_         150 ----TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA  220 (514)
T ss_dssp             ----TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred             ----cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceecccccc
Confidence                00111122233445688999999999999999999999999999999887777     889999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q 006197          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM  355 (657)
Q Consensus       280 g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (657)
                      ++...+.++..|+++++...    +.....+.+..+.++.+..+|.......                            
T Consensus       221 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  272 (514)
T d1amua_         221 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD----------------------------  272 (514)
T ss_dssp             HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC----------------------------
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccccc----------------------------
Confidence            99888889999999888764    6677888999999999999987643310                            


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC--ccccC
Q 006197          356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCMVG  433 (657)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~--~~~~~  433 (657)
                                          ...+++++.++++|+++++++.+++.+  +..+++.||+||++.+++......  ....+
T Consensus       273 --------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  330 (514)
T d1amua_         273 --------------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSV  330 (514)
T ss_dssp             --------------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSC
T ss_pred             --------------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccCccc
Confidence                                011258999999999999999888765  678999999999999887665543  23346


Q ss_pred             ccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-------cCCccccCceEEEcCCCcE
Q 006197          434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-------IDGWFHTGDIGQILPNGVV  506 (657)
Q Consensus       434 ~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-------~~g~~~TGDl~~~~~~G~l  506 (657)
                      +.|.+.++.++.+.| +++.  +++.|+.|||+|+||.++.||++++..+.+.|       .+|||+|||+|++|++|+|
T Consensus       331 ~~~~~~~~~~v~~~d-~~~~--~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l  407 (514)
T d1amua_         331 PIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNI  407 (514)
T ss_dssp             CCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCE
T ss_pred             ccccceeeeeEeeec-ccce--ecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcE
Confidence            778899999999998 6555  44456799999999999999999999888776       2689999999999999999


Q ss_pred             EEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhcc
Q 006197          507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  583 (657)
Q Consensus       507 ~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (657)
                      ++.||.+|+|++ +|++|+|.+||+.|.+||+|.+|+|++.++.   +.++|+|+++++.                  ..
T Consensus       408 ~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~------------------~~  468 (514)
T d1amua_         408 EYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------------------PL  468 (514)
T ss_dssp             EEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC------------------CH
T ss_pred             EEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCC------------------CH
Confidence            999999999997 7999999999999999999999999996544   3788998887753                  11


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197          584 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  639 (657)
Q Consensus       584 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~  639 (657)
                              ++|+++++ ++|++|++|..|+++++      +|+|++|||+|++|++
T Consensus       469 --------~~l~~~~~-~~l~~~~~p~~i~~v~~------lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         469 --------EQLRQFSS-EELPTYMIPSYFIQLDK------MPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             --------HHHHHHHH-HHSCGGGSCSEEEECSS------CCBCTTSSBCGGGSCC
T ss_pred             --------HHHHHHHH-hhCCcccCceEEEEeCC------CCCCCCcChhHHhcCC
Confidence                    22334443 57999999999998765      4999999999999876

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.5e-64  Score=556.48  Aligned_cols=500  Identities=18%  Similarity=0.155  Sum_probs=403.8

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ..||.++|+++|+++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        24 ~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA   94 (536)
T d1mdba_          24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (536)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence            369999999999999999999975   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccc----cccccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD----CRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (657)
                      |+++|++++|++|.++.+++.++|+.++++++++++..........    ..........+......            .
T Consensus        95 ~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~  162 (536)
T d1mdba_          95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------E  162 (536)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------T
T ss_pred             HHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------c
Confidence            9999999999999999999999999999999999875433211110    01111222222221111            0


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                      ...+.++    ...........++|+++|+|||||||.||+|++||+++...+......+     .+.++|++++.+|++
T Consensus       163 ~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~  233 (536)
T d1mdba_         163 FLPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA  233 (536)
T ss_dssp             SEEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred             ccchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----ccccccccccccccc
Confidence            1111111    1223344456789999999999999999999999999999999888777     899999999999999


Q ss_pred             HHHHHHH--HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM  353 (657)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (657)
                      |.+++..  ....+..|.+++..+. ++..+...+++++++.+..+|..+..+.......                    
T Consensus       234 ~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  293 (536)
T d1mdba_         234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR--------------------  293 (536)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------
T ss_pred             cccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccc--------------------
Confidence            9999864  3334555677766654 8999999999999999999999888765432211                    


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccC
Q 006197          354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  433 (657)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~  433 (657)
                                            ....++++.+++||+++++...+++.+.++......|+.+|.+..+...........+
T Consensus       294 ----------------------~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (536)
T d1mdba_         294 ----------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVN  351 (536)
T ss_dssp             ----------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHH
T ss_pred             ----------------------ccccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccccC
Confidence                                  0112589999999999999999999999999999999999988776666655555568


Q ss_pred             ccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecC
Q 006197          434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK  512 (657)
Q Consensus       434 ~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~  512 (657)
                      ++|.|+++....++..+++  .+++.++.|||+++|+.++.||++++..+...+ .+|||+|||++++++||+|++.||.
T Consensus       352 ~~g~p~~~~~~~~v~~~~g--~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~  429 (536)
T d1mdba_         352 TQGKPMSPYDESRVWDDHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRA  429 (536)
T ss_dssp             CCCEESSTTCEEEEECTTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEG
T ss_pred             CcccCCCCcceEEEEcCCC--CeecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCc
Confidence            9999987655555552444  455567899999999999999999998888887 7899999999999999999999999


