Citrus Sinensis ID: 006275
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 652 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LV93 | 692 | ABC transporter F family | yes | no | 0.943 | 0.888 | 0.794 | 0.0 | |
| Q9FIB4 | 678 | ABC transporter F family | no | no | 0.930 | 0.895 | 0.776 | 0.0 | |
| O05519 | 642 | Uncharacterized ABC trans | yes | no | 0.796 | 0.808 | 0.383 | 4e-98 | |
| P0A9U3 | 530 | Uncharacterized ABC trans | N/A | no | 0.783 | 0.964 | 0.333 | 7e-78 | |
| P0A9U4 | 530 | Uncharacterized ABC trans | yes | no | 0.783 | 0.964 | 0.333 | 7e-78 | |
| P0A9U5 | 530 | Uncharacterized ABC trans | N/A | no | 0.783 | 0.964 | 0.333 | 7e-78 | |
| O34512 | 518 | Uncharacterized ABC trans | no | no | 0.768 | 0.967 | 0.339 | 1e-74 | |
| P0A9W5 | 555 | Uncharacterized ABC trans | no | no | 0.753 | 0.884 | 0.329 | 2e-70 | |
| P0A9W3 | 555 | Uncharacterized ABC trans | N/A | no | 0.753 | 0.884 | 0.329 | 2e-70 | |
| P0A9W4 | 555 | Uncharacterized ABC trans | N/A | no | 0.753 | 0.884 | 0.329 | 2e-70 |
| >sp|Q9LV93|AB5F_ARATH ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/619 (79%), Positives = 550/619 (88%), Gaps = 4/619 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQIV
Sbjct: 548 EKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIV 607
Query: 608 NRVVEVKGSNLQDYAGDYN 626
NRV+EV+ L+DYAGDYN
Sbjct: 608 NRVIEVEDGCLEDYAGDYN 626
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB4|AB2F_ARATH ABC transporter F family member 2 OS=Arabidopsis thaliana GN=ABCF2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/631 (77%), Positives = 543/631 (86%), Gaps = 24/631 (3%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQR---PRITCQVSAATVE 55
M +TT + NLRS+FF T FT L+ R P I VSAA+
Sbjct: 1 MVLTTNLYSLNLRSTFFFT-----NTITCPTLFTFKLSSVSNPRRVFPNIRAHVSAAS-- 53
Query: 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKD 115
+ S++ESL S+ ++K +KQSN GASSISSGV+LENISKSY+G+TVLKD
Sbjct: 54 ------SNSELESLLST------DRKLISKQSNNGASSISSGVRLENISKSYEGITVLKD 101
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175
VTWEVKKGEKVGL+GVNGAGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM
Sbjct: 102 VTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMG 161
Query: 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235
+TV+EEFM FKEEMEIA KLE +QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++
Sbjct: 162 KTVKEEFMCTFKEEMEIARKLENLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSI 221
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
AK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKILLQ+PDLLLLDEPTNHLDLDTI
Sbjct: 222 HAKISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTI 281
Query: 296 EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQ 355
EWLEGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT++GNYSQYV+ KA +E+Q
Sbjct: 282 EWLEGYLIKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFDGNYSQYVISKAELVEAQ 341
Query: 356 YAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415
YAAWEKQQ+EIE TKDLI+RL AGANSGRASSAEKKLE+LQEEE IEKPFQRKQMKIRFP
Sbjct: 342 YAAWEKQQKEIEATKDLISRLSAGANSGRASSAEKKLEKLQEEELIEKPFQRKQMKIRFP 401
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G SGRSVVT+KNL FG++D++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEK
Sbjct: 402 ECGLSGRSVVTVKNLVFGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEK 461
Query: 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
P GEV+LGEHNVLPNYFEQNQAEA DLDKTV+ETV EAA DWRIDDIK LLGRCNFKAD
Sbjct: 462 PMRGEVILGEHNVLPNYFEQNQAEAQDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKAD 521
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVIT 595
MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI+EYKGTVIT
Sbjct: 522 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTVIT 581
Query: 596 VSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
VSHDRYF+KQIVNRV+EV+ L DYAGDYN
Sbjct: 582 VSHDRYFIKQIVNRVIEVRDGGLMDYAGDYN 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O05519|YDIF_BACSU Uncharacterized ABC transporter ATP-binding protein YdiF OS=Bacillus subtilis (strain 168) GN=ydiF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 359 bits (922), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 205/534 (38%), Positives = 317/534 (59%), Gaps = 15/534 (2%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SKS+ T+L ++ EV+ +++ +VG NGAGK+T L+IIAGQ + G +IK
Sbjct: 4 LQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES--AVDDMDLMGR 215
K ++ + +L+Q + T++EE ++ F +E+ +A+E A D +
Sbjct: 64 K-DITMGYLAQHTGLDSKLTIKEELLTVFDH----LKAMEKEMRAMEEKMAAADPGELES 118
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
++ +D LQ++ + +A V ++ LGF+ D V S S G + R++LGK+LL
Sbjct: 119 IMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLL 178
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
PDLL+LDEPTNHLD+DT+ WLE YL ++I+SHDR FLD++ ++ E S+
Sbjct: 179 TQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESK 238
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR-LGAGANSGRASSAEKKLER 394
Y GNYS Y+ +KAA E +EKQQ EI + +D ++R L + + RA S K+LER
Sbjct: 239 KYHGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLER 298
Query: 395 LQEEEQIEKPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEK 452
+ + + KP K F +SG V+ +++L YE++ L + + RGE
Sbjct: 299 M---DVMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGES 355
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
A++GPNG GKSTLLK ++ KP G + G NV Y++Q QAE L K VL+ +
Sbjct: 356 AALVGPNGIGKSTLLKTLIDTLKPDQGTISYGS-NVSVGYYDQEQAE-LTSSKRVLDELW 413
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
+ +I+ LG F D + + V LSGGEKARLA K M++ + L+LDEPTN
Sbjct: 414 DEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTN 473
Query: 573 HLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
HLD+ SKE+LE A+ +Y GT++ VSHDRYF+ +I RV+E+ S++++Y GDY+
Sbjct: 474 HLDLDSKEVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSHIEEYLGDYD 527
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P0A9U3|YBIT_ECOLI Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli (strain K12) GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 176/528 (33%), Positives = 298/528 (56%), Gaps = 17/528 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
DD ++ +LGR F D + + +LSGGEK R+ F K M++ +L++DEPTNHLD+
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
S E L A+ Y+GT+I VSHDR FV + R++E+ + D++G+Y
Sbjct: 473 SIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNY 520
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|P0A9U4|YBIT_ECOL6 Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 176/528 (33%), Positives = 298/528 (56%), Gaps = 17/528 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
DD ++ +LGR F D + + +LSGGEK R+ F K M++ +L++DEPTNHLD+
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
S E L A+ Y+GT+I VSHDR FV + R++E+ + D++G+Y
Sbjct: 473 SIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNY 520
|
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) |
| >sp|P0A9U5|YBIT_ECO57 Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O157:H7 GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 176/528 (33%), Positives = 298/528 (56%), Gaps = 17/528 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
DD ++ +LGR F D + + +LSGGEK R+ F K M++ +L++DEPTNHLD+
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
S E L A+ Y+GT+I VSHDR FV + R++E+ + D++G+Y
Sbjct: 473 SIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNY 520
|
Escherichia coli O157:H7 (taxid: 83334) |
| >sp|O34512|YFMM_BACSU Uncharacterized ABC transporter ATP-binding protein YfmM OS=Bacillus subtilis (strain 168) GN=yfmM PE=3 SV=2 | Back alignment and function description |
|---|
Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 174/512 (33%), Positives = 285/512 (55%), Gaps = 11/512 (2%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
S + ++++S + + +V++ + KGE VGL+G NG GK+T + II G+ EPD G V
Sbjct: 2 SILSVKDLSHGFGDRAIFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKVE 61
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+K N+++ +L Q + +++R+ AF + ++ + + A D D + +
Sbjct: 62 WSK-NVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMNEIYNKMGEA--DPDELEK 118
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
LL+E ++Q + +D+KV ++ LG + +R V S G + ++ L K+LL
Sbjct: 119 LLEEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDVTDLSGGQRTKVLLAKLLL 178
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
+ P++LLLDEPTN+LD IEWL+ YL + + ++ISHD FL+ + I E
Sbjct: 179 EKPEILLLDEPTNYLDEQHIEWLKRYLQEYENAFILISHDIPFLNSVINLIYHVENQELT 238
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS-GRASSAEKKLER 394
Y G+Y Q++ + AA++KQQ+E+ + KD + R A ++ A S +KKL++
Sbjct: 239 RYVGDYHQFMEVYEVKKQQLEAAYKKQQQEVAELKDFVARNKARVSTRNMAMSRQKKLDK 298
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
+ + IE ++ + + F SG+ + K+L GY D L NL +ERG+K A
Sbjct: 299 M---DMIELAAEKPKPEFHFKPARTSGKLIFETKDLVIGY-DSPLSRPLNLRMERGQKIA 354
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
+ G NG GK+TLLK ++G +P G V GEH + YFEQ E + T +E V
Sbjct: 355 LYGANGIGKTTLLKSLLGEIQPLEGSVERGEH-IYTGYFEQEVKET--NNNTCIEEVWSE 411
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+ +I+ L +C ++ +VS+LSGGEKA++ CK + + LLVLDEPTNHL
Sbjct: 412 FPSYTQYEIRAALAKCGLTTKHIESRVSVLSGGEKAKVRLCKLINSETNLLVLDEPTNHL 471
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQI 606
D +KE L+ A+ EYKG+++ +SH+ F I
Sbjct: 472 DADAKEELKRALKEYKGSILLISHEPDFYMDI 503
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P0A9W5|YJJK_SHIFL Uncharacterized ABC transporter ATP-binding protein YjjK OS=Shigella flexneri GN=yjjK PE=3 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 167/507 (32%), Positives = 275/507 (54%), Gaps = 16/507 (3%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LK+++ G K+G++G+NGAGK+T LRI+AG ++ G + + ++KI +L QE +
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEA-RPQPDIKIGYLPQEPQ 79
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
++ TVRE A E + +L+ V D D +L E L+ QA +
Sbjct: 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFD---KLAAEQGRLEEIIQAHD 136
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L+ ++ + L D D +A+ S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 137 GHNLNVQLERAADALRLP--DWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 194
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
+++ WLE +L + +V I+HDR FLD + I+E + G +EGNYS ++ +K
Sbjct: 195 AESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQR 254
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+ + + +++ IE+ + + + GR S + +L R +E E + + +
Sbjct: 255 LAQEASQEAARRKSIEKELEWVRQ----GTKGRQSKGKARLARFEELNSTEYQKRNETNE 310
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
+ P R G V+ + NL Y DRLL + + +I +G IIGPNG GKSTL ++I
Sbjct: 311 LFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMIS 370
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLL 527
G E+P G + LGE L + +++D KTV E V+ + +I + + +
Sbjct: 371 GQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYV 428
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
GR NFK ++V LSGGE+ RL K + +L+LDEPTN LDI + LE A+
Sbjct: 429 GRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALL 488
Query: 588 EYKGTVITVSHDRYFVKQIVNRVVEVK 614
E+ G + +SHDR+F+ +I +++ +
Sbjct: 489 EFPGCAMVISHDRWFLDRIATHILDYQ 515
|
Shigella flexneri (taxid: 623) |
| >sp|P0A9W3|YJJK_ECOLI Uncharacterized ABC transporter ATP-binding protein YjjK OS=Escherichia coli (strain K12) GN=yjjK PE=1 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 167/507 (32%), Positives = 275/507 (54%), Gaps = 16/507 (3%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LK+++ G K+G++G+NGAGK+T LRI+AG ++ G + + ++KI +L QE +
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEA-RPQPDIKIGYLPQEPQ 79
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
++ TVRE A E + +L+ V D D +L E L+ QA +
Sbjct: 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFD---KLAAEQGRLEEIIQAHD 136
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L+ ++ + L D D +A+ S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 137 GHNLNVQLERAADALRLP--DWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 194
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
+++ WLE +L + +V I+HDR FLD + I+E + G +EGNYS ++ +K
Sbjct: 195 AESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQR 254
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+ + + +++ IE+ + + + GR S + +L R +E E + + +
Sbjct: 255 LAQEASQEAARRKSIEKELEWVRQ----GTKGRQSKGKARLARFEELNSTEYQKRNETNE 310
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
+ P R G V+ + NL Y DRLL + + +I +G IIGPNG GKSTL ++I
Sbjct: 311 LFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMIS 370
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLL 527
G E+P G + LGE L + +++D KTV E V+ + +I + + +
Sbjct: 371 GQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYV 428
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
GR NFK ++V LSGGE+ RL K + +L+LDEPTN LDI + LE A+
Sbjct: 429 GRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALL 488
Query: 588 EYKGTVITVSHDRYFVKQIVNRVVEVK 614
E+ G + +SHDR+F+ +I +++ +
Sbjct: 489 EFPGCAMVISHDRWFLDRIATHILDYQ 515
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|P0A9W4|YJJK_ECO57 Uncharacterized ABC transporter ATP-binding protein YjjK OS=Escherichia coli O157:H7 GN=yjjK PE=3 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 167/507 (32%), Positives = 275/507 (54%), Gaps = 16/507 (3%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LK+++ G K+G++G+NGAGK+T LRI+AG ++ G + + ++KI +L QE +
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEA-RPQPDIKIGYLPQEPQ 79
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
++ TVRE A E + +L+ V D D +L E L+ QA +
Sbjct: 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFD---KLAAEQGRLEEIIQAHD 136
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L+ ++ + L D D +A+ S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 137 GHNLNVQLERAADALRLP--DWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 194
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
+++ WLE +L + +V I+HDR FLD + I+E + G +EGNYS ++ +K
Sbjct: 195 AESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQR 254
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+ + + +++ IE+ + + + GR S + +L R +E E + + +
Sbjct: 255 LAQEASQEAARRKSIEKELEWVRQ----GTKGRQSKGKARLARFEELNSTEYQKRNETNE 310
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
+ P R G V+ + NL Y DRLL + + +I +G IIGPNG GKSTL ++I
Sbjct: 311 LFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMIS 370
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLL 527
G E+P G + LGE L + +++D KTV E V+ + +I + + +
Sbjct: 371 GQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYV 428
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
GR NFK ++V LSGGE+ RL K + +L+LDEPTN LDI + LE A+
Sbjct: 429 GRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALL 488
Query: 588 EYKGTVITVSHDRYFVKQIVNRVVEVK 614
E+ G + +SHDR+F+ +I +++ +
Sbjct: 489 EFPGCAMVISHDRWFLDRIATHILDYQ 515
|
Escherichia coli O157:H7 (taxid: 83334) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 652 | ||||||
| 255576683 | 640 | abc transporter, putative [Ricinus commu | 0.957 | 0.975 | 0.810 | 0.0 | |
| 224081252 | 722 | ABC transporter family protein [Populus | 0.911 | 0.822 | 0.835 | 0.0 | |
| 224093878 | 635 | ABC transporter family protein [Populus | 0.779 | 0.8 | 0.862 | 0.0 | |
| 297797507 | 694 | ATGCN5 [Arabidopsis lyrata subsp. lyrata | 0.946 | 0.889 | 0.802 | 0.0 | |
| 449448414 | 714 | PREDICTED: ABC transporter F family memb | 0.957 | 0.873 | 0.780 | 0.0 | |
| 225438549 | 718 | PREDICTED: ABC transporter F family memb | 0.960 | 0.871 | 0.779 | 0.0 | |
| 15912315 | 692 | AT5g64840/MXK3_6 [Arabidopsis thaliana] | 0.943 | 0.888 | 0.794 | 0.0 | |
| 15238261 | 692 | ABC transporter F family member 5 [Arabi | 0.943 | 0.888 | 0.794 | 0.0 | |
| 356509032 | 696 | PREDICTED: ABC transporter F family memb | 0.929 | 0.870 | 0.791 | 0.0 | |
| 297811095 | 678 | hypothetical protein ARALYDRAFT_487818 [ | 0.930 | 0.895 | 0.782 | 0.0 |
| >gi|255576683|ref|XP_002529230.1| abc transporter, putative [Ricinus communis] gi|223531303|gb|EEF33143.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/638 (81%), Positives = 567/638 (88%), Gaps = 14/638 (2%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFTN-----SLNFTKKQRP--RITCQVSA 51
MD++T +L SS F T P PF S S+ F RP RIT ++S
Sbjct: 1 MDLSTKFHRLDLHSSSFLTGSPLRPPFKQNSSLPIITKPISVKFPS-TRPTSRITARLST 59
Query: 52 ATVEKKSIAKAQSD---VESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK 108
ATVE S+A A +D +ESLFSSS+ +K+ S KQSNTGAS I+SG+KLENISKSYK
Sbjct: 60 ATVET-SVADADTDTTDIESLFSSSSGNDFDKRASRKQSNTGASGITSGIKLENISKSYK 118
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII GQEE DSGNVIKAK NMK+AFLSQ
Sbjct: 119 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIITGQEEADSGNVIKAKPNMKVAFLSQ 178
Query: 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228
EFEVS+SRTV+EEFMSAF+EEMEIAG+LE+VQKA+E++V+D++LMGRLLDEFDLLQR+AQ
Sbjct: 179 EFEVSLSRTVKEEFMSAFEEEMEIAGRLEKVQKAIENSVEDLELMGRLLDEFDLLQRRAQ 238
Query: 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
AV+LD +DAK+SKLMPELGF +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTN
Sbjct: 239 AVDLDEVDAKISKLMPELGFAPEDSDRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTN 298
Query: 289 HLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348
HLDLDTIEWLEGYL KQ+VPMVIISHDRAFLDQLCTKIVETEMGV+RTY+GNYSQY++ K
Sbjct: 299 HLDLDTIEWLEGYLQKQEVPMVIISHDRAFLDQLCTKIVETEMGVARTYDGNYSQYLVSK 358
Query: 349 AAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRK 408
AAWIESQYAAWEKQQ+EIEQTKDLI+RLGAGANSGRASSAEKKLERLQEE+QIEKPFQRK
Sbjct: 359 AAWIESQYAAWEKQQKEIEQTKDLISRLGAGANSGRASSAEKKLERLQEEDQIEKPFQRK 418
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
QMKIRFPERGRSGR+VV IKNLEF YED++LFN+ NLTIERGEK AIIGPNGCGKSTLLK
Sbjct: 419 QMKIRFPERGRSGRNVVMIKNLEFSYEDQVLFNKTNLTIERGEKIAIIGPNGCGKSTLLK 478
Query: 469 LIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528
LIMGLEKP GE++LGEHNVLPNYFEQNQAEALDLDKTVL+TV E AEDWRIDDIKGLLG
Sbjct: 479 LIMGLEKPNAGEIVLGEHNVLPNYFEQNQAEALDLDKTVLQTVEEVAEDWRIDDIKGLLG 538
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI SKEMLEEAI+E
Sbjct: 539 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDITSKEMLEEAITE 598
Query: 589 YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
Y GT+ITVSHDRYF+KQIVNRV+EVK LQDYAGDYN
Sbjct: 599 YTGTIITVSHDRYFIKQIVNRVIEVKDGKLQDYAGDYN 636
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081252|ref|XP_002306353.1| ABC transporter family protein [Populus trichocarpa] gi|222855802|gb|EEE93349.1| ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/596 (83%), Positives = 550/596 (92%), Gaps = 2/596 (0%)
Query: 32 TNSLNF-TKKQRPRITCQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTG 90
TNS NF T++ +I ++S ATVE S+A+ ++D ESLFSS++D +K KQSN G
Sbjct: 43 TNSFNFPTRRPNSKIKARLSTATVET-SVAEPETDTESLFSSNSDVDFDKNRLRKQSNRG 101
Query: 91 ASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD 150
AS ISSG+KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI+ G EEPD
Sbjct: 102 ASGISSGIKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIMTGLEEPD 161
Query: 151 SGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
SGNVIKAK+NMKIAFLSQEFEVSMSRTV+EEFMSAFKEEMEIA +LE+VQKA+E +V+D+
Sbjct: 162 SGNVIKAKANMKIAFLSQEFEVSMSRTVKEEFMSAFKEEMEIAKRLEKVQKAIEGSVEDL 221
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
+LMGRLLDEFDLLQR+AQAV+LD +DAK+SKLMP+LGF+ +D DRLVA+FSSGWQMRMSL
Sbjct: 222 ELMGRLLDEFDLLQRRAQAVDLDEVDAKISKLMPQLGFSPEDSDRLVAAFSSGWQMRMSL 281
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330
GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+
Sbjct: 282 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDVPMVIISHDRAFLDQLCTKIVETD 341
Query: 331 MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390
MGVSRT+EGNYSQY++ KA W+E+Q AAWEK QREIE T+DLI+RLG+GANSGRASSAEK
Sbjct: 342 MGVSRTFEGNYSQYIISKAEWVEAQLAAWEKHQREIEHTRDLISRLGSGANSGRASSAEK 401
Query: 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERG 450
KLERLQEE+QIEKPFQRKQMKIRFPERGRSGRSVV I+NLEFGYED++LFN+ NL IERG
Sbjct: 402 KLERLQEEDQIEKPFQRKQMKIRFPERGRSGRSVVAIRNLEFGYEDKVLFNKTNLMIERG 461
Query: 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLET 510
EK AI+GPNGCGKSTLLKLIMG+EKP GE++LGEHNVLPNYFEQNQAEALDLDKTVL+T
Sbjct: 462 EKIAILGPNGCGKSTLLKLIMGVEKPSRGEIVLGEHNVLPNYFEQNQAEALDLDKTVLQT 521
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
V E AEDWR+DDIKGLLGRCNFK DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP
Sbjct: 522 VEEVAEDWRLDDIKGLLGRCNFKVDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 581
Query: 571 TNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
TNHLDIPSKEMLEEAISEYKGTVITVSHDRYF+KQIVNRVVEVK LQDYAGDYN
Sbjct: 582 TNHLDIPSKEMLEEAISEYKGTVITVSHDRYFIKQIVNRVVEVKDGKLQDYAGDYN 637
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224093878|ref|XP_002310031.1| ABC transporter family protein [Populus trichocarpa] gi|222852934|gb|EEE90481.1| ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/569 (86%), Positives = 536/569 (94%)
Query: 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVT 117
S A +++D+ESLFSS++D ++K SNKQSN GAS ISSG+KLENISKSYKGVTVLKDVT
Sbjct: 1 SGADSKTDIESLFSSNSDVEFDRKRSNKQSNGGASGISSGIKLENISKSYKGVTVLKDVT 60
Query: 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177
WEVKKGEKVGLVGVNGAGKTTQLRII GQEEPDSGNVIKAK+NMKIAFLSQEFEVSMSRT
Sbjct: 61 WEVKKGEKVGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKANMKIAFLSQEFEVSMSRT 120
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
V+EEFMSAFKEEMEIA +LE+VQKA+E AV+D+DLMGRLLDEFDLLQR+AQAV+LD +DA
Sbjct: 121 VKEEFMSAFKEEMEIAERLEKVQKAIEGAVEDLDLMGRLLDEFDLLQRRAQAVDLDEVDA 180
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW 297
K+SKLMPELGF+ +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW
Sbjct: 181 KISKLMPELGFSPEDSDRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW 240
Query: 298 LEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYA 357
LEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQY++ KA W+E+Q A
Sbjct: 241 LEGYLQKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYIISKAEWVEAQLA 300
Query: 358 AWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPER 417
AWEKQQ+EIE T++LI+RLGAGANSGRASSAEKKLERLQEE+QIEKPFQ KQMKIRFPER
Sbjct: 301 AWEKQQKEIEHTRELISRLGAGANSGRASSAEKKLERLQEEDQIEKPFQHKQMKIRFPER 360
Query: 418 GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
GRSGRSVV I NLEFG+ED++LFN+ NL IERGEK AIIGPNGCGKSTLLKLIMGLEKP
Sbjct: 361 GRSGRSVVAINNLEFGFEDKVLFNKTNLMIERGEKIAIIGPNGCGKSTLLKLIMGLEKPT 420
Query: 478 GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
GG++++GEHNVLPNYFEQNQAEALDLDKTV++TV E AEDWR+DDIKGLLGRCNFKADML
Sbjct: 421 GGQIMVGEHNVLPNYFEQNQAEALDLDKTVIQTVEEVAEDWRLDDIKGLLGRCNFKADML 480
Query: 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVS 597
DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY GTVITVS
Sbjct: 481 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYSGTVITVS 540
Query: 598 HDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
HDRYF+KQIVNRVVEVK LQDYAGDYN
Sbjct: 541 HDRYFIKQIVNRVVEVKDDKLQDYAGDYN 569
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797507|ref|XP_002866638.1| ATGCN5 [Arabidopsis lyrata subsp. lyrata] gi|297312473|gb|EFH42897.1| ATGCN5 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/619 (80%), Positives = 550/619 (88%), Gaps = 2/619 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L+P +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGLRPCPSPIPSNFIKISSISNPRRGISTIRAQVSTISLET-SVKERQDEIES 69
Query: 69 LFSSSADEFENKKYSN-KQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS E ++ + N K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 70 LFSKPTSEQDSDRRRNGKNSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 129
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMKIAFLSQEFEVSMS+TVREEFMSAFK
Sbjct: 130 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKIAFLSQEFEVSMSKTVREEFMSAFK 189
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 190 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 249
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F ++D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 250 FASEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 309
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ+EI+
Sbjct: 310 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKEID 369
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 370 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 429
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL IERGEK AIIGPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 430 KNIDFGFEDKMLFKKANLAIERGEKIAIIGPNGCGKSTLLKLIMGLEKPMKGEVILGEHN 489
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 490 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 549
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQIV
Sbjct: 550 EKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIV 609
Query: 608 NRVVEVKGSNLQDYAGDYN 626
NRV+EV+ L+DYAGDYN
Sbjct: 610 NRVIEVEDGCLEDYAGDYN 628
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448414|ref|XP_004141961.1| PREDICTED: ABC transporter F family member 5-like [Cucumis sativus] gi|449519128|ref|XP_004166587.1| PREDICTED: ABC transporter F family member 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/648 (78%), Positives = 562/648 (86%), Gaps = 24/648 (3%)
Query: 1 MDVTTTTTNL--RSSFFS---TLQPRFTPFASAKSFTN-------------SLNFTKKQR 42
MD+T +L RSSF + L R T F S++ + S+ +
Sbjct: 1 MDLTIKLHHLHLRSSFLTGSPLLDSRKTLFGSSQHHLSNRTVSQSIGGNFKSIRASSLPN 60
Query: 43 PR-ITCQVSAATVEKKSIAKAQS--DVESLFSS-SADEFENKKYSNKQSNTGASSISSGV 98
PR + ++ A VE S+A+ + D+ESL SS S EF+ K+ KQSN G S ISSGV
Sbjct: 61 PRRVNSRIEAVAVEA-SVAETSTKEDIESLLSSGSVGEFDGKRVF-KQSNAGDSRISSGV 118
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
KLEN+SKSYKG TVLK+V+WEVKKGEKVGLVGVNGAGKTTQ+RIIAG EEPDSGNV+KAK
Sbjct: 119 KLENVSKSYKGATVLKNVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVMKAK 178
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+NMKIAFLSQEFEVS+SRTVREEF+SAFKEEMEIA +LE+VQKALESAV+D+ LMGRLLD
Sbjct: 179 ANMKIAFLSQEFEVSLSRTVREEFLSAFKEEMEIATRLEKVQKALESAVEDLQLMGRLLD 238
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
EFDLLQR+AQAV+LD +D KVSKL+PELGF+ +D DRLVASFS GWQMRMSLGKILLQ+P
Sbjct: 239 EFDLLQRRAQAVDLDEVDVKVSKLLPELGFSEEDSDRLVASFSGGWQMRMSLGKILLQEP 298
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
DLLLLDEPTNHLDLDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRTYE
Sbjct: 299 DLLLLDEPTNHLDLDTIEWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTYE 358
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
GNYSQYV+ KA WIE+Q AAWEKQQ+EIEQTKDLI+RLGAGANSGRASSAEKKLERLQE
Sbjct: 359 GNYSQYVMSKAEWIEAQNAAWEKQQKEIEQTKDLISRLGAGANSGRASSAEKKLERLQEA 418
Query: 399 EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGP 458
+ +EKPFQRKQMKIRFPERG+SGR+VV +KNLEFG+ED+ LFN+ANL IERGEK AI+GP
Sbjct: 419 DLVEKPFQRKQMKIRFPERGQSGRTVVAVKNLEFGFEDKQLFNKANLIIERGEKIAILGP 478
Query: 459 NGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518
NGCGKSTLLKLIMGLEKP+GGEVLLGEHNVLPNYFEQNQAEALDL+KTVLETV E AEDW
Sbjct: 479 NGCGKSTLLKLIMGLEKPKGGEVLLGEHNVLPNYFEQNQAEALDLEKTVLETVEEVAEDW 538
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
RIDDIKGLLGRCNFK +MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS
Sbjct: 539 RIDDIKGLLGRCNFKTEMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 598
Query: 579 KEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
KEMLEEAI+EY GTVITVSHDRYF+KQIVNRV+EVK NLQDYAGDYN
Sbjct: 599 KEMLEEAITEYSGTVITVSHDRYFIKQIVNRVIEVKEGNLQDYAGDYN 646
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438549|ref|XP_002279804.1| PREDICTED: ABC transporter F family member 5 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/652 (77%), Positives = 563/652 (86%), Gaps = 26/652 (3%)
Query: 1 MDVTTT--TTNLRSSFFST----------LQPRFTPF-------ASAKSFTNSLNFTK-- 39
MD+ T +LRSSFF+ L+P F P AS S T S + K
Sbjct: 1 MDLATKLQCIDLRSSFFTGSALLDARKTGLRPHFRPHTRSIPISASTHSITGSNSSIKTS 60
Query: 40 ---KQRPRITCQVSAATVEKKSIAKAQS--DVESLFSSSADEFENKKYSNKQSNTGASSI 94
R R + S A S+A+ S D+ESLFS+++ + +K NKQSN+GASSI
Sbjct: 61 ALFNSRTRSSMVSSKAVAMDTSVAETMSREDIESLFSNNSVDEAYQKRVNKQSNSGASSI 120
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
SSGV+LEN+SK YKGVTVLKDV+WEVKKGEKVGLVGVNGAGKTTQLRII G EEPDSGNV
Sbjct: 121 SSGVRLENVSKGYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQLRIITGLEEPDSGNV 180
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
IKAK NMKIAFLSQEFEVS+SRTV+EEFMSAFKEEMEIA +LE+VQKA+ES+VDD++LMG
Sbjct: 181 IKAKMNMKIAFLSQEFEVSLSRTVKEEFMSAFKEEMEIAARLEKVQKAIESSVDDLELMG 240
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
RLLDE DLLQR+AQAV+LD +DAK+SKLMPELGF +D DRLVASFSSGWQMRMSLGKIL
Sbjct: 241 RLLDENDLLQRRAQAVDLDEVDAKISKLMPELGFAPEDSDRLVASFSSGWQMRMSLGKIL 300
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334
LQ+PDLLLLDEPTNHLDLDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVS
Sbjct: 301 LQEPDLLLLDEPTNHLDLDTIEWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVS 360
Query: 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER 394
RTYEGNYSQYV+ KA WIE+QYAAWEKQQ+EIE T+DLI+RL GANSGRAS+AEKKLE+
Sbjct: 361 RTYEGNYSQYVIAKATWIEAQYAAWEKQQKEIEHTRDLISRLSGGANSGRASTAEKKLEK 420
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
LQ+EEQI+KPFQ KQMKIRFPERG SGRSV+ IKNLEFGY D++LF +ANLTIERGEK A
Sbjct: 421 LQDEEQIDKPFQHKQMKIRFPERGVSGRSVLAIKNLEFGYGDKVLFKKANLTIERGEKIA 480
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
IIGPNGCGKSTLLKLIMGLEKP GGEVLLGEHNVLPNYFEQNQAEALDLDKTVL+TV +
Sbjct: 481 IIGPNGCGKSTLLKLIMGLEKPIGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLQTVEDV 540
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
AE+W+IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL
Sbjct: 541 AENWKIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 600
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
DIP+KEMLEEAI+EYKGTV+TVSHDRYF+KQIVNRV+EVK NLQDYAGDYN
Sbjct: 601 DIPTKEMLEEAITEYKGTVVTVSHDRYFIKQIVNRVIEVKDGNLQDYAGDYN 652
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15912315|gb|AAL08291.1| AT5g64840/MXK3_6 [Arabidopsis thaliana] gi|23308219|gb|AAN18079.1| At5g64840/MXK3_6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/619 (79%), Positives = 550/619 (88%), Gaps = 4/619 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 68 LFSKQPSQQDSDRKQNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQIV
Sbjct: 548 EKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIV 607
Query: 608 NRVVEVKGSNLQDYAGDYN 626
NRV+EV+ L+DYAGDYN
Sbjct: 608 NRVIEVEDGCLEDYAGDYN 626
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238261|ref|NP_201289.1| ABC transporter F family member 5 [Arabidopsis thaliana] gi|75335535|sp|Q9LV93.1|AB5F_ARATH RecName: Full=ABC transporter F family member 5; Short=ABC transporter ABCF.5; Short=AtABCF5; AltName: Full=GCN20-type ATP-binding cassette protein GCN5 gi|8843748|dbj|BAA97296.1| ABC transporter protein 1-like [Arabidopsis thaliana] gi|110742654|dbj|BAE99239.1| ABC transporter protein 1-like [Arabidopsis thaliana] gi|332010577|gb|AED97960.1| ABC transporter F family member 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/619 (79%), Positives = 550/619 (88%), Gaps = 4/619 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQIV
Sbjct: 548 EKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIV 607
Query: 608 NRVVEVKGSNLQDYAGDYN 626
NRV+EV+ L+DYAGDYN
Sbjct: 608 NRVIEVEDGCLEDYAGDYN 626
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509032|ref|XP_003523256.1| PREDICTED: ABC transporter F family member 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/619 (79%), Positives = 545/619 (88%), Gaps = 13/619 (2%)
Query: 11 RSSFFSTLQPRFTPFASAKS---FTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVE 67
+ S L PR + + +TN F+ RP ++A+ S+ + D+E
Sbjct: 22 KPSALRHLPPRVLSRTNTNTNLIYTN--RFSGPPRP------NSASSTGLSMITVEDDIE 73
Query: 68 SLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
SLFS + E E + KQ + GAS ISSGVKLEN+ K+YKGVTVLKDV+WEVKKGEKVG
Sbjct: 74 SLFSETNSEEERR--VRKQPSIGASGISSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVG 131
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQ+RIIAG EEPD GNV+KAK+NMKIAFL+QEFEV+ SRTVREEFM+AFK
Sbjct: 132 LVGVNGAGKTTQMRIIAGLEEPDFGNVVKAKANMKIAFLNQEFEVAPSRTVREEFMNAFK 191
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEME+AGKLE+VQKALE AV+D++LMGRLLDEFDLLQR+AQ VNLD +DAK+SKLMPELG
Sbjct: 192 EEMEVAGKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQNVNLDEVDAKISKLMPELG 251
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRM LGKILLQ+PDLLLLDEPTNHLDLDTIEWLE YL +QDV
Sbjct: 252 FAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNQQDV 311
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQYV+ KAAWIE+QYAAWEKQQ+EIE
Sbjct: 312 PMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIE 371
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
QT+DLI+RLGAGANSGRASSAEKKLERLQEEE +EKPF+RKQMKIRFPERGRSGRSVV I
Sbjct: 372 QTRDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVAI 431
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
NLEFG+ED+ LF +ANLTIERGEK AIIGPNGCGKSTLLKLIMGLEKP GGEVLLGEHN
Sbjct: 432 NNLEFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGEVLLGEHN 491
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAEALDL+KTVLETV EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 492 VLPNYFEQNQAEALDLEKTVLETVEEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 551
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMVKPST+LVLDEPTNHLDIPSKEMLEEAI+EY+GTVITVSHDRYF+KQIV
Sbjct: 552 EKARLAFCKFMVKPSTMLVLDEPTNHLDIPSKEMLEEAINEYQGTVITVSHDRYFIKQIV 611
Query: 608 NRVVEVKGSNLQDYAGDYN 626
NRV+E+K +QDYAGDY+
Sbjct: 612 NRVIEIKDGTIQDYAGDYD 630
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811095|ref|XP_002873431.1| hypothetical protein ARALYDRAFT_487818 [Arabidopsis lyrata subsp. lyrata] gi|297319268|gb|EFH49690.1| hypothetical protein ARALYDRAFT_487818 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/631 (78%), Positives = 552/631 (87%), Gaps = 24/631 (3%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFT---NSLNFTKKQRPRITCQVSAATVE 55
