Citrus Sinensis ID: 006240

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-----

MTGSGRRSSARSRIKSKTDANEDGRLRNAGDHRRNTSRDHTSLRLLNVNIKMLLGFTVFTFFIIWFLINRLVNPDQEPETPRVITPFPAPKLMDLPMFQGEHKESLYWGTYRPHVYLGIRARTPRSLVAGLMWLGVKDGRYHLRHVCQDSDELSKYGWTRHNGRDFGHQLLVDQDLTLETSFLKSKGDGSGYGGDWALRLDLQSEESRWNNDMQRTGYLFFYVADEDGNALSLGRDMFDIHESSLLAIGSRADIGGWQLHLKGMESLEVHYSGFRTPHIHNLSDLVLENLAAQAAMFNRLQLSDTSVSSPNILVFQISARIPFKADIAFVSGTGVKTSRVEERLSSLTGTSLTSLLKEKQSEFDAKFENCFKMAAKLDSESVVVGKAAIGNMLGGIGYFYGQSKVSLPKNTKLKNHDNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHPSEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTELI

ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEcccccccccccccEEccccccccccccEEEcccccEEEEEEEcccEEEEEEEEEccccccccccccEEEEEEEcccccccccccEEEEEEEEEEcccccccccccccccccccEEEEEcccccccEEEEEEcccccEEEEcccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEccccEEEEEEEccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHccccccccc

ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHccccccccccccccccEEEEEccccccccHHHEEEEccccccccEEEEEEccccccccccEEEccccccEEEEEEccEEEEEEEEEEccccccccccEEEEEEEEcccccccccccccEEEEEEEEEcccccEEccccccccccccEEEEEcccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccEEEEEEEEcccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEccccEcccccccccccccccccccccHEccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHcccccccHHHHccHHHHHcccHHEEEEcccccccHHHHHHHHHHHHHHcHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHcccccccc

mtgsgrrssarsriksktdanedgrlrnagdhrrntsrdhtsLRLLNVNIKMLLGFTVFTFFIIWFLINrlvnpdqepetprvitpfpapklmdlpmfqgehkeslywgtyrphvylgirartpRSLVAGLMWLgvkdgryhlrhvcqdsdelskygwtrhngrdfghqllvdqDLTLETSFlkskgdgsgyggdwalRLDLQSEESrwnndmqrtGYLFFYVadedgnalslgrdmfdihESSLLAIGSRADIGGWQLHLKGMESLEvhysgfrtphihnlsDLVLENLAAQAAMFNRlqlsdtsvsspniLVFQIsaripfkadiafvsgtgvktsRVEErlssltgtSLTSLLKEKQSEFDAKFENCFKMAAKLDSESVVVGKAAIGNMLGGIGYfygqskvslpkntklknhdnfllywpaelytavpsrpffprgflwdegfHQLLIWRWDVRICLDILGHWLdlmntdgwipreqilgaealskvpeefvlqhptngnppTLFLVLRELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNttqsgkemssyfwhgrdtttirelnpktlssglddyprashpseeerHLDLRCWMLLAVDSLHSIAELFESSsehkkeygstatllSDFKFLISFILILHTELI

mtgsgrrssarsriksktdanedgrlrnagdhrrntsrdhtslrLLNVNIKMLLGFTVFTFFIIWFLINRLVNPDQEPETPRVITPFPAPKLMDLPMFQGEHKESLYWGTYRPHVYLGIRARTPRSLVAGLMWLGVKDGRYHLRHVCQDSDELSKYGWTRHNGRDFGHQLLVDQDLTLETSFLkskgdgsgyggDWALRLDLQSEESRWNNDMQRTGYLFFYVADEDGNALSLGRDMFDIHESSLLAIGSRADIGGWQLHLKGMESLEVHYSGFRTPHIHNLSDLVLENLAAQAAMFNRLQLSDTSVSSPNILVFQISARIPFKADIAFVSgtgvktsrveerlssltgtsltsllKEKQSEFDAKFENCFKMAAKLDSESVVVGKAAIGNMLGGIGYFYGQSKVSLPKNTKLKNHDNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNttqsgkemssYFWHGRDTTTIRELNPKTLSSGLDDYPRASHPSEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTELI

MTgsgrrssarsrIKSKTDANEDGRLRNAGDHRRNTSRDHTSLRLLNVNIKMLLGFTVFTFFIIWFLINRLVNPDQEPETPRVITPFPAPKLMDLPMFQGEHKESLYWGTYRPHVYLGIRARTPRSLVAGLMWLGVKDGRYHLRHVCQDSDELSKYGWTRHNGRDFGHQLLVDQDLTLETSFLkskgdgsgyggdWALRLDLQSEESRWNNDMQRTGYLFFYVADEDGNALSLGRDMFDIHESSLLAIGSRADIGGWQLHLKGMESLEVHYSGFRTPHIHNLSDLVLENLAAQAAMFNRLQLSDTSVSSPNILVFQISARIPFKADIAFVSGTGVKTSRVEERlssltgtsltsllKEKQSEFDAKFENCFKMAAKLDSESVVVGKAAIGNMLGGIGYFYGQSKVSLPKNTKLKNHDNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHPSEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTELI

******************************************LRLLNVNIKMLLGFTVFTFFIIWFLINRLVN*********VITPFPAPKLMDLPMFQGEHKESLYWGTYRPHVYLGIRARTPRSLVAGLMWLGVKDGRYHLRHVCQDSDELSKYGWTRHNGRDFGHQLLVDQDLTLETSFLKSKGDGSGYGGDWALRLDLQSEESRWNNDMQRTGYLFFYVADEDGNALSLGRDMFDIHESSLLAIGSRADIGGWQLHLKGMESLEVHYSGFRTPHIHNLSDLVLENLAAQAAMFNRLQLSDTSVSSPNILVFQISARIPFKADIAFVSGTGVKT*************************FDAKFENCFKMAAKLDSESVVVGKAAIGNMLGGIGYFYGQSKVSLPKNTKLKNHDNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTI**************************HLDLRCWMLLAVDSLHSIAELFE********YGSTATLLSDFKFLISFILILHT***

*********************************************LNVNIKMLLGFTVFTFFIIWFLINRLVNPDQEPETPRVITPFPAPK**********HKESLYWGTYRPHVYLGIRARTPRSLVAGLMWLGVKDGRYHLRHVCQDSDELSKYGWTRHNGRDFGHQLLVDQDLTLETSFLKSKGDGSGYGGDWALRLDL************RTGYLFFYVADEDG***********************ADIGGWQLHLKGMESLEVHYSGFRTPHIHNLSDLVLENLAAQA*************S**NILVFQISARIPFKADIAFVS********************LTSLLKEKQSEFDAKFENCFKMAAKLDSESVVVGKAAIGNMLGGIGYFYGQSKV***************LYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAI************ISSFLERALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHPSEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTEL*

********************NEDGRLRNAGDHRRNTSRDHTSLRLLNVNIKMLLGFTVFTFFIIWFLINRLVNPDQEPETPRVITPFPAPKLMDLPMFQGEHKESLYWGTYRPHVYLGIRARTPRSLVAGLMWLGVKDGRYHLRHVCQDSDELSKYGWTRHNGRDFGHQLLVDQDLTLETSFLKSKGDGSGYGGDWALRLDLQSEESRWNNDMQRTGYLFFYVADEDGNALSLGRDMFDIHESSLLAIGSRADIGGWQLHLKGMESLEVHYSGFRTPHIHNLSDLVLENLAAQAAMFNRLQLSDTSVSSPNILVFQISARIPFKADIAFVSGTGVKTSRVEERLSSLTGTSLTSLLKEKQSEFDAKFENCFKMAAKLDSESVVVGKAAIGNMLGGIGYFYGQSKVSLPKNTKLKNHDNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTIRELNPKTLSSGLDD***********RHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTELI

***************************************HTSLRLLNVNIKMLLGFTVFTFFIIWFLINRLVNPDQ***TPRVITPFPAPKLMDLPMFQGEHKESLYWGTYRPHVYLGIRARTPRSLVAGLMWLGVKDGRYHLRHVCQDSDELSKYGWTRHNGRDFGHQLLVDQDLTLETSFLKSKGDGSGYGGDWALRLDLQSEESRWNNDMQRTGYLFFYVADEDGNALSLGRDMFDIHESSLLAIGSRADIGGWQLHLKGMESLEVHYSGFRTPHIHNLSDLVLENLAAQAAMFNRLQLSDTSVSSPNILVFQISARIPFKADIAFVSGT*****R***RL*SLTGTSLTSLLKEKQSEFDAKFENCFKMAAKLDSESVVVGKAAIGNMLGGIGYFYGQSKVSLPKNTKLKNHDNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHPSEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTELI

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		655	2.2.26 [Sep-21-2011]
F4HTM3		852	Mannosyl-oligosaccharide	yes	no	0.977	0.751	0.651	0.0
Q84M89		789	Alpha-glucosidase 2 OS=Ar	no	no	0.865	0.718	0.622	0.0
Q80UM7		834	Mannosyl-oligosaccharide	yes	no	0.819	0.643	0.373	3e-95
Q13724		837	Mannosyl-oligosaccharide	yes	no	0.815	0.637	0.371	2e-94
O88941		834	Mannosyl-oligosaccharide	yes	no	0.813	0.639	0.376	2e-94
Q19426		796	Probable mannosyl-oligosa	yes	no	0.755	0.621	0.344	4e-82
O14255		808	Probable mannosyl-oligosa	yes	no	0.766	0.621	0.298	3e-58
P53008		833	Mannosyl-oligosaccharide	yes	no	0.453	0.356	0.310	3e-37

>sp\|F4HTM3\|GCS1_ARATH Mannosyl-oligosaccharide glucosidase GCS1 OS=Arabidopsis thaliana GN=GCS1 PE=1 SV=1	Back alignment and function desciption

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/648 (65%), Positives = 506/648 (78%), Gaps = 8/648 (1%)

Query: 1   MTGSGRRSSARSRIKSKT-DANEDGRLRNAGDHRRNTSRDHTSLRLLNVNIKMLLGFTVF 59
           MTG+ RRS AR RIKS +     D         RR   ++  S+     N+K+L+G  + 
Sbjct: 1   MTGASRRS-ARGRIKSSSLSPGSDEGSAYPPSIRRGKGKELVSIGAFKTNLKILVGLIIL 59

Query: 60  TFFIIWFLINRLVNPD---QEPETPRVITPFPAPKLMDLPMFQGEHKESLYWGTYRPHVY 116
              +I+F+INRLV       E + PRVITPFPAPK+MDL MFQGEHKESLYWGTYRPHVY
Sbjct: 60  GIIVIYFVINRLVRHGLLFDESQKPRVITPFPAPKVMDLSMFQGEHKESLYWGTYRPHVY 119

Query: 117 LGIRARTPRSLVAGLMWLGVKDGRYHLRHVCQDSDELSKYGWTRHNGRDFGHQLLVDQDL 176
            G+RARTP SLVAGLMWLGVKD  Y +RH C++SD+LS +GW  HNGRD+G Q LV+ D+
Sbjct: 120 FGVRARTPLSLVAGLMWLGVKDEMYVMRHFCENSDDLSTFGWREHNGRDYGRQELVENDM 179

Query: 177 TLETSFLKSKGDGSGYGGDWALRLDLQSEESRWNNDMQRTGYLFFYVADEDGNALSLGRD 236
            +ETSF+KSKGDG GYGGDWA+R+D++++    N+D++R+ +LFFY+ADE GN L+LG+D
Sbjct: 180 VIETSFVKSKGDGLGYGGDWAVRIDVKNKG--LNDDVKRSAHLFFYLADEGGNVLNLGQD 237

Query: 237 MFDIHESSLLAIGSRADIGGWQLHLKGMESLEVHYSGFRTPHIHNLSDLVLENLAAQAAM 296
             D   SSLL  GSR D+G WQ+HLK    LE HYSGF+TPHI+NLSDLV +NLA QA  
Sbjct: 238 GLDFQGSSLLVSGSREDVGDWQIHLKSQNQLETHYSGFKTPHIYNLSDLVQQNLALQARK 297

Query: 297 FNRLQLSDTSVSSPNILVFQISARIPFKADIAFVSGTGVKTSRVEERLSSLTGTSLTSLL 356
           F RLQLSDTS  S NI +FQIS R+PF  DI F+SG   ++S VE+RL+SLTG  L+ LL
Sbjct: 298 FGRLQLSDTSEDSSNIYIFQISGRLPFTIDIPFISGIKGESSNVEKRLTSLTGLPLSDLL 357

Query: 357 KEKQSEFDAKFENCFKMAAKLDSESVVVGKAAIGNMLGGIGYFYGQSKVSLPKNTKLKNH 416
           K+K  EFDAKF  CFK++ K DSE++ VG+ AI NMLGGIGYFYGQSK+ +PK+T+  + 
Sbjct: 358 KKKHQEFDAKFNECFKLSEKHDSETLGVGRTAIANMLGGIGYFYGQSKIYVPKSTQPGSR 417

Query: 417 DNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWDVRICLDILGHWLDLMNTDGW 476
           DNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWD+RI LDI+GHWLDL+N DGW
Sbjct: 418 DNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWDIRITLDIVGHWLDLLNIDGW 477

Query: 477 IPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFL 536
           IPREQILGAEALSKVPEEFV+Q+P+NGNPPTLFLV+R+LI AI+  KF A+E +E+ SFL
Sbjct: 478 IPREQILGAEALSKVPEEFVVQYPSNGNPPTLFLVIRDLIDAIRMEKFVASEKDEVLSFL 537

Query: 537 ERALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHPSEE 596
           ERA VRL+AWFQWFNT+Q GKE+ SYFWHGRD TT +ELNPKTLSSGLDDYPRASHPSE+
Sbjct: 538 ERASVRLDAWFQWFNTSQKGKEIGSYFWHGRDNTTTQELNPKTLSSGLDDYPRASHPSED 597

Query: 597 ERHLDLRCWMLLAVDSLHSIAELFESSSEHKKE-YGSTATLLSDFKFL 643
           ERH+DLRCWM LA D +HSI EL     +  KE Y ST  LLS+F  L
Sbjct: 598 ERHVDLRCWMYLAADCMHSITELLGKEDKLSKENYNSTVKLLSNFNLL 645

Cleaves the distal alpha 1,2-linked glucose residue from the Glc(3)Man(9)GlcNAc(2) oligosaccharide precursor. Required for the accumulation of seed storage proteins, the formation of protein bodies, cell differentiation, cellulose biosynthesis and organization (in cell-walls), cell shape determination and organization (e.g. epidermal cells), and embryo development. Involved in root development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 0EC: 6

>sp\|Q84M89\|GCS2_ARATH Alpha-glucosidase 2 OS=Arabidopsis thaliana GN=GCS2 PE=2 SV=1	Back alignment and function description

>sp\|Q80UM7\|MOGS_MOUSE Mannosyl-oligosaccharide glucosidase OS=Mus musculus GN=Mogs PE=2 SV=1	Back alignment and function description