Q ss_pred             cceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHH
Q 006197          513 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  589 (657)
Q Consensus       513 ~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (657)
                      +|+|++ +|++|+|.+||+.|.+||+|.+|+|++.+++   +.++|+|++.++..                 ..      
T Consensus       430 ~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~-----------------~~------  485 (536)
T d1mdba_         430 KDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAP-----------------KA------  485 (536)
T ss_dssp             GGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCC-----------------CH------
T ss_pred             ceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCC-----------------CH------
Confidence            999997 7999999999999999999999999986543   47899998876431                 11      


Q ss_pred             HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006197          590 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  646 (657)
Q Consensus       590 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~  646 (657)
                        ++|+++++++.||.|++|+.|+++++.      |+|++|||+|++|+++|+++|.
T Consensus       486 --~~l~~~l~~~~l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~l~  534 (536)
T d1mdba_         486 --AELKAFLRERGLAAYKIPDRVEFVESF------PQTGVGKVSKKALREAISEKLL  534 (536)
T ss_dssp             --HHHHHHHHHTTCCGGGSCSEEEECSSC------CBCTTSCBCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHhcCCCcCcCccEEEEECCC------CcCCCcCccHHHHHHHHHHHHh
Confidence              223444444569999999999997664      9999999999999999988765

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=3.5e-61  Score=524.61  Aligned_cols=492  Identities=20%  Similarity=0.218  Sum_probs=388.6

Q ss_pred             cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (657)
Q Consensus        41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA  120 (657)
                      ++||+++|+++|+++||++|+++.   ++.    +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   73 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence            579999999999999999999986   433    7899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (657)
Q Consensus       121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (657)
                      |+++|++++|++|.++.+++.++++.++++++|++........  .... .....++.+                     
T Consensus        74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~--~~~~-~~~~~~i~~---------------------  129 (503)
T d3cw9a1          74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA--IFQS-GSGARIIFL---------------------  129 (503)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHH--HHHT-TCCCEEEEH---------------------
T ss_pred             HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHH--Hhhh-ccccccccc---------------------
Confidence            9999999999999999999999999999999998876432111  1111 122222222                     


Q ss_pred             HHHHhcCc----cCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197          201 DEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (657)
Q Consensus       201 ~~l~~~~~----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (657)
                      .++.....    ..........++++++++|||||||.||+|.++|+++...+......+   .......+++++.+|++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~  206 (503)
T d3cw9a1         130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY  206 (503)
T ss_dssp             HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred             hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence            22222111    122333455788999999999999999999999999999888765544   12456778999999999


Q ss_pred             HHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhh
Q 006197          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMN  354 (657)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (657)
                      |..+... .+.+...++.+++... ++..+...+..++++++..+|..+..+..........                  
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  268 (503)
T d3cw9a1         207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS------------------  268 (503)
T ss_dssp             SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTT------------------
T ss_pred             cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccc------------------
Confidence            8887775 4556677777776665 9999999999999999999999988776533221111                  


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCc
Q 006197          355 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT  434 (657)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~  434 (657)
                                            ...++||.+++||++++++....+...++..+.+.||+||++..+.......... .+
T Consensus       269 ----------------------~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~-~~  325 (503)
T d3cw9a1         269 ----------------------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE-MA  325 (503)
T ss_dssp             ----------------------CCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE-EB
T ss_pred             ----------------------ccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc-cc
Confidence                                  1125899999999999999999999999999999999999988777665544332 33


Q ss_pred             cCcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc-CCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCc
Q 006197          435 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  513 (657)
Q Consensus       435 ~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g-~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~  513 (657)
                      .+.+.+.....+.+ ..+  ..++.|+.|++.+.+ +....+|++++..+.+.|.+|||+|||+|++++||.|+++||.|
T Consensus       326 ~~~~~~~~~~~~~~-~~~--~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~GR~~  402 (503)
T d3cw9a1         326 PGFFSEVRIVRIGG-GVD--EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVD  402 (503)
T ss_dssp             CCTTCCEEEECTTS-CTT--CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESS
T ss_pred             ccccccceeeeeec-ccC--cccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCCCcC
Confidence            33444434333333 222  344566789887776 55567899999999999999999999999999999999999999


Q ss_pred             ceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHH
Q 006197          514 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  590 (657)
Q Consensus       514 d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (657)
                      |+||+ +|++|+|.+||+.|.+||+|.+|+|++.+++   +.++|+|+++.+.        ..        .        
T Consensus       403 d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~--------~--------  457 (503)
T d3cw9a1         403 DMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TL--------S--------  457 (503)
T ss_dssp             CCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C--------
T ss_pred             CeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCC--------CC--------C--------
Confidence            99997 7999999999999999999999999986543   4799999987643        00        1        


Q ss_pred             HHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006197          591 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  641 (657)
Q Consensus       591 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~  641 (657)
                      .++|++++++.+||+|++|+.|+++++      +|+|++|||+|++|++++
T Consensus       458 ~~~l~~~~~~~~l~~~~~P~~i~~v~~------~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         458 ADALDTFCRSSELADFKRPKRYFILDQ------LPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             HHHHHHHHHHSSSCGGGSCSEEEECSC------CCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCCccEEEEECC------CCcCCCcCccHHHHHHhc
Confidence            123445554578999999999998765      499999999999999875