M +TT + NLRS+FF T P FT +S++ +++ P I Q SA +
Sbjct: 1 MGLTTNLHSLNLRSAFFFT-----NPLPCHTLFTFKLSSVSNPRREFPNIIAQASATS-- 53
Query: 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKD 115
+ S+++SLFS+ ++K KQSN GASSISSGV+LENISKSY+GVTVLKD
Sbjct: 54 ------SNSELDSLFST------DRKLIGKQSNNGASSISSGVRLENISKSYEGVTVLKD 101
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175
VTWEVKKGEKVGL+GVNGAGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM
Sbjct: 102 VTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMG 161
Query: 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235
+TV+EEFMSAFKEEME+A KLER+QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++
Sbjct: 162 KTVKEEFMSAFKEEMEVARKLERLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSI 221
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
DAK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKILLQ+PDLLLLDEPTNHLDLDTI
Sbjct: 222 DAKISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTI 281
Query: 296 EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQ 355
EWLEGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA W+E+Q
Sbjct: 282 EWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWVEAQ 341
Query: 356 YAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415
YA+WEKQQ+EIE TKDLI+RL GANSGRASSAEKKLE+LQEEEQIEKPFQRKQMKIRF
Sbjct: 342 YASWEKQQKEIEATKDLISRLSGGANSGRASSAEKKLEKLQEEEQIEKPFQRKQMKIRFL 401
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G SGRSVVT+KNL FG+ED++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEK
Sbjct: 402 ECGLSGRSVVTVKNLGFGFEDKILFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEK 461
Query: 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
P GEV+LGEHNVLPNYFEQNQAEALDLDKTV+ETV EAA DWRIDDIK LLGRCNFKAD
Sbjct: 462 PMRGEVILGEHNVLPNYFEQNQAEALDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKAD 521
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVIT 595
MLDR+VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI+EYKGTVIT
Sbjct: 522 MLDRRVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTVIT 581
Query: 596 VSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
VSHDRYF+KQIVNRV+EV+ L DYAGDYN
Sbjct: 582 VSHDRYFIKQIVNRVIEVRDGGLMDYAGDYN 612
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 652 | ||||||
| TAIR|locus:2177689 | 692 | ABCF5 "ATP-binding cassette F5 | 0.943 | 0.888 | 0.718 | 2.2e-231 | |
| TAIR|locus:2178168 | 678 | ABCF2 "ATP-binding cassette F2 | 0.935 | 0.899 | 0.702 | 4.6e-224 | |
| TIGR_CMR|GSU_0922 | 645 | GSU_0922 "ABC transporter, ATP | 0.796 | 0.804 | 0.348 | 6.2e-85 | |
| TIGR_CMR|DET_0224 | 663 | DET_0224 "ABC transporter, ATP | 0.817 | 0.803 | 0.314 | 1.5e-76 | |
| UNIPROTKB|Q81VE6 | 640 | BA_0262 "ABC transporter, ATP- | 0.803 | 0.818 | 0.332 | 5e-76 | |
| TIGR_CMR|BA_0262 | 640 | BA_0262 "ABC transporter, ATP- | 0.803 | 0.818 | 0.332 | 5e-76 | |
| TIGR_CMR|GSU_2093 | 545 | GSU_2093 "ABC transporter, ATP | 0.802 | 0.959 | 0.333 | 7.3e-75 | |
| TIGR_CMR|BA_0228 | 626 | BA_0228 "ABC transporter, ATP- | 0.796 | 0.829 | 0.318 | 2.4e-69 | |
| UNIPROTKB|P0A9U3 | 530 | ybiT "putative ATP-binding com | 0.739 | 0.909 | 0.304 | 1.3e-61 | |
| UNIPROTKB|Q9KRW4 | 530 | VC1520 "ABC transporter, ATP-b | 0.792 | 0.975 | 0.287 | 4.3e-61 |
| TAIR|locus:2177689 ABCF5 "ATP-binding cassette F5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2232 (790.8 bits), Expect = 2.2e-231, P = 2.2e-231
Identities = 445/619 (71%), Positives = 499/619 (80%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFEN-KKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXX 127
LFS + ++ +K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWE
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 XXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
AGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKI EPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RL PFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQIV
Sbjct: 548 EKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIV 607
Query: 608 NRVVEVKGSNLQDYAGDYN 626
NRV+EV+ L+DYAGDYN
Sbjct: 608 NRVIEVEDGCLEDYAGDYN 626
|
|
| TAIR|locus:2178168 ABCF2 "ATP-binding cassette F2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2163 (766.5 bits), Expect = 4.6e-224, P = 4.6e-224
Identities = 441/628 (70%), Positives = 496/628 (78%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKS 58
M +TT + NLRS+FF T + K +S++ ++ P I VSAA+
Sbjct: 1 MVLTTNLYSLNLRSTFFFTNTITCPTLFTFK--LSSVSNPRRVFPNIRAHVSAAS----- 53
Query: 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTW 118
+ S++ESL S+ ++K +KQSN GASSISSGV+LENISKSY+G+TVLKDVTW
Sbjct: 54 ---SNSELESLLST------DRKLISKQSNNGASSISSGVRLENISKSYEGITVLKDVTW 104
Query: 119 EXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
E AGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM +TV
Sbjct: 105 EVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMGKTV 164
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
+EEFM FKEEMEIA KLE +QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++ AK
Sbjct: 165 KEEFMCTFKEEMEIARKLENLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSIHAK 224
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWL 298
+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKI EPTNHLDLDTIEWL
Sbjct: 225 ISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTIEWL 284
Query: 299 EGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAA 358
EGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT++GNYSQYV+ KA +E+QYAA
Sbjct: 285 EGYLIKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFDGNYSQYVISKAELVEAQYAA 344
Query: 359 WEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERG 418
WEKQQ+EIE TKDLI+RL PFQRKQMKIRFPE G
Sbjct: 345 WEKQQKEIEATKDLISRLSAGANSGRASSAEKKLEKLQEEELIEKPFQRKQMKIRFPECG 404
Query: 419 RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SGRSVVT+KNL FG++D++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEKP
Sbjct: 405 LSGRSVVTVKNLVFGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEKPMR 464
Query: 479 GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
GEV+LGEHNVLPNYFEQNQAEA DLDKTV+ETV EAA DWRIDDIK LLGRCNFKADMLD
Sbjct: 465 GEVILGEHNVLPNYFEQNQAEAQDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKADMLD 524
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH 598
RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI+EYKGTVITVSH
Sbjct: 525 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTVITVSH 584
Query: 599 DRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
DRYF+KQIVNRV+EV+ L DYAGDYN
Sbjct: 585 DRYFIKQIVNRVIEVRDGGLMDYAGDYN 612
|
|
| TIGR_CMR|GSU_0922 GSU_0922 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 184/528 (34%), Positives = 294/528 (55%)
Query: 100 LENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L +SK + G ++ ++ W AGK+T +RI+AG E SG +I A+
Sbjct: 4 LRKLSKDFAGTSLFAEIDWHLKKGERVGLVGENGAGKSTLMRIVAGLVEQTSGELIFARG 63
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
+ +L Q+ V+ R + E M+A ++ + +L + LE+ D G L+
Sbjct: 64 -ATVGYLPQDGIVTRGRGLLAEAMTALEDLQSLERELHELTSRLENISHDAPEHGECLER 122
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXX 279
+ LQ + + +++A+ +++ LGFT D R FS GWQMR++L K+
Sbjct: 123 YGRLQEEFRLRGGYSMEAEACRVLDGLGFTTGDRQRDCGEFSGGWQMRIALAKLLLKKPN 182
Query: 280 XXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
EPTNHLD++ WLEGYL + ++++SHDR F+DQ+C +I E G Y
Sbjct: 183 VLLLDEPTNHLDIEARNWLEGYLQEYPHSVILVSHDRFFMDQVCHRITEVWNGTLTDYHC 242
Query: 340 NYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXX 399
+YS+Y+ + + + A +Q E+ + +D INR
Sbjct: 243 SYSRYLTAREERVAALLEAKRRQDEEVAKIEDFINRFRYKADKAALVQSRVKQLEKIERI 302
Query: 400 XXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPN 459
P +RK+++ RFP+ +SGR V+ +K + Y ++ + +LT+E+GE+ A++G N
Sbjct: 303 VL--PPERKKIRFRFPDPPKSGRIVLELKGVTKAYGSHVVLDGIDLTVEKGERIALVGHN 360
Query: 460 GCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV-AEAAED 517
G GKSTL+ ++ G KP +GGE + G HNV+ +YF Q+QA+ LD KT E + A+A D
Sbjct: 361 GAGKSTLMGVLAG--KPFQGGERIAG-HNVVADYFAQDQAQVLDGAKTAHEELLADAPFD 417
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
+ ++ +LG F D + ++V +LSGGE+ RLA K +++PS LL++DEPTNHLD+
Sbjct: 418 M-VPQLRDILGAFLFTGDDIHKRVEVLSGGERNRLALAKMLLRPSNLLLMDEPTNHLDLF 476
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
SKE+L +A+ + GTV+ VSHDR+F+ + RVVEV+G L Y GDY
Sbjct: 477 SKEVLLDALKTFAGTVVFVSHDRHFIDGLATRVVEVEGGRLTSYHGDY 524
|
|
| TIGR_CMR|DET_0224 DET_0224 "ABC transporter, ATP-binding protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 170/540 (31%), Positives = 276/540 (51%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ ++N+SKS+ ++ V +GKTT +IAG+ E D G +I
Sbjct: 2 LNIQNLSKSFGVRSLYTGVNLNIGARDRLALLGPNGSGKTTLFEMIAGRLEADEGKIILR 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ + +L Q+ + S + + + SA ++ K+ +Q L D + RL+
Sbjct: 62 RGTT-VGYLEQDIKPSSKQPLLKAVSSASDRLSSLSHKISLLQGELAEEKDGSE-NNRLM 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
+E LQ +A+ + + ++ LGF D DR + FS GW MR L K+
Sbjct: 120 NELGELQHSFEALGGYNAEQEAKLILAGLGFKPVDFDRPLHEFSGGWLMRAELAKLLFLS 179
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
EPTNHLDL++ W E YL + ++ SHDRAFL+ + TKI+ E +R Y
Sbjct: 180 PDILILDEPTNHLDLESTRWFESYLKQYSGSVLFTSHDRAFLNSIATKILSLEDQKARLY 239
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXX 397
GNY Y+ E+ + + +QQ I++ I R
Sbjct: 240 SGNYDSYLRERELRLNQLESQARRQQELIDKETKFIERFRYKATKASQVQSRIKKLDKLS 299
Query: 398 XXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
P Q K++ FPE RSG V+ ++NL Y D +++ L + RG+K A++G
Sbjct: 300 AVAI--PRQTKKIHFNFPEPERSGHDVIKLRNLTKSYGDLVIYQGLELVLARGDKAALVG 357
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
PNG GK+TLLK++ G+ G LG NV YF Q E+L ++E + D
Sbjct: 358 PNGAGKTTLLKILAGVMPFDSGYRNLGA-NVNTAYFAQYYVESLSPANNLIEELETILPD 416
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
++G+LG F D + +++S+LSGGEK RLA K ++KP+ L+++DEPTNHLDIP
Sbjct: 417 APEQQLRGMLGAFLFSGDDVKKRISVLSGGEKTRLAIAKMLLKPANLVLMDEPTNHLDIP 476
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC--FTSFSPF 635
++E+L +A+ YKGT+ ++HDR ++++ N+++EV+ ++ + GDY+ F + +PF
Sbjct: 477 AREILADALQAYKGTLCFITHDRTLIREVANKIIEVRNGKIRVFEGDYDAYLEFAAANPF 536
|
|
| UNIPROTKB|Q81VE6 BA_0262 "ABC transporter, ATP-binding protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 177/532 (33%), Positives = 278/532 (52%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SK Y T+L ++ E AGK+T L+IIAG+ D G +IK
Sbjct: 4 LQVNALSKLYGAETILANIKLEVQTKDRIALVGRNGAGKSTLLKIIAGELSHDGGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
K ++ + +L+Q + S T+ +E ++ F ++ KL R+++ + E + R
Sbjct: 64 K-DVSMGYLAQNTGLETSLTIWDEMLTVFTHLQQMETKLRRLEQEMGKEENFSNEATYER 122
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXX 275
LL ++D LQ + +A + ++ LGF + +++ S G + R++LGK+
Sbjct: 123 LLADYDQLQLDYKDQGGYQYEADIRSILSGLGFPVETHQTTISTLSGGQKTRLALGKLLL 182
Query: 276 XXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
EPTNHLD++T+ WLE YL ++I+SHDR FLD+L T++ E SR
Sbjct: 183 TKPDLLILDEPTNHLDIETLTWLEQYLQGYPGAILIVSHDRYFLDKLVTQVYEISNKESR 242
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXX 395
+ GNYS+Y+ K+A E + +EKQQ EI + +D + +
Sbjct: 243 RFVGNYSKYLDLKSALYEQEMKRYEKQQDEIAKLEDFVQK--NIARASTTKRAQSRRKQL 300
Query: 396 XXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
P K F +SG V+ +K+ GY+ + + + RG+ A
Sbjct: 301 DRMELLTRPLGDSKSASFHFDIEKQSGNDVLQVKDATIGYDKDPIIEHVTMRLTRGDSVA 360
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
++GPNG GKSTLLK I+ G+V G NV Y++Q QA L K VL + +
Sbjct: 361 LVGPNGIGKSTLLKSIVNKLPLLHGDVSFGS-NVSVGYYDQEQAN-LTSSKRVLNELWDE 418
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+I+ +LG F D + + VS LSGG+KARLA K M++ S LL+LDEPTNHL
Sbjct: 419 YPLQPEKEIRTILGNFLFTGDDVLKPVSSLSGGQKARLALAKLMMQKSNLLILDEPTNHL 478
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
D+ SKE+LE A+ +Y GT++ VSHDRYF+ ++ V+E+ Q+Y GDY+
Sbjct: 479 DLNSKEILENALIDYPGTLLFVSHDRYFINRVTTTVIELSTEGAQEYLGDYD 530
|
|
| TIGR_CMR|BA_0262 BA_0262 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 177/532 (33%), Positives = 278/532 (52%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SK Y T+L ++ E AGK+T L+IIAG+ D G +IK
Sbjct: 4 LQVNALSKLYGAETILANIKLEVQTKDRIALVGRNGAGKSTLLKIIAGELSHDGGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
K ++ + +L+Q + S T+ +E ++ F ++ KL R+++ + E + R
Sbjct: 64 K-DVSMGYLAQNTGLETSLTIWDEMLTVFTHLQQMETKLRRLEQEMGKEENFSNEATYER 122
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXX 275
LL ++D LQ + +A + ++ LGF + +++ S G + R++LGK+
Sbjct: 123 LLADYDQLQLDYKDQGGYQYEADIRSILSGLGFPVETHQTTISTLSGGQKTRLALGKLLL 182
Query: 276 XXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
EPTNHLD++T+ WLE YL ++I+SHDR FLD+L T++ E SR
Sbjct: 183 TKPDLLILDEPTNHLDIETLTWLEQYLQGYPGAILIVSHDRYFLDKLVTQVYEISNKESR 242
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXX 395
+ GNYS+Y+ K+A E + +EKQQ EI + +D + +
Sbjct: 243 RFVGNYSKYLDLKSALYEQEMKRYEKQQDEIAKLEDFVQK--NIARASTTKRAQSRRKQL 300
Query: 396 XXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
P K F +SG V+ +K+ GY+ + + + RG+ A
Sbjct: 301 DRMELLTRPLGDSKSASFHFDIEKQSGNDVLQVKDATIGYDKDPIIEHVTMRLTRGDSVA 360
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
++GPNG GKSTLLK I+ G+V G NV Y++Q QA L K VL + +
Sbjct: 361 LVGPNGIGKSTLLKSIVNKLPLLHGDVSFGS-NVSVGYYDQEQAN-LTSSKRVLNELWDE 418
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+I+ +LG F D + + VS LSGG+KARLA K M++ S LL+LDEPTNHL
Sbjct: 419 YPLQPEKEIRTILGNFLFTGDDVLKPVSSLSGGQKARLALAKLMMQKSNLLILDEPTNHL 478
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
D+ SKE+LE A+ +Y GT++ VSHDRYF+ ++ V+E+ Q+Y GDY+
Sbjct: 479 DLNSKEILENALIDYPGTLLFVSHDRYFINRVTTTVIELSTEGAQEYLGDYD 530
|
|
| TIGR_CMR|GSU_2093 GSU_2093 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 178/534 (33%), Positives = 274/534 (51%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ L NI+K + + +D +++ AGKTT RII G+EE D+G + A
Sbjct: 2 IHLSNITKQHGNQLLFRDASFQILPGSRTGLVGPNGAGKTTIFRIITGEEEVDAGEITCA 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K I + SQ+ RT EE M+ E + +A +L+ ++ A+ +DD D M LL
Sbjct: 62 KRT-SIGYFSQDVGEMAGRTALEEVMAVSAETVRLAAELKEMEAAMAEPMDD-DAMAALL 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
+ + + + LD + ++ LG D D V SFS GW+MR++L I
Sbjct: 120 ERYGTAMEEFEHRGGYDLDTRARTILTGLGIGPDRYDHPVESFSGGWKMRIALAGILTLQ 179
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYL-GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336
EPTNHLD+++I WLE +L G+ +++ SHDR F++++ T+I+E T
Sbjct: 180 PDVLLLDEPTNHLDVESIIWLEEWLAGEFTGALLMTSHDRDFMNRIVTRIIEVADKTVTT 239
Query: 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXX 396
Y GNY Y E+ E A+ ++QQ + + ++ I R
Sbjct: 240 YGGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKI 299
Query: 397 XXXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----DRLLFNRANLTIERGE 451
P + + ++ F + RSG V L + ++ +F+ + I R
Sbjct: 300 DRIEI--PPEERVIRFEFNDPPRSGDDVAVFNGLAKSWSLPGGGEKSVFSGVSGVIRRQN 357
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV 511
K A++G NG GKST LK++ G +P G V LG NV YF Q+ E LD KTV ETV
Sbjct: 358 KIAVVGVNGAGKSTFLKVLAGRTEPTDGSVALGA-NVSLGYFSQHAMELLDPKKTVFETV 416
Query: 512 AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
+A I I+ LLG F D +D+++ LSGGEK+R+ + +P LVLDEPT
Sbjct: 417 QDAMPLATIGVIRNLLGAFLFSGDAVDKRIENLSGGEKSRVVLATLLARPLNFLVLDEPT 476
Query: 572 NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
NHLDI S+E+L +A+ + GTV+ VSHDR+F++ +V+RV E+ ++ Y G+Y
Sbjct: 477 NHLDIRSREILLDALQNFTGTVVLVSHDRHFLRLLVDRVFEIDHGEMRIYEGNY 530
|
|
| TIGR_CMR|BA_0228 BA_0228 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 170/533 (31%), Positives = 279/533 (52%)
Query: 100 LENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ N++KS+ G + ++++ E +GKTT +++ G E D+G I K
Sbjct: 6 VNNVTKSFGGNIIFENISLEIKNGERVGLVGRNGSGKTTIFQLLTGMESLDAG-AIHMKK 64
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
+I ++Q + S TV E SAFK E E+ ++ ++K + + ++ +L++
Sbjct: 65 GTRIGHVAQIPKFDESMTVYEVLSSAFKIEKELEREMRTLEKDMAEE-QESSVLQKLMER 123
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXX 279
+ ++Q K + ++A + K+ L T + R S G Q ++SL +
Sbjct: 124 YGIIQEKFAFLGGYEIEANIMKVANGLQVT-ELFPRSFLELSGGEQTKVSLAYMLLQKPD 182
Query: 280 XXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
EPTNHLDL +EWLE +L + + +++ISHDR FLD++ TKI + E G Y
Sbjct: 183 LLLLDEPTNHLDLFAVEWLEQFLKEYNGTVMVISHDRYFLDEVVTKIFDLEDGEIHVYHT 242
Query: 340 NYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXX------XXXXXXXXX 393
NYS++V EK + ++ A+++QQ++I++ K+ I RL
Sbjct: 243 NYSRFVEEKEERLLQEFQAYQEQQKKIKKMKEAIKRLREWANQANPPNEGLHKRARSMER 302
Query: 394 XXXXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEK 452
P +RKQ+ ++F + RSG+ VV IK + G+ D LFN NL + E+
Sbjct: 303 ALERMQKLKKPILERKQIGLQFEGQDRSGKDVVVIKEVSKGFADHPLFNEVNLHVRFQER 362
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
AI+G NG GK+TLLKL++ +P GE+ +G +V Y Q+ + D VLE
Sbjct: 363 AAIVGRNGTGKTTLLKLLLEEIEPDAGEIRIGS-SVKIGYLSQHAYGNMKSD--VLEAFR 419
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
E + + +L + F + +KV+ LSGGEK RL + M + L+LDEPTN
Sbjct: 420 EYVAVTE-GEARHILAKFLFYGPAVFKKVTQLSGGEKMRLRLAQLMYQDINFLILDEPTN 478
Query: 573 HLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
HLDI S+E+LEEA+ +Y GT++ VSHDRYF+ ++ + + L ++AG+Y
Sbjct: 479 HLDIESREVLEEALEQYNGTILAVSHDRYFLNKLFEKTYWIDEHKLFEFAGNY 531
|
|
| UNIPROTKB|P0A9U3 ybiT "putative ATP-binding component of a transport system" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 150/493 (30%), Positives = 253/493 (51%)
Query: 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193
+GK+T ++I+ G EP GNV N +I L Q+ TV + + KE E+
Sbjct: 38 SGKSTFMKILGGDLEPTLGNV-SLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVK 96
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
+ +R+ E + +D G + + ++ K ++ + +A+ +L+ +G +
Sbjct: 97 QERDRIYALPEMSEED----GYKVADLEV---KYGEMDGYSAEARAGELLLGVGIPVEQH 149
Query: 254 DRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIIS 313
++ + GW++R+ L + EPTN+LD+DTI WLE L ++D M+IIS
Sbjct: 150 YGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIIS 209
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
HDR FL+ +CT + + + G R Y GNY +Y+ E A K++ +I + + +
Sbjct: 210 HDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFV 269
Query: 374 NRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFG 433
+R R+ IRF + + R+ + ++ L G
Sbjct: 270 SRFSANASKSRQATSRARQIDKIKLEEVKAS-SRQNPFIRFEQDKKLFRNALEVEGLTKG 328
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493
+++ LF NL +E GEK A++G NG GKSTLLK ++G +P G V E N Y+
Sbjct: 329 FDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYY 387
Query: 494 EQNQAEALDLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
Q+ + D TV E +++ ++ + ++ +LGR F D + + +LSGGEK R+
Sbjct: 388 AQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRM 447
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVE 612
F K M++ +L++DEPTNHLD+ S E L A+ Y+GT+I VSHDR FV + R++E
Sbjct: 448 LFGKLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILE 507
Query: 613 VKGSNLQDYAGDY 625
+ + D++G+Y
Sbjct: 508 ITPERVIDFSGNY 520
|
|
| UNIPROTKB|Q9KRW4 VC1520 "ABC transporter, ATP-binding protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 152/529 (28%), Positives = 265/529 (50%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ NI++ + + ++++ + GK+T ++I++G+ EP GNV
Sbjct: 2 ISTANITQQFGAKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILSGELEPSGGNV-SY 60
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
N ++A L+Q+ TV + + KE ++ + +R+ AL ++ D M R+
Sbjct: 61 DPNERVAKLNQDQFAYEEFTVIDTVIMGHKELWKVKQERDRIY-ALPEMTEE-DGM-RVA 117
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
D L+ + ++ ++K +L+ +G + L++S + GW++R+ L +I
Sbjct: 118 D----LEVEFAEMDGYMAESKAGELLLAVGIPLEQHYGLMSSVAPGWKLRVLLAQILFAD 173
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
EPTN+LD+DTI WLE L ++ M+IISHDR FL+ +CT + + + G R Y
Sbjct: 174 PDIMLLDEPTNNLDIDTIRWLEDTLNARNCTMIIISHDRHFLNSVCTHMADLDYGELRIY 233
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXX 397
GNY +Y+ E + K++ +I + + + R
Sbjct: 234 PGNYDEYMTAATQARERLLSDNAKKKAQIAELQTFVARFSANASKAKQATSRARQIDKIK 293
Query: 398 XXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
R+ IRF + R+ + ++NL G+ D LF+ N E GE+ AIIG
Sbjct: 294 LDEVKAS-SRQNPFIRFEQSKELFRNALIVENLSQGF-DHDLFSNFNAIFEVGERVAIIG 351
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
NG GK+TLL + G+ +PR G E++ + Y+ Q+ A D ++E + + ++
Sbjct: 352 ENGVGKTTLLNTLAGVLEPRSGMYKWSENSNI-GYYAQDHAHEFAEDLNLMEWMGQWRQE 410
Query: 518 WRIDDI-KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
+ + + LGR F D + + V +LSGGE+ R+ K M+ +L+LDEPTNH+D+
Sbjct: 411 GDDEQVVRSFLGRMLFGQDDIKKSVKVLSGGEQGRMLLGKLMMHKPNMLLLDEPTNHMDM 470
Query: 577 PSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
S E L A+ +YKGT+ VSHDR FV + R++E++ + D+ G Y
Sbjct: 471 ESIESLNNALEQYKGTLFFVSHDRVFVDSLATRIIEIRDGKITDFKGTY 519
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9FIB4 | AB2F_ARATH | No assigned EC number | 0.7765 | 0.9309 | 0.8952 | no | no |
| Q8T6B7 | ABCF2_DICDI | No assigned EC number | 0.3188 | 0.8435 | 0.9274 | yes | no |
| Q9LV93 | AB5F_ARATH | No assigned EC number | 0.7948 | 0.9432 | 0.8887 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 652 | |||
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 0.0 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-110 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-103 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 8e-99 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-95 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-80 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-68 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-56 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-51 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-43 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-35 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-34 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-34 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-33 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-33 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-33 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-32 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-32 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-31 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-30 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-30 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-30 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-30 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-30 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-30 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-29 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-29 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-28 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-28 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 8e-28 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-27 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-27 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-27 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-27 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-26 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-25 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-25 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-25 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-25 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-25 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-25 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-25 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-25 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 8e-25 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-24 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-24 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-24 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-24 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-23 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-23 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-23 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-23 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-23 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 8e-23 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-23 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 9e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 9e-23 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-22 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-22 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-22 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-22 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-21 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-21 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-21 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-21 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-21 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-21 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-21 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-21 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-21 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-21 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 5e-21 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-21 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 6e-21 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-21 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-21 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-21 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-20 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-20 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-20 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-20 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-20 | |
| pfam12848 | 85 | pfam12848, ABC_tran_2, ABC transporter | 2e-20 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-20 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-20 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-20 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-20 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-20 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-20 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-20 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 5e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-20 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-19 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-19 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-19 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-19 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-19 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-19 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-19 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-19 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-19 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-19 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-19 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-19 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-19 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-19 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-19 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-19 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 7e-19 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-18 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-18 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-18 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-18 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-18 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-18 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-18 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-18 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-18 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-18 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-18 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-18 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-18 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-18 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-18 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-18 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 8e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-18 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 9e-18 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 9e-18 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-17 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-17 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-17 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-17 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-17 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-17 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-17 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-17 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-17 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-17 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-17 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-17 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-17 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-17 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-17 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-17 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-17 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-17 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-17 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-17 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 7e-17 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-17 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-17 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 9e-17 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 9e-17 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-16 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-16 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-16 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-16 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-16 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-16 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-16 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-16 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-16 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-16 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-16 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-16 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-16 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-16 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 8e-16 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-15 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-15 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-15 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-15 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-15 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-15 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-15 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-15 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-15 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-15 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-15 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 7e-15 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-15 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 8e-15 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 9e-15 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 9e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-14 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-14 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-14 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-14 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-14 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-14 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-14 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-14 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-14 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-14 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-14 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-14 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 6e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 8e-14 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 8e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-14 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-13 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-13 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-13 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-13 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-13 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-13 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-13 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-13 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-13 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-13 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-13 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-13 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-13 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-13 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-13 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-13 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-13 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-13 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-13 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 7e-13 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 