>sp\|Q13724\|MOGS_HUMAN Mannosyl-oligosaccharide glucosidase OS=Homo sapiens GN=MOGS PE=1 SV=5	Back alignment and function description

>sp\|O88941\|MOGS_RAT Mannosyl-oligosaccharide glucosidase OS=Rattus norvegicus GN=Mogs PE=1 SV=1	Back alignment and function description

>sp\|Q19426\|GCS1_CAEEL Probable mannosyl-oligosaccharide glucosidase OS=Caenorhabditis elegans GN=F13H10.4 PE=1 SV=2	Back alignment and function description

>sp\|O14255\|GCS1_SCHPO Probable mannosyl-oligosaccharide glucosidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6G10.09 PE=3 SV=1	Back alignment and function description

>sp\|P53008\|CWH41_YEAST Mannosyl-oligosaccharide glucosidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CWH41 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		655
225425480		850	PREDICTED: mannosyl-oligosaccharide gluc	0.977	0.752	0.747	0.0
359473731		868	PREDICTED: mannosyl-oligosaccharide gluc	0.977	0.737	0.727	0.0
255547752		851	mannosyl-oligosaccharide glucosidase, pu	0.970	0.747	0.729	0.0
224110718		845	predicted protein [Populus trichocarpa]	0.978	0.758	0.699	0.0
449435055		853	PREDICTED: mannosyl-oligosaccharide gluc	0.978	0.751	0.669	0.0
356512363		852	PREDICTED: mannosyl-oligosaccharide gluc	0.981	0.754	0.657	0.0
22330487		852	glucosidase 1 [Arabidopsis thaliana] gi\|	0.977	0.751	0.651	0.0
343172034		827	glucosidase, partial [Silene latifolia]	0.972	0.770	0.641	0.0
26452859		852	putative alpha-glucosidase I [Arabidopsi	0.977	0.751	0.651	0.0
16506680		852	alpha-glucosidase I [Arabidopsis thalian	0.977	0.751	0.649	0.0

>gi\|225425480\|ref\|XP_002279616.1\| PREDICTED: mannosyl-oligosaccharide glucosidase isoform 1 [Vitis vinifera] gi\|297738422\|emb\|CBI27623.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1018 bits (2633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/646 (74%), Positives = 554/646 (85%), Gaps = 6/646 (0%)

Query: 1   MTGSGRRSSARSRIKSKTDANEDGRLRNAG---DHRRNTSRDHTSLRLLNVNIKMLLGFT 57
           M+G+GRRS ARSRIKS  D +E  R RN+    + R++   DH+ +R+LNVNIK LLGF 
Sbjct: 1   MSGNGRRS-ARSRIKSSADVDEFDRRRNSKPDREVRKDRIGDHSFIRILNVNIKALLGFV 59

Query: 58  VFTFFIIWFLINRLVNPDQEPETPRVITPFPAPKLMDLPMFQGEHKESLYWGTYRPHVYL 117
           V  FFI+ FLI  L+ P ++ + PRV+TPFPAPK+MDLP FQGEHKESLYWGTYRP VYL
Sbjct: 60  VLAFFIVLFLILHLMKPVEDAQRPRVVTPFPAPKIMDLPQFQGEHKESLYWGTYRPQVYL 119

Query: 118 GIRARTPRSLVAGLMWLGVKDGRYHLRHVCQDSDELSKYGWTRHNGRDFGHQLLVDQDLT 177
           GIRARTP+SLVAGLMW+GVKDGRY +RHVCQDSDELS YGWT HNGRD+GHQ+L+D  +T
Sbjct: 120 GIRARTPQSLVAGLMWIGVKDGRYFMRHVCQDSDELSTYGWTHHNGRDYGHQVLIDHGMT 179

Query: 178 LETSFLKSKGDGSGYGGDWALRLDLQSEESRWNNDMQRTGYLFFYVADEDGNALSLGRDM 237
           L TSFLKSK DGSGYGGDW +R+D++SE  +WN +M R+ +LFFY+ADEDGNALSL  D+
Sbjct: 180 LATSFLKSKEDGSGYGGDWTVRIDVKSE--KWNEEMLRSAHLFFYLADEDGNALSLSGDI 237

Query: 238 FDIHESSLLAIGSRADIGGWQLHLKGMESLEVHYSGFRTPHIHNLSDLVLENLAAQAAMF 297
            DI E+SLLA+GSR D+GGWQLHL+ ++ LEVHYSGFRTPHIHNLSDLV E+L  Q   F
Sbjct: 238 LDIRENSLLALGSRMDVGGWQLHLESVDDLEVHYSGFRTPHIHNLSDLVQESLGEQVRKF 297

Query: 298 NRLQLSDTSVSSPNILVFQISARIPFKADIAFVSGTGVKTSRVEERLSSLTGTSLTSLLK 357
            RLQL DTS +SPNILVFQISA++PFK DI F+SGTG+K+SRVEERL+SLTGTSLT  L 
Sbjct: 298 GRLQLPDTSDNSPNILVFQISAKVPFKIDIPFLSGTGLKSSRVEERLNSLTGTSLTRELI 357

Query: 358 EKQSEFDAKFENCFKMAAKLDSESVVVGKAAIGNMLGGIGYFYGQSKVSLPKNTKLKNHD 417
           EKQ+EFD KFE CF + +K+DSES++VGKAAIGNMLGGIGYFYGQSK+SLPKN   K+HD
Sbjct: 358 EKQNEFDNKFEKCFNLTSKVDSESLIVGKAAIGNMLGGIGYFYGQSKISLPKNNNFKSHD 417

Query: 418 NFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWDVRICLDILGHWLDLMNTDGWI 477
           NF+ YWPAELYTAVPSR FFPRGFLWDEGFHQLLIWRWD+RICLDI+GHWLDLMN DGWI
Sbjct: 418 NFISYWPAELYTAVPSRSFFPRGFLWDEGFHQLLIWRWDIRICLDIIGHWLDLMNIDGWI 477

Query: 478 PREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLE 537
           PREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVL +L+ ++K+NKFT+ ESNEISSFLE
Sbjct: 478 PREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLHDLVSSLKRNKFTSMESNEISSFLE 537

Query: 538 RALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHPSEEE 597
           RA VRLEAWFQWFNTTQSG EMSSYFWHGRD+TT RELNPKTLSSGLDDYPRASHPS EE
Sbjct: 538 RAFVRLEAWFQWFNTTQSGNEMSSYFWHGRDSTTTRELNPKTLSSGLDDYPRASHPSGEE 597

Query: 598 RHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFL 643
            H+DLRCWMLLA + +HSI ELF   +  +KEYGSTA LLSDF  L
Sbjct: 598 HHVDLRCWMLLAAECMHSITELFRKENGLEKEYGSTAKLLSDFDIL 643

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359473731\|ref\|XP_003631353.1\| PREDICTED: mannosyl-oligosaccharide glucosidase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255547752\|ref\|XP_002514933.1\| mannosyl-oligosaccharide glucosidase, putative [Ricinus communis] gi\|223545984\|gb\|EEF47487.1\| mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224110718\|ref\|XP_002315613.1\| predicted protein [Populus trichocarpa] gi\|222864653\|gb\|EEF01784.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449435055\|ref\|XP_004135311.1\| PREDICTED: mannosyl-oligosaccharide glucosidase-like [Cucumis sativus] gi\|449494905\|ref\|XP_004159679.1\| PREDICTED: mannosyl-oligosaccharide glucosidase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356512363\|ref\|XP_003524889.1\| PREDICTED: mannosyl-oligosaccharide glucosidase-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|22330487\|ref\|NP_176916.2\| glucosidase 1 [Arabidopsis thaliana] gi\|449061822\|sp\|F4HTM3.1\|GCS1_ARATH RecName: Full=Mannosyl-oligosaccharide glucosidase GCS1; AltName: Full=Alpha-glucosidase 1; Short=Glucosidase 1; AltName: Full=Protein KNOPF; AltName: Full=Protein MUNCHKIN gi\|332196532\|gb\|AEE34653.1\| glucosidase 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|343172034\|gb\|AEL98721.1\| glucosidase, partial [Silene latifolia]	Back alignment and taxonomy information

>gi\|26452859\|dbj\|BAC43508.1\| putative alpha-glucosidase I [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|16506680\|gb\|AAL17718.1\| alpha-glucosidase I [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		655
TAIR\|locus:2008778		852	GCS1 "glucosidase 1" [Arabidop	0.929	0.714	0.634	9.1e-219
TAIR\|locus:2032462		789	AT1G24320 [Arabidopsis thalian	0.865	0.718	0.596	2e-189
FB\|FBgn0030289		849	CG1597 [Drosophila melanogaste	0.816	0.630	0.407	1.3e-102
ZFIN\|ZDB-GENE-070112-412		841	mogs "mannosyl-oligosaccharide	0.870	0.677	0.365	2.2e-96
RGD\|69240		834	Mogs "mannosyl-oligosaccharide	0.474	0.372	0.440	1.5e-87
UNIPROTKB\|O88941		834	Mogs "Mannosyl-oligosaccharide	0.474	0.372	0.440	1.5e-87
MGI\|MGI:1929872		834	Mogs "mannosyl-oligosaccharide	0.477	0.375	0.419	2.4e-87
UNIPROTKB\|Q13724		837	MOGS "Mannosyl-oligosaccharide	0.473	0.370	0.439	3.9e-87
UNIPROTKB\|K7N7E7		839	LOC100515538 "Uncharacterized	0.474	0.370	0.440	5e-87
UNIPROTKB\|E2R8C9		836	MOGS "Uncharacterized protein"	0.476	0.373	0.439	6.4e-87

TAIR\|locus:2008778 GCS1 "glucosidase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2113 (748.9 bits), Expect = 9.1e-219, P = 9.1e-219
 Identities = 390/615 (63%), Positives = 470/615 (76%)

Query:    33 RRNTSRDHTSLRLLNVNIKMLLGFTVFTFFIIWFLINRLVNPD---QEPETPRVITPFPA 89
             RR   ++  S+     N+K+L+G  +    +I+F+INRLV       E + PRVITPFPA
Sbjct:    33 RRGKGKELVSIGAFKTNLKILVGLIILGIIVIYFVINRLVRHGLLFDESQKPRVITPFPA 92

Query:    90 PKLMDLPMFQGEHKESLYWGTYRPHVYLGIRARTPRSLVAGLMWLGVKDGRYHLRHVCQD 149
             PK+MDL MFQGEHKESLYWGTYRPHVY G+RARTP SLVAGLMWLGVKD  Y +RH C++
Sbjct:    93 PKVMDLSMFQGEHKESLYWGTYRPHVYFGVRARTPLSLVAGLMWLGVKDEMYVMRHFCEN 152

Query:   150 SDELSKYGWTRHNGRDFGHQLLVDQDLTLETSFLXXXXXXXXXXXXWALRLDLQSEESRW 209
             SD+LS +GW  HNGRD+G Q LV+ D+ +ETSF+            WA+R+D++++    
Sbjct:   153 SDDLSTFGWREHNGRDYGRQELVENDMVIETSFVKSKGDGLGYGGDWAVRIDVKNKGL-- 210

Query:   210 NNDMQRTGYLFFYVADEDGNALSLGRDMFDIHESSLLAIGSRADIGGWQLHLKGMESLEV 269
             N+D++R+ +LFFY+ADE GN L+LG+D  D   SSLL  GSR D+G WQ+HLK    LE 
Sbjct:   211 NDDVKRSAHLFFYLADEGGNVLNLGQDGLDFQGSSLLVSGSREDVGDWQIHLKSQNQLET 270

Query:   270 HYSGFRTPHIHNLSDLVLENLAAQAAMFNRLQLSDTSVSSPNILVFQISARIPFKADIAF 329
             HYSGF+TPHI+NLSDLV +NLA QA  F RLQLSDTS  S NI +FQIS R+PF  DI F
Sbjct:   271 HYSGFKTPHIYNLSDLVQQNLALQARKFGRLQLSDTSEDSSNIYIFQISGRLPFTIDIPF 330

Query:   330 VSGTGVKTSRVEERXXXXXXXXXXXXXKEKQSEFDAKFENCFKMAAKLDSESVVVGKAAI 389
             +SG   ++S VE+R             K+K  EFDAKF  CFK++ K DSE++ VG+ AI
Sbjct:   331 ISGIKGESSNVEKRLTSLTGLPLSDLLKKKHQEFDAKFNECFKLSEKHDSETLGVGRTAI 390

Query:   390 GNMLGGIGYFYGQSKVSLPKNTKLKNHDNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQ 449
              NMLGGIGYFYGQSK+ +PK+T+  + DNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQ
Sbjct:   391 ANMLGGIGYFYGQSKIYVPKSTQPGSRDNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQ 450

Query:   450 LLIWRWDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLF 509
             LLIWRWD+RI LDI+GHWLDL+N DGWIPREQILGAEALSKVPEEFV+Q+P+NGNPPTLF
Sbjct:   451 LLIWRWDIRITLDIVGHWLDLLNIDGWIPREQILGAEALSKVPEEFVVQYPSNGNPPTLF 510

Query:   510 LVLRELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQSGKEMSSYFWHGRDT 569
             LV+R+LI AI+  KF A+E +E+ SFLERA VRL+AWFQWFNT+Q GKE+ SYFWHGRD 
Sbjct:   511 LVIRDLIDAIRMEKFVASEKDEVLSFLERASVRLDAWFQWFNTSQKGKEIGSYFWHGRDN 570

Query:   570 TTIRELNPKTLSSGLDDYPRASHPSEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKE 629
             TT +ELNPKTLSSGLDDYPRASHPSE+ERH+DLRCWM LA D +HSI EL     +  KE
Sbjct:   571 TTTQELNPKTLSSGLDDYPRASHPSEDERHVDLRCWMYLAADCMHSITELLGKEDKLSKE 630

Query:   630 -YGSTATLLSDFKFL 643
              Y ST  LLS+F  L
Sbjct:   631 NYNSTVKLLSNFNLL 645

GO:0003824 "catalytic activity" evidence=IEA

GO:0004573 "mannosyl-oligosaccharide glucosidase activity" evidence=IEA

GO:0009311 "oligosaccharide metabolic process" evidence=IEA

GO:0004558 "alpha-glucosidase activity" evidence=IDA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009913 "epidermal cell differentiation" evidence=IMP

GO:0010053 "root epidermal cell differentiation" evidence=IMP

TAIR\|locus:2032462 AT1G24320 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

FB\|FBgn0030289 CG1597 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-070112-412 mogs "mannosyl-oligosaccharide glucosidase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|69240 Mogs "mannosyl-oligosaccharide glucosidase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|O88941 Mogs "Mannosyl-oligosaccharide glucosidase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1929872 Mogs "mannosyl-oligosaccharide glucosidase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13724 MOGS "Mannosyl-oligosaccharide glucosidase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|K7N7E7 LOC100515538 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R8C9 MOGS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4HTM3	GCS1_ARATH	3, ., 2, ., 1, ., 1, 0, 6	0.6512	0.9770	0.7511	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		655
pfam03200		775	pfam03200, Glyco_hydro_63, Mannosyl oligosaccharid	0.0