8e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 8e-13 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-12 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-12 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-12 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-12 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-12 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-12 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-12 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-12 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-12 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 3e-12 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-12 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-12 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-12 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 4e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-12 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-12 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 5e-12 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-12 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-12 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-12 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 6e-12 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-12 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-12 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-12 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-12 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 9e-12 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-11 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-11 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-11 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-11 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-11 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-11 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-11 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-11 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-11 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-11 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-11 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-11 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-10 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-10 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-10 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-10 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-10 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-10 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-10 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-10 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-10 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-10 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-10 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-10 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-10 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 5e-10 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-10 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-10 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-10 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 7e-10 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 9e-10 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 9e-10 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-09 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-09 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 1e-09 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-09 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 3e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-09 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-09 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-09 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-09 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 4e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-09 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 5e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-09 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 6e-09 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-09 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 7e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 7e-09 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 7e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 8e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-09 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 9e-09 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 9e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-08 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-08 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-08 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-08 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-08 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-08 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 3e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-08 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-08 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-08 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-08 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-08 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 9e-08 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-07 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 4e-07 | |
| cd03278 | 197 | cd03278, ABC_SMC_barmotin, ATP-binding cassette do | 4e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-07 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 5e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-07 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 7e-07 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-07 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 8e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 8e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 8e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-06 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-06 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 5e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 6e-06 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 6e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 9e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-05 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 3e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 5e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 7e-05 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 7e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 9e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 9e-05 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-04 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 3e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-04 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-04 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 6e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 6e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-04 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 0.001 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.001 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.001 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 0.001 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.001 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.002 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 0.002 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.002 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.002 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.002 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.002 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.002 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.002 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.002 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.003 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 0.003 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 0.003 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.003 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 0.003 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 0.003 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.003 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.003 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.003 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 0.004 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 0.004 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.004 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 0.004 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.004 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 0.004 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.004 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 541 bits (1395), Expect = 0.0
Identities = 223/532 (41%), Positives = 334/532 (62%), Gaps = 19/532 (3%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
LEN+S +Y +L++V+ + GE++GLVG NGAGK+T L+I+AG+ EPDSG V + K
Sbjct: 5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ +LSQE + +TV + + F E E+ +LE L A D +L+ L
Sbjct: 65 -GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL--ADPDDELLAELEA 121
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+ L TL+A+ + + LGF +D R V+S S GW+ R++L + LL++P
Sbjct: 122 LLEELDG-------WTLEARAEEALLGLGFPDED--RPVSSLSGGWRRRVALARALLEEP 172
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
DLLLLDEPTNHLDL++IEWLE YL + ++++SHDR FLD + T I+E + G Y+
Sbjct: 173 DLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYK 232
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQE 397
GNYS Y+ +KA + + AA+EKQQ+E+ + ++ I R A A+ + +A S K+LE+L+
Sbjct: 233 GNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEA 292
Query: 398 EEQIEKPFQR-KQMKIRF-PERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTA 454
E+P + K + RF P R G+ V+ +N+ GY+ RLL + I+RG++ A
Sbjct: 293 RLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIA 352
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
I+GPNG GKSTLLKL+ G P G V +GE V YF+Q++ E LD DKTVLE ++E
Sbjct: 353 IVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-TVKIGYFDQHRDE-LDPDKTVLEELSEG 410
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
D +++ LGR F + ++ V +LSGGEKARL K +++P LL+LDEPTNHL
Sbjct: 411 FPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHL 470
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
DI S E LEEA+ +++GTV+ VSHDRYF+ ++ R+ V+ ++++ G Y
Sbjct: 471 DIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYE 521
|
Length = 530 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 343 bits (881), Expect = e-110
Identities = 184/539 (34%), Positives = 298/539 (55%), Gaps = 48/539 (8%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGE--KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
ENIS VK G + GL+G NG GK+T ++I+ G EP +GNV
Sbjct: 18 ENIS---------------VKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD- 61
Query: 159 SNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
N ++ L Q+ FE TV + + E E+ + +R+ E + +D +
Sbjct: 62 PNERLGKLRQDQFAFE---EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVAD 118
Query: 216 LLDEFDLLQRKAQAVNLD--TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
L +F +D T +A+ +L+ +G + L++ + GW++R+ L +
Sbjct: 119 LEVKF---------AEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQA 169
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
L +PD+LLLDEPTN+LD++TI WLE L +++ M+IISHDR FL+ +CT + + + G
Sbjct: 170 LFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGE 229
Query: 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKL 392
R Y GNY +Y+ E A K++ +I + + ++R A A+ + A+S K++
Sbjct: 230 LRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQI 289
Query: 393 ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEK 452
++++ EE KP R+ IRF + + R+ + ++NL G+++ LF NL +E GE+
Sbjct: 290 DKIKLEEV--KPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGER 347
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
AIIG NG GK+TLL+ ++G +P G V E N Y+ Q+ A + D T+ + ++
Sbjct: 348 LAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-NANIGYYAQDHAYDFENDLTLFDWMS 406
Query: 513 EAAEDWRI--DD---IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567
+ WR DD ++G LGR F D + + V +LSGGEK R+ F K M++ +LV+
Sbjct: 407 Q----WRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462
Query: 568 DEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
DEPTNH+D+ S E L A+ +Y+GT+I VSHDR FV + R++E+ + D++G Y
Sbjct: 463 DEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYE 521
|
Length = 530 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 323 bits (831), Expect = e-103
Identities = 174/539 (32%), Positives = 282/539 (52%), Gaps = 29/539 (5%)
Query: 102 NISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+SK +LKD++ G K+G++G+NGAGK+T LRI+AG ++ +G A
Sbjct: 9 RVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-G 67
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
+K+ +L QE ++ ++TVRE E + + + DMD LL E
Sbjct: 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMD---ALLAEQ 124
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
LQ A + LD K+ M L D D V S G + R++L ++LL PD+
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPPWDAD--VTKLSGGERRRVALCRLLLSKPDM 182
Query: 281 LLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
LLLDEPTNHLD +++ WLE +L Q+ P +V ++HDR FLD + I+E + G +E
Sbjct: 183 LLLDEPTNHLDAESVAWLEQHL--QEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWE 240
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
GNYS ++ +K +E + +Q+ +++ + + R A ++ + + E L +
Sbjct: 241 GNYSSWLEQKEKRLEQEEKEESARQKALKRELEWV-RSSPKARQAKSKARLARYEELLSQ 299
Query: 399 EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGP 458
E ++ + +I P R G V+ +NL G+ D+LL + + + G +IGP
Sbjct: 300 EFQKRN---ETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGP 356
Query: 459 NGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518
NG GKSTL ++I G E+P G + +GE V Y +Q++ +ALD +KTV E ++ +
Sbjct: 357 NGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSR-DALDPNKTVWEEISGGLDII 414
Query: 519 RIDDI----KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
++ + +GR NFK +KV LSGGE+ R+ K + +L+LDEPTN L
Sbjct: 415 QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDL 474
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGS--------NLQDYAGDY 625
D+ + LEEA+ E+ G + +SHDR+F+ +I ++ +G N +Y D
Sbjct: 475 DVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDK 533
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = 8e-99
Identities = 169/499 (33%), Positives = 269/499 (53%), Gaps = 24/499 (4%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LKD++ G K+G++G+NGAGK+T LRI+AG ++ G A +K+ +L QE +
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQ 80
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ +TVRE E + + A D D L E LQ A +
Sbjct: 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFD---ALAAEQGELQEIIDAAD 137
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
LD+++ M L D V S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 138 AWDLDSQLEIAMDALRCPPWDAK--VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Query: 292 LDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKA 349
+++ WLE +L D P +V ++HDR FLD + I+E + G +EGNYS ++ +KA
Sbjct: 196 AESVAWLEQFL--HDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKA 253
Query: 350 AWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQ 409
+ + +Q+ +++ + + R R + ++ +L R EE + + +Q++
Sbjct: 254 KRLAQEEKQEAARQKALKRELEWV-RQSP---KARQAKSKARLARY--EELLSEEYQKRN 307
Query: 410 MK--IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL 467
I P R G V+ +NL + DRLL + + ++ G IIGPNG GKSTL
Sbjct: 308 ETNEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLF 367
Query: 468 KLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI---- 523
K+I G E+P G + +GE V Y +Q++ +ALD +KTV E ++ + ++ +
Sbjct: 368 KMITGQEQPDSGTIKIGE-TVKLAYVDQSR-DALDPNKTVWEEISGGLDIIKVGNREIPS 425
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
+ +GR NFK +KV +LSGGE+ RL K + + +L+LDEPTN LD+ + LE
Sbjct: 426 RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALE 485
Query: 584 EAISEYKGTVITVSHDRYF 602
EA+ E+ G + +SHDR+F
Sbjct: 486 EALLEFPGCAVVISHDRWF 504
|
Length = 556 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 306 bits (787), Expect = 2e-95
Identities = 186/527 (35%), Positives = 291/527 (55%), Gaps = 43/527 (8%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + S+ +L + ++ E+V LVG NGAGK+T ++I+ G+ D G +I
Sbjct: 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ ++ +A L Q+ ++ TV + F++ EE A L+R D + L
Sbjct: 64 Q-DLIVARLQQDPPRNVEGTVYD-FVAEGIEE--QAEYLKRYHDISHLVETDP--SEKNL 117
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+E LQ + NL L+ ++++++ +LG D D ++S S GW + +LG+ L+ +
Sbjct: 118 NELAKLQEQLDHHNLWQLENRINEVLAQLGL---DPDAALSSLSGGWLRKAALGRALVSN 174
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
PD+LLLDEPTNHLD++TIEWLEG+L ++ ISHDR+F+ + T+IV+ + G +Y
Sbjct: 175 PDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSY 234
Query: 338 EGNYSQYVLEKAAWI---ESQYAAWEKQ--QRE--IEQTKDLINRLGAGA----NSGRAS 386
GNY QY+LEK + E Q A ++++ Q E I Q G A N GR
Sbjct: 235 PGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ--------GIKARRTRNEGRV- 285
Query: 387 SAEKKL--ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
A K L ER + E + K++ E RSG+ V ++N+ + + + L +
Sbjct: 286 RALKALRRERSERREVMGT------AKMQVEEASRSGKIVFEMENVNYQIDGKQLVKDFS 339
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
++RG+K A+IGPNGCGK+TLLKL++G + G + G + YF+Q++AE LD +
Sbjct: 340 AQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAE-LDPE 397
Query: 505 KTVLETVAEAAEDWRIDDIK----GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560
KTV++ +AE ++ ++ G L F V LSGGE+ RL + +K
Sbjct: 398 KTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK 457
Query: 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
PS LL+LDEPTN LD+ + E+LEE + Y+GTV+ VSHDR FV V
Sbjct: 458 PSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTV 504
|
Length = 635 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 3e-80
Identities = 171/521 (32%), Positives = 279/521 (53%), Gaps = 24/521 (4%)
Query: 108 KGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
+GV VL D T + G+KVGLVG NG GK+T L ++ + D G+ N ++A++
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY-TFPGNWQLAWV 69
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+QE ++ + E + +E +++ L A + D G + + K
Sbjct: 70 NQE-TPALPQPALEYVIDGDRE-------YRQLEAQLHDANERND--GHAIA---TIHGK 116
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A++ T+ ++ + L+ LGF+ + +R V+ FS GW+MR++L + L+ DLLLLDEP
Sbjct: 117 LDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 287 TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346
TNHLDLD + WLE +L +++ISHDR FLD + KI+ E Y GNYS + +
Sbjct: 177 TNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236
Query: 347 EKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQ--EEEQIEK 403
++A + Q A +E QQ + + I+R A A + A S K LER++ ++
Sbjct: 237 QRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDN 296
Query: 404 PFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463
PF R PE + ++ ++ + GY DR++ + L + G + ++G NG GK
Sbjct: 297 PF---HFSFRAPESLPN--PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGK 351
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523
STL+KL+ G P GE+ L + L YF Q+Q E L D++ L+ +A A +
Sbjct: 352 STLIKLLAGELAPVSGEIGLAKGIKL-GYFAQHQLEFLRADESPLQHLARLAPQELEQKL 410
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
+ LG F+ D + + SGGEKARL + + LL+LDEPTNHLD+ ++ L
Sbjct: 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGD 624
EA+ +++G ++ VSHDR+ ++ + + V ++ + GD
Sbjct: 471 EALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGD 511
|
Length = 638 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 2e-68
Identities = 161/539 (29%), Positives = 266/539 (49%), Gaps = 31/539 (5%)
Query: 82 YSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR 141
Y N N G +I + +EN S S G ++ D + + G GLVG NG GKTT LR
Sbjct: 163 YVNHDGNGGGPAIKD-IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLR 221
Query: 142 IIAGQEEPDSGNVIKAKSNMKIAFLSQEF--------------EVSMSRTVREEF-MSAF 186
+A + N +I + QE ++ ++ + EE + A
Sbjct: 222 YMAMHA------IDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQ 275
Query: 187 KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246
+ E+E + + + A + VD D + + L+E + ++ + ++ T +A+ + ++ L
Sbjct: 276 QRELEFETETGKGKGANKDGVDK-DAVSQRLEE---IYKRLELIDAYTAEARAASILAGL 331
Query: 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD 306
FT + + +FS GW+MR++L + L +PDLLLLDEPTNHLDL + WLE YL K
Sbjct: 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP 391
Query: 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREI 366
+++SH R FL+ + T I+ TY+G+Y + + +++Q A+E +R
Sbjct: 392 KTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSR 451
Query: 367 EQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE-RGRSGRSVV 425
+ I++ N+ RAS + +++ L ++ K FP R G ++
Sbjct: 452 SHMQAFIDKF--RYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPII 509
Query: 426 TIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + FGY LLF N I+ + A++GPNG GKST+LKLI G +P G V
Sbjct: 510 SFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRS 569
Query: 485 EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
V F Q+ + LDL L + ++ LG ++ + + L
Sbjct: 570 A-KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 628
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFV 603
SGG+K+R+AF K K +L+LDEP+NHLD+ + E L + + ++G V+ VSHD + +
Sbjct: 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLI 687
|
Length = 718 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 2e-56
Identities = 73/191 (38%), Positives = 96/191 (50%), Gaps = 49/191 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y +LL +LTI G++ ++G NG GKSTLLKLI G +P G V G
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 485 EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
V YFEQ L
Sbjct: 61 -STVKIGYFEQ------------------------------------------------L 71
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVK 604
SGGEK RLA K +++ LL+LDEPTNHLD+ S E LEEA+ EY GTVI VSHDRYF+
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLD 131
Query: 605 QIVNRVVEVKG 615
Q+ +++E++
Sbjct: 132 QVATKIIELED 142
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 2e-51
Identities = 84/237 (35%), Positives = 117/237 (49%), Gaps = 37/237 (15%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S++T++NL Y DR L +LT+ GE+ ++G NG GKSTLLK++ G +P GEV
Sbjct: 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-------------IDDIKGLLGR 529
+ Y Q LD +KTVL+ V E + R D LL
Sbjct: 62 R-PKGLRVGYLSQEP--PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAE 118
Query: 530 CNFKADMLD---------------------RKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
+ LD R VS LSGG + R+A + +++ LL+LD
Sbjct: 119 LEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLD 178
Query: 569 EPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
EPTNHLD+ S E LE+ + Y GTVI VSHDRYF+ + ++E+ L Y G+Y
Sbjct: 179 EPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY 235
|
Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 1e-43
Identities = 118/567 (20%), Positives = 224/567 (39%), Gaps = 124/567 (21%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--- 150
+++EN++ + V ++DV++EV+ GE +G+VG +G+GK+T + G
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 151 -SGNVIKAKSNMKIAFLSQEFEVSMSRT--VREEFMSAFKEEMEIAGKLERVQKALESAV 207
SG VI ++ + ++ R + ++ M++ M I ++ +
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS-FSSGWQM 266
+ + +AV +L+ ++G + S G +
Sbjct: 126 RA--------------EARKRAV----------ELLEQVGLPDPERRDRYPHQLSGGMRQ 161
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQL 322
R+ + L P LL+ DEPT LD+ T ++ L+ + + ++ I+HD + +L
Sbjct: 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL 221
Query: 323 CTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382
++V V+ K +E+ + T+ L+ +
Sbjct: 222 ADRVV-----------------VMYKGEIVETGPTEEILSNPQHPYTRGLLAAV------ 258
Query: 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYEDR-LLF 440
P + IR P RG +++++NL Y R LF
Sbjct: 259 ---------------------PRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLF 297
Query: 441 NRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490
R + + GE ++G +G GKSTL +++ GL P G ++ ++
Sbjct: 298 VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357
Query: 491 NYFE------------QNQAEALDLDKTVLETVAE----------AAEDWRIDDIKGLLG 528
E Q+ +L+ TV + +AE A R+ ++ L+G
Sbjct: 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEE 584
+ LDR LSGG++ R+A + + LL+LDEP + LD+ + +L++
Sbjct: 418 ---LPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVV 611
E T + +SHD V+ I +RV
Sbjct: 475 LQEELGLTYLFISHDLAVVRYIADRVA 501
|
Length = 539 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-35
Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 25/178 (14%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
++NL GY R + + +L+IE GE I+GPNG GKSTLLK + GL KP GE+LL
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
++ +L + + V +A E + A + DR + LS
Sbjct: 61 KDL-------ASLSPKELARKIA-YVPQALELLGL-------------AHLADRPFNELS 99
Query: 546 GGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EMLE--EAISEYKG-TVITVSHD 599
GGE+ R+ + + + +L+LDEPT+HLDI + E+LE ++ +G TV+ V HD
Sbjct: 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-34
Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 51/257 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++K + + K++ ++ GE++ ++G NG GKTT LR + G+ EPDSG +K
Sbjct: 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG-TVKW 378
Query: 158 KSNMKIAFLSQ----EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
N I + +Q +FE ++ ++MS +++E E AV +
Sbjct: 379 SENANIGYYAQDHAYDFENDLTLF---DWMSQWRQE-----------GDDEQAVRGT--L 422
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
GRLL F+ DD + V S G + RM GK+
Sbjct: 423 GRLL------------------------------FSQDDIKKSVKVLSGGEKGRMLFGKL 452
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
++Q P++L++DEPTNH+D+++IE L L K + ++ +SHDR F+ L T+I+E
Sbjct: 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDG 512
Query: 334 SRTYEGNYSQYVLEKAA 350
+ G Y +Y+ +
Sbjct: 513 VVDFSGTYEEYLRSQGI 529
|
Length = 530 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 7e-34
Identities = 61/195 (31%), Positives = 91/195 (46%), Gaps = 47/195 (24%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
I+NL F Y R + +LT++ GE A++GPNG GKSTLL+ I GL KP GE+L+
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-- 543
++ E+ L R++
Sbjct: 61 KDIAKLPLEE-----------------------------------------LRRRIGYVP 79
Query: 544 -LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHD 599
LSGG++ R+A + ++ LL+LDEPT+ LD S+E L E + E TVI V+HD
Sbjct: 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
Query: 600 RYFVKQIVNRVVEVK 614
+ +RV+ +K
Sbjct: 140 PELAELAADRVIVLK 154
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 1e-33
Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 23/206 (11%)
Query: 427 IKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+KNL F Y D R + +LTI++GE I+GPNG GKSTLL+L+ GL P GEVL+
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 485 EHNVLPNYFE----------QNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLG 528
++ + QN + TV E VA E + + ++ L
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQN-PDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+ + DR LSGG+K R+A + +L+LDEPT LD + L E + +
Sbjct: 121 LVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179
Query: 589 YKG---TVITVSHDRYFVKQIVNRVV 611
K T+I V+HD + ++ +RV+
Sbjct: 180 LKAEGKTIIIVTHDLDLLLELADRVI 205
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-33
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 54/244 (22%)
Query: 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ N++K Y G T L V++EV+ GE GL+G NGAGKTT L+I+AG +P SG ++
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
AK +I ++ QE + TVR E +E +L + K
Sbjct: 65 LGYDVVKEPAKVRRRIGYVPQEPSLYPELTVR--------ENLEFFARLYGLSKE----- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ + + LL+ F L D ++ V + S G + R
Sbjct: 112 EAEERIEELLELFGL---------------------------EDKANKKVRTLSGGMKQR 144
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+S+ LL DP+LL+LDEPT+ LD + E L + V +++ +H ++LC
Sbjct: 145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELC 204
Query: 324 TKIV 327
+++
Sbjct: 205 DRVI 208
|
Length = 293 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 31/203 (15%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++NL FGY + + + + +I +GE T I+GPNG GKSTLLK + GL KP+ GEVL
Sbjct: 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 483 LGEHNV--LPN--------YFEQNQAEALDLDKTVLETVA------------EAAEDWRI 520
L ++ L Y Q+ + L TV E V + ED I
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGL--TVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK- 579
++ L + DR V LSGGE+ R+ + + + + +L+LDEPT+HLDI +
Sbjct: 119 --VEEALELLGL-EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI 175
Query: 580 ---EMLEEAISEYKGTVITVSHD 599
E+L + E TV+ V HD
Sbjct: 176 EVLELLRDLNREKGLTVVMVLHD 198
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-32
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 25/210 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ ++NL Y +R + +L++E+GE TA+IGPNG GKSTLLK I+GL KP GE+ +
Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 484 GEHNVLPN-------YFEQNQAEALDLDKTVLETVA------------EAAEDWRIDDIK 524
V Y Q + TV + V +D +
Sbjct: 64 FGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK--VD 121
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
L R + D+ DR++ LSGG+K R+ + + + LL+LDEP +D+ ++ + +
Sbjct: 122 EALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD 180
Query: 585 AISEYKG---TVITVSHDRYFVKQIVNRVV 611
+ E + TV+ V+HD V +RV+
Sbjct: 181 LLKELRQEGKTVLMVTHDLGLVMAYFDRVI 210
|
Length = 254 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 6e-32
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 31/219 (14%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ Y A NL IE GE AI+GP+G GKSTLL L+ GL+KP G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDK--------------TVLETVAEAAE------DWR 519
EVL+ ++ + + L K TVLE V R
Sbjct: 61 EVLINGKDL--TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
+ LL + +L +K S LSGG++ R+A + ++ +++ DEPT +LD +
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178
Query: 580 EMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVK 614
+ + E + E T+I V+HD + + +RV+E+K
Sbjct: 179 KEVLELLRELNKERGKTIIMVTHDP-ELAKYADRVIELK 216
|
Length = 226 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-31
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 33/214 (15%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485
+++L Y + + ++ GE AI+GPNG GKSTLLK I+GL KP G + + G+
Sbjct: 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 486 HNVLPN----YFEQNQAEALDLDK----TVLETVAEA------------AEDW-RIDDIK 524
Y Q +D+ +V + V D ++D+
Sbjct: 62 PLEKERKRIGYVPQR----RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEAL 117
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+G +++ DR++ LSGG++ R+ + +V+ LL+LDEP +D ++E + E
Sbjct: 118 ERVGL----SELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE 173
Query: 585 AISEYKG---TVITVSHDRYFVKQIVNRVVEVKG 615
+ E + T++ V+HD V + +RV+ +
Sbjct: 174 LLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-30
Identities = 83/252 (32%), Positives = 129/252 (51%), Gaps = 50/252 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+SK + ++ D+++++ G VG++G NGAGK+T R+I GQE+PDSG IK
Sbjct: 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-TIKI 381
Query: 158 KSNMKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+K+A++ Q + + ++TV E EI+G L+ +Q + ++ R
Sbjct: 382 GETVKLAYVDQSRDALDPNKTVWE----------EISGGLDIIQ------LGKREVPSR- 424
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
A V + F D + V S G + R+ L K L
Sbjct: 425 --------------------AYVGR----FNFKGSDQQKKVGQLSGGERNRVHLAKTLKS 460
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVS 334
++LLLDEPTN LD++T+ LE L + V+ISHDR FLD++ T I+ E G S
Sbjct: 461 GGNVLLLDEPTNDLDVETLRALEEAL--LEFAGCAVVISHDRWFLDRIATHILAFE-GDS 517
Query: 335 RT--YEGNYSQY 344
+EGNYS+Y
Sbjct: 518 HVEWFEGNYSEY 529
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-30
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 43/205 (20%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y + + +LT+E+GE ++GPNG GK+TL+K+I+GL KP GE+ +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 485 EHNVLPNYFEQN-------QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
++ E + +L + TV E +
Sbjct: 61 GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL-------------------------- 94
Query: 538 DRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTV 593
LSGG K RLA + + P LL+LDEPT+ LD S+ E + E K T+
Sbjct: 95 -----KLSGGMKQRLALAQALLHDPE-LLILDEPTSGLDPESRREFWELLRELKKEGKTI 148
Query: 594 ITVSHDRYFVKQIVNRVVEVKGSNL 618
+ SH +++ +RV + +
Sbjct: 149 LLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 21/207 (10%)
Query: 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V+ ++NL Y D+ + + +E GE ++GPNG GK+TLLK++ GL KP GE+L
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 483 LGEHNVLPNYFEQ-------NQAEALDLDKTVLETVAEAA------EDWRIDDIKGLLGR 529
+ ++V+ + Q +L + TV E + A ++ + I+ LL
Sbjct: 64 VLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLEL 123
Query: 530 CNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDIPS----KEMLEE 584
+ D ++KV LSGG K RL+ + P LL+LDEPT+ LD S E+L E
Sbjct: 124 FGLE-DKANKKVRTLSGGMKQRLSIALALLHDPE-LLILDEPTSGLDPESRREIWELLRE 181
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVV 611
E T++ +H +++ +RV+
Sbjct: 182 LAKEGGVTILLSTHILEEAEELCDRVI 208
|
Length = 293 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 3e-30
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 56/208 (26%)
Query: 425 VTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ KN+ F Y R + +LTI+ GEK AI+GP+G GKSTLLKL++ L P GE+L
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 483 LGEHNVLPNYFEQNQAEALDLD-----------KTVL--ETVAEAAEDWRIDDIKGLLGR 529
+ ++ LDL+ L T+ E
Sbjct: 61 IDGVDL----------RDLDLESLRKNIAYVPQDPFLFSGTIRE---------------- 94
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589
N +LSGG++ R+A + +++ +L+LDE T+ LD ++ ++ EA+
Sbjct: 95 -N-----------ILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL 142
Query: 590 KG--TVITVSHDRYFVKQIVNRVVEVKG 615
TVI ++H R + +R++ +
Sbjct: 143 AKGKTVIVIAH-RLSTIRDADRIIVLDD 169
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 5e-30
Identities = 71/212 (33%), Positives = 101/212 (47%), Gaps = 26/212 (12%)
Query: 423 SVVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ +NL F Y R +L IE+GE+ +IGPNG GKSTLLKL+ GL KP GEV
Sbjct: 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 482 LLGEHNVLPNYFE-----------QNQAEALDLDKTVLETVAEAAEDWRIDD------IK 524
L+ + QN + L TV + VA E+ + +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVA 120
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
L + ++LDR LSGG+K R+A + P +L+LDEPT LD + L
Sbjct: 121 EALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPE-ILLLDEPTAGLDPKGRRELL 178
Query: 584 EAISEYK----GTVITVSHDRYFVKQIVNRVV 611
E + + K T+I V+HD V + +RVV
Sbjct: 179 ELLKKLKEEGGKTIIIVTHDLELVLEYADRVV 210
|
Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 7e-30
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 31/218 (14%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KNL + +A + +I++GE ++G +G GKSTL + I+GL KP G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 480 EVLLGEHNVLPN-------------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526
++ ++L Q+ +L+ T+ E +AE K
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 527 LGRCNFK--------ADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIP 577
++L+R LSGG++ R+A + + P LL+ DEPT+ LD+
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPK-LLIADEPTSALDVS 179
Query: 578 SK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
+ ++L++ E T++ ++HD V +I +RV
Sbjct: 180 VQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVA 217
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 29/198 (14%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +K L Y + +LT+E GE A++GP+GCGK+TLL+LI GLE+P GE+L+
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 485 EHNV--LPNY-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGL 526
+V +P F+ AL TV E +A +A R+ ++ L
Sbjct: 61 GRDVTGVPPERRNIGMVFQDY---ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLEL 117
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----ML 582
+G +L+R LSGG++ R+A + + + +LL+LDEP + LD +E L
Sbjct: 118 VGL----EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREEL 173
Query: 583 EEAISEYKGTVITVSHDR 600
+E E T I V+HD+
Sbjct: 174 KELQRELGITTIYVTHDQ 191
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 2e-29
Identities = 39/69 (56%), Positives = 55/69 (79%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319
S G +MR++L K+LL++P+LLLLDEPTNHLDL++IE LE L + ++++SHDR FL
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 320 DQLCTKIVE 328
DQ+ TKI+E
Sbjct: 131 DQVATKIIE 139
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-28
Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 39/233 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K +++K+Y VL D++ VKKGE G +G NGAGKTT ++II G +PDSG
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG----- 55
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+I F + ++ ++ R + A E L +A +++ L+ RL
Sbjct: 56 ----EITFDGKSYQKNIEALRR---IGALIEAPGFYPNL--------TARENLRLLARL- 99
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
L ++ +++ +G D + V FS G + R+ + LL +
Sbjct: 100 --------------LGIRKKRIDEVLDVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGN 144
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
PDLL+LDEPTN LD D I+ L L Q + ++I SH + + ++ +I
Sbjct: 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIG 197
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-28
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 15/199 (7%)
Query: 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
I+N+ F Y+ + + +L + GE A+ G NG GK+TL K++ GL K G +LL
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 485 EHNVLP-------NYFEQNQAEALDLDKTVLETVAEAAEDW--RIDDIKGLLGRCNFKAD 535
+ Y Q+ L D +V E + ++ + + +L +
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTD-SVREELLLGLKELDAGNEQAETVLKDLDL-YA 118
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---T 592
+ +R LSGG+K RLA ++ LL+ DEPT+ LD + E + E I E
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 593 VITVSHDRYFVKQIVNRVV 611
VI ++HD F+ ++ +RV+
Sbjct: 179 VIVITHDYEFLAKVCDRVL 197
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 8e-28
Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 32/218 (14%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y +D + +L I GEK AI+G +G GKSTLLKL++GL KP+ G +L
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 483 LGEHNVLPNYFEQNQ---------AEALDLDKTVLETVAEAAEDWRIDDIKGLL---GRC 530
L ++ N + + ++ E +A + ++I G
Sbjct: 532 LDGVDL--NDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAH 589
Query: 531 NFKADM---LDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
F ++ D V + LSGG++ RLA + ++ +L+LDE T+ LD ++ ++
Sbjct: 590 EFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649
Query: 584 EAISEYKG--TVITVSHDRYFVK---QIV----NRVVE 612
+ + + TVI ++H ++ +I+ ++VE
Sbjct: 650 QNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVE 687
|
Length = 709 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++ L + R + +L + RGE AIIGP+G GKSTLL+LI+GL +P GEVL+
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 485 EHNVLPNYFEQNQAE-----------ALDLDKTVLETVA------EAAEDWRIDDIKGL- 526
++ + AL TV E VA + I +I
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
L + D + LSGG K R+A + + LL+ DEPT LD + ++++ I
Sbjct: 121 LEAVGLRGA-EDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI 179
Query: 587 S----EYKGTVITVSHDRYFVKQIVNRVV 611
E T I V+HD I +R+
Sbjct: 180 RSLKKELGLTSIMVTHDLDTAFAIADRIA 208
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 115 bits (292), Expect = 3e-27
Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 52/253 (20%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+SKS+ ++ D+++ + G VG++G NGAGK+T ++I GQE+PDSG IK
Sbjct: 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT-IKI 383
Query: 158 KSNMKIAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+K+A++ Q + ++ ++TV EE I+G L+ ++ V + ++ R
Sbjct: 384 GETVKLAYVDQSRD-ALDPNKTVWEE----------ISGGLDIIK------VGNREIPSR 426
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
A V + F D + V S G + R+ L K L
Sbjct: 427 ---------------------AYVGRF----NFKGGDQQKKVGVLSGGERNRLHLAKTLK 461
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGV 333
Q ++LLLDEPTN LD++T+ LE L + P V+ISHDR FLD++ T I+ E G
Sbjct: 462 QGGNVLLLDEPTNDLDVETLRALEEAL--LEFPGCAVVISHDRWFLDRIATHILAFE-GD 518
Query: 334 SRT--YEGNYSQY 344
S+ +EGN+ +Y
Sbjct: 519 SQVEWFEGNFQEY 531
|
Length = 556 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 5e-27
Identities = 73/254 (28%), Positives = 112/254 (44%), Gaps = 74/254 (29%)
Query: 99 KLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+L+N+S SY L D++ +KKGE V +VG NG+GK+T LR++ G P SG V
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 155 ----IKAKSNM----KIAFLSQEFEVSMSR-TVREEFMSAF--------KEEMEIAGKLE 197
+ S K+ + Q + TV EE AF +EE+E E
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEV--AFGLENLGLPEEEIE-----E 113
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
RV++ALE V L+ L DR
Sbjct: 114 RVEEALE------------------------LVGLEGLR-----------------DRSP 132
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIIS 313
+ S G + R+++ +L DPD+LLLDEPT LD + +E L+ L + ++I++
Sbjct: 133 FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK-LKAEGKTIIIVT 191
Query: 314 HDRAFLDQLCTKIV 327
HD L +L +++
Sbjct: 192 HDLDLLLELADRVI 205
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 5e-27
Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 50/243 (20%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++EN++ SY VL+D++ V+KGE L+G NGAGK+T L+ I G +P SG +
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF 64
Query: 156 -----KAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
K + ++I ++ Q+ V S TV++ + + G R+ K + VD
Sbjct: 65 GKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK---GWFRRLNKKDKEKVD 121
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L+ + + DR + S G + R+
Sbjct: 122 ------EALERVGMEDLR---------------------------DRQIGELSGGQKQRV 148
Query: 269 SLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324
L + L Q+PDLLLLDEP +D + + L+ L ++ +++++HD +
Sbjct: 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE-LRQEGKTVLMVTHDLGLVMAYFD 207
Query: 325 KIV 327
+++
Sbjct: 208 RVI 210
|
Length = 254 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-27
Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 20/194 (10%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+++ I+ + + + NL++E+GE AI+GP+GCGKSTLL+LI GLEKP GEV
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 482 LLGEHNVL---PNY---FEQNQAEALDLDKTVLETVA------EAAEDWRIDDIKGLLGR 529
LL V P+ F Q +AL TVL+ VA ++ + K LL
Sbjct: 61 LLDGRPVTGPGPDIGYVF---QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLEL 117
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI--- 586
A D+ LSGG + R+A + + LL+LDEP LD ++E L++ +
Sbjct: 118 VGL-AGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL 176
Query: 587 -SEYKGTVITVSHD 599
E + TV+ V+HD
Sbjct: 177 WEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 7e-27
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 33/221 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + +KN+ + + NL IE GE ++GP+GCGKSTLL++I GLE+P GE+L
Sbjct: 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 483 LGEHNV--LP-----------NY-------FEQNQAEALDLDKTVLETVAEAAEDWRIDD 522
+ +V LP NY +N A L L V +A D R+ +
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG-----VPKAEIDKRVKE 116
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+ LLG +L+RK LSGG++ R+A + +V+ + +LDEP ++LD + ++
Sbjct: 117 VAKLLG----LEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172
Query: 583 EEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619
I + T I V+HD+ + +R+V + +Q
Sbjct: 173 RSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ 213
|
Length = 338 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 71/248 (28%), Positives = 117/248 (47%), Gaps = 37/248 (14%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ ++ + + DR++ + +L + RGE AI+G +G GKSTLL+LI+GL +P GE+L+
Sbjct: 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILI 67
Query: 484 -GEHNVLPNYFEQNQAEALDLDK---------------TVLETVA----EAAE--DWRID 521
GE + + ++ E ++ K TV E VA E + + I
Sbjct: 68 DGE-----DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR 122
Query: 522 DIKGL-LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
++ + L + D S LSGG + R+A + + LL LDEPT+ LD S
Sbjct: 123 ELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG 182
Query: 581 MLEEAISEYK----GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFSPFL 636
+++E I E TVI V+HD + I +RV + + G S P+
Sbjct: 183 VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLASDDPW- 240
Query: 637 LVPLRSYF 644
+R +F
Sbjct: 241 ---VRQFF 245
|
Length = 263 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-26
Identities = 133/565 (23%), Positives = 247/565 (43%), Gaps = 119/565 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVI 155
++++N++K + G VLK++++ +++GE +G++G +GAGK+ + ++ G + EP SG +I
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 156 KAKSNM-KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ K ++ + +V V + EE++ +++++ + + M
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLE--PEEVDFWNLSDKLRRRIRKRIAIM---- 114
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG-DRLVA--------------- 258
LQR DT+ V + + E+G+ + R V
Sbjct: 115 --------LQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166
Query: 259 -SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW----LEGYLGKQDVPMVIIS 313
S G + R+ L + L ++P L L DEPT LD T + LE + + MV+ S
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
H ++ L K + E G + EG + V A ++E + +++ E+E + +I
Sbjct: 227 HWPEVIEDLSDKAIWLENGEIKE-EGTPDEVV---AVFMEG--VSEVEKECEVEVGEPII 280
Query: 374 NRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFG 433
K+ + ++ + + +RG V + N+
Sbjct: 281 -----------------KVRNV----------SKRYISV---DRG----VVKAVDNVSL- 305
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE--VLLGEHNV--- 488
++ GE I+G +G GK+TL K+I G+ +P GE V +G+ V
Sbjct: 306 ------------EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT 353
Query: 489 LPNYFEQNQAE----------ALDLDKTVLETVAEAA------EDWRIDDIKGL--LGRC 530
P + +A+ L +TVL+ + EA E R+ + L +G
Sbjct: 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFD 413
Query: 531 NFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI--- 586
KA ++LD+ LS GE+ R+A + ++K +++LDEPT +D +K + +I
Sbjct: 414 EEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA 473
Query: 587 -SEYKGTVITVSHDRYFVKQIVNRV 610
E + T I VSHD FV + +R
Sbjct: 474 REEMEQTFIIVSHDMDFVLDVCDRA 498
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 66/252 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++EN+S Y G +L D+++ + KGE G++G NG+GK+T L+ +AG +P SG V
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLD 62
Query: 155 ---IKAKSNM----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
I + S K+A++ Q TV E V
Sbjct: 63 GKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE-------------------------LV 97
Query: 208 DDMDLMGRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L+GR L F ++ + V + + LG DR V S G +
Sbjct: 98 ----LLGRYPHLGLFGRPSKEDE--------EIVEEALELLG-LEHLADRPVDELSGGER 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
R+ + + L Q+ +LLLDEPT+HLD L+ + L ++ + +V++ HD
Sbjct: 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN---REKGLTVVMVLHD--- 198
Query: 319 LDQ---LCTKIV 327
L+ ++
Sbjct: 199 LNLAARYADHLI 210
|
Length = 258 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-25
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 45/202 (22%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +KN+ Y + + N +L IE GE A++GP+G GKSTLL+ I GLE+P G +L+
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 485 -----EHNVLPNYFEQN-----QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA 534
+ + Q AL TVLE +A
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-------------------- 100
Query: 535 DMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-- 591
LSGG++ R+A + + P LL LDEPT+ LD ++ + + +
Sbjct: 101 ---------LSGGQQQRVALARALAMDPDVLL-LDEPTSALDPITRREVRALLKSLQAQL 150
Query: 592 --TVITVSHDRYFVKQIVNRVV 611
TV+ V+HD ++ +RVV
Sbjct: 151 GITVVLVTHDLDEAARLADRVV 172
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 48/240 (20%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++E+++ SY G VL+DV++EVK GE + +VG NGAGK+T L+ I G +P SG++
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 156 --KAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEMEIAGKLERVQKAL-ESAVDDM 210
K +I ++ Q + +VR+ + + +L + KA + A++ +
Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV 120
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L +L R + L S G Q R+ L
Sbjct: 121 GL-------SELADR-----QIGEL-------------------------SGGQQQRVLL 143
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327
+ L+QDPDLLLLDEP +D T E + L + + + +++++HD + + +++
Sbjct: 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVL 203
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 56/181 (30%), Positives = 79/181 (43%), Gaps = 27/181 (14%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-LPNYFE 494
R+LF+ + T+ GE + GPNG GK+TLL+LI GL P G + L ++ P+ E
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE 73
Query: 495 QNQ----AEALDLDKTVLETVAEAAEDWRIDDIKGLLGR---------CNFK-ADMLDRK 540
A+ K L TVAE E W LG A +
Sbjct: 74 ACHYLGHRNAM---KPAL-TVAENLEFWA-----AFLGGEELDIAAALEAVGLAPLAHLP 124
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVS 597
LS G+K R+A + +V + +LDEPT LD + + E I + G VI +
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAAT 184
Query: 598 H 598
H
Sbjct: 185 H 185
|
Length = 207 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 32/201 (15%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEV 481
+++L Y D+ +L I +GE TA+IGP+GCGKSTLL+L+ L P GEV
Sbjct: 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV 62
Query: 482 LLGEHNVLPNYFEQNQAEALD------------LDKTVLETVAEAAEDWRIDDIKGL--- 526
LL ++ Y L ++ + VA I + L
Sbjct: 63 LLDGKDI---YDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119
Query: 527 ----LGRCNFKADMLDRKVSL-LSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKE 580
L + ++ DR +L LSGG++ RL + +P LL LDEPT+ LD S
Sbjct: 120 VEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLL-LDEPTSALDPISTA 178
Query: 581 MLEEAISEYKG--TVITVSHD 599
+EE I+E K T++ V+H+
Sbjct: 179 KIEELIAELKKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-25
Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 23/208 (11%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE- 485
+KN+ + D+++ + NLTIE+G+ AIIG +G GKSTLL +I LEK G+V L
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 486 -----HNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLG 528
++ + F + Q AL ++TV E + + ++ K L
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALE 120
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+ L +K+ LSGGE+ R+A + ++KP L++ DEPT LD +++ + + + E
Sbjct: 121 KVGLNLK-LKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 589 YKG---TVITVSHDRYFVKQIVNRVVEV 613
T+I V+HD V + +RV+E+
Sbjct: 180 LNDEGKTIIIVTHDPE-VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++++NL Y A +L IERGE I+G +G GKSTL +L+ GLEKP G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 481 VLLGEHNVLPNYFE-----------QNQAEALDLDKTVLETVAEAAEDWRIDDIKG---- 525
+LL + P Q+ +L+ +TV ++E R +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP---LRPHGLSKSQQR 120
Query: 526 ---LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEM 581
LL + LDR+ LSGG++ R+A + + +P LL+LDEPT+ LD S +
Sbjct: 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK-LLILDEPTSALD-VSVQA 178
Query: 582 -----LEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
L E E T + +SHD V+ + +R+
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIA 213
|
Length = 252 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 4e-25
Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 419 RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++++NL F Y D + + NLTI+ G+ TA++G +G GKSTLL L++G P
Sbjct: 315 NEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT 374
Query: 478 GGEVLLGEHNVL-----------------PNYFEQNQAEALDLDKTVL--ETVAEAAEDW 518
GE+ + ++ P F E + L + E + A +
Sbjct: 375 QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQA 434
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
+ + + ++ + LSGG+ RLA + ++ P++LL+LDEPT HLD +
Sbjct: 435 GLLEFVPKPDGLDT---VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491
Query: 579 KEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVK 614
++++ +A+ E TV+ ++H +R+V +
Sbjct: 492 EQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLD 528
|
Length = 559 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 5e-25
Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 67/255 (26%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK+Y G V LK V+ ++KGE V +VG +G+GK+T L I+ G + P SG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 154 VIKAKSNM--------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--E 197
V +++ I F+ Q F + T E + +AG E
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP----LLLAGVPKKE 116
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
R ++A E LL+ L R L+ S+L
Sbjct: 117 RRERAEE-----------LLERVGLGDR---------LNHYPSEL--------------- 141
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIIS 313
S G Q R+++ + L DP ++L DEPT +LD +T +E L + +V+++
Sbjct: 142 ---SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVT 198
Query: 314 HDRAFLDQLCTKIVE 328
HD L + +I+E
Sbjct: 199 HDP-ELAEYADRIIE 212
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 8e-25
Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 54/247 (21%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S+++I + D L + A L IE E+ ++G NG GKSTL+K++ GEVL
Sbjct: 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVL 54
Query: 483 LG------EHNVLPNYFEQN-------------------QAEAL------------DLDK 505
L E +++ +Q+ QAE L D +
Sbjct: 55 LDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSE 114
Query: 506 TVLETVAEAAED------WRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558
L +A+ E W++++ I +L + D +S LSGG + A + +
Sbjct: 115 KNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDA---ALSSLSGGWLRKAALGRAL 171
Query: 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618
V +L+LDEPTNHLDI + E LE + ++G++I +SHDR F++ + R+V++ L
Sbjct: 172 VSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKL 231
Query: 619 QDYAGDY 625
Y G+Y
Sbjct: 232 VSYPGNY 238
|
Length = 635 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-24
Identities = 72/225 (32%), Positives = 109/225 (48%), Gaps = 43/225 (19%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ- 495
R+L + A TI G+K ++G NGCGKSTLL L+ GG P ++
Sbjct: 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY------TFPGNWQLA 67
Query: 496 --NQAEALDLDKTVLETVAEAAEDWR------------------------IDDIKG---- 525
NQ E L + LE V + ++R +D I
Sbjct: 68 WVNQ-ETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIR 126
Query: 526 -----LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
LL F + L+R VS SGG + RL + ++ S LL+LDEPTNHLD+ +
Sbjct: 127 SRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVI 186
Query: 581 MLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
LE+ + Y+GT+I +SHDR F+ IV++++ ++ +L +Y G+Y
Sbjct: 187 WLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNY 231
|
Length = 638 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 52/232 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L+ +SK+Y V L D++ V+ GE + L+G +G GKTT LR+IAG E PDSG ++
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 158 KSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ I + Q++ + TV E AF ++ K E + E
Sbjct: 61 GRDVTGVPPERRNIGMVFQDYALFPHLTVAENI--AFGLKLRGVPKAEIRARVRELL--- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
L+ LL R S G Q R++
Sbjct: 116 -----ELVGLEGLLNRY------------------------------PHELSGGQQQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRA 317
L + L ++P LLLLDEP + LD E L L + + + ++HD+
Sbjct: 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 30/204 (14%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + I+N+ + D + +L I++GE ++GP+GCGK+TLL++I G E+P G
Sbjct: 1 MPKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 480 EVLLGEHNV--LPNY-------FEQNQAEALDLDKTVLETVA----------EAAEDWRI 520
E+LL ++ +P F Q+ AL TV E VA +A R+
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVF---QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
++ L+G DRK LSGG++ R+A + +V +L+LDEP + LD +E
Sbjct: 118 EEALELVG----LEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173
Query: 581 MLEEAISEYKG----TVITVSHDR 600
+ + + E + T + V+HD+
Sbjct: 174 QMRKELKELQRELGITFVYVTHDQ 197
|
Length = 352 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 5e-24
Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 39/194 (20%)
Query: 427 IKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++N+ F Y + + +IE GE AIIGP+G GKSTL +LI+GL +P G V L
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62
Query: 485 E---HNVLPNYFEQNQAEALDLDKTVLE-TVAEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
PN + L D + ++AE
Sbjct: 63 GADISQWDPNELGDHVG-YLPQDDELFSGSIAEN-------------------------- 95
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVS 597
+LSGG++ RL + + +LVLDEP +HLD+ + L +AI+ K T I ++
Sbjct: 96 --ILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA 153
Query: 598 HDRYFVKQIVNRVV 611
H R +R++
Sbjct: 154 H-RPETLASADRIL 166
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 7e-24
Identities = 69/220 (31%), Positives = 105/220 (47%), Gaps = 46/220 (20%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y ++ + +LTI GEK AIIG G GKSTLLKL+ GL KP G VL
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTV-----------------LETVAEAAEDWRIDDIKG 525
L ++ Q + DL + + + A A+D RI
Sbjct: 63 LDGTDI-------RQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAE 115
Query: 526 LLGRCNFKADM---LDRKVS----LLSGGEK-----ARLAFCKFMVKPSTLLVLDEPTNH 573
L G +F LD ++ LSGG++ AR + P LL LDEPT+
Sbjct: 116 LAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA----LLNDPPILL-LDEPTSA 170
Query: 574 LDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVV 611
+D+ S+E L+E + + G T+I ++H R + +V+R++
Sbjct: 171 MDMNSEERLKERLRQLLGDKTLIIITH-RPSLLDLVDRII 209
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 99.9 bits (250), Expect = 8e-24
Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 34/223 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KNL Y +A +L+IE+GE AI+GP+G GKSTLL ++ GL++P GE
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 481 VLLGEHNVLPNYFEQNQAEAL---------------DLDKTVLETVAEAAE------DWR 519
V + ++ E+ A DL T LE V R
Sbjct: 61 VRVDGTDIS-KLSEKELAAFRRRHIGFVFQSFNLLPDL--TALENVELPLLLAGVPKKER 117
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
+ + LL R D L+ S LSGG++ R+A + + +++ DEPT +LD +
Sbjct: 118 RERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176
Query: 580 EMLEEAI----SEYKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618
+ + E + E T++ V+HD + +R++E++ +
Sbjct: 177 KEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 99.8 bits (250), Expect = 1e-23
Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 40/241 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
++ ++K + G+ L DV++ V+ GE GL+G NGAGKTT +I+G P SG+V
Sbjct: 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61
Query: 155 --IKAKSNMKIAFLSQEFEVSMSRTVREEF--MSAFKEEMEIAGKLERVQKALESAVDDM 210
I +IA L + RT F F E+ + LE V A ++
Sbjct: 62 EDITGLPPHEIARL------GIGRT----FQIPRLF-PELTV---LENVMVAAQARTGSG 107
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L+ R E + +A+ + L+ + L AD DR S G Q R+ +
Sbjct: 108 LLLARARREEREARERAEEL-LERV---------GL---ADLADRPAGELSYGQQRRLEI 154
Query: 271 GKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKI 326
+ L DP LLLLDEP L+ + E + L ++ + ++++ HD + L ++
Sbjct: 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRE-LRERGITVLLVEHDMDVVMSLADRV 213
Query: 327 V 327
Sbjct: 214 T 214
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 1e-23
Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 28/216 (12%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
++NL +++ L N +L +ERG+ I+GP G GKS LL+ I G KP G++LL
Sbjct: 3 VENLSKDWKEFKLKN-VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK 61
Query: 487 NV--LP------NYFEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
++ LP +Y QN AL TV + +A + + ++ +I +LG
Sbjct: 62 DITNLPPEKRDISYVPQNY--ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLG- 118
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEA 585
+L+RK LSGGE+ R+A + +V +L+LDEP + LD+ +KE L++
Sbjct: 119 ---IDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKI 175
Query: 586 ISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
E+ TV+ V+HD + ++V + L
Sbjct: 176 RKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-23
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ + Y R + T+ GE+ A++GP+G GKSTLL L++G P G +
Sbjct: 320 PSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
Query: 482 LLGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRC-- 530
+ L + + Q L T+ E + A D +I+ L R
Sbjct: 380 AVNG-VPLADADADSWRDQIAWVPQHPFL-FAGTIAENIRLARPDASDAEIREALERAGL 437
Query: 531 -NFKAD---MLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
F A LD + + LSGG+ RLA + ++ + LL+LDEPT HLD ++ +
Sbjct: 438 DEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV 497
Query: 583 EEAISEYKG--TVITVSHDR 600
EA+ TV+ V+H
Sbjct: 498 LEALRALAQGRTVLLVTHRL 517
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 97.5 bits (244), Expect = 2e-23
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 72/235 (30%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
++EN+S Y G TVL D++ ++ GE VG++G NGAGK+T L+ +AG +P SG ++
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
++ S+S E+A K+ V +ALE LL
Sbjct: 61 KDLA----------SLSPK-------------ELARKIAYVPQALE-----------LLG 86
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
L R + L S G + R+ L + L Q+P
Sbjct: 87 LAHLADR-----PFNEL-------------------------SGGERQRVLLARALAQEP 116
Query: 279 DLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD--RAFLDQLCTKIV 327
+LLLDEPT+HLD+ + +E L ++ +V++ HD A + +++
Sbjct: 117 PILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA--RYADRVI 169
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 2e-23
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 54/205 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++LEN++K Y L V+ + G GL+G NGAGKTT +RI+A P SG +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 155 -IKAKSNM-----KIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLERVQKALESA 206
+I +L QEF V + TVRE ++++ K + RV + LE
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLE-- 116
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
VNL D + + S S G +
Sbjct: 117 ----------------------LVNL-----------------GDRAKKKIGSLSGGMRR 137
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+ + + L+ DP +L++DEPT LD
Sbjct: 138 RVGIAQALVGDPSILIVDEPTAGLD 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-23
Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 32/233 (13%)
Query: 392 LERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI--KNLEFGYED-RLLFNRANLTIE 448
ER+ E P P G G T+ ++L GY + + +L +
Sbjct: 304 AERIVEVLDAAGPVAEGS----APAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLP 359
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL----------GEHNVLPNYFEQNQA 498
GE+ AI+GP+G GKSTLL + GL P GEV L E + Q+
Sbjct: 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQD-- 417
Query: 499 EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF------KADMLDRKV----SLLSGGE 548
A D TV E + A D +++ L R D LD + + LSGGE
Sbjct: 418 -AHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGE 476
Query: 549 KARLAFCKFMVKPSTLLVLDEPTNHLDI-PSKEMLEEAISEYKG-TVITVSHD 599
+ RLA + ++ + +L+LDEPT HLD + E+LE+ ++ G TV+ ++H
Sbjct: 477 RQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 6e-23
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 35/234 (14%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++ +++KSY ++DV++E ++GE GL+G NGAGKTT LR+IA PDSG V
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ V VR + + E + +L +A +++ RL
Sbjct: 62 DGVDT----------VRDPSFVRRK-IGVLFGERGLYARL--------TARENLKYFARL 102
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
L RK + A++++L L + DR V FS+G + ++++ + L+
Sbjct: 103 NG----LSRK-------EIKARIAELSKRLQL-LEYLDRRVGEFSTGMKQKVAIARALVH 150
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVII---SHDRAFLDQLCTKIV 327
DP +L+LDEPT+ LD+ T ++ + + SH ++ LC +++
Sbjct: 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI 204
|
Length = 245 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 8e-23
Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 58/247 (23%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ ++L+N+ KS+ VLKDV +++ GE V L+G +G GK+T LR+IAG EEP SG ++
Sbjct: 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 156 --------KAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKA-LE 204
IA + Q + + M TV E + KL V KA ++
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHM--TVY--------ENIAFGLKLRGVPKAEID 111
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
V ++ AK+ L L +R S G
Sbjct: 112 KRVKEV--------------------------AKLLGLEHLL-------NRKPLQLSGGQ 138
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD----VPMVIISHDRAFLD 320
+ R++L + L++ P + LLDEP ++LD + + K + ++HD+
Sbjct: 139 RQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAM 198
Query: 321 QLCTKIV 327
L +IV
Sbjct: 199 TLADRIV 205
|
Length = 338 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 8e-23
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 53/250 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ N+ K + L D++ ++K GE V L+G +GAGK+T LRIIAG E PD+G +
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 158 KSNM-----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ K+ F+ Q + + TV + K E + E + E
Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEE-- 120
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
LL V L+ L DR A S G +
Sbjct: 121 ---------LLRL----------VQLEGL-----------------ADRYPAQLSGGQRQ 144
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD---LDTIE-WLEGYLGKQDVPMVIISHDRAFLDQL 322
R++L + L +P +LLLDEP LD + WL + V V ++HD+ +L
Sbjct: 145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL 204
Query: 323 CTKIVETEMG 332
++V G
Sbjct: 205 ADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 9e-23
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 33/206 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPN----YFEQN- 496
+ I +GE + GP+G GKSTLLKLI G E+P G++L+ H++ L + +
Sbjct: 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81
Query: 497 ----QAEALDLDKTVLETVAEAAE-------DWRID-----DIKGLLGRCNFKADMLDRK 540
Q L D+TV E VA + R D+ GL KA L
Sbjct: 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH----KARALP-- 135
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLE--EAISEYKGTVITVS 597
S LSGGE+ R+A + +V +L+ DEPT +LD S E++ E I+ TV+ +
Sbjct: 136 -SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMAT 194
Query: 598 HDRYFVKQIVNRVVEVKGSNLQDYAG 623
HD V ++ +RV+ ++ L
Sbjct: 195 HDLELVNRMRHRVLALEDGRLVRDES 220
|
Length = 223 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 9e-23