>gnl\|CDD\|217421 pfam03200, Glyco_hydro_63, Mannosyl oligosaccharide glucosidase	Back alignment and domain information

 Score =  754 bits (1949), Expect = 0.0
 Identities = 285/608 (46%), Positives = 359/608 (59%), Gaps = 44/608 (7%)

Query: 61  FFIIWFLINRLVNPDQEPETPRVITPFPAPKLMDLPMFQGEHKESLYWGTYRPHVYLGIR 120
               + L+  L          RV+TP  APK+ D   F G    SLYWGTYRPH+Y G+R
Sbjct: 8   IISYFLLLGYL-----STLAERVVTPLDAPKVNDPSQFSGASNPSLYWGTYRPHLYFGMR 62

Query: 121 ARTPRSLVAGLMWLGV--KDGRYHLRHVCQDSDELSKYGWTRHNGRDFGHQLLVDQDLTL 178
            R+P SLV GLMW      DG   +RH C+  D L  YGW  H+GR+FG Q +VDQ + L
Sbjct: 63  TRSPLSLVTGLMWYNQDSYDGTPSIRHFCEQGDGLKSYGWLEHDGRNFGRQEIVDQGIVL 122

Query: 179 ETSFLKSKGDGSGYGGDWALRLDLQSEESRWNNDMQRTGYLFFYVADEDGNALSLGRDMF 238
            T F+KS G    +GGDWA+R+ ++      + D      L FY+A E   + +LG  + 
Sbjct: 123 TTDFVKSPGGQ--HGGDWAVRIKVKPHGGAESVD---LTSLIFYLALEGEGSDTLGPHVS 177

Query: 239 DIHESSLLAIGSRADIGGWQLHLKGMES----LEVHYSGFRTPHIHNLSDLVLENLAAQA 294
           D      L  G   ++G + LHLK   S    L+ H+   R P +  LSD+V +NL    
Sbjct: 178 DGKGQLNLLSGESEELGKFTLHLKSPTSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSV 237

Query: 295 AMF-----------NRLQLSDTSVS-------SPNILVFQISARIPFKADIAFVSGTGVK 336
                           L L    V          N +  QI+ + PF+ DI F SG+   
Sbjct: 238 KELVEKYGTQGEKLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGPFEFDIVFESGST-- 295

Query: 337 TSRVEERLSSLTGTSLTSLLKEKQSEFDAKFENCFKMAAK-LDSESVVVGKAAIGNMLGG 395
                ER + LTG +LT  L++K+  F+ KF   F++  K  D E +   KAA+ N+LGG
Sbjct: 296 ----PERENQLTGENLTDKLEKKKKAFNKKFNKKFQLKEKGHDPEQLKFAKAALSNLLGG 351

Query: 396 IGYFYGQSKVSLPKNTKLKNHDNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRW 455
           IGYFYGQS V      +    D  +LYWPAEL+TAVPSRPFFPRGFLWDEGFHQLLI +W
Sbjct: 352 IGYFYGQSLVDRS--FESLQLDEPVLYWPAELFTAVPSRPFFPRGFLWDEGFHQLLISKW 409

Query: 456 DVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLREL 515
           D  + L+ILGHWLDL+N DGWIPREQILG EA SKVPEEFV+Q P N NPPTLFL L++L
Sbjct: 410 DSDLTLEILGHWLDLINADGWIPREQILGPEARSKVPEEFVVQSPENANPPTLFLALKKL 469

Query: 516 IYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTIREL 575
           + +I+   F   E+ +I SFL+RA  RL+ WF+WFNTTQSG    +Y W GRD TT REL
Sbjct: 470 LESIRAEGFYNNENEKILSFLKRAYPRLKTWFEWFNTTQSGPLEETYRWRGRDLTTTREL 529

Query: 576 NPKTLSSGLDDYPRASHPSEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTAT 635
           NPKTL+SGLDDYPRASHPS+ ERH+DLRCWM LA  S+ SIAE      +   +Y  T  
Sbjct: 530 NPKTLASGLDDYPRASHPSDAERHVDLRCWMALAARSMASIAEFLG-EDDDLYKYAKTEN 588

Query: 636 LLSDFKFL 643
           LL+D   L
Sbjct: 589 LLTDNDLL 596

This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63. They catalyze the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase EC:3.2.1.106 is the first enzyme in the N-linked oligosaccharide processing pathway. Length = 775

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		655
PF03200		801	Glyco_hydro_63: Mannosyl oligosaccharide glucosida	100.0
KOG2161		849	consensus Glucosidase I [Carbohydrate transport an	100.0
PRK10137		786	alpha-glucosidase; Provisional	99.7
PLN02567		554	alpha,alpha-trehalase	99.5
PF01204		512	Trehalase: Trehalase; InterPro: IPR001661 O-Glycos	98.72
PRK13271		569	treA trehalase; Provisional	98.4
PRK13270		549	treF trehalase; Provisional	98.2
PRK13272		542	treA trehalase; Provisional	98.04
PF05592		509	Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; Int	97.91
PF06202		370	GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR	97.33
TIGR01561		575	gde_arch glycogen debranching enzyme, archaeal typ	95.86
KOG0602		600	consensus Neutral trehalase [Carbohydrate transpor	95.27
PF04685		365	DUF608: Protein of unknown function, DUF608; Inter	94.48
COG3408		641	GDB1 Glycogen debranching enzyme [Carbohydrate tra	94.03
TIGR01577		616	oligosac_amyl oligosaccharide amylase. The name of	93.34
COG1626		558	TreA Neutral trehalase [Carbohydrate transport and	90.29

>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3	Back alignment and domain information

Probab=100.00  E-value=5.2e-177  Score=1515.58  Aligned_cols=563  Identities=47%  Similarity=0.824  Sum_probs=509.1

Q ss_pred             CCCCccccCCCCCCcCCCcCcccCCCCccccccCCCCCcccccCCCCCCceeeecccccCCCC--ceeeeeeccCCCCcc
Q 006240           78 PETPRVITPFPAPKLMDLPMFQGEHKESLYWGTYRPHVYLGIRARTPRSLVAGLMWLGVKDGR--YHLRHVCQDSDELSK  155 (655)
Q Consensus        78 ~~~~rv~tp~~~pk~~~~~~~~~~~n~sl~WGtYRP~lYFGmR~R~P~sL~~GLMW~~~~~~~--~~lRH~ceq~D~l~~  155 (655)
                      ++++||+||+++|||++++++++.+|++|||||||||||||||||+|+||++||||+++++.+  ..|||+|||+|||.+
T Consensus        22 ~~~~r~~tp~~~~~~~~~~~~~~~~n~sl~WGtYRP~lYFGmr~R~p~sl~~GLMW~~~~~~~~~~~iRH~CeQ~D~L~~  101 (801)
T PF03200_consen   22 SEAPRVNTPFPAPKVIDLSQFSGEHNDSLLWGTYRPNLYFGMRPRSPKSLLTGLMWFDQDSYDGQSKIRHTCEQGDGLAK  101 (801)
T ss_pred             cccccccCcCCCccccChhhhccccCccccccccCCcceEeeccCCCCCceeeeeeeeccccccccceeEeeecCCCcCC
Confidence            569999999999999999999999999999999999999999999999999999999886543  459999999999999