Identities = 46/192 (23%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 425 VTIKNLE--FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ I+NL + + + +L + +GE ++G NG GK+T LK++ G +P G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 483 LGEHNVL--PNYFEQN-----QAEALDLDKTVLETVAEAA------EDWRIDDIKGLLGR 529
+ +++ Q+ Q +AL + TV E + A + ++++ LL
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRV 120
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589
+++ LSGG K +L+ ++ ++L+LDEPT+ LD S+ + + I E
Sbjct: 121 LGLTDKA-NKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV 179
Query: 590 KG--TVITVSHD 599
+ ++I +H
Sbjct: 180 RKGRSIILTTHS 191
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 2e-22
Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 61/254 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++++N+SKS+ VLK ++ V+KGE V ++G +G+GK+T LR + G EEPDSG++
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62
Query: 155 ---IKAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ K ++ K+ + Q+F + TV E A KL + +A E A
Sbjct: 63 GEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA----PVKVKKLSK-AEAREKA 117
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
++ LL++ L KA A P A S G Q
Sbjct: 118 LE-------LLEKVGLAD-KADA-------------YP-------------AQLSGGQQQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFL 319
R+++ + L DP ++L DEPT+ LD LD ++ L ++ + M+I++H+ F
Sbjct: 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK----DLAEEGMTMIIVTHEMGFA 199
Query: 320 DQLCTKIVETEMGV 333
++ +++ + G
Sbjct: 200 REVADRVIFMDQGK 213
|
Length = 240 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 2e-22
Identities = 65/210 (30%), Positives = 94/210 (44%), Gaps = 54/210 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ ++N+ Y A +L++E GE A++GP+GCGKSTLL++I GLE+P GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 481 VLLG----------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524
VL+ + +LP TVL+ VA E +
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPW-------------LTVLDNVALGLELQGVPK-A 106
Query: 525 GLLGRCNFKADMLDRKVSL----------LSGGEKARLAFCK-FMVKPSTLLVLDEPTNH 573
R A+ L V L LSGG + R+A + V P LL LDEP +
Sbjct: 107 EARER----AEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL-LDEPFSA 161
Query: 574 LDIPSKEMLEEAI----SEYKGTVITVSHD 599
LD ++E L+E + E TV+ V+HD
Sbjct: 162 LDALTREQLQEELLDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 2e-22
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 25/195 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + + NL I GE ++GP+GCGK+T L++I GLE+P G + +G
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 485 EHNV--LPNYFEQN-----QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLG 528
+V LP +++ Q AL TV + +A + D R+ ++ LL
Sbjct: 61 GRDVTDLPPK-DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQ 119
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EMLEEAIS 587
+LDRK LSGG++ R+A + +V+ + ++DEP ++LD + +M E
Sbjct: 120 ----IEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKR 175
Query: 588 ---EYKGTVITVSHD 599
T I V+HD
Sbjct: 176 LQQRLGTTTIYVTHD 190
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 3e-22
Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 64/258 (24%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK Y V LKDV E++ GE V +VG +G+GK+T L ++ G ++P SG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 154 VI-----------KAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL-ER 198
V+ K + + KI F+ Q F + TV E + IAGK R
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP----LLIAGKSAGR 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++A E LL+ L R + +
Sbjct: 118 RKRAAEE----------LLEVLGLEDRLL--------------------------KKKPS 141
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
S G Q R+++ + L+ +P ++L DEPT +LD T +E L ++ +++++H
Sbjct: 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201
Query: 315 DRAFLDQLCTKIVETEMG 332
D +++E + G
Sbjct: 202 DPELAKY-ADRVIELKDG 218
|
Length = 226 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-22
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 24/219 (10%)
Query: 410 MKIRFP-ERGRSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTL 466
++ FP E+ + + ++N+ F Y NLT+ +GEK AI+G +G GKSTL
Sbjct: 321 PEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTL 380
Query: 467 LKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD--------LDKTVLETVAEAAED- 517
L+L+ G P+ G + L + + EQ E + T+ + + A D
Sbjct: 381 LQLLAGAWDPQQGSITLNGVEI-ASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439
Query: 518 -----WRIDDIKGLLGRCNFKADMLDRKVSL----LSGGEKARLAFCKFMVKPSTLLVLD 568
W GL D L+ + LSGGE+ RLA + ++ + L +LD
Sbjct: 440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLD 499
Query: 569 EPTNHLD-IPSKEMLEEAISEYKG-TVITVSHDRYFVKQ 605
EPT LD I +++L +G T++ V+H +++
Sbjct: 500 EPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538
|
Length = 573 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 3e-22
Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 27/178 (15%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++I N+ F Y +++ + +L +++GEK A++G +G GKSTLL+L+ G KP+ GE+
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
L V DL+K + ++ + + + L F + +
Sbjct: 61 LDGVPV------------SDLEKALSSLIS-------VLNQRPYL----FDTTLRNNLGR 97
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAISEYKG-TVITVSH 598
SGGE+ RLA + +++ + +++LDEPT LD I +++L K T+I ++H
Sbjct: 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH 155
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 3e-22
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 53/201 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN+SK Y V+ V+ VK+GE VGL+G NGAGKTT +I G +PDSG +
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL-ERVQKALES 205
+ ++ + I +L QE + TV E ++ +EI G + ++ LE
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV----LEIRGLSKKEREEKLEE 116
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
LL+EF + + K +S S G +
Sbjct: 117 ----------LLEEFHI--------------THLRK-------------SKASSLSGGER 139
Query: 266 MRMSLGKILLQDPDLLLLDEP 286
R+ + + L +P LLLDEP
Sbjct: 140 RRVEIARALATNPKFLLLDEP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 6e-22
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 35/198 (17%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + ++K + K V + V++ VK GE GL+G NGAGKTT LR++AG EPD+G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
V V+E + + + L +A ++++
Sbjct: 62 A----------------TVDGFDVVKEPA--EARRRLGFVSDSTGLYDRL-TARENLEYF 102
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
L + D L A++ +L LG + DR V FS+G + ++++ +
Sbjct: 103 AGL-----------YGLKGDELTARLEELADRLGM-EELLDRRVGGFSTGMRQKVAIARA 150
Query: 274 LLQDPDLLLLDEPTNHLD 291
L+ DP +LLLDEPT LD
Sbjct: 151 LVHDPPVLLLDEPTTGLD 168
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 1e-21
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ N+SK Y T L D++ V+KGE GL+G NGAGKTT ++II G +PDSG +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVRE 180
+ +I +L +E + + TVRE
Sbjct: 61 GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE 92
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 1e-21
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 33/210 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + ++ F Y + R +LT+ GE AI+GP+G GKSTLL LI G E P GE+L+
Sbjct: 2 LALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59
Query: 485 --EHNVLPNY-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGL 526
+H P F++N L TV + + A + +++
Sbjct: 60 GVDHTASPPAERPVSMLFQENN---LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQ 116
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS--KEMLE- 583
+G A L R LSGG++ R+A + +V+ +L+LDEP + LD P+ EML
Sbjct: 117 VGL----AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD-PALRAEMLAL 171
Query: 584 --EAISEYKGTVITVSHDRYFVKQIVNRVV 611
+ E K T++ V+H +I +RVV
Sbjct: 172 VSQLCDERKMTLLMVTHHPEDAARIADRVV 201
|
Length = 231 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 2e-21
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 48/202 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+LEN++K + VT L D+ ++ GE V L+G +G GKTT LR+IAG EEP SG +
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ IA + Q + + TV + AF ++ K E ++ E A
Sbjct: 61 GRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI--AFGLKLRKVPKDEIDERVREVA--- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
LL LL RK + + S G + R++
Sbjct: 116 -----ELLQIEHLLDRKPKQL------------------------------SGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
LG+ ++++P + L+DEP ++LD
Sbjct: 141 LGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 2e-21
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 35/170 (20%)
Query: 426 TIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL GY + ++LF +LT+ GE A++G NG GK+TLLK IMGL PR G +
Sbjct: 2 EVENLNAGYGKSQILFG-VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 485 EHNV---------------LPNYFEQNQAEALDLDKTVLE-------TVAEAAEDWRIDD 522
++ +P + + + TV E A R++
Sbjct: 61 GRDITGLPPHERARAGIGYVP------EGRRIFPELTVEENLLLGAYARRRAKRKARLER 114
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT 571
+ L R + + LSGGE+ LA + M +P LL+LDEP+
Sbjct: 115 VYELFPRL---KERRKQLAGTLSGGEQQMLAIARALMSRPK-LLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 2e-21
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 30/188 (15%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------ 490
RL+ + ++T G T ++GPNG GKSTLL+L+ G +P G V L ++
Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 491 ----NYFEQNQAEALDLDKTVLETVA------------EAAEDWRIDDIKGLLGRCNFKA 534
EQ+ A+ L TV + VA ++ D + D L R +
Sbjct: 74 ARRVALVEQDSDTAVPL--TVRDVVALGRIPHRSLWAGDSPHDAAVVD--RALARTEL-S 128
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--- 591
+ DR +S LSGGE+ R+ + + + LL+LDEPTNHLD+ ++ + E
Sbjct: 129 HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188
Query: 592 TVITVSHD 599
TV+ HD
Sbjct: 189 TVVAALHD 196
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 55/210 (26%), Positives = 77/210 (36%), Gaps = 52/210 (24%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE- 485
KN+ + + + + GE AI+GPNG GK+TLL L+ G P G+V LLG
Sbjct: 35 KNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRR 94
Query: 486 ---------------------HN-----------VLPNYFEQNQAEALDLDKTVLETVAE 513
H VL +F DL L
Sbjct: 95 FGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQW 154
Query: 514 AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
E + DR LS GE+ R+ + +VK LL+LDEP
Sbjct: 155 LLELLGAKHLA-------------DRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201
Query: 574 LDIPSKEML-----EEAISEYKGTVITVSH 598
LD+ ++E L E A S ++ V+H
Sbjct: 202 LDLIAREQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 2e-21
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 423 SVVTIKNLEFGYEDRLLFNRA---------NLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
++ +KNL+ + F + + +I+ GE ++G +GCGKSTL +LI+GL
Sbjct: 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
Query: 474 EKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK 533
E+P GE+ FE L ++ R + + LL +
Sbjct: 63 EEPTSGEI----------LFEGKDITKLSKEE-------------RRERVLELLEKVGLP 99
Query: 534 ADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISE 588
+ L R LSGG++ R+ + + P L+V DEP + LD+ + +L++ E
Sbjct: 100 EEFLYRYPHELSGGQRQRIGIARALALNPK-LIVADEPVSALDVSVQAQILNLLKDLQEE 158
Query: 589 YKGTVITVSHDRYFVKQIVNRVV 611
T + +SHD V+ I +R+
Sbjct: 159 LGLTYLFISHDLSVVRYISDRIA 181
|
Length = 268 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 3e-21
Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 53/229 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++E +SKS+ GV VL+D+ V+KGE V ++G +G GK+T LR+IAG E+P SG V
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63
Query: 155 --IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--ERVQKALESAVDDM 210
I ++ QE + TV + +E+ GK E ++A E
Sbjct: 64 GRPVTGPGPDIGYVFQEDALLPWLTVLDNVALG----LELRGKSKAEARERAKE------ 113
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
LL+ L A D+ S G + R+++
Sbjct: 114 -----LLELVGL---------------------------AGFEDKYPHQLSGGMRQRVAI 141
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHD 315
+ L P LLLLDEP LD T E L + +++++HD
Sbjct: 142 ARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 92.9 bits (232), Expect = 3e-21
Identities = 58/201 (28%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY--------- 492
+ ++ GE +IGPNG GK+TL LI G +P G VL ++ LP +
Sbjct: 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79
Query: 493 -FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA---------------DM 536
F Q +L TVLE V AA+ + R + D+
Sbjct: 80 TF-QIPRLFPEL--TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL 136
Query: 537 LDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT---NHLDIPSKEMLE--EAISEYK 590
DR LS G++ RL + P LL+LDEP N + E+ E + E
Sbjct: 137 ADRPAGELSYGQQRRLEIARALATDPK-LLLLDEPAAGLNPEETE--ELAELIRELRERG 193
Query: 591 GTVITVSHDRYFVKQIVNRVV 611
TV+ V HD V + +RV
Sbjct: 194 ITVLLVEHDMDVVMSLADRVT 214
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 3e-21
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 38/200 (19%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL- 483
+ +NL +R LF+ + T+ GE I GPNG GK+TLL+++ GL +P GEV
Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62
Query: 484 GEH-NVLPNYFEQN-----QAEALDLDKTVLE---------------TVAEAAEDWRIDD 522
GE + + Q + + T LE T+ EA
Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQV---- 118
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
GL G D V LS G++ R+A + + P+ L +LDEP LD +L
Sbjct: 119 --GLAGL-------EDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169
Query: 583 EEAISEY---KGTVITVSHD 599
++ + G V+ +H
Sbjct: 170 TALMAAHAAQGGIVLLTTHQ 189
|
Length = 209 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 4e-21
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 23/207 (11%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+K + + D + N +L++ GE AI GP+GCGKSTLLK++ L P G +L
Sbjct: 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG 64
Query: 486 HNVL---PNYFEQNQAEALDLDKTVLETVAEAAED-----WRI-------DDIKGLLGRC 530
+V P + Q + +TV ED W+I LL R
Sbjct: 65 EDVSTLKPEAYRQQVSYCAQTPALFGDTV----EDNLIFPWQIRNRRPDRAAALDLLARF 120
Query: 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY- 589
+L + ++ LSGGEK R+A + + +L+LDE T+ LD +K +EE I Y
Sbjct: 121 ALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV 180
Query: 590 ---KGTVITVSHDRYFVKQIVNRVVEV 613
V+ ++HD+ + ++V+ +
Sbjct: 181 REQNVAVLWITHDKDQAIRHADKVITL 207
|
Length = 223 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 5e-21
Identities = 59/304 (19%), Positives = 114/304 (37%), Gaps = 77/304 (25%)
Query: 63 QSDVESLFSS----------SADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--- 109
E + S+ +A + + G + + N+SK Y
Sbjct: 236 TGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKG 295
Query: 110 --------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------ 155
V + DV++++++GE +GLVG +G+GK+T RI+AG P SG++I
Sbjct: 296 LFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ + +++ F ++ TV +
Sbjct: 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI-------------------------- 389
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L L + + A+V++L+ +G + DR S G + R
Sbjct: 390 ----LAEPLRIHGGGSGAERR--------ARVAELLELVGLPPEFLDRYPHELSGGQRQR 437
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+++ + L +P LL+LDEP + LD + L+ + + + ISHD A + +
Sbjct: 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA 497
Query: 324 TKIV 327
++
Sbjct: 498 DRVA 501
|
Length = 539 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 5e-21
Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 64/244 (26%)
Query: 100 LENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ENIS SYK T +L D++ ++ GE + L G NGAGKTT +I+AG + SG++
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 155 --IKAKSNMK-IAFLSQE-----FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
IKAK K I ++ Q+ F S VREE + K E+ E+ +
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQLFTDS----VREELLLGLK---ELDAGNEQAET----- 109
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+L + DL K +R S S G +
Sbjct: 110 ---------VLKDLDLYALK---------------------------ERHPLSLSGGQKQ 133
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
R+++ LL DLL+ DEPT+ LD ++ + L L Q +++I+HD FL ++C
Sbjct: 134 RLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVC 193
Query: 324 TKIV 327
+++
Sbjct: 194 DRVL 197
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 5e-21
Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 29/211 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ IKNL + D + +LT+++GE IIGP+G GKSTLL+ I LE+P G +++
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 485 EHNVLPNYFEQN----------QAEALDLDKTVLETVAEA-------AEDWRIDDIKGLL 527
+ + N Q L TVLE + A ++ + LL
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELL 120
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEE-- 584
+ AD D + LSGG++ R+A + + P +L DEPT+ LD P E++ E
Sbjct: 121 EKVGL-ADKADAYPAQLSGGQQQRVAIARALAMNPKVML-FDEPTSALD-P--ELVGEVL 175
Query: 585 ----AISEYKGTVITVSHDRYFVKQIVNRVV 611
++E T++ V+H+ F +++ +RV+
Sbjct: 176 DVMKDLAEEGMTMVVVTHEMGFAREVADRVI 206
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 6e-21
Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 16/200 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +L Y + + + +L +++GE +GPNG GK+T +K+I+GL KP GE+
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60
Query: 485 EHNVLPNYFEQNQAEALDLDK-------TVLETVAEAAEDWRIDD--IKGLLGRCNFKAD 535
+ N + AL ++ T E + A I I +L K
Sbjct: 61 GKSYQKNIEALRRIGAL-IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS 119
Query: 536 MLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLD-IPSKEMLE--EAISEYKG 591
+KV S G K RL + P LL+LDEPTN LD KE+ E ++ +
Sbjct: 120 A-KKKVKGFSLGMKQRLGIALALLGNPD-LLILDEPTNGLDPDGIKELRELILSLRDQGI 177
Query: 592 TVITVSHDRYFVKQIVNRVV 611
TV+ SH ++++ +R+
Sbjct: 178 TVLISSHLLSEIQKVADRIG 197
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 6e-21
Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 44/242 (18%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + N+S Y G L +V+ E+++GE +G+VG +G+GK+T R++AG E+P SG+
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ + + ++ K ++ V + S+++ +
Sbjct: 64 I----------------------LLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTV 101
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
GR+L E + L ++++L+ ++G DR S G + R+++ +
Sbjct: 102 GRILSE------PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155
Query: 274 LLQDPDLLLLDEPTNHLDLDT--------IEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L+ +P LL+LDEPT+ LD+ +E + + + ISHD A ++ +C +
Sbjct: 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER----GLTYLFISHDLALVEHMCDR 211
Query: 326 IV 327
I
Sbjct: 212 IA 213
|
Length = 252 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 6e-21
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 45/239 (18%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++ N++K+YK + D++ V KGE GL+G NGAGKTT L+++ G+ P SG
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
++ + S +F + F +E+ + + + R
Sbjct: 61 INGYSI----RTDRKAARQSLGYCPQFDALF-DEL--------------TVREHLRFYAR 101
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
L + + + +V L+ LG T D ++ + S G + ++SL L+
Sbjct: 102 L-----------KGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALI 149
Query: 276 QDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
P +LLLDEPT+ LD D I + ++ +++ +H + LC +I
Sbjct: 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEV-----RKGRSIILTTHSMDEAEALCDRIA 203
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 6e-21
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 29/202 (14%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PN 491
YE L +L + GE AI+GP+G GKSTLL LI G +P G + + + +
Sbjct: 8 YEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP 67
Query: 492 Y-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGRCNFKAD 535
Y F++N L TV + + A + ++ D +G AD
Sbjct: 68 YQRPVSMLFQENN---LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVG----IAD 120
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEML---EEAISEYKG 591
LDR LSGG++ R+A + +V+P+ +L+LDEP + LD + +EML ++ SE +
Sbjct: 121 YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR 180
Query: 592 TVITVSHDRYFVKQIVNRVVEV 613
T++ V+H + I +++ V
Sbjct: 181 TLLMVTHHLSDARAIASQIAVV 202
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 7e-21
Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 66/256 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++++N+S S+ V L DV++ +KKGE +GLVG +G+GK+T R I G +P SG+
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 154 VI---KAKSNM----------KIAFLSQEFEVSMS-----RTVREEFMSAFKEEMEIAGK 195
+I K + +I + Q+ MS T+ E E + I GK
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQD---PMSSLNPRMTIGE----QIAEPLRIHGK 114
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
L + + E V L+ +G + +R
Sbjct: 115 LSKKEARKE---------------------------------AVLLLLVGVGLPEEVLNR 141
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVI 311
S G + R+++ + L +P LL+ DEPT+ LD+ ++ L+ + + ++
Sbjct: 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLF 201
Query: 312 ISHDRAFLDQLCTKIV 327
I+HD + ++ ++
Sbjct: 202 ITHDLGVVAKIADRVA 217
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 1e-20
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++LEN+SK+Y G +LKD++ + G+++GLVG NGAGK+T L++IAG+ EPD G +
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTW 59
Query: 158 KSNMKIAFLSQ 168
S +KI + Q
Sbjct: 60 GSTVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 1e-20
Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 66/253 (26%)
Query: 98 VKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
++LEN+SK++ VT L DV+ E+ KGE G++G +GAGK+T LR+I E P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 153 NV------IKAKSNM-------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLE 197
+V + A S KI + Q F + SRTV E +E+AG K E
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP----LELAGVPKAE 117
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
Q+ E LL+ L +D DR
Sbjct: 118 IKQRVAE-----------LLELVGL---------------------------SDKADRYP 139
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIIS 313
A S G + R+++ + L +P +LL DE T+ LD +T +E L+ + + +V+I+
Sbjct: 140 AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT 199
Query: 314 HDRAFLDQLCTKI 326
H+ + ++C ++
Sbjct: 200 HEMEVVKRICDRV 212
|
Length = 339 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 1e-20
Identities = 69/238 (28%), Positives = 108/238 (45%), Gaps = 49/238 (20%)
Query: 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
LKD+++E+ KGE+VG++G NGAGK+T L++IAG +P SG V K K+A L
Sbjct: 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV---KVTGKVAPL 93
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
E+ F E+ + +++ L G +L L RK
Sbjct: 94 ---IELGAG----------FDPEL--------------TGRENIYLRGLILG----LTRK 122
Query: 227 AQAVNLDTLDAKVSKLM--PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+D KV +++ ELG D D+ V ++SSG R++ +PD+LLLD
Sbjct: 123 E-------IDEKVDEIIEFAELG---DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD 172
Query: 285 EPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
E D E L +++ +V++SHD + Q C + + E G R
Sbjct: 173 EVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-20
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ Y + + +L I+ GE ++GP+GCGK+TLL+LI G E P GE+LL
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 485 E---HNVLPNYFEQN---QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
N+ P+ N Q AL TV E +A +A R+ + L+
Sbjct: 61 GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL 120
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLEE--AI 586
+ +RK S LSGG++ R+A + +V +L+LDEP LD+ K+M E +
Sbjct: 121 EGYA----NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL 176
Query: 587 SEYKG-TVITVSHD 599
+ G T + V+HD
Sbjct: 177 QKELGITFVFVTHD 190
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 67/251 (26%), Positives = 99/251 (39%), Gaps = 47/251 (18%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
++ +SK + G+T + DV+ EV+ GE VGL+G NGAGKTT +I G +P SG V
Sbjct: 6 EVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG 65
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSA--FKEEMEIAGKLERVQKALES 205
I +IA L Q + TV E + + R +K
Sbjct: 66 RDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE 125
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A + LL+ L + DR + S G Q
Sbjct: 126 A---RERARELLEFVGLGELA---------------------------DRPAGNLSYGQQ 155
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321
R+ + + L P LLLLDEP L+ + E L + + V +++I HD +
Sbjct: 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMG 215
Query: 322 LCTKIVETEMG 332
L +IV G
Sbjct: 216 LADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 2e-20
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 5/89 (5%)
Query: 327 VETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRA 385
+E E G TY+GNYSQY+ +K +E Q A+EKQQ+EI++ ++ I+R A A+ + +A
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQA 60
Query: 386 SSAEKKLERLQEEEQIEKPFQRKQMKIRF 414
S K LE++ E+IEKP K+ KIRF
Sbjct: 61 QSRIKALEKM---ERIEKP-VEKKPKIRF 85
|
This domain is related to pfam00005. Length = 85 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 2e-20
Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L ISKS+ GV L V+ V+ GE L+G NGAGK+T ++I++G PDSG
Sbjct: 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----- 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD-----L 212
+I + S R + AG + V + L S V ++
Sbjct: 64 ----EILIDGKPVAFSSPR------------DALAAG-IATVHQEL-SLVPNLSVAENIF 105
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM-SLG 271
+GR R+ ++ + + +L+ LG D D LV S Q +M +
Sbjct: 106 LGR------EPTRRFGLIDRKAMRRRARELLARLGLD-IDPDTLVGDLSIA-QRQMVEIA 157
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH--DRAFLDQLCTKI 326
+ L D +L+LDEPT L + E L L Q V ++ ISH D F ++ +I
Sbjct: 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF--EIADRI 215
Query: 327 V 327
Sbjct: 216 T 216
|
Length = 500 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 65/209 (31%), Positives = 99/209 (47%), Gaps = 39/209 (18%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +NL GY + + N +L++ G+ TA+IGPNGCGKSTLLK L P+ G V LG
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 485 EHNVLPNYFEQNQAEALDL---------DKTVLETVAEAAEDWRIDDIKGLLGRCNFK-- 533
+ + + A L L TV E VA W L GR + +
Sbjct: 63 D-KPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWL-----SLWGRLSAEDN 116
Query: 534 ------------ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-- 579
+ DR+++ LSGG++ R + + + +++LDEPT +LDI +
Sbjct: 117 ARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVE 176
Query: 580 --EMLEEAISEYKGTVITVSHD-----RY 601
++ E ++ K TV+TV HD RY
Sbjct: 177 LMRLMRELNTQGK-TVVTVLHDLNQASRY 204
|
Length = 255 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 44/222 (19%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ IKNL + D+ + +L++E+GE IIGP+G GKSTLL+ + GLE+P G +
Sbjct: 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 483 LGEHNVLPNYFEQNQAEALDLD-------------KTVLETVAEA-----------AEDW 518
+ +V L TVLE V A A +
Sbjct: 61 VDGEDVGDK----KDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK 116
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIP 577
++ LL + AD D + LSGG++ R+A + + P +L DEPT+ LD P
Sbjct: 117 ALE----LLEKVGL-ADKADAYPAQLSGGQQQRVAIARALAMDPKVML-FDEPTSALD-P 169
Query: 578 SKEMLEE------AISEYKGTVITVSHDRYFVKQIVNRVVEV 613
E++ E ++E T+I V+H+ F +++ +RV+ +
Sbjct: 170 --ELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFM 209
|
Length = 240 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 3e-20
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
G++L +S S G ++ V G GL+G NG+GK+T LR++AG PD+G V
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
A ++ +SR R ++ +++ + A L V D+ +GR
Sbjct: 61 AGVDLH----------GLSRRARARRVALVEQDSDTAVPL---------TVRDVVALGR- 100
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ R A + A V + + + DR +++ S G + R+ + + L Q
Sbjct: 101 -----IPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQ 154
Query: 277 DPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
+P LLLLDEPTNHLD L+T+ + V +V HD C +V
Sbjct: 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATG-VTVVAALHDLNLAASYCDHVV 208
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 33/223 (14%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+S G +L D++W+V GE +VG NGAGKTT L ++ G+ P SG+V
Sbjct: 34 LKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT---- 89
Query: 160 NMKIAFLSQEF-EVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
L + F + +R+ +S E+ + + + L G
Sbjct: 90 -----LLGRRFGKGETIFELRKRIGLVS-----SELHERFRVRETVRDVV-----LSG-F 133
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ Q A +L L+ LG DR S S G Q R+ + + L++
Sbjct: 134 FASIGIYQEDLTAEDLA----AAQWLLELLGAKHLA-DRPFGSLSQGEQRRVLIARALVK 188
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP-----MVIISH 314
DP+LL+LDEP LDL E L L + ++ ++H
Sbjct: 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 3e-20
Identities = 61/206 (29%), Positives = 85/206 (41%), Gaps = 37/206 (17%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ +NL R L + +LT+ GE AI+GPNG GKSTLL+ + G P GEV L
Sbjct: 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61
Query: 484 GEHN--------------VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG--LL 527
VLP Q +L TV E VA + + L+
Sbjct: 62 NGRPLADWSPAELARRRAVLP------QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALV 115
Query: 528 GRCNFKADML---DRKVSLLSGGEKARLAFCKFMV-------KPSTLLVLDEPTNHLDIP 577
+ D+ R LSGGE+ R+ + + P LL LDEPT+ LD+
Sbjct: 116 AAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL-LDEPTSALDLA 174
Query: 578 SK----EMLEEAISEYKGTVITVSHD 599
+ + + E VI V HD
Sbjct: 175 HQHHVLRLARQLAHERGLAVIVVLHD 200
|
Length = 258 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 4e-20
Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 26/234 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I N++ + + +L I+ GE A++GP+G GKSTLL++I GLE P G + L
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 485 EHNVLPNYFEQNQAE----------ALDLDKTVLETVA-------EAAEDWRIDD-IKGL 526
VL + + AL TV + +A E + I ++ L
Sbjct: 63 -GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEEL 121
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIP-SKEM--- 581
L + DR + LSGG++ R+A + + V+P LL LDEP LD KE+
Sbjct: 122 LRLVQL-EGLADRYPAQLSGGQRQRVALARALAVEPKVLL-LDEPFGALDAKVRKELRRW 179
Query: 582 LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFSPF 635
L + T + V+HD+ ++ +RVV + ++ V S F
Sbjct: 180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 4e-20
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 55/232 (23%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+++ N+SK+Y G VT L+D++ V++GE V LVG +G GK+T LRIIAG E P SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 154 VI-----KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
V+ ++ Q+ + TV + A E++ K E ++A E
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNV--ALGLELQGVPKAEARERAEE---- 114
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSSGWQMR 267
LL+ L + P +L S G + R
Sbjct: 115 -------LLELVGL--------------SGFENAYPHQL--------------SGGMRQR 139
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
++L + L DPD+LLLDEP + LD E L + +++++HD
Sbjct: 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 4e-20
Identities = 68/247 (27%), Positives = 106/247 (42%), Gaps = 52/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ NISK + L DV EV G V L+G +G+GK+T LRIIAG E+PDSG +
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 156 -KAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ + + KI F+ Q + + TVR+ IA LE
Sbjct: 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRD----------NIAFGLE------------ 98
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + + A+V +L+ + GDR S G + R++
Sbjct: 99 ------------IRKHPKAKIK-----ARVEELLELVQLEG-LGDRYPNQLSGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L + L +P +LLLDEP LD + WL + V V ++HD+ ++ +
Sbjct: 141 LARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200
Query: 326 IVETEMG 332
IV G
Sbjct: 201 IVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 5e-20
Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
EN+ K Y ++ V++ V++GE GL+G NGAGKTT ++++ +P SG A +
Sbjct: 4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHD 63
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
+ V R VR + I + V L + +++ + RL
Sbjct: 64 V----------VREPREVRRR--------IGIVFQDLSVDDEL-TGWENLYIHARL---- 100
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
V ++ +L+ +G + DRLV ++S G + R+ + + L+ P++
Sbjct: 101 -------YGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
Query: 281 LLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKI 326
L LDEPT LD T E++E + + +++ +H +QLC ++
Sbjct: 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRV 202
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 6e-20
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 71/241 (29%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ N+SKS+ T + D++ ++KKGE V L+G +G GKTT LR+IAG E+P SG ++
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLD 65
Query: 156 -KAKSNMKIAFLSQEFEVSM---------SRTVRE------EFMSAFKEEMEIAGKLERV 199
+ +++ ++ + M TV E + K+ EI RV
Sbjct: 66 GEDITDVPP----EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKA-EIK---ARV 117
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
++ALE L+G L+ F DR
Sbjct: 118 EEALE-------LVG--LEGF--------------------------------ADRKPHQ 136
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD 315
S G Q R++L + L+ +P +LLLDEP + LD + L+ + + V ++HD
Sbjct: 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD 196
Query: 316 R 316
+
Sbjct: 197 Q 197
|
Length = 352 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 1e-19
Identities = 108/527 (20%), Positives = 194/527 (36%), Gaps = 132/527 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ + I KS+ V LK V V GE L+G NGAGK+T +++++G EP G +
Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN 65
Query: 156 ---------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
K + + I + QE V TV E G+ +K
Sbjct: 66 NINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLY---------IGRHL-TKKVCGVN 115
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ D M R A+ L + KV D D VA+ S +
Sbjct: 116 IIDWREM-----------RVRAAMMLLRVGLKV------------DLDEKVANLSISHKQ 152
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL---EGYLGKQDVPMVIISHDRAFLDQLC 323
+ + K L+ D ++++DEPT+ L +++L L K+ +V ISH A + ++C
Sbjct: 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRIC 212
Query: 324 TKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383
+ V++ + + S + D+ N
Sbjct: 213 DRYT-----------------VMKDGSSVCS---------GMV---SDVSN--------- 234
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV-TIKNLEFGYEDRLLFNR 442
+ RL +++ F + V ++N+ DR
Sbjct: 235 ------DDIVRLMVGRELQNRFNAMK-----ENVSNLAHETVFEVRNVT--SRDRKKVRD 281
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG------------------ 484
+ ++ RGE G G G++ L+ + G++K GGE+ L
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341
Query: 485 -------EHNVLPNY-FEQNQAEALDLD----KTVLETVAEAAEDWRIDDIKGLLGRCNF 532
++ PN+ QN A + L K + E E ++ + LL
Sbjct: 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL---AL 398
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
K +++ ++ LSGG + ++ K++ +++ DEPT +D+ +K
Sbjct: 399 KCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAK 445
|
Length = 510 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 34/225 (15%)
Query: 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIA 164
K Y + V ++V++GE G +G NGAGKTT +R++ P SG A ++
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV--- 57
Query: 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
V R VR I + V + L + +++++MGRL L
Sbjct: 58 -------VREPRKVRRSIG--------IVPQYASVDEDL-TGRENLEMMGRLYG----LP 97
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ + + +L+ + DR V ++S G + R+ + L+ PD+L LD
Sbjct: 98 KDE-------AEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD 149
Query: 285 EPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKI 326
EPT LD T + Y L ++ V +++ +H D+LC +I
Sbjct: 150 EPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI 194
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 1e-19
Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 49/199 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
EN++KSYK V+ DV+ EV GE VGL+G NGAGKTT +I G PDSG +
Sbjct: 6 VAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 155 -------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ ++ + I +L QE + TV + M+ LE +K L+ A
Sbjct: 66 EDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAV----------LEIREKDLKKAE 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+L LL+EF + + D S S G + R
Sbjct: 116 RKEEL-DALLEEFHITHLR---------------------------DSKAYSLSGGERRR 147
Query: 268 MSLGKILLQDPDLLLLDEP 286
+ + + L +P +LLDEP
Sbjct: 148 VEIARALAANPKFILLDEP 166
|
Length = 243 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 33/199 (16%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG---------EHNVL-- 489
N + +++ GE +IGPNG GK+TL+ +I G +P+ GEVL EH +
Sbjct: 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81
Query: 490 --------PNYFE-----QNQAEALDLDKTVLETV---AEAAEDWRIDDIKGLLGRCNFK 533
P FE +N AL+ DK+V ++ A E RID++ +G
Sbjct: 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGL---- 137
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-- 591
D DR +LLS G+K L + + LL+LDEP + E E + G
Sbjct: 138 GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKH 197
Query: 592 TVITVSHDRYFVKQIVNRV 610
+++ V HD FV++I ++V
Sbjct: 198 SILVVEHDMGFVREIADKV 216
|
Length = 249 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 1e-19
Identities = 67/256 (26%), Positives = 110/256 (42%), Gaps = 69/256 (26%)
Query: 98 VKLENISKSY----------------------KGVTVLKDVTWEVKKGEKVGLVGVNGAG 135
++LEN+SKSY LKDV++EV +GE++GL+G NGAG
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 136 KTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195
K+T LR++AG PDSG V +++ L F E+
Sbjct: 61 KSTLLRLLAGIYPPDSGTV---TVRGRVSSLL-------------GLGGGFNPEL----- 99
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
+ +++ L GRLL L +++ + ++ ELG D D
Sbjct: 100 ---------TGRENIYLNGRLL---GLSRKEIDEKIDEIIE------FSELG---DFIDL 138
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPT----NHLDLDTIEWLEGYLGKQDVPMVI 311
V ++SSG + R++ +PD+LL+DE L L KQ +++
Sbjct: 139 PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE-LLKQGKTVIL 197
Query: 312 ISHDRAFLDQLCTKIV 327
+SHD + + +LC + +
Sbjct: 198 VSHDPSSIKRLCDRAL 213
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-19
Identities = 63/237 (26%), Positives = 110/237 (46%), Gaps = 37/237 (15%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ EN+S Y LKDV+ E++KGE+V L+G NG+GK+T L+++ G +P SG V+
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL- 62
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
V S+ K +E+ K+ V DD +
Sbjct: 63 ---------------------VDGLDTSSEKSLLELRQKVGLVF----QNPDDQLFGPTV 97
Query: 217 LDE--FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
DE F L + + ++ +V++ + +G + DR + S G + R+++ +L
Sbjct: 98 EDEVAFGLENL---GLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVL 153
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPM--VIISHDRAFLDQLCTKIV 327
P++LLLDEPT LD L L K ++ +I++HD + + ++V
Sbjct: 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVV 210
|
Length = 235 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 2e-19
Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 60/247 (24%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---- 155
L+NISK + +L D+ ++KG+ ++G +G+GK+T L II E+ DSG V
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 156 -------KAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K S K+ +L Q F + + TV +E +++ K +++ K
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETV--------EENLDLGLKYKKLSK---- 108
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+ + L++ L + Q K+ +L S G Q
Sbjct: 109 -KEKREKKKEALEKVGLNLKLKQ---------KIYEL------------------SGGEQ 140
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321
R++L + +L+ P L+L DEPT LD ++ L L + ++I++HD Q
Sbjct: 141 QRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE-LNDEGKTIIIVTHDPEVAKQ 199
Query: 322 LCTKIVE 328
+++E
Sbjct: 200 -ADRVIE 205
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 2e-19
Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 62/249 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++++N+ KS+ VLK + VKKGE V ++G +G+GK+T LR I EEPDSG +I
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 156 -----KAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K N+ K+ + Q+F + TV E A +V+
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA----------PIKVKG---- 106
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
KA+A + + +L+ ++G AD D A S G Q
Sbjct: 107 ------------------MSKAEA------EERALELLEKVGL-ADKADAYPAQLSGGQQ 141
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
R+++ + L +P ++L DEPT+ LD LD ++ L ++ + MV+++H+ F
Sbjct: 142 QRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK----DLAEEGMTMVVVTHEMGF 197
Query: 319 LDQLCTKIV 327
++ +++
Sbjct: 198 AREVADRVI 206
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-19
Identities = 63/198 (31%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 429 NLEFGYEDRLLFNRANLTIE-RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---- 483
L E RL + + E T I G +G GKSTLL+ I GLEKP GG ++L
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV 60
Query: 484 ---GEHNV-LPNY-------FEQNQAEALDLDKTVLETVA------EAAED-WRIDDIKG 525
+ LP F+Q AL V E +A ED +D++
Sbjct: 61 LFDSRKKINLPPQQRKIGLVFQQY---ALFPHLNVRENLAFGLKRKRNREDRISVDELLD 117
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM---- 581
LLG +L+R + LSGGEK R+A + + LL+LDEP + LD +
Sbjct: 118 LLGL----DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173
Query: 582 LEEAISEYKGTVITVSHD 599
L++ VI V+HD
Sbjct: 174 LKQIKKNLNIPVIFVTHD 191
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 2e-19
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 48/205 (23%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ I+K + GV DV+ VKKGE L+G NGAGK+T ++I+ G +PDSG +
Sbjct: 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV 63
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + I + Q F + + TV E +
Sbjct: 64 DGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENII---------------------- 101
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+G + L+ R+ A++ +L G D D VA S G Q
Sbjct: 102 -------LGLEPSKGGLIDRRQAR-------ARIKELSERYGLPVDP-DAKVADLSVGEQ 146
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHL 290
R+ + K L + LL+LDEPT L
Sbjct: 147 QRVEILKALYRGARLLILDEPTAVL 171
|
Length = 501 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-19
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 15/175 (8%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG--EHNVLPNYFE 494
R+LF + T+ GE + GPNG GK+TLL+++ GL +P GEV +
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPH 72
Query: 495 QNQAEALDLD--KTVLETVAEAAEDWRID------DIKGLLGRCNFKADMLDRKVSLLSG 546
+N L K L + E W I+ L D + LS
Sbjct: 73 RNILYLGHLPGLKPEL-SALENLHFWAAIHGGAQRTIEDALAAVGL-TGFEDLPAAQLSA 130
Query: 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSH 598
G++ RLA + + + L +LDEPT LD +L + + G V+ +H
Sbjct: 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 2e-19
Identities = 69/252 (27%), Positives = 112/252 (44%), Gaps = 65/252 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK + VT LKDV+ V KGE G++G +GAGK+T +R I G E P SG+
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ +++ +I + Q F + SRTV E +EIAG K E
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP----LEIAGVPKAEI 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ LE LL+ L D D A
Sbjct: 118 EERVLE-----------LLELVGL---------------------------EDKADAYPA 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
S G + R+ + + L +P +LL DE T+ LD +T + L + + +V+I+H
Sbjct: 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199
Query: 315 DRAFLDQLCTKI 326
+ + ++C ++
Sbjct: 200 EMEVVKRICDRV 211
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 3e-19
Identities = 61/206 (29%), Positives = 85/206 (41%), Gaps = 40/206 (19%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY------ 492
N +L + GE +IGPNG GK+TL LI G KP G V+ ++ LP +
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80
Query: 493 ----FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK--------------- 533
F Q L TVLE VA A + GLLGR +
Sbjct: 81 IARTF-QITRLFPGL--TVLENVAVGAHARL--GLSGLLGRPRARKEEREARERARELLE 135
Query: 534 ----ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI--- 586
++ DR LS G++ RL + + LL+LDEP L+ E L E I
Sbjct: 136 FVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195
Query: 587 -SEYKGTVITVSHDRYFVKQIVNRVV 611
T++ + HD V + +R+V
Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIV 221
|
Length = 250 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 3e-19
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 40/174 (22%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
+ +L++ RGE A++G NG GKSTL+K++ GL KP GE+L+ V + +A
Sbjct: 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA----SPRDA 72
Query: 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560
G+ V LS GE+ + + + +
Sbjct: 73 RRA---------------------GI------------AMVYQLSVGERQMVEIARALAR 99
Query: 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIVNRVV 611
+ LL+LDEPT L E L + I + VI +SH V +I +RV
Sbjct: 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVT 153
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 3e-19
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 28/199 (14%)
Query: 425 VTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y R + +LTI G+ A++G +GCGKST++ L+ P GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 482 LLGEHNVL-----------------PNYFEQNQAE--ALDLDKTVLETVAEAAEDWRIDD 522
LL ++ P F+ AE E V EAA+ I D
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 523 -IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
I L + ++ + S LSGG+K R+A + +++ +L+LDE T+ LD S+++
Sbjct: 121 FIMSLPDGYD---TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177
Query: 582 LEEAISEYKG--TVITVSH 598
++EA+ T I ++H
Sbjct: 178 VQEALDRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 5e-19
Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 29/214 (13%)
Query: 427 IKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEVLL 483
IK+L E + + NLT++ GE AI+GPNG GKSTL IMG + GE+L
Sbjct: 6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF 65
Query: 484 GEHNVL---PNYFE----------QNQAE-----ALDLDKTVLETVAEAAEDWR--IDDI 523
++L P+ E Q E D + + A I ++
Sbjct: 66 DGEDILELSPD--ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKEL 123
Query: 524 KGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
K + L+R V+ SGGEK R + ++ L +LDEP + LDI + +++
Sbjct: 124 KEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIV 183
Query: 583 EEAISEYKG---TVITVSHDRYFVKQIVNRVVEV 613
E I+ + V+ ++H + + I V V
Sbjct: 184 AEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217
|
Length = 251 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 5e-19
Identities = 126/561 (22%), Positives = 220/561 (39%), Gaps = 147/561 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
+ +ISK Y GV VLK + + + GE L+G NGAGK+T ++IIAG PDSG + I
Sbjct: 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIG 71
Query: 157 AKS----------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ I + QE + + +V+E + + K++++ AL
Sbjct: 72 GNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ 131
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+D LD + A +L+ D ++ +++
Sbjct: 132 LD--------LD--------SSAGSLEVADRQIVEIL----------------------- 152
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLC 323
+ L++D +L+LDEPT L E L L Q V +V ISH + QL
Sbjct: 153 -----RGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLA 207
Query: 324 TKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383
+I V R +G A + ++ T D+I + A
Sbjct: 208 DRI-----SVMR--DG----------------TIALSGKTADLS-TDDIIQAITPAAREK 243
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEF-GYEDRLLFNR 442
S+++K +E P R+Q P V+T+++L G+ +
Sbjct: 244 SLSASQKL--------WLELPGNRRQQAAGAP--------VLTVEDLTGEGFRN------ 281
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------- 488
+L + GE + G G G++ L + + GL RGG ++L +
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 489 -LPNYFEQNQAEALDLDKTV---------------LETVAEAAEDWRIDDIKGLLGRCNF 532
LP E Q+ L LD + ++ E A ++ + L
Sbjct: 342 YLP---EDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENA---VLERYRRALN---I 392
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE---MLEEAISEY 589
K + ++ LSGG + ++ K + LL++DEPT +D+ ++ L +I+
Sbjct: 393 KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ 452
Query: 590 KGTVITVSHDRYFVKQIVNRV 610
V+ +S D ++Q+ +RV
Sbjct: 453 NVAVLFISSDLEEIEQMADRV 473
|
Length = 510 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 6e-19
Identities = 61/198 (30%), Positives = 91/198 (45%), Gaps = 32/198 (16%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489
N +L ++ GE IIGPNG GK+T++ +I G +P G VL G ++
Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78
Query: 490 -------PNYFE-----QNQAEALDLDKTVLETVAE---AAEDWRIDDIKGLLGRCNFKA 534
P FE +N AL DK+V ++ A E RI+++ +G A
Sbjct: 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL----A 134
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--T 592
D DR LLS G+K L +++ LL+LDEP + E E + G +
Sbjct: 135 DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHS 194
Query: 593 VITVSHDRYFVKQIVNRV 610
V+ V HD FV+ I ++V
Sbjct: 195 VVVVEHDMEFVRSIADKV 212
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 6e-19
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 29/214 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+TI+N+ Y +++ + +L I +G T+IIGPNG GKSTLL ++ L K GE+ +
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61
Query: 485 EHNVLPNYFEQNQAEALDLDK---------TVLETVA----------EAAEDWRIDDIKG 525
+ + + A+ L + K TV + V ED RI I
Sbjct: 62 GLEL-TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI--INE 118
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV-LDEPTNHLDIP-SKEM-- 581
+ + + D+ DR + LSGG++ R AF ++ T V LDEP N+LD+ S ++
Sbjct: 119 AIEYLHLE-DLSDRYLDELSGGQRQR-AFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 582 -LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
L E T++ V HD F + +V +K
Sbjct: 177 ILRRLADELGKTIVVVLHDINFASCYSDHIVALK 210
|
Length = 252 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 7e-19
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 25/194 (12%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY------ 492
+ +L I +GE + GP+G GK+TLLKL+ G P G+V + +V L
Sbjct: 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78
Query: 493 ------FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSL- 543
F+ + L D+TV E VA E + +I+ +G + + + +
Sbjct: 79 RRIGVVFQDFR---LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP 135
Query: 544 --LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLE--EAISEYKGTVITVSH 598
LSGGE+ R+A + +V LL+ DEPT +LD S+ +L+ + +++ TVI +H
Sbjct: 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATH 195
Query: 599 DRYFVKQIVNRVVE 612
D V ++ +RV+
Sbjct: 196 DLSLVDRVAHRVII 209
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 55/247 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ ++KS+ +L V +V +GE + ++G +G+GK+T LR+I G PD G +
Sbjct: 9 IEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID 68
Query: 155 ---IKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
I S ++ L Q+ + S TV E +E KL E
Sbjct: 69 GEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE----HTKLP------E 118
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
S + ++ LM K + V L A L P + S G
Sbjct: 119 SLIRELVLM------------KLELVGLRGAAA---DLYP-------------SELSGGM 150
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQ-DVPMVIISHDRAFLD 320
+ R++L + + DP+LL LDEPT+ LD I+ L L + +++++HD L
Sbjct: 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLL 210
Query: 321 QLCTKIV 327
+ ++
Sbjct: 211 TIADRVA 217
|
Length = 263 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-18
Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 42/238 (17%)
Query: 387 SAEKKLERLQEEEQI---EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY-EDRLLFNR 442
+AE+ E L EE ++ P + I F +N+ F Y + +
Sbjct: 301 AAERLFELLDEEPEVEDPPDPLKDTIGSIEF-------------ENVSFSYPGKKPVLKD 347
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPN---Y 492
+ +IE GEK AI+GP+G GKSTL+KL++ L P GE+L+ ++ L
Sbjct: 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407
Query: 493 FEQNQAEALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNFKADM---LDRKV----S 542
Q + L T+ E +A A D I++ L F A++ D V
Sbjct: 408 VSQ---DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGV 464
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
LSGG++ RLA + +++ +L+LDE T+ LD ++ ++++A+ + T + ++H
Sbjct: 465 NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
|
Length = 567 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 33/223 (14%)
Query: 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++ +KNL Y + L + NL I +GE AIIGP+G GKSTLL+ + GL P GE
Sbjct: 2 MMIEVKNLSKTYPGGHQALKD-VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 481 VLLGEHNV-------LPNYFEQ----NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG- 528
+L + L Q L +VLE V + L G
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVL-LGRLGYTSTWRSLFGL 119
Query: 529 ----------RCNFKADMLDR---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
+ +LD+ + S LSGG++ R+A + +V+ +++ DEP LD
Sbjct: 120 FSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 576 IPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
S ++L++ E TVI H K+ +R++ +K
Sbjct: 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK 222
|
Length = 258 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 1e-18
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 36/171 (21%)
Query: 426 TIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL GY + + L +L +ERGE A++G NG GK+TLLK IMGL +PR G ++
Sbjct: 5 EVENLSAGYGKIQALRG-VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD 63
Query: 485 EHNV--LP----------------NYF-----EQNQAEALDLDKTVLETVAEAAEDWRID 521
++ LP F E+N + + A++ ++
Sbjct: 64 GEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR------DKEAQERDLE 117
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT 571
++ L R + +++ LSGGE+ LA + M +P LL+LDEP+
Sbjct: 118 EVYELFPRL---KERRNQRAGTLSGGEQQMLAIARALMSRPK-LLLLDEPS 164
|
Length = 237 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 1e-18
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--GGEVLL 483
IK+L + + NLTI++GE A++GPNG GKSTL K IMG K GE+L
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILF 61
Query: 484 GEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADMLDRKVS 542
++ L ++ + A I +K AD L R V+
Sbjct: 62 KGEDIT----------DLPPEERARLGIFLAFQYPPEIPGVK--------NADFL-RYVN 102
Query: 543 L-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSH 598
SGGEK R + ++ L +LDEP + LDI + ++ E I++ + +V+ ++H
Sbjct: 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 599 DRYFVKQIVNRVVEV 613
+ + I V V
Sbjct: 163 YQRLLDYIKPDRVHV 177
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 1e-18
Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 60/214 (28%)
Query: 99 KLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++EN+SK+Y G LKDV+ + GE V L+G +GAGK+T LR + G EP SG+V+
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 156 ---------KAKSNM--KIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLE 197
KA + +I + Q+F + +V E S ++ + K E
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE 121
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+ Q+AL L+ L LD + +L
Sbjct: 122 K-QRALA-----------ALERVGL---------LDKAYQRADQL--------------- 145
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+++ + L+Q P L+L DEP LD
Sbjct: 146 ---SGGQQQRVAIARALMQQPKLILADEPVASLD 176
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-18
Identities = 60/187 (32%), Positives = 79/187 (42%), Gaps = 41/187 (21%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------NYF 493
+ + GE ++GPNG GKSTLL + GL P G + + Y
Sbjct: 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAYL 74
Query: 494 EQNQAEA--------LDL---DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
Q Q L L DKT E VA A ++++ LG D L R V+
Sbjct: 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA-----LNEVAEALGL----DDKLGRSVN 125
Query: 543 LLSGGE--KARLAFCKFMVKP-----STLLVLDEPTNHLDIPSKEMLEEAISEY---KGT 592
LSGGE + RLA V P LL+LDEP N LD+ + L+ +SE
Sbjct: 126 QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIA 185
Query: 593 VITVSHD 599
V+ SHD
Sbjct: 186 VVMSSHD 192
|
Length = 248 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-18
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEA 514
STLLKLI GL +P G +LL + + Q L + TV E +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 515 A-EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
+ + L R + V LSGG+K R+A + ++K LL+LDEPT
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-18
Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 49/249 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++K + VT L D+++ V+KGE GL+G NGAGKTT +R+I G PDSG V+
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60
Query: 158 KSNM------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ +I +L +E + V ++ + +L+ ++K E A +D
Sbjct: 61 GKPLDIAARNRIGYLPEERGLYPKMKVIDQLV--------YLAQLKGLKK--EEARRRID 110
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L+ +L + + +V +L S G Q ++
Sbjct: 111 ---EWLERLELSEYA---------NKRVEEL------------------SKGNQQKVQFI 140
Query: 272 KILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328
++ DP+LL+LDEP + LD ++ ++ + L + +++ +H +++LC +++
Sbjct: 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200
Query: 329 TEMGVSRTY 337
G + Y
Sbjct: 201 LNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 52/233 (22%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ N+SK + L DV+ ++ GE V L+G +G+GKTT LR+IAG E PDSG ++
Sbjct: 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61
Query: 156 --KAKSNMK-----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ +++ + F+ Q + + TV + AF +
Sbjct: 62 GGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV--AFGLRV------------------ 101
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG--DRLVASFSSGWQM 266
+ +++ + AKV +L L D DR A S G +
Sbjct: 102 ---------------KPRSERPPEAEIRAKVHEL---LKLVQLDWLADRYPAQLSGGQRQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
R++L + L +P +LLLDEP LD + L +L + V V ++HD
Sbjct: 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 2e-18
Identities = 53/180 (29%), Positives = 77/180 (42%), Gaps = 29/180 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG------------EHNVLPN 491
N ERGE A++G NG GKSTLL + GL +P+ G VL+ E
Sbjct: 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG 71
Query: 492 YFEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
Q+ + L V + VA EA + R+ + +G + +R
Sbjct: 72 LVFQDPDDQL-FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR----ERPTH 126
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---SEYKGTVITVSHD 599
LSGGEK R+A + +L+LDEPT LD +E + + TV+ +HD
Sbjct: 127 CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 3e-18
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 42/228 (18%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++ ++NL + A + +E GE I+G +G GKSTL +MGL
Sbjct: 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62
Query: 478 G----GEVLLGEHNVLPN--------------YFEQNQAEALDLDKTVLETVAEA----- 514
G GEV+L ++L Q+ +L+ T+ + + EA
Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122
Query: 515 --AEDWRIDDIKGLLGRCNFKADML-DRKVSLLSGGEKARL----AFCKFMVKPSTLLVL 567
+ LL + DR LSGG + R+ A KP LL+
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL---KPK-LLIA 178
Query: 568 DEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
DEPT LD+ ++ ++L++ E V+ ++HD V ++ +RVV
Sbjct: 179 DEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV 226
|
Length = 539 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 3e-18
Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 55/246 (22%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ N+S SY + L +V+ ++ GEKV ++G G+GK+T L+++AG +P SG+V+
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 156 KAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
++++ I ++ Q+ + T+R+ ER+ +A E
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTL-FYGTLRDNITLGAPL-----ADDERILRAAEL 116
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A D + + + DL ++G + G L S G +
Sbjct: 117 AGVT-DFVNKHPNGLDL----------------------QIG---ERGRGL----SGGQR 146
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321
++L + LL DP +LLLDEPT+ +D+++ E L LG D ++II+H + LD
Sbjct: 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLD- 203
Query: 322 LCTKIV 327
L +I+
Sbjct: 204 LVDRII 209
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 66/219 (30%), Positives = 85/219 (38%), Gaps = 48/219 (21%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN- 487
NL + R L + +L + GE AI+GPNG GKSTLLK + G P GEV L
Sbjct: 6 NLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65
Query: 488 -------------VLPNYFEQNQAEALDLDKTVLETV----------AEAAEDWRIDDIK 524
VLP Q +L TV E V E ED RI
Sbjct: 66 NSWPPEELARHRAVLP------QNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA-- 117
Query: 525 GLLGRCNFKADML---DRKVSLLSGGEKARLAFCKFM------VKPSTLLVLDEPTNHLD 575
+ D+ R LSGGE+ R+ + + V L LDEPT+ LD
Sbjct: 118 ----QALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173
Query: 576 IPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVV 611
I + + G V+ V HD Q +R+V
Sbjct: 174 IAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIV 212
|
Length = 259 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 4e-18
Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 27/202 (13%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488
+GY +L + +LTI+ KT I+G +G GKSTL KL++G + R GE+LL ++
Sbjct: 483 YGYGSNILSD-ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541
Query: 489 -------LPNYFEQNQAEALDLDKTVLET-VAEAAEDWRIDDIKGLLGRCNFKADM---- 536
NY Q E ++LE + A E+ D+I K D+
Sbjct: 542 DRHTLRQFINYLPQ---EPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMP 598
Query: 537 ------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAISEY 589
L + S +SGG+K R+A + ++ S +L+LDE T++LD I K+++ ++
Sbjct: 599 LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ 658
Query: 590 KGTVITVSHDRYFVKQIVNRVV 611
T+I V+H R V + ++++
Sbjct: 659 DKTIIFVAH-RLSVAKQSDKII 679
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 4e-18
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +N+ Y ++ + NLTIE GE +IGP+G GK+T LK+I L +P GE+L+
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 485 EHNV--LPNYFEQN------QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLL 527
++ L + Q L TV E +A + R D++ L+
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLV 121
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
G ++ DR LSGG++ R+ + + +L++DEP LD +++ L+E I
Sbjct: 122 GLD--PSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179
Query: 588 ----EYKGTVITVSHD 599
E T++ V+HD
Sbjct: 180 ELQKELGKTIVFVTHD 195
|
Length = 309 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 4e-18
Identities = 68/260 (26%), Positives = 120/260 (46%), Gaps = 53/260 (20%)
Query: 385 ASSAEKKLERL----QEEEQIEKPFQRKQM--KIRFPERGRSGRSVVTIKNLEFGY--ED 436
A +A + L+ L E + + R ++ +I F +N+ F Y ++
Sbjct: 431 AKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEF-------------RNVSFAYPGQE 477
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LP---- 490
+ +LTI GEK AIIG G GKSTLLKL++GL +P G VLL ++ +
Sbjct: 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537
Query: 491 ----NYFEQNQA-------EALDLDKTVL--ETVAEAAEDWRIDDIKGLLGRCNFKADML 537
Y Q+ + + L E + AAE + G+ D L
Sbjct: 538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAE------LAGVTEFVRRHPDGL 591
Query: 538 DRKVS----LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-- 591
D ++ LSGG++ +A + +++ +L+LDEPT+ +D S+E ++ + +
Sbjct: 592 DMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGK 651
Query: 592 TVITVSHDRYFVKQIVNRVV 611
T++ V+H R + +V+R++
Sbjct: 652 TLVLVTH-RTSLLDLVDRII 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 5e-18
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 34/201 (16%)
Query: 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ F Y E + + N +I+ GE AI+GP G GK+TL+ L+M P+ G++L+
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 484 G-------EHNVLPNYFEQNQAEALDLDKTVLET------------VAEAAEDWRIDDI- 523
L + + T++E V EAA++ D
Sbjct: 63 DGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFI 122
Query: 524 ----KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
G +L LS GE+ LA + M++ +L+LDE T+++D ++
Sbjct: 123 MKLPNGY-------DTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175
Query: 580 EMLEEAISE-YKG-TVITVSH 598
++++EA+ + KG T I ++H
Sbjct: 176 KLIQEALEKLMKGRTSIIIAH 196
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 5e-18
Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 23/182 (12%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQNQAEALDL 503
+I E I+GPNG GK+T +K++ G+ KP G++ + V P Y + D
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKA------DY 74
Query: 504 DKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF 557
+ TV + ++ +D ++ + K L +LDR+V LSGGE R+A
Sbjct: 75 EGTVRDLLSSITKDFYTHPYFKTEIAKPLQ-----IEQILDREVPELSGGELQRVAIAAC 129
Query: 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEV 613
+ K + + +LDEP+ +LD+ + M + I + + T V HD + + +R++
Sbjct: 130 LSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF 189
Query: 614 KG 615
+G
Sbjct: 190 EG 191
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 5e-18
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 32/217 (14%)
Query: 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V KN+ F Y + +L I GE A++GP+G GKSTL+ LI G +L
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 483 LGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN---F 532
+ H+V L + + TV E +A ++++ N F
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 533 KADM---LDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
++ D + LSGG++ R+A + ++K +L+LDE T+ LD S+ +++ A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 586 ISE-YKG-TVITVSH--------DRYFV---KQIVNR 609
+ K T ++H DR V +IV R
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVER 217
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 6e-18
Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 27/234 (11%)
Query: 389 EKKLERLQE--EEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLFNRAN 444
E L RL + ++ + ++ E V ++N+ FGY + L +
Sbjct: 440 EGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFS 499
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GE------HNVLPN------ 491
LT++ G++ A++G +G GKST+ KL+ GL +P GE+L G VL N
Sbjct: 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559
Query: 492 ----YFEQNQAEALDL-DKTVLET-VAEAAEDWRI-DDIKGLLGRCNFKADMLDRKVSLL 544
FE + L L D T+ + + A +D I D I G + L + L
Sbjct: 560 QDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDA---ELAEGGANL 616
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH 598
SGG++ RL + +V+ ++L+LDE T+ LD +++++++ + T I V+H
Sbjct: 617 SGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH 670
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (207), Expect = 6e-18
Identities = 65/195 (33%), Positives = 91/195 (46%), Gaps = 25/195 (12%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEH 486
+ L GY + + I G TAIIGPNGCGKSTLL+ + L P G V L GEH
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH 70
Query: 487 NVLPNYFEQNQAEALDL---------DKTVLETVAEAA-------EDWRIDDIKGLLG-- 528
+ +Y + A + L D TV E VA WR +D + +
Sbjct: 71 --IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAM 128
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+ + D+ V LSGG++ R + + + +++LDEPT LDI + L E +SE
Sbjct: 129 QATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188