Q ss_pred             ccceeecCCcceeEEEEeCCeeEEEEEeecCCCCCCCCCCceEEEEeEecCccccCCCCcceEEEEEEecCCCCccccCC
Q 006240          156 YGWTRHNGRDFGHQLLVDQDLTLETSFLKSKGDGSGYGGDWALRLDLQSEESRWNNDMQRTGYLFFYVADEDGNALSLGR  235 (655)
Q Consensus       156 YgW~~hDGr~fG~Q~I~D~~~~L~TsFvK~~~~~~~~GgdW~vRI~g~~~~~~~~~~~~~~~sl~fY~~~E~~~~l~~~~  235 (655)
                      |||++||||+||+|+|+|++++|+|+|||+++  |.|||||+|||+|+++++   ..+...+|||||+++|+.+.+.++.
T Consensus       102 YGW~~HDGr~fG~Q~I~D~~~~ItTsFVK~~g--G~~GgdWavRI~g~~~~~---~~~~~~~Sl~fY~~~Eg~~~~~l~~  176 (801)
T PF03200_consen  102 YGWTEHDGRNFGRQEIVDNNVNITTSFVKSPG--GEHGGDWAVRISGKPRDG---SPPSQKISLFFYIALEGEGSLSLEP  176 (801)
T ss_pred             cCCeEccCCcccEEEEEeCCEEEEEEEEecCC--CCCCCcceEEEEEEecCC---CCCCceEEEEEEEecCCCCcccccc
Confidence            99999999999999999988999999999974  479999999999999876   2223389999999999998665543


Q ss_pred             CccccCCCceEEeeccCCCCceEEEEecCCC----ceeEEEEeecCccccchHHHHHHHHHHHhh-----------cccc
Q 006240          236 DMFDIHESSLLAIGSRADIGGWQLHLKGMES----LEVHYSGFRTPHIHNLSDLVLENLAAQAAM-----------FNRL  300 (655)
Q Consensus       236 ~~~~~~~~~~~~~G~s~~LG~F~i~~~~~~~----~~~~~~~~~~p~~~~~~d~v~~~l~~~~~~-----------~~~l  300 (655)
                      ...........++|.+++||+|+|++.+..+    .+++|+++.+|++|++||++++.|+.++++           ...+
T Consensus       177 ~~~~~~~~~~~i~G~s~~LG~F~i~~~~~~~~~~~~~~~~~s~~~p~~~~~kdi~~~~L~~~~~~~~~~~~~~~~~~~~~  256 (801)
T PF03200_consen  177 ELDDGDGSLVSISGESPELGDFTIRFSSNSSPEDPSETHYLSLRVPDVWKAKDIFQQSLQEQIQKLVEKYGEDSRPEDYL  256 (801)
T ss_pred             ccccccCCcceeeecCCCCCceEEEEEcCCCCCCcceEEEEEeeCCcHHHHHHHHHHHHHHHHHhhhcccccccccccCC
Confidence            2211123456899999999999999986653    688999999999999999999999887642           2234


Q ss_pred             ccCC-------CCCCCCcEEEEEEEEecCeEEEEEEecCCCCccchhhhhccCCchhhhhHHHHHHHHHHHHHHHhhccC
Q 006240          301 QLSD-------TSVSSPNILVFQISARIPFKADIAFVSGTGVKTSRVEERLSSLTGTSLTSLLKEKQSEFDAKFENCFKM  373 (655)
Q Consensus       301 ~L~~-------~~~~~~N~~~vQ~t~~~pf~~dI~F~S~~~~~~~~~~~r~~~lt~~~lt~~l~~~~~~F~~kFe~~F~l  373 (655)
                      .+++       ...+++||++||+|+++||+|||+|+|+++.+.      ...|+++.||++|++++++|++||+++|+|
T Consensus       257 ~~~~~~~~~~~~~~~~~N~~~vQ~t~~~~f~~dI~f~s~~~~~~------~~~l~~~~l~~~l~~~~~~f~~kF~~~F~l  330 (801)
T PF03200_consen  257 PLPDFFTLRNITNFENSNFHIVQKTFEGPFEFDIVFNSASAPQR------SDSLTGENLTELLEKHSKEFDQKFEKTFPL  330 (801)
T ss_pred             CcchhccccccCCCCCCcEEEEEEEecCCcEEEEEEecCCCccc------cCCCchHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            4443       345678999999999999999999999987642      236999999999999999999999999999


Q ss_pred             CCC-CChhhHHHHHHHHHhhcccceeeeccceecCCccccccccCCccccCCccccccCCCCCCCCCCCcchhhHhhhHH
Q 006240          374 AAK-LDSESVVVGKAAIGNMLGGIGYFYGQSKVSLPKNTKLKNHDNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLI  452 (655)
Q Consensus       374 ~~k-~~~~~~~fakaalSNLLGGIGYFYG~s~V~~~~~~~~~~~~~~~~~~p~~LfTaVPSR~fFPRGFlWDEGFH~l~i  452 (655)
                      .+| +++++++|||+||||||||||||||+|+|++.....+...+++++|||++||||||||+|||||||||||||||+|
T Consensus       331 ~~k~~~~~~~~fak~~lSNLlGGiGYfyG~s~v~~~~~~~~~~~~~~~~~~p~~LfTavPSRsfFPRGFlWDEGFH~L~i  410 (801)
T PF03200_consen  331 KAKGFSPEYVEFAKAALSNLLGGIGYFYGSSLVDREDDFESPHRNEPVLYWPAPLFTAVPSRSFFPRGFLWDEGFHQLLI  410 (801)
T ss_pred             CCCCCCHHHHHHHHHHHhhcccCceEEeccEEEEeecccccccccCccccCCccceeecCCCCCCCCcCchhhhhhhhhH
Confidence            999 6778899999999999999999999999997544445556788999999999999999999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHHHHHHHhccccccchhHH
Q 006240          453 WRWDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEI  532 (655)
Q Consensus       453 ~~WD~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~ll~~~~~~~~~~~~~~~~  532 (655)
                      ++||++||+|||+|||||||+|||||||||||+|||||||+||+||+|++||||||||+|++|+++++..+....+.+..
T Consensus       411 ~~wD~dls~eil~sWl~lm~~dGWIpREQILG~EArskVP~eF~vQ~p~~ANPPTl~l~l~~ll~~~~~~~~~~~~~~~~  490 (801)
T PF03200_consen  411 SRWDPDLSLEILASWLDLMNEDGWIPREQILGEEARSKVPAEFQVQYPSNANPPTLFLALEKLLDRLKAEKKSEDNSEED  490 (801)
T ss_pred             HHhCHHHHHHHHHHHHHhccccCCchhhhhcCHhHHhcCCHHHHcCCCCCCCCccHHHHHHHHHHHHhhccccccchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998765444455678


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCcceeeeCCCCcccccCCCCCCCCCCCCCCCCCCCCccccchHHHHHHHHHHH
Q 006240          533 SSFLERALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHPSEEERHLDLRCWMLLAVDS  612 (655)
Q Consensus       533 ~~fL~~~yprL~~wy~WF~~TQ~G~~~~~YrWrGR~~~~~~elNp~tL~SGLDDYPRa~~p~~~E~HvDL~sWm~~~a~~  612 (655)
                      .+||+++||||++||+||++||+|+++++||||||+.++++|||||||+|||||||||+||+.+|+||||+||||++|++
T Consensus       491 ~~~l~~~yp~L~~~~~wf~~tQ~G~~~~~yrWrGr~~~~~~~lnp~~L~SGlDDYPRa~~p~~~e~hvDl~sWMa~~a~~  570 (801)
T PF03200_consen  491 LEFLRRIYPRLKRWYNWFNTTQAGDIPGSYRWRGRDPTTDRELNPHTLTSGLDDYPRASHPSDSERHVDLTSWMAFFALN  570 (801)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcCCCCCccccccccCcCCCCCCCCCCCCCCccceechHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHhccChhhHhhhcccccCCC
Q 006240          613 LHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTEL  654 (655)
Q Consensus       613 m~~iA~~lg~~~d~~~~y~~~~~~l~d~~~ln~~hws~~~~~  654 (655)
                      |++||..||+++++ .+|.+.++.|+|+  ||++|||+++++
T Consensus       571 M~~IA~~L~~~d~~-~ef~~~~~~i~~~--l~~~hWdeedgf  609 (801)
T PF03200_consen  571 MARIALELGKEDDA-YEFFEHFEYISDA--LNKLHWDEEDGF  609 (801)
T ss_pred             HHHHHHHhcCcccH-HHHHHHHHHHHHH--HHHhcCCcccCc
Confidence            99999999999987 4589999999966  999999999985