Query: 589 Y---KG-TVITVSHD 599
KG T+ V HD
Sbjct: 189 LNREKGYTLAAVLHD 203
|
Length = 265 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 6e-18
Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 27/188 (14%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495
LT +GE TAI+GP+G GKSTLL LI G E P+ G VL+ +V + F++
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 496 NQAEA-LDLDKTV-------LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
N A L +++ V L+ AE + I+ +G + R LSGG
Sbjct: 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQ--AIEVALARVGLAGLEK----RLPGELSGG 132
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLE---EAISEYKGTVITVSHDRYFV 603
E+ R+A + +V+ +L+LDEP LD EML+ + +E K TV+ V+H
Sbjct: 133 ERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA 192
Query: 604 KQIVNRVV 611
K++ RVV
Sbjct: 193 KRLAQRVV 200
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 6e-18
Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 26/216 (12%)
Query: 424 VVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+V +N+ F Y D L+ + T+ GE TA++GP+G GKST++ L+ +P+GG+
Sbjct: 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ 70
Query: 481 VLLG-------EHNVL----------PNYFEQNQAE--ALDLDKTVLETVAEAAEDWRID 521
VLL EH L P F ++ + A L E V EAA+
Sbjct: 71 VLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAH 130
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
L + ++ K S LSGG+K R+A + +++ +L+LDE T+ LD S++
Sbjct: 131 SFISELAS-GYDTEV-GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 582 LEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKG 615
+++A+ ++ + TV+ ++H V++ +V G
Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 7e-18
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
+ L F Y R + + T+ G A++GPNG GKSTL L+ L + G++ + H
Sbjct: 4 VAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63
Query: 487 NV----------LPNYFEQNQAEALDLDKTVLETV-----------AEAAEDWRIDDIKG 525
++ L F+Q LDLD +V + + AEA RI ++
Sbjct: 64 DLRRAPRAALARLGVVFQQP---TLDLDLSVRQNLRYHAALHGLSRAEARA--RIAELLA 118
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
LG A+ D KV L+GG + R+ + ++ LL+LDEPT LD S+ +
Sbjct: 119 RLGL----AERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAH 174
Query: 586 I 586
+
Sbjct: 175 V 175
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 8e-18
Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 59/253 (23%)
Query: 98 VKLENISKSYKGVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ EN+SK+Y G L+DV++ + KGE V L G +GAGK+T L++I G+E P G ++
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 157 AK---SNMK---IAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
S +K I FL Q+F + RTV E A + + GK R +
Sbjct: 62 NGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENV--ALP--LRVIGKPPREIRRR 117
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
S V +DL+G L K L +L S G
Sbjct: 118 VSEV--LDLVG--------------------LKHKARALPSQL--------------SGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFL 319
Q R+++ + ++ P +LL DEPT +LD D + E + + +++ +HD +
Sbjct: 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE-INRLGTTVLMATHDLELV 200
Query: 320 DQLCTKIVETEMG 332
+++ +++ E G
Sbjct: 201 NRMRHRVLALEDG 213
|
Length = 223 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 8e-18
Identities = 61/227 (26%), Positives = 88/227 (38%), Gaps = 48/227 (21%)
Query: 411 KIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ G S + I + + + + RGE+ +IG NG GKSTLL+L+
Sbjct: 9 SYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLL 68
Query: 471 MGLEKPRGGEV-------------------LLGEHNVLPNYFEQNQAEALDLDKTVLETV 511
G+ P G V L G N+ N L L +
Sbjct: 69 AGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLN------GRLLGLSR------ 116
Query: 512 AEAAEDWRIDDIKGL--LGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLD 568
E E +ID+I LG +D V S G KARLAF ++P LL+ D
Sbjct: 117 KEIDE--KIDEIIEFSELGDF------IDLPVKTYSSGMKARLAFAIATALEPDILLI-D 167
Query: 569 EPT----NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
E + L E + + K TVI VSHD +K++ +R +
Sbjct: 168 EVLAVGDAAFQEKCQRRLRELLKQGK-TVILVSHDPSSIKRLCDRAL 213
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 8e-18
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 60/215 (27%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
++++N+SK+Y G LKDV E+ +GE V ++G +GAGK+T LR + G +P SG ++
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 156 ----------KAKSNM--KIAFLSQEFEVSMSRTV-------REEFMSAFKEEMEIAGKL 196
K + I + Q+F + +V R + S ++ + K
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
++ +AL++ L+ + LD + S L
Sbjct: 124 DK-AQALDA-----------LERVGI---------LDKAYQRASTL-------------- 148
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+++ + L+Q P ++L DEP LD
Sbjct: 149 ----SGGQQQRVAIARALVQQPKIILADEPVASLD 179
|
Length = 258 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 9e-18
Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 42/213 (19%)
Query: 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL--------- 483
G D + +L+I +GE AI+G +G GKSTLL L+ GL+ P GEVL
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLS 73
Query: 484 -GEHNVLPN------YFEQNQAEALDLDKTVLETVA-----------EAAEDWRIDDIKG 525
E L N Y Q L D T LE VA EA E
Sbjct: 74 SNERAKLRNKKLGFIY----QFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYE 124
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EM 581
+L + + ++ + S LSGGE+ R+A + +V +L++ DEPT +LD + ++
Sbjct: 125 MLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 582 LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
+ E E + + V+HD K++ +RV+E+K
Sbjct: 184 MLELNRELNTSFLVVTHDLELAKKL-DRVLEMK 215
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 9e-18
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 22/198 (11%)
Query: 423 SVVTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
S++ KN+ F Y+ F + I +G+ T+I+G NG GKST+ KL++G+EK + GE
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 481 VLLGEHNVLPNYFE----------QNQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLG 528
+ + + FE QN + + V VA E+ + D++ +
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQN-PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVS 124
Query: 529 RCNFKADMLDRKVS---LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+ DML+R LSGG+K R+A + ++++LDE T+ LD +++ L +
Sbjct: 125 EALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDL 184
Query: 586 ISEYKG----TVITVSHD 599
+ + K T+I+++HD
Sbjct: 185 VRKVKSEHNITIISITHD 202
|
Length = 269 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 1e-17
Identities = 85/321 (26%), Positives = 137/321 (42%), Gaps = 69/321 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K+E +S Y +L + + G ++GL+G NGAGK+T ++++AG+ P SG + A
Sbjct: 313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA 372
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K +K+ + +Q + EF+ A
Sbjct: 373 KG-IKLGYFAQH---------QLEFLRA-------------------------------- 390
Query: 218 DEFDL--LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
DE L L R A L+ K+ + GF D FS G + R+ L I+
Sbjct: 391 DESPLQHLARLAPQE----LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW 446
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
Q P+LLLLDEPTNHLDLD + L L + +V++SHDR L + G
Sbjct: 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVE 506
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLE-- 393
++G+ Y W+ +KQ+ + ++ ANS +A +K+ E
Sbjct: 507 PFDGDLEDY----QQWLSDV----QKQENQTDEAPK-----ENNANSAQARKDQKRREAE 553
Query: 394 -RLQEE---EQIEKPFQRKQM 410
R Q + ++I + K+M
Sbjct: 554 LRTQTQPLRKEIAR--LEKEM 572
|
Length = 638 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 1e-17
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 29/195 (14%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQN 496
N++I GE ++GP+G GKSTLLKLI E P G + + +V +P Y +
Sbjct: 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP-YLRRK 79
Query: 497 -----QAEALDLDKTVLETVAEAAE-------DW--RIDDIKGLLGRCNFKADMLDRKVS 542
Q L D+ V E VA A E + R+ L+G + + +
Sbjct: 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL----PA 135
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLE--EAISEYKGTVITVSHD 599
LSGGE+ R+A + +V T+L+ DEPT +LD + E++ + I++ TV+ +H
Sbjct: 136 ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195
Query: 600 RYFVKQIVNRVVEVK 614
+ V +RV+ ++
Sbjct: 196 KELVDTTRHRVIALE 210
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 1e-17
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 23/196 (11%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-----YFEQNQAE 499
L+ ++GE ++GPNG GK+TLL+ I+GL P G V + + Y Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 500 ALDLDKTVLETVAEA------------AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
A D +V TV D+ ++ L R ++ DR V LSGG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA--VRDALRRVGL-TELADRPVGELSGG 117
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVK 604
++ R+ + + ++L+LDEP LD+P++E+L E E G ++ +HD
Sbjct: 118 QRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAM 177
Query: 605 QIVNRVVEVKGSNLQD 620
+RVV + G + D
Sbjct: 178 ATCDRVVLLNGRVIAD 193
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-17
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVLPNYF 493
R LF+ + T+ GE + GPNG GK+TLL+++ GL P G VLL +
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIA 72
Query: 494 EQ----NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
A + +VLE + D + ++ L R DR V+ LS G++
Sbjct: 73 RGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNG-FEDRPVAQLSAGQQ 131
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSH 598
R+A + ++ L +LDEPT LD EA++ + G V+ +H
Sbjct: 132 RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 1e-17
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 33/210 (15%)
Query: 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
+ ++ ++ I+NL ++ + + +LTI +GE A++G +GCGKSTLL+++ G E
Sbjct: 10 AKTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE 69
Query: 475 KPRGGEVLLGEHNV--LPNY------------------FEQNQAEALDLDKTVLETVAEA 514
+P G+++L ++ +P Y EQN A L DK + +A
Sbjct: 70 QPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK-----LPKA 124
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
R++++ GL+ F RK LSGG++ R+A + + K LL+LDEP L
Sbjct: 125 EIASRVNEMLGLVHMQEFAK----RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL 180
Query: 575 DIPSKEMLEEA---ISEYKG-TVITVSHDR 600
D ++ ++ I E G T + V+HD+
Sbjct: 181 DKKLRDRMQLEVVDILERVGVTCVMVTHDQ 210
|
Length = 377 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 28/216 (12%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--GGEVLL 483
IK+L ED+ + NLT+++GE AI+GPNG GKSTL K I G G +L
Sbjct: 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
Query: 484 GEHNVLPNYFE-----------QNQAE-----ALDLDKTVLETVAEAAEDWRID------ 521
++L + Q E L+ ++ L A + +D
Sbjct: 62 KGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK 121
Query: 522 DIKGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
+K L + L+R V+ SGGEK R + + L +LDE + LDI + +
Sbjct: 122 LLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALK 181
Query: 581 MLEEAISEYKG---TVITVSHDRYFVKQIVNRVVEV 613
++ E I+ + + + ++H + + I V V
Sbjct: 182 IVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHV 217
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 17/206 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y + + +LT+ G ++GPNG GK+TL++++ L P G + +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 485 EHNVL--PNYFEQN-----QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
+VL P + Q + + TV E + A I + +L N
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVN 119
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
D +K+ LSGG + R+ + +V ++L++DEPT LD + +SE
Sbjct: 120 L-GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE 178
Query: 592 TVITV--SHDRYFVKQIVNRVVEVKG 615
I + +H V+ + N+V +
Sbjct: 179 DRIVILSTHIVEDVESLCNQVAVLNK 204
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-17
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 61/254 (24%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ N++K+Y G L + + GE V LVG +GAGK+T L++I +E P SG +
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 157 AKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER-VQKA 202
++ KI + Q+F + R V E A +E+ G R ++K
Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFA----LEVTGVPPREIRKR 116
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ +A++ + L + L A S
Sbjct: 117 VPAALELVGLSHKH-------------------------------------RALPAELSG 139
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAF 318
G Q R+++ + ++ P +L+ DEPT +LD DT + L+ + K +V+ +H +
Sbjct: 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVATHAKEL 198
Query: 319 LDQLCTKIVETEMG 332
+D +++ E G
Sbjct: 199 VDTTRHRVIALERG 212
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 54/205 (26%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + + Y +R + N+ +L I G+ A++G +GCGKSTLL+L+ GLE P GE+L G
Sbjct: 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72
Query: 485 EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR--------------IDDIKGLLGRC 530
+AEA ED R ID++ GL +
Sbjct: 73 T-----------------------APLAEAREDTRLMFQDARLLPWKKVIDNV-GLGLKG 108
Query: 531 NFKADMLD--RKVSL----------LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD--- 575
++ L V L LSGG+K R+A + ++ LL+LDEP LD
Sbjct: 109 QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 576 -IPSKEMLEEAISEYKGTVITVSHD 599
I ++++E ++ TV+ V+HD
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHD 193
|
Length = 257 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 3e-17
Identities = 67/270 (24%), Positives = 107/270 (39%), Gaps = 56/270 (20%)
Query: 60 AKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY-KGVTVLKDVTW 118
+A +D S + + A+ + LEN+S Y G L D+
Sbjct: 287 GEAAADKLFTLLES----PVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNL 342
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----------NVIKAKSNMKIAFLSQ 168
+K G+ LVG +GAGK+T L ++ G P G ++ +I+++SQ
Sbjct: 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402
Query: 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228
+ T+RE + A E + AL+ A LL+
Sbjct: 403 N-PYLFAGTIRENILLA-----RPDASDEEIIAALDQA--------GLLEFVPKPDG--- 445
Query: 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGKILLQDPDLLLLDEPT 287
LDT +G + G L SG Q R++L + LL LLLLDEPT
Sbjct: 446 ---LDT----------VIG---EGGAGL-----SGGQAQRLALARALLSPASLLLLDEPT 484
Query: 288 NHLDLDTIEWLEGYLGK--QDVPMVIISHD 315
HLD +T + + L + + +++I+H
Sbjct: 485 AHLDAETEQIILQALQELAKQKTVLVITHR 514
|
Length = 559 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 80.9 bits (201), Expect = 3e-17
Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 52/200 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++EN++ Y +L V+ V +GE V L+G NGAGKTT L+ I G P SG++
Sbjct: 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++ I ++ + + TV E + A + + + LE
Sbjct: 62 RDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLG-----AYARRRAKRKARLE--- 113
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
R+ + F L+ + +L + S G Q
Sbjct: 114 -------RVYELFPRLKERR--------------------------KQLAGTLSGGEQQM 140
Query: 268 MSLGKILLQDPDLLLLDEPT 287
+++ + L+ P LLLLDEP+
Sbjct: 141 LAIARALMSRPKLLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 3e-17
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 20/215 (9%)
Query: 422 RSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
++ +++ F Y D + T+ GE A++GP+G GKST+ L+ L +P G
Sbjct: 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535
Query: 479 GEVLLG-------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
G+VLL +H+ L E + +V E +A D ++I N
Sbjct: 536 GQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAAN 595
Query: 532 ---FKADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
F + + K S LSGG+K R+A + +V+ +L+LDE T+ LD +++
Sbjct: 596 AHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL 655
Query: 582 LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGS 616
L+E+ S TV+ ++H V++ +V KGS
Sbjct: 656 LQESRSRASRTVLLIAHRLSTVERADQILVLKKGS 690
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 3e-17
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ F Y+ R + + TI G+K AI+GP+G GKST+L+L+ G +L+
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 484 GEH---NVLPNYFEQN-----QAEALDLDKTVL------------ETVAEAAEDWRIDD- 522
V + + Q L + T+ E V EAA+ +I D
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVL-FNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDK 119
Query: 523 IKGLLGRCNFKADMLDRKVS----LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
I D D V LSGGEK R+A + ++K +L+LDE T+ LD +
Sbjct: 120 IMRF-------PDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172
Query: 579 KEMLEEAISE-YKG-TVITVSH 598
+ ++ A+ + KG T I ++H
Sbjct: 173 EREIQAALRDVSKGRTTIVIAH 194
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 4e-17
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S+V+++N+ + R + + +L ++ G+ ++GPNG GKSTL+++++GL P G V+
Sbjct: 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-VI 61
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDR 539
+ Y Q L LD T+ TV + +DI L R ++D
Sbjct: 62 KRNGKLRIGYVPQK----LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQ-AGHLIDA 116
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGT----VIT 595
+ LSGGE R+ + ++ LLVLDEPT +D+ + L + I + + V+
Sbjct: 117 PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM 176
Query: 596 VSHDRYFV 603
VSHD + V
Sbjct: 177 VSHDLHLV 184
|
Length = 251 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-17
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 51/219 (23%)
Query: 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
++ S +V ++ + ++ + + + +LTI GE ++GP+GCGK+T+L+LI G E
Sbjct: 5 NKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64
Query: 475 KPRGGEVLL-GE------------HNVLPNY--------FEQNQAEALDLDKT----VLE 509
P G ++L G+ + V +Y FE N A L + KT +
Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE-NVAFGLRMQKTPAAEITP 123
Query: 510 TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
V EA +++ + RK LSGG++ R+A + +V +L+LDE
Sbjct: 124 RVMEALRMVQLE-------------EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 170
Query: 570 PTNHLDIP-SKEMLEEAISEYKG-------TVITVSHDR 600
+ LD K+M +E K T + V+HD+
Sbjct: 171 SLSALDYKLRKQMQ----NELKALQRKLGITFVFVTHDQ 205
|
Length = 375 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 4e-17
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 59/245 (24%)
Query: 65 DVESLFSSSADEFENKKYSNKQSNTGASSISS--------GVKLENISKSYKGVTVLKDV 116
+ + A ++ + + +S + L +SKSY V+ +
Sbjct: 1 LLTRAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGL 60
Query: 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--------KAK-SNMKIAFLS 167
++ V GE GL+G NGAGK+T R+I G PD+G + +A+ + +I +
Sbjct: 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120
Query: 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ-KALESAVDDMDLMGRLLDEFDLLQRK 226
Q + + TVRE + + G+ + + +E+ + L EF L+ K
Sbjct: 121 QFDNLDLEFTVRENLL--------VFGRYFGMSTREIEAVIPS-------LLEFARLESK 165
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A DA+VS L S G + R++L + L+ DP LL+LDEP
Sbjct: 166 A--------DARVSDL------------------SGGMKRRLTLARALINDPQLLILDEP 199
Query: 287 TNHLD 291
T LD
Sbjct: 200 TTGLD 204
|
Length = 340 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 4e-17
Identities = 114/570 (20%), Positives = 228/570 (40%), Gaps = 130/570 (22%)
Query: 99 KLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKT----TQLRIIAGQEEPD 150
+ N+S ++ V +K ++++++ GE + LVG +G+GK+ + L ++ P
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-----PS 62
Query: 151 SGNVIKAKSNMKIAFLSQEFEVSMSRT---VREEFMSA-FKEEMEIAGKLERVQKALESA 206
+ S I F ++ + R VR + F+E M L + K L
Sbjct: 63 PAAAHPSGS---ILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF----SS 262
+ R + ++ A+ +L+ +G + ++ + ++ S
Sbjct: 120 L-----------------RLHRGLSRAAARARALELLELVGI--PEPEKRLDAYPHELSG 160
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
G + R+ + L +PDLL+ DEPT LD LD ++ L+ LG + ++ I+HD
Sbjct: 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG---MAILFITHD 217
Query: 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR 375
+ + ++ YV++ +E+ + T+ L+
Sbjct: 218 LGIVRKFADRV-----------------YVMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260
Query: 376 LGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG----RSGRSVVTIKNLE 431
+G A LE + +++ FP +G R+ + + +
Sbjct: 261 EPSGDPPPLPEDAPVLLEV-------------EDLRVWFPIKGGFLRRTVDHLRAVDGI- 306
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----GEVLLG-- 484
+LT+ RG+ ++G +G GKSTL ++ L +G G+ + G
Sbjct: 307 ------------SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLS 354
Query: 485 EHNVLPNYFE-----QNQAEALDLDKTVLETVAE----------AAEDWRIDDIKGLLGR 529
+ P Q+ +L TV + + E AAE R + L
Sbjct: 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAE--RDQRVIEALEE 412
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK----EMLEE 584
+R SGG++ R+A + ++ KP L++LDEPT+ LD + ++L +
Sbjct: 413 VGLDPATRNRYPHEFSGGQRQRIAIARALILKPE-LILLDEPTSALDRSVQAQVLDLLRD 471
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
++ + + +SHD V+ + +RV+ ++
Sbjct: 472 LQQKHGLSYLFISHDLAVVRALCHRVIVMR 501
|
Length = 534 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 78.2 bits (194), Expect = 5e-17
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++L I+K + GV L V+ V++GE L+G NGAGK+T ++I++G +PDSG +
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 5e-17
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 29/211 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ + D + + +L I GE A++GP+G GK+TLL+LI GLE+P G +L G
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62
Query: 485 EHNVLPNYFEQN------QAEALDLDKTVLETVA-------------EAAEDWRIDDIKG 525
+ ++ Q AL TV + VA EA ++ ++
Sbjct: 63 GEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLK 122
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIP-SKEM-- 581
L+ DR + LSGG++ R+A + + V+P LL LDEP LD KE+
Sbjct: 123 LVQLDWLA----DRYPAQLSGGQRQRVALARALAVEPKVLL-LDEPFGALDAKVRKELRR 177
Query: 582 -LEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
L E T + V+HD+ ++ +RVV
Sbjct: 178 WLRRLHDELHVTTVFVTHDQEEALEVADRVV 208
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 5e-17
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 33/204 (16%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL------------LGEHN 487
+LT+ GE A+ GP+G GKSTLLK + P G +L
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPRE 83
Query: 488 VLP------NYFEQNQAEALDL--DKTVLETVAEAAEDWRIDD------IKGLLGRCNFK 533
VL Y Q L + + LE VAE + + + LL R N
Sbjct: 84 VLEVRRKTIGYVSQ----FLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIP 139
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-- 591
+ + SGGE+ R+ + + +L+LDEPT LD +++++ E I+E K
Sbjct: 140 ERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARG 199
Query: 592 -TVITVSHDRYFVKQIVNRVVEVK 614
+I + HD + + +RV++V
Sbjct: 200 AALIGIFHDEEVRELVADRVMDVT 223
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 5e-17
Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 43/186 (23%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL--GEHNVLP--------- 490
R +LT+ERGE+ AI+GP+G GKSTLL LI G P G + L +H P
Sbjct: 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76
Query: 491 ----NYF-----EQNQAEALD----LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
N F QN L+ L+ E + A I+ D+L
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-------------DLL 123
Query: 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS--KEML---EEAISEYKGT 592
R LSGG++ R+A + +V+ +L+LDEP + LD P+ +EML + E + T
Sbjct: 124 ARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD-PALRQEMLTLVSQVCQERQLT 182
Query: 593 VITVSH 598
++ VSH
Sbjct: 183 LLMVSH 188
|
Length = 232 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 5e-17
Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
KNL + + N +LT+ + ++GPNG GKSTLLK+I G+ +P GE++ H
Sbjct: 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62
Query: 487 ----NVLPNYFEQNQAEALDLDKTVLE-----TVAEAAEDWRIDDIKGLLGRCNFKADML 537
L ++ L + T E T D RID++ ++ N
Sbjct: 63 PWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG---- 118
Query: 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVI 594
+K S G K RL ++ LL+LDEPTN LD + L E I + TVI
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVI 178
Query: 595 TVSHDRYFVKQIVNRV 610
SH V+Q+ + +
Sbjct: 179 LSSHILSEVQQLADHI 194
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 6e-17
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++L+N+SK Y TVL DV+ ++ GE V L+G +G+GK+T LR IAG EEPDSG++
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 155 ---------IKAKSNMKIAFLSQEFEVSMSRTVRE 180
+I + Q+F + TV E
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE 95
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 6e-17
Identities = 69/280 (24%), Positives = 111/280 (39%), Gaps = 58/280 (20%)
Query: 380 ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RL 438
A R + + LE Q + + + + R + + +T++NL D +
Sbjct: 354 ATLLRLAEFRQALEAAQMDTE-----KPARTGRRI-DFDDNADHGITLENLSLRTPDGQT 407
Query: 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGEHNVLP 490
L + N + GE+ I G +G GK++LL+ + GL P +L LP
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLF-----LP 462
Query: 491 N--YFEQ----------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
Y Q N A D ++ + + LG + D D
Sbjct: 463 QRPYLPQGTLREALCYPNAAPDFS-DAELVAVLHKVG-----------LGDLAERLDEED 510
Query: 539 RKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK-EMLEEAISEYKG-TVIT 595
R +LSGGE+ RLAF + ++ KP + LDE T+ LD ++ + + E TVI+
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPK-WVFLDEATSALDEETEDRLYQLLKEELPDATVIS 569
Query: 596 VSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNV----CFTS 631
V H R + +R +E L D AG N+ T
Sbjct: 570 VGH-RPTLWNFHSRQLE-----LLDDAGGQNLKPPALPTE 603
|
Length = 604 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 7e-17
Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 52/245 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L ++KS+ G TVLK V +V++GE + ++G +G+GK+T LR+I G PDSG V
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV--- 57
Query: 158 KSNMKIAFLSQEFEVSMSRT----VREEFMSAFKEEMEIAGKLERVQKALESAVDDMD-- 211
+ E +S +R F+ AL D +
Sbjct: 58 -------LIDGEDISGLSEAELYRLRRRMGMLFQ------------SGAL---FDSLTVF 95
Query: 212 --LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ L + L + + + + L+ L+A +G + D A S G + R++
Sbjct: 96 ENVAFPLREHTRLSEEEIREIVLEKLEA--------VGLRGAE-DLYPAELSGGMKKRVA 146
Query: 270 LGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L + L DP+LLL DEPT LD D I L+ LG + ++++HD +
Sbjct: 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG---LTSIMVTHDLDTAFAI 203
Query: 323 CTKIV 327
+I
Sbjct: 204 ADRIA 208
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 7e-17
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 37/227 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG-----QEEPDSG 152
++L +++ Y LKD++ ++ KGE L+G +G GK+T LR++ PD G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
V+ + + + + R V F I + + L
Sbjct: 61 EVLLDGKD---IYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLR----------L 107
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA-SFSSGWQMRMSLG 271
G L E LD +V + + + + DRL A S G Q R+ L
Sbjct: 108 HGIKLKEE--------------LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153
Query: 272 KILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
+ L +P++LLLDEPT+ LD IE L L K++ +VI++H+
Sbjct: 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAEL-KKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 7e-17
Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 36/241 (14%)
Query: 384 RASSAEKKL-ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE---DRLL 439
RA+ A ++L E LQ E I+ P K + + P RG + + + F Y D+
Sbjct: 303 RAAGAAERLIELLQAEPDIKAPAHPKTLPV--PLRGE-----IEFEQVNFAYPARPDQPA 355
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---PNYFEQN 496
+ NLT+ GE A++GP+G GKSTL +L++ P+ G +LL ++ P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415
Query: 497 QA-----------EALD------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
A ++ D T E V AA + L + + +R
Sbjct: 416 MALVPQDPVLFAASVMENIRYGRPDATD-EEVEAAARAAHAHEFISALPE-GYDTYLGER 473
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE-YKG-TVITVS 597
V+ LSGG++ R+A + ++K + +L+LDE T+ LD S++++++A+ KG T + ++
Sbjct: 474 GVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIA 532
Query: 598 H 598
H
Sbjct: 533 H 533
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 8e-17
Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 39/219 (17%)
Query: 424 VVTIKNLEFGYEDRL-----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
++ ++N+ + + +L I +GE IIG +G GKSTLL+LI LE+P
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 479 GEVLLGEHNV--LPNY----FEQN-----QAEALDLDKTVLETVAEAAEDWRID------ 521
G V + ++ L Q Q L +TV E VA E +
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ 120
Query: 522 ------DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
++ GL +D DR + LSGG+K R+A + + +L+ DE T+ LD
Sbjct: 121 RVAELLELVGL-------SDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
Query: 576 IPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
+ E+L++ E T++ ++H+ VK+I +RV
Sbjct: 174 PETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRV 212
|
Length = 339 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 8e-17
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 61/250 (24%)
Query: 397 EEEQIEKPFQRKQMKIRFPERGRSG-----RSVVTIKNLEFGYEDRLLFNRANLTIERGE 451
E + K ++ + +S R V +K + + TIE+GE
Sbjct: 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGI-------------SFTIEKGE 48
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEHNVLPNYFEQN------------QA 498
IGPNG GK+T LK++ GL +P GEV + G +P +++ Q
Sbjct: 49 IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL---VP--WKRRKKFLRRIGVVFGQK 103
Query: 499 EALDLDKTVLETVAEAAEDWRIDD--IKGLLGRCNFKADMLD---------RKVSLLSGG 547
L D V+++ A + + K L +++LD R++SL G
Sbjct: 104 TQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDEL---SELLDLEELLDTPVRQLSL---G 157
Query: 548 E--KARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVITVSHDRY 601
+ +A +A + +P +L LDEPT LD+ ++E L+E E TV+ SH
Sbjct: 158 QRMRAEIA-AALLHEPE-ILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK 215
Query: 602 FVKQIVNRVV 611
++ + RV+
Sbjct: 216 DIEALARRVL 225
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 9e-17
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 52/211 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
++LEN+SK Y G L V+ ++K+GE L+G +G GKTT LR+IAG E P SG
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 153 -----NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
N+ K + F Q + + TV E AF ++ K E ++ E+
Sbjct: 61 GKDITNLPPHKRPVNTVF--QNYALFPHLTVFENI--AFGLRLKKLPKAEIKERVAEA-- 114
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+DL+ L+ + +R + S G Q R
Sbjct: 115 --LDLVQ--LEGY--------------------------------ANRKPSQLSGGQQQR 138
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298
+++ + L+ +P +LLLDEP LDL + +
Sbjct: 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDM 169
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 9e-17
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 40/228 (17%)
Query: 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---KSNMKI 163
Y+ V LK +++ ++KGE VG +G NGAGKTT L+I++G +P SG V A +
Sbjct: 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRK 90
Query: 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223
FL + V +T ++ L +D L+ + +DL
Sbjct: 91 KFLRRIGVVFGQKT-------------QLWWDL--------PVIDSFYLLAAI---YDLP 126
Query: 224 QRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283
+ + LD L +++ L L D V S G +MR + LL +P++L L
Sbjct: 127 PARFKK-RLDEL-SELLDLEELL-------DTPVRQLSLGQRMRAEIAAALLHEPEILFL 177
Query: 284 DEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
DEPT LD+ E +L+ Y ++ +++ SH ++ L +++
Sbjct: 178 DEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL 225
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-16
Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 24/216 (11%)
Query: 411 KIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ R P ++V +L D L I GE I+GPNG GK+T KL+
Sbjct: 327 EERPPRDESERETLVEYPDLTKKLGDFSLEVEGG-EIYEGEVIGIVGPNGIGKTTFAKLL 385
Query: 471 MGLEKPRGGEVLLGEH-NVLPNYFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIK 524
G+ KP GEV + P Y + + D TV + + +D ++ + IK
Sbjct: 386 AGVLKPDEGEVDPELKISYKPQYIKPDY------DGTVEDLLRSITDDLGSSYYKSEIIK 439
Query: 525 GL-LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
L L R +LD+ V LSGGE R+A + + + L +LDEP+ HLD+ + +
Sbjct: 440 PLQLER------LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA 493
Query: 584 EAI----SEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
+AI E + T + V HD Y + I +R++ +G
Sbjct: 494 KAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529
|
Length = 590 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-16
Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 37/222 (16%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
++N+ F R L + +LT G+ T +IG NG GKSTLLK++ + P GE+LL
Sbjct: 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72
Query: 486 HNVLP----------NYFEQN--QAEALDLDKTVLETVAEAAEDW-------------RI 520
+ Y Q AE + TV E VA W ++
Sbjct: 73 QPLESWSSKAFARKVAYLPQQLPAAEGM----TVRELVAIGRYPWHGALGRFGAADREKV 128
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK- 579
++ L+G R V LSGGE+ R + + S L+LDEPT+ LDI +
Sbjct: 129 EEAISLVGLKPLA----HRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184
Query: 580 EMLE--EAISEYKG-TVITVSHDRYFVKQIVNRVVEVKGSNL 618
++L +S+ +G TVI V HD + + +V ++G +
Sbjct: 185 DVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM 226
|
Length = 265 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-16
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++EN+S Y G T L +V+ +K GE V LVG NG+GK+T LR IAG +P SG ++
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 57/252 (22%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ N+SK+Y GV L DV+ ++KGE + L G +GAGKTT L+++ G P G V