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process

>KOG2161 consensus Glucosidase I [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10137 alpha-glucosidase; Provisional	Back alignment and domain information

>PLN02567 alpha,alpha-trehalase	Back alignment and domain information

>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3	Back alignment and domain information

>PRK13271 treA trehalase; Provisional	Back alignment and domain information

>PRK13270 treF trehalase; Provisional	Back alignment and domain information

>PRK13272 treA trehalase; Provisional	Back alignment and domain information

>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes	Back alignment and domain information

>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT	Back alignment and domain information

>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative	Back alignment and domain information

>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []	Back alignment and domain information

>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01577 oligosac_amyl oligosaccharide amylase	Back alignment and domain information

>COG1626 TreA Neutral trehalase [Carbohydrate transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		655
2z07_A		420	Putative uncharacterized protein TTHA0978; unchara	3e-13
3c68_A		761	Uncharacterized protein YGJK; GH63, processing alp	7e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2jg0_A		535	Periplasmic trehalase; family 37, hydrolase, inhib	3e-06

>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Length = 420	Back alignment and structure

 Score = 71.1 bits (173), Expect = 3e-13
 Identities = 28/184 (15%), Positives = 44/184 (23%), Gaps = 27/184 (14%)

Query: 431 VPSRPFFPRGFLWDEGFHQLLIWRWDVRICLDILGHWLDLMNT-DGWIPR-------EQI 482
           VP+   +P  +LWD  F  L   + D       L    D     DG +P           
Sbjct: 22  VPAHGLYPYQWLWDSAFIALGWTQVDWERAWQELLCLFDYGQGPDGMLPHIVFHEQSRDY 81

Query: 483 LGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLERALVR 542
                +                PP +  V+R L                          +
Sbjct: 82  FPGPDVWGREARAQPATSGITQPPVVATVVRYLYEKDPDRDRA-------RERARYLFPK 134

Query: 543 LEAWFQWFNTTQSGKEMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHPSEEERHLDL 602
           L A+ +W    +                           SG+D+ P    P       +L
Sbjct: 135 LLAFHRWLYHARDPYRTGLVVIVHP------------WESGMDNSPAWDKPLSRVPVENL 182

Query: 603 RCWM 606
             + 
Sbjct: 183 PPYE 186

PyMOL of 2z07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A* Length = 535	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		655
2jg0_A		535	Periplasmic trehalase; family 37, hydrolase, inhib	99.88
3c68_A		761	Uncharacterized protein YGJK; GH63, processing alp	99.78
2z07_A		420	Putative uncharacterized protein TTHA0978; unchara	99.78
2okx_A		956	Rhamnosidase B; alpha barrel, glycoside hydrolase	98.63
3cih_A		739	Putative alpha-rhamnosidase; structural genomics,	97.34
1v7w_A		807	Chitobiose phosphorylase; beta-sandwich, (alpha/al	97.3
3qde_A		811	Cellobiose phosphorylase; cellulase, phosphate, tr	96.54
3rrs_A		822	Cellobiose phosphorylase; GH94, alpha barrel, disa	95.81

>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*	Back alignment and structure

Probab=99.88  E-value=1.2e-23  Score=233.86  Aligned_cols=197  Identities=16%  Similarity=0.180  Sum_probs=155.2

Q ss_pred             cccccCC--CCCCCCCC-----CcchhhHhhhHHHhhh-hHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccc
Q 006240          426 ELYTAVP--SRPFFPRG-----FLWDEGFHQLLIWRWD-VRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVL  497 (655)
Q Consensus       426 ~LfTaVP--SR~fFPRG-----FlWDEGFH~l~i~~WD-~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~v  497 (655)
                      +++|.+|  ++.+.|.|     |+||+.||.+.+..+| +++++++|.+|+.+|+++|+||+++              .+
T Consensus       105 ~~~sli~~p~~~vvPGg~F~~~~~WDs~f~~~gLl~~~~~~~A~~~l~~~~~~~~~~G~IPng~--------------r~  170 (535)
T 2jg0_A          105 KWDSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGN--------------RS  170 (535)
T ss_dssp             TTCSBCCCSSCEECCBTTBCSCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSSCCSBS--------------BG
T ss_pred             CccccccCCCCcccCCccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCcccCCC--------------Cc
Confidence            4666544  77777766     9999999999999995 6999999999999999999999962              35


Q ss_pred             cCCCCCCCcchHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhcC----------------C-----
Q 006240          498 QHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQS----------------G-----  556 (655)
Q Consensus       498 Q~p~~aNPPTl~l~l~~ll~~~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~TQ~----------------G-----  556 (655)
                      ++.+..|||++++++..+.+.-            ..+||+++||+|+++|+||.+.+.                |     
T Consensus       171 yY~~~sqPPl~~~~v~~~~~~~------------~~~fL~~~~p~L~~~~~ww~~~~~~~~~g~~~~~~~~~~~G~~l~~  238 (535)
T 2jg0_A          171 YYLSRSQPPFFALMVELLAQHE------------GDAALKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDGTLLNR  238 (535)
T ss_dssp             GGTTCCCSCCHHHHHHHHHHHH------------THHHHHHHHHHHHHHHHHHTTTCTTCCTTEEETTEEECTTSCEEEC
T ss_pred             cCCCCCCccHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHHHHhCCcccCccccccceeecCCCCccee
Confidence            6788899999999998887641            248999999999999999977653                1     


Q ss_pred             -------CCCCcceeeeCCCCcccccCC-----------CCCCCCCCCCCCCCC--------CCCccccchHHHHHHHHH
Q 006240          557 -------KEMSSYFWHGRDTTTIRELNP-----------KTLSSGLDDYPRASH--------PSEEERHLDLRCWMLLAV  610 (655)
Q Consensus       557 -------~~~~~YrWrGR~~~~~~elNp-----------~tL~SGLDDYPRa~~--------p~~~E~HvDL~sWm~~~a  610 (655)
                             +.+++||+...+.   .++++           +...||+||+||...        +.....+|||+|||+.+.
T Consensus       239 y~~~~~~prpesyr~d~~~~---~~~~~~~~~~~y~~~~~~~eSGwD~s~R~~~~~~~l~~~~t~~i~~VDlnA~ly~a~  315 (535)
T 2jg0_A          239 YWDDRDTPRPESWVEDIATA---KSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVPVDLNSLMFKME  315 (535)
T ss_dssp             CCCSCCSCCGGGHHHHHHHH---HTCTTSCHHHHHHHHHHHHHTTCCSCGGGBSSTTCGGGBCGGGEECHHHHHHHHHHH
T ss_pred             eccCCCCCCCcceeehhhhh---hccccchhHHHHHHHHHHHhCCCCCccccCCCCCcccccCCccchhhHHHHHHHHHH
Confidence                   0112343332211   11221           245799999999542        122347899999999999


Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHhccChhhHhhhcccccCCC
Q 006240          611 DSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTEL  654 (655)
Q Consensus       611 ~~m~~iA~~lg~~~d~~~~y~~~~~~l~d~~~ln~~hws~~~~~  654 (655)
                      +.|++||+.||+++++ ++|.+.++.++  +.+|+.+|+++++.
T Consensus       316 ~~la~lA~~lG~~~~a-~~~~~~A~~lk--~ai~~~fWdee~G~  356 (535)
T 2jg0_A          316 KILARASKAAGDNAMA-NQYETLANARQ--KGIEKYLWNDQQGW  356 (535)
T ss_dssp             HHHHHHHHHHTCHHHH-HHHHHHHHHHH--HHHHHHSEETTTTE
T ss_pred             HHHHHHHHHhCChHHH-HHHHHHHHHHH--HHHHHhCcCCCCCE
Confidence            9999999999998765 79999999999  99999999998763

PyMOL of 2jg0

>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}	Back alignment and structure

>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}	Back alignment and structure

>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*	Back alignment and structure

>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}	Back alignment and structure

>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		655
d2jg0a1		511	a.102.1.9 (A:37-547) Periplasmic trehalase TreA {E	2e-12

>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]} Length = 511	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Trehalase-like
domain: Periplasmic trehalase TreA
species: Escherichia coli [TaxId: 562]

 Score = 67.8 bits (165), Expect = 2e-12
 Identities = 32/244 (13%), Positives = 68/244 (27%), Gaps = 38/244 (15%)

Query: 420 LLYWPAELYTAVPSRPFFPRGFLWDEGFHQL-LIWRWDVRICLDILGHWLDLMNTDGWIP 478
           LL  P      VP    F   + WD  F  L L          D++ ++   ++T G IP
Sbjct: 103 LLPLPEPY--VVPGG-RFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIP 159

Query: 479 REQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLER 538
                               + +   PP   L++  L                  + L++
Sbjct: 160 NGNR--------------SYYLSRSQPPFFALMVELLAQHEGD------------AALKQ 193

Query: 539 ALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTIRELNP-------KTLSSGLDDYPRAS 591
            L +++  + ++       +                LN            S ++D   A 
Sbjct: 194 YLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAK 253

Query: 592 HPSEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILH 651
                    ++   +  A  S    +  +  + +      +T+ +  D   L+  +  + 
Sbjct: 254 SNPNRPAT-EIYRDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVPVDLNSLMFKMEKIL 312

Query: 652 TELI 655
               
Sbjct: 313 ARAS 316

PyMOL of d2jg0a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		655
d2jg0a1		511	Periplasmic trehalase TreA {Escherichia coli [TaxI	99.85
d1v7wa1		531	Chitobiose phosphorylase ChbP {Vibrio proteolyticu	97.42

>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Trehalase-like
domain: Periplasmic trehalase TreA
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=4.9e-22  Score=216.79  Aligned_cols=203  Identities=16%  Similarity=0.163  Sum_probs=154.4

Q ss_pred             cccCCccccccCCCCCCCCCCCcchhhHhhhHHHh-hhhHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCcccccc
Q 006240          420 LLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWR-WDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQ  498 (655)
Q Consensus       420 ~~~~p~~LfTaVPSR~fFPRGFlWDEGFH~l~i~~-WD~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ  498 (655)
                      ..+-|.+-.  ||.. .|+..|+||++||.+.+.. ...+++++||.+|+++|+.+||||++              .+++
T Consensus       103 li~~p~p~i--VPGg-rF~e~yyWDSyfi~lGLl~~~~~~~a~~ml~nf~~~i~~~G~IPng--------------~r~y  165 (511)
T d2jg0a1         103 LLPLPEPYV--VPGG-RFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNG--------------NRSY  165 (511)
T ss_dssp             BCCCSSCEE--CCBT-TBCSCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSSCCSB--------------SBGG
T ss_pred             eeeCCCCee--CCCC-CcCcccchHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhCCcCCCC--------------CCCC
Confidence            344566643  9997 6999999999999995555 55999999999999999999999985              5678


Q ss_pred             CCCCCCCcchHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-------------------
Q 006240          499 HPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQSGKEM-------------------  559 (655)
Q Consensus       499 ~p~~aNPPTl~l~l~~ll~~~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~TQ~G~~~-------------------  559 (655)
                      ++...+||.|++++..+++.-            ..+||++++|+|.++|+||.+...+...                   
T Consensus       166 y~~rSQPPlla~mv~~~~~~t------------~D~~L~~~lp~L~~e~~~W~~~~~~~~~~~~~~~~~~~~~g~~l~ry  233 (511)
T d2jg0a1         166 YLSRSQPPFFALMVELLAQHE------------GDAALKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDGTLLNRY  233 (511)
T ss_dssp             GTTCCCSCCHHHHHHHHHHHH------------THHHHHHHHHHHHHHHHHHTTTCTTCCTTEEETTEEECTTSCEEECC
T ss_pred             CCCCCccHHHHHHHHHHHHHh------------ChHHHHHHHHHHHHHHHHHHhcCCcccCCCceeeeecCCCCcccccc
Confidence            888999999999999888751            1268999999999999998654332211                   


Q ss_pred             ---------CcceeeeCCCCcccc-----cC---CCCCCCCCCCCCCCCC--CCC------ccccchHHHHHHHHHHHHH
Q 006240          560 ---------SSYFWHGRDTTTIRE-----LN---PKTLSSGLDDYPRASH--PSE------EERHLDLRCWMLLAVDSLH  614 (655)
Q Consensus       560 ---------~~YrWrGR~~~~~~e-----lN---p~tL~SGLDDYPRa~~--p~~------~E~HvDL~sWm~~~a~~m~  614 (655)
                               ++||+...+.....+     +.   ..+..||+|+++|...  ...      ....|||+|||+.++++|+
T Consensus       234 ~~~~~~prpEsyr~D~~~a~~~~~~~~~~~y~~l~s~~ESGwD~S~Rw~~~~~~l~~~~t~~i~pVDLNsll~~~~~~La  313 (511)
T d2jg0a1         234 WDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVPVDLNSLMFKMEKILA  313 (511)
T ss_dssp             CCSCCSCCGGGHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCCSCGGGBSSTTCGGGBCGGGEECHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCchhhhhhhhhhhcccchhHHHHHHHHHHHHhccCCccccccCChhhhccccccccccccHHHHHHHHHHHHH
Confidence                     222222111000000     00   0134599999999642  222      2355999999999999999


Q ss_pred             HHHHHhCCCchHHHHHHHHHHhccChhhHhhhcccccCCC
Q 006240          615 SIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTEL  654 (655)
Q Consensus       615 ~iA~~lg~~~d~~~~y~~~~~~l~d~~~ln~~hws~~~~~  654 (655)
                      .||+.+|.++++ .+|...++.++  +.|++++|+++.+.
T Consensus       314 ~la~~lg~~~~a-~~~~~~a~~~~--~ai~~~lWd~e~g~  350 (511)
T d2jg0a1         314 RASKAAGDNAMA-NQYETLANARQ--KGIEKYLWNDQQGW  350 (511)
T ss_dssp             HHHHHHTCHHHH-HHHHHHHHHHH--HHHHHHSEETTTTE
T ss_pred             HHHHHhcchHhH-HHHHHHHHHHH--HHHHHHhccCccCe
Confidence            999999998876 79999999999  99999999998763

PyMOL of d2jg0a1

>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}	Back information, alignment and structure