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 157 AKSNM------KIAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
A ++ ++ L Q+F + RTV E A +E+ GK ER +
Sbjct: 62 AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENV--ALP--LEVRGKKER---EI 114
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+ V G L + L + PE S G
Sbjct: 115 QRRV------GAALRQVGLEHKA--------------DAFPE-------------QLSGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320
Q R+++ + ++ P LLL DEPT +LD D E + L K+ +++ +HD + +D
Sbjct: 142 EQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201
Query: 321 QLCTKIVETEMG 332
++ +++ + G
Sbjct: 202 RVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 55/202 (27%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++EN+S Y + L+ V+ EV++GE V L+G NGAGKTT L+ I G P SG +I
Sbjct: 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+A+ + IA++ + + TV E + R ++A E
Sbjct: 65 EDITGLPPHERAR--LGIAYVPEGRRIFPRLTVEENL--------LLGAYARRDKEAQER 114
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
++++ ++L P L + ++ + S G Q
Sbjct: 115 DLEEV---------YELF--------------------PRL---KERRNQRAGTLSGGEQ 142
Query: 266 MRMSLGKILLQDPDLLLLDEPT 287
+++ + L+ P LLLLDEP+
Sbjct: 143 QMLAIARALMSRPKLLLLDEPS 164
|
Length = 237 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-16
Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 56/226 (24%)
Query: 412 IRFPERG--RSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLL 467
+ FP + + +T+ N+ F Y D+ + +L I+ GEK A++G GCGKSTLL
Sbjct: 324 VTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
Query: 468 KLIMGLEKPRGGEVLLGEHNVLPNYFEQN--------------------------QAEAL 501
+L+ P+ GE+LL + +Y E A
Sbjct: 384 QLLTRAWDPQQGEILLNGQP-IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNAS 442
Query: 502 D------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555
D L + LE + E +D ++ G GR LSGGE+ RL
Sbjct: 443 DEALIEVLQQVGLEKLLE--DDKGLNAWLGEGGR-------------QLSGGEQRRLGIA 487
Query: 556 KFMVKPSTLLVLDEPTNHLDIPS-KEMLE--EAISEYKGTVITVSH 598
+ ++ + LL+LDEPT LD + +++LE ++ K TV+ ++H
Sbjct: 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK-TVLMITH 532
|
Length = 574 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-16
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 27/196 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
VT++N+ Y D ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG 63
Query: 485 EHNVLPNYFEQN--------QAEALDLDKTVLETV--------AEAAE-DWRIDDIKGLL 527
E + N Q+ AL +V E + A+ E + R++ + +L
Sbjct: 64 EKRM--NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVL 121
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
A +LDRK LSGG++ R+A + +V ++ +LDEP ++LD + + IS
Sbjct: 122 QL----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177
Query: 588 ----EYKGTVITVSHD 599
T+I V+HD
Sbjct: 178 RLHKRLGRTMIYVTHD 193
|
Length = 369 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-16
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 29/196 (14%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
++N+ + D + N + ++ GE I GP+GCGKSTLLK++ L P G +L
Sbjct: 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 487 NVL---PNYFEQN-----QAEALDLDKTVLETVAEAAEDWRI-------DDIKGLLGRCN 531
++ P + Q Q L D TV + + W+I L R
Sbjct: 70 DISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFP---WQIRNQQPDPAIFLDDLERFA 125
Query: 532 FKADMLDRKVSLLSGGEKARLAFCK---FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+L + ++ LSGGEK R++ + FM K +L+LDE T+ LD +K + E I
Sbjct: 126 LPDTILTKNIAELSGGEKQRISLIRNLQFMPK---VLLLDEITSALDESNKHNVNEIIHR 182
Query: 589 Y----KGTVITVSHDR 600
Y V+ V+HD+
Sbjct: 183 YVREQNIAVLWVTHDK 198
|
Length = 225 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-16
Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 56/262 (21%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L N+S +Y G LK+ + +GEKV ++G +G+GK+T L+++AG +P G++
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396
Query: 156 KAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ I+ L+Q + S T+R+ A + + E + AL+
Sbjct: 397 LNGVEIASLDEQALRETISVLTQRVHL-FSGTLRDNLRLANPDASD-----EELWAALQQ 450
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L L D L+ + + G RL S G +
Sbjct: 451 V----GLEKLLESA------------PDGLNTWLG----------EGGRRL----SGGER 480
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321
R++L + LL D L LLDEPT LD + L + + +++++H L++
Sbjct: 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLER 538
Query: 322 LCTKIVETEMGVSRTYEGNYSQ 343
+I+ + G EG +++
Sbjct: 539 -MDRIIVLDNG-KIIEEGTHAE 558
|
Length = 573 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 3e-16
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 25/187 (13%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ------- 497
T++ GE T ++GPNG GK+T L+++ GL +P G + +V+ E +
Sbjct: 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSD 85
Query: 498 AEALDLDKTVLETVA----------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
+ L T E + + R++++ LG ++LDR+V S G
Sbjct: 86 STGLYDRLTARENLEYFAGLYGLKGDELTA-RLEELADRLG----MEELLDRRVGGFSTG 140
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVK 604
+ ++A + +V +L+LDEPT LD+ + L E I + + ++ +H V+
Sbjct: 141 MRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE 200
Query: 605 QIVNRVV 611
++ +RVV
Sbjct: 201 RLCDRVV 207
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 3e-16
Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 42/248 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
+ +N+SK + T + +++ V K GL+G NGAGK+T L++I G P SG
Sbjct: 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG------ 55
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+I F + + + E + L +A +++
Sbjct: 56 ---EIIFDGHPWTRKDLHKI-----GSLIESPPLYENL--------TARENL-------- 91
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
K L D+++ +++ + T + G + FS G + R+ + LL P
Sbjct: 92 -------KVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHP 143
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
LL+LDEPTN LD I+ L + +Q + +++ SH + + QL I GV
Sbjct: 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203
Query: 336 TYEGNYSQ 343
Y+G ++
Sbjct: 204 -YQGKINK 210
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 47/211 (22%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ +++L Y D+ NL I + + TA+IGP+GCGKSTLL+ + M + R
Sbjct: 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE 66
Query: 479 GEVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAEAAE--D 517
GEVLL N+ PN F ++ + VA
Sbjct: 67 GEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF----------PMSIYDNVAYGLRLHG 116
Query: 518 WRIDDIKGLLGRCNFKA-------DMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDE 569
+ ++ ++ KA D L + LSGG++ RL + + VKP LL +DE
Sbjct: 117 IKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLL-MDE 175
Query: 570 PTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
PT+ LD S +EE I+E K T++ V+H
Sbjct: 176 PTSALDPISTLKIEELITELKKKYTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-16
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 23/181 (12%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDK 505
I GE I+GPNG GK+T +KL+ G+ KP G + + P Y D D
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISP------DYDG 416
Query: 506 TVLETVAEAAED------WRIDDIKGL-LGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558
TV + + A ++ + +K L L D+L+R V LSGGE R+A +
Sbjct: 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLE------DLLERPVDELSGGELQRVAIAAAL 470
Query: 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVK 614
+ + L +LDEP+ +LD+ + ++ + I + T + V HD Y + + +R++ +
Sbjct: 471 SREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530
Query: 615 G 615
G
Sbjct: 531 G 531
|
Length = 591 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 3e-16
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 28/177 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN----------VLPNY- 492
NLTI++GE ++IG +GCGKSTLL LI GL +P G V+L V NY
Sbjct: 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS 64
Query: 493 ------FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSG 546
+N A A+D VL ++++ +++ L+G + D++ LSG
Sbjct: 65 LLPWLTVRENIALAVD---RVLPDLSKSERRAIVEEHIALVGL----TEAADKRPGQLSG 117
Query: 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHD 599
G K R+A + + +L+LDEP LD ++ L+E + E++ TV+ V+HD
Sbjct: 118 GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 52/226 (23%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ I+NL Y ++ NL I + + TA+IGP+GCGKSTLL+ + M + R
Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 479 GEVLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLETV 511
G+VL ++ PN F N A L DK L+ +
Sbjct: 61 GKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEI 120
Query: 512 AEA----AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E A W D++K D L LSGG++ RL + + V+P LL
Sbjct: 121 VEESLKKAALW--DEVK----------DRLHDSALGLSGGQQQRLCIARALAVEPEVLL- 167
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRV 610
LDEPT+ LD + +EE I E K T++ V+H+ +I +R
Sbjct: 168 LDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRT 213
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 4e-16
Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 62/252 (24%)
Query: 95 SSGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++ +S +Y G L+ V++ V GE+V LVG +GAGK+T L ++ G +P G+
Sbjct: 319 APSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378
Query: 154 V---------IKAKSNMK-IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200
+ A S IA++ Q F ++ E ++
Sbjct: 379 IAVNGVPLADADADSWRDQIAWVPQHPFLFAGTI---------------------AENIR 417
Query: 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK-LMPELGFTADDGDRLVAS 259
A A D ++ + LD A + + L +G + G L
Sbjct: 418 LARPDASDAE------------IREALERAGLDEFVAALPQGLDTPIG---EGGAGL--- 459
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
S G R++L + L+D LLLLDEPT HLD +T +E L + V ++++H
Sbjct: 460 -SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTV--LLVTHR 516
Query: 316 RAFLDQLCTKIV 327
A L +IV
Sbjct: 517 LALA-ALADRIV 527
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 4e-16
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHNVLPNYFE----- 494
+ +LT+ GE A++G NG GKSTL+K++ G+ P GE+L+ G+ + +
Sbjct: 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84
Query: 495 -----QNQAEALDLDKTVLETVA---EAAEDWRIDDIKG-------LLGRCNFKADMLDR 539
Q + +L +V E + E + + D K LL R D D
Sbjct: 85 IATVHQELSLVPNL--SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDT 141
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITV 596
V LS ++ + + + + +L+LDEPT L + E L + I K +I +
Sbjct: 142 LVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYI 201
Query: 597 SHDRYFVKQIVNRVV 611
SH V +I +R+
Sbjct: 202 SHRLDEVFEIADRIT 216
|
Length = 500 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 4e-16
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 55/205 (26%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EK 475
+ ++NL D R+L + I+ G++ I GP+G GKS+L + + GL
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 476 PRGGEVLLGEHNVLPN--YFEQ-NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF 532
P G ++L LP Y E L W DD+
Sbjct: 61 PEGEDLLF-----LPQRPYLPLGTLREQL-------------IYPW--DDV--------- 91
Query: 533 KADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
LSGGE+ RLAF + + KP + LDE T+ LD S++ L + + E
Sbjct: 92 -----------LSGGEQQRLAFARLLLHKP-KFVFLDEATSALDEESEDRLYQLLKELGI 139
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGS 616
TVI+V H R + + +RV+++ G
Sbjct: 140 TVISVGH-RPSLWKFHDRVLDLDGE 163
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 5e-16
Identities = 65/220 (29%), Positives = 94/220 (42%), Gaps = 31/220 (14%)
Query: 413 RFPERGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469
+ E+ S + +K L G + + I +GE+ IIG NG GKSTLLKL
Sbjct: 15 IYHEKSYSLKK--RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKL 72
Query: 470 IMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV---------AEAAEDWRI 520
I G+ KP G+V + E D + T E + D ++
Sbjct: 73 IAGIYKPTSGKVKVTGKVAPL--IELGA--GFDPELTGRENIYLRGLILGLTRKEIDEKV 128
Query: 521 DDIKGL--LGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDIP 577
D+I LG D +D+ V S G ARLAF V+P LL LDE D
Sbjct: 129 DEIIEFAELG------DFIDQPVKTYSSGMYARLAFSVATHVEPDILL-LDEVLAVGDAA 181
Query: 578 SKEMLEEAISEYK---GTVITVSHDRYFVKQIVNRVVEVK 614
+E E ++E T++ VSHD +KQ +R + ++
Sbjct: 182 FQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLE 221
|
Length = 249 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 5e-16
Identities = 59/259 (22%), Positives = 115/259 (44%), Gaps = 69/259 (26%)
Query: 92 SSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149
+ ++ N+S +Y G L +V+ ++ GEKV ++G G+GK+T L+++ G +P
Sbjct: 458 PRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517
Query: 150 DSGNVIKAKSNMK----------IAFLSQE---FEVSMSRTVRE--EFMSAFKEEMEIAG 194
G+V+ +++ I ++ Q+ F T+R+ + + ++
Sbjct: 518 TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF----YGTLRDNIALGAPYADD----- 568
Query: 195 KLERVQKALESA-VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
E + +A E A V + + R D D+ + G
Sbjct: 569 --EEILRAAELAGVT--EFVRRHPDGLDMQ-------------------------IGERG 599
Query: 254 DRLVASFSSGWQMRM-SLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVP 308
L SG Q + +L + LL+DP +LLLDEPT+ +D + + L+ +L +
Sbjct: 600 RSL-----SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKT-- 652
Query: 309 MVIISHDRAFLDQLCTKIV 327
+V+++H + LD L +I+
Sbjct: 653 LVLVTHRTSLLD-LVDRII 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 6e-16
Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 30/193 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L++++GE A++G NG GKSTL+K++ GL +P GE+ + V + +A+ L
Sbjct: 24 SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK----SPRDAIRL 79
Query: 504 ------------DK-TVLETVA---EAAEDWRID------DIKGLLGRCNFKADMLDRKV 541
TV E + E ++ ID IK L R D D KV
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-PDAKV 138
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVSH 598
+ LS GE+ R+ K + + + LL+LDEPT L + L E + T+I ++H
Sbjct: 139 ADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198
Query: 599 DRYFVKQIVNRVV 611
V I +RV
Sbjct: 199 KLKEVMAIADRVT 211
|
Length = 501 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 7e-16
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 34/216 (15%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ + D A +L++ +GE IIG +G GKSTL++ I GLE+P G
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
Query: 480 EVLL-GEHNVLPNYFEQNQAEA----------LDLDKTVLETVAEAAEDW---------R 519
VL+ G L + E +A L +TV E VA E R
Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER 120
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
+ ++ L+G D D + LSGG+K R+ + + +L+ DE T+ LD P
Sbjct: 121 VLELLELVGL----EDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALD-PET 175
Query: 580 -----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
+L + E T++ ++H+ VK+I +RV
Sbjct: 176 TQSILALLRDINRELGLTIVLITHEMEVVKRICDRV 211
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 7e-16
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 51/229 (22%)
Query: 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL Y + + +L+I GE A+IGP+G GKSTLL+ + GL +P G VL+
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 485 EHNV--LPNYFEQN---------QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF- 532
++ L + Q L +VLE V + G LGR +
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENV-----------LSGRLGRRSTW 110
Query: 533 --------------------KADMLD---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
+ +LD ++ LSGG++ R+A + +++ L++ DE
Sbjct: 111 RSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 570 PTNHLD-IPSKEMLE--EAISEYKG-TVITVSHDRYFVKQIVNRVVEVK 614
P LD S+++++ + I+ +G TVI H ++ +R+V +K
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK 219
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 8e-16
Identities = 65/328 (19%), Positives = 125/328 (38%), Gaps = 79/328 (24%)
Query: 15 FSTLQPRFT-PFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVESLFSSS 73
F+ L F P K R+ + +
Sbjct: 415 FNMLAGYFISPITRLSQLWTDFQQAKVALERL---------------------GDILDTP 453
Query: 74 ADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGV 131
++ +K + + ++ EN+S Y VL+D++ E+ GEKV +VG
Sbjct: 454 PEQEGDKTLIHL------PKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGR 507
Query: 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREE 181
+G+GK+T L+++ G +P G ++ ++ + ++ Q+ S ++R E
Sbjct: 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD-PFLFSGSIR-E 565
Query: 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241
++ E E + +A + A EF + + DT
Sbjct: 566 NIALGNPEA----TDEEIIEAAQLAG---------AHEF----IENLPMGYDT------- 601
Query: 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY 301
+G A+ S G + R++L + LL P +LLLDE T+ LD +T +
Sbjct: 602 ---PVGEGG-------ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 302 LGK--QDVPMVIISHDRAFLDQLCTKIV 327
L + Q ++II+H + + + +I+
Sbjct: 652 LLQILQGRTVIIIAHRLSTI-RSADRII 678
|
Length = 709 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 31/217 (14%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSNMKIAFLSQE 169
+LK V VK+GE ++G NG+GK+T I G E G ++ ++
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL------- 71
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
E+S R AF+ +EI G L +A++ +R A+
Sbjct: 72 -ELSPDERARAGIFLAFQYPVEIPGV--TNSDFLRAAMNA--------------RRGARG 114
Query: 230 VNLDTLDAKVSKLMPELGFTADDGDRLV-ASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
+ + + ++ + LG + +R V FS G + R + ++LL +P L +LDEP +
Sbjct: 115 ILPEFIK-ELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 289 HLDLDTIEWL-EG--YLGKQDVPMVIISHDRAFLDQL 322
LD+D ++ + EG L ++ ++II+H + LD +
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI 210
|
Length = 251 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 1e-15
Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 26/165 (15%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+ NL Y + +L + +GE T ++G NG GK+TLLK +MGL + G + L
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61
Query: 486 HNV--LP---------NYFEQNQAEALDLDKTV---LETVAEA---AEDWRIDDIKGLLG 528
++ LP Y Q + L TV L T A D+I L
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIFPRL--TVEENLLTGLAALPRRSRKIPDEIYEL-- 117
Query: 529 RCNFKA--DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
F +ML R+ LSGG++ +LA + +V LL+LDEPT
Sbjct: 118 ---FPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 59/206 (28%), Positives = 88/206 (42%), Gaps = 55/206 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ N+ K Y V+ +++ V++GE GL+G NGAGKTT LR++ G PD+G++
Sbjct: 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVREE---FMSAFKEEMEIAGKLERVQKALES 205
+ ++ + Q + TVRE F F + A V L
Sbjct: 68 GEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG--LSAAAARALVPPLL-- 123
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
EF L+ KA DAKV +L S G +
Sbjct: 124 -------------EFAKLENKA--------DAKVGEL------------------SGGMK 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD 291
R++L + L+ DPD+L+LDEPT LD
Sbjct: 145 RRLTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 20/209 (9%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN--YFEQN----- 496
+ I +GE +G NG GKST LK++ GL P G+V + + + ++
Sbjct: 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVM 103
Query: 497 -QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL------LSGGEK 549
Q L D L+++ + I D R +F ++LD + L LS G++
Sbjct: 104 GQKLQLWWDLPALDSLEVLKLIYEIPD-DEFAERLDFLTEILDLEGFLKWPVRKLSLGQR 162
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQ 605
R ++ P +L LDEPT LD+ ++ + E + EY + TV+ +H +
Sbjct: 163 MRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIAT 222
Query: 606 IVNRVVEVKGSNLQDYAGDYNVCFTSFSP 634
+ +RV+ + L + G F P
Sbjct: 223 LCDRVLLIDQGQLV-FDGTLAQLQEQFGP 250
|
Length = 325 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 49/243 (20%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
LE +S S+ G L D++ V GE ++G NGAGKTT + +I G+ PD G+V
Sbjct: 4 YLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG 63
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ +IA Q+ V + TV E +E+A ++ A
Sbjct: 64 TDLTGLPEHQIARAGIGRKFQKPTVFENLTVF--------ENLELALPRDKSVFAS---- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L RL + ++ +++ +G AD+ DRL S G +
Sbjct: 112 ----LFFRL--------SAEEK-------DRIEEVLETIGL-ADEADRLAGLLSHGQKQW 151
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLD----TIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+ +G +L+QDP LLLLDEP + + T E L+ GK V V++ HD F+ +
Sbjct: 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSV--VVVEHDMEFVRSIA 209
Query: 324 TKI 326
K+
Sbjct: 210 DKV 212
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 29/231 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL- 483
+ + + Y L GE ++GP+G GKS+LL+++ LE PR G + +
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 484 GEHNVLPNYFEQNQAEALDLD-------------KTVLETVAEA-------AEDWRIDDI 523
G H L + TV E + EA ++D +
Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEML 582
+ LL R DR LSGG++ R+A + M++P LL DEPT LD +
Sbjct: 123 EKLLKRLRL-KPYADRYPLHLSGGQQQRVAIARALMMEPQVLL-FDEPTAALDPEITAQI 180
Query: 583 EEAISEYKGTVIT---VSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630
I E T IT V+H+ ++ +RVV ++ ++ + GD + CFT
Sbjct: 181 VSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ-GDAS-CFT 229
|
Length = 242 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 52/254 (20%)
Query: 101 ENISKSYKGV---------TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+S Y TVL +V+ +K GE V L+G +G GK+T R++ G E P
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 152 GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
GNV ++ + +++ R + AF+ ++++ Q ++ SAV+
Sbjct: 67 GNV---------SWRGE----PLAKLNRAQ-RKAFRRDIQMV-----FQDSI-SAVNPRK 106
Query: 212 LMGRLLDE----FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ ++ E L + + A+ S+++ + D+ S G R
Sbjct: 107 TVREIIREPLRHLLSLDKAERL-------ARASEMLRAVDLDDSVLDKRPPQLSGGQLQR 159
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+ L + L +P LL+LDE ++LDL I L+ + + I+HD +++ C
Sbjct: 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFC 219
Query: 324 T--------KIVET 329
+IVET
Sbjct: 220 QRVMVMDNGQIVET 233
|
Length = 268 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 65/254 (25%), Positives = 99/254 (38%), Gaps = 62/254 (24%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++EN+SK Y G LK++ + GE V ++G +GAGK+T LR I EP SG+++
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 157 A-------------KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEME-IAGKL-----E 197
K +I + Q + + TV E + L E
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
++AL L+ L + Q D L
Sbjct: 122 DKERALS-----------ALERVGLADKAYQRA--DQL---------------------- 146
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIIS- 313
S G Q R+++ + L Q PDL+L DEP LD T + + YL K+D VII+
Sbjct: 147 ---SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL 203
Query: 314 HDRAFLDQLCTKIV 327
H + +IV
Sbjct: 204 HQVDLAKKYADRIV 217
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-15
Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 41/226 (18%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-- 477
++ +KNL + +A + +++GE I+G +G GKS L K IMGL
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 478 ---GGEVLLGEHNVLP--------------NYFEQNQAEALDLDKTVLETVAEA------ 514
GGE+L ++L Q+ +L+ T+ + +AE
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120
Query: 515 --AEDWRIDDIKGLLGRCNFKADMLDRKVSL----LSGGEKARLAFCKFMVKPSTLLVLD 568
++ + LL +R++ LSGG + R+ + LL+ D
Sbjct: 121 GLSKKEAKERAIELLELVGIPDP--ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD 178
Query: 569 EPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
EPT LD+ + ++L+E E +I ++HD V +I +RV
Sbjct: 179 EPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRV 224
|
Length = 316 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 4e-15
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 60/231 (25%)
Query: 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++S V LEN+S S+ VL DV+ E+K G+ + L+G NGAGK+T +R++ G PD G
Sbjct: 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG- 59
Query: 154 VIKAKSNMKIAFLSQE--FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
VIK ++I ++ Q+ + ++ TV F+ L D
Sbjct: 60 VIKRNGKLRIGYVPQKLYLDTTLPLTV-NRFLR------------------LRPGTKKED 100
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
++ L ++ QA +L +DA + KL S G R+ L
Sbjct: 101 ILPAL--------KRVQAGHL--IDAPMQKL------------------SGGETQRVLLA 132
Query: 272 KILLQDPDLLLLDEPTNHLDL-------DTIEWLEGYLGKQDVPMVIISHD 315
+ LL P LL+LDEPT +D+ D I+ L L ++++SHD
Sbjct: 133 RALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD---CAVLMVSHD 180
|
Length = 251 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-15
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 39/216 (18%)
Query: 427 IKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+ + Y + LF+ L +GE ++GP+G GKS+LL+++ LE PR G +
Sbjct: 5 LNGINCFYGAHQALFD-ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL---- 59
Query: 486 HNVLPNYF----EQNQAEALDLDK---------------TVLETVAEA-------AEDWR 519
N+ N+F + +L + TV + + EA ++D
Sbjct: 60 -NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQA 118
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPS 578
+ + LL R DR LSGG++ R+A + M++P LL DEPT LD
Sbjct: 119 LARAEKLLERLRL-KPYADRFPLHLSGGQQQRVAIARALMMEPQVLL-FDEPTAALDPEI 176
Query: 579 KEMLEEAISEYKGTVIT---VSHDRYFVKQIVNRVV 611
+ I E T IT V+H+ ++ +RVV
Sbjct: 177 TAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV 212
|
Length = 242 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 4e-15
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-- 478
+ I +L Y + + +L IE GE A+IG +GCGK+TLL+ I G K G
Sbjct: 2 ACGGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 479 GEVLLGEHNV--LPNYFEQN-----QAEALDLDKTVLETVA---------EAAEDWRIDD 522
G + + + ++ P + ++ Q AL V + VA +A R+ D
Sbjct: 62 GRIAIADRDLTHAPPH-KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVAD 120
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
L+G + A + LSGG + R+A + + +L+LDEP + LD + +
Sbjct: 121 ALKLVGLGDAAA----HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176
Query: 583 EEAISEYKG-----TVITVSHDR 600
E I+ T++ V+HD+
Sbjct: 177 REEIAALHEELPELTILCVTHDQ 199
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 5e-15
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 37/204 (18%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
N++ S + + +++ + GE + + G NG GKTT LRI+AG PDSG
Sbjct: 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG------- 55
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
EV + T E + G L ++ L SA++++ +
Sbjct: 56 -----------EVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL-SALENLHFWAAIHGG 103
Query: 220 FDLLQRKA-QAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
A AV L GF D A S+G Q R++L ++ L
Sbjct: 104 AQRTIEDALAAVGLT-------------GFE----DLPAAQLSAGQQRRLALARLWLSRA 146
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYL 302
L +LDEPT LD + L G L
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLL 170
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 5e-15
Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 103 ISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK 162
+ + + ++D+++E+ KGE VG +G NGAGK+T L+++ G P SG V + N K
Sbjct: 30 FHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV---RVNGK 86
Query: 163 IAFLSQEFEVSMSRTV-----REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
F +E + V + + + +E+ + + + +D + +L
Sbjct: 87 DPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAE--RLDFLTEIL 144
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
D L+ + + +L S G +MR L LL
Sbjct: 145 D----------------LEGFLKWPVRKL--------------SLGQRMRAELAAALLHP 174
Query: 278 PDLLLLDEPTNHLDLDTI------EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
P +L LDEPT + LD E+L+ Y ++ +++ +H + LC +++
Sbjct: 175 PKVLFLDEPT--VGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVL 228
|
Length = 325 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 6e-15
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 51/211 (24%)
Query: 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L ++S Y G VL V+ ++ GE+V ++G +G+GK+T L +AG +P G V
Sbjct: 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT 393
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLERVQKAL 203
+ + +++ +Q+ + TVRE A + + E+ LERV A
Sbjct: 394 LDGVPVSSLDQDEVRRRVSVCAQDAHL-FDTTVRENLRLARPDATDEELWAALERVGLA- 451
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
D + L D LDT+ + E G A S G
Sbjct: 452 -------DWLRALPD------------GLDTV-------LGEGG----------ARLSGG 475
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ R++L + LL D +LLLDEPT HLD +T
Sbjct: 476 ERQRLALARALLADAPILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 6e-15
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 51/204 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ L +SKSY V+ D+++ + +GE GL+G NGAGK+T R++ G PD G +
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 156 ------KAK-SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ-KALESAV 207
+A+ + + I + Q + TVRE + + G+ + + +E+ +
Sbjct: 65 GEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL--------VFGRYFGMSTREIEAVI 116
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L EF L+ KA D VA S G + R
Sbjct: 117 PS-------LLEFARLESKA--------------------------DVRVALLSGGMKRR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD 291
++L + L+ DP LL+LDEPT LD
Sbjct: 144 LTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 6e-15
Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 37/200 (18%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHNVLPNYFEQNQAEAL 501
A+ T+ TAI G +G GK+TL++LI GL +P GE++L G F+ + L
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR-----TLFDSRKGIFL 70
Query: 502 DLDKTVLETVAEAA---------------------EDWRI--DDIKGLLGRCNFKADMLD 538
+K + V + A + RI + + LLG +L
Sbjct: 71 PPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG----IGHLLG 126
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVI 594
R LSGGEK R+A + ++ LL++DEP LD P K LE +E+ ++
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186
Query: 595 TVSHDRYFVKQIVNRVVEVK 614
VSH V ++ +RVV ++
Sbjct: 187 YVSHSLQEVLRLADRVVVLE 206
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 6e-15
Identities = 64/218 (29%), Positives = 93/218 (42%), Gaps = 30/218 (13%)
Query: 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++L + Y + N N R + A+IGPNG GKSTL + G+ KP G VL
Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 483 L-GEHNVLPNYFE---------QNQAEALDLDKTVLETVA---------EAAEDWRIDDI 523
+ GE N E QN + + TV + +A E R+
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE--- 580
+LG ++ DR LSGGEK R+A + +LVLDEPT LD +
Sbjct: 122 LHMLGL----EELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177
Query: 581 -MLEEAISEYKGTVITVSHDRYFVKQIVNRV-VEVKGS 616
L + Y TVI +H V ++ + + V KG
Sbjct: 178 DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGR 215
|
Length = 277 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 7e-15
Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 56/208 (26%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KA 157
N+S G T+L DV+ ++ GE V ++G NGAGK+T LR ++G+ PDSG V +
Sbjct: 6 RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRP 65
Query: 158 KSNMK-------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
++ A L Q +S TV E+
Sbjct: 66 LADWSPAELARRRAVLPQHSSLSFPFTVE-----------EVVA---------------- 98
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
MGR +A+ L V+ + ++ R S G Q R+ L
Sbjct: 99 --MGRA----PHGLSRAEDDAL------VAAALAQVDLAH-LAGRDYPQLSGGEQQRVQL 145
Query: 271 GKILLQ------DPDLLLLDEPTNHLDL 292
++L Q P LLLDEPT+ LDL
Sbjct: 146 ARVLAQLWEPDGPPRWLLLDEPTSALDL 173
|
Length = 258 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 7e-15
Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 67/243 (27%)
Query: 113 LKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---------KAKSN 160
L D T ++ E G+ G +GAGK+T LR IAG E+PD G ++ + K N
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 161 M-----KIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ KI + Q++ + VRE F K E V + L
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNRED---RISVDELL---------- 116
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ LD L +R A S G + R++L +
Sbjct: 117 --------------DLLGLDHL-----------------LNRYPAQLSGGEKQRVALARA 145
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ----DVPMVIISHDRAFLDQLCTKIVET 329
L P+LLLLDEP + LD L L + ++P++ ++HD + + L +IV
Sbjct: 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVM 205
Query: 330 EMG 332
E G
Sbjct: 206 EDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 7e-15
Identities = 58/244 (23%), Positives = 95/244 (38%), Gaps = 65/244 (26%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KAKSNM----- 161
+++LK V VK+GE V +VG +G+GK+T L ++AG ++P SG V + +
Sbjct: 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82
Query: 162 ------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ F+ Q F + + T E +E+ G+
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALENVALP----LELRGESSA----------------- 121
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV---ASFSSGWQMRMSLGK 272
D + +AV L G RL A S G Q R++L +
Sbjct: 122 --DSRAGAKALLEAVGL--------------------GKRLTHYPAQLSGGEQQRVALAR 159
Query: 273 ILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328
PD+L DEPT +LD T + L ++ +V+++HD L C + +
Sbjct: 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ-LAARCDRQLR 218
Query: 329 TEMG 332
G
Sbjct: 219 LRSG 222
|
Length = 228 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 7e-15
Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 80/268 (29%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
S ++++N+ K + G TVL + EVK GE V ++G +G+GKTT LR I E+P++G +
Sbjct: 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 155 -----------IKAKSNM------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197
+ + + + F+ Q F + RTV E I G +
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENI---------IEGPVI 112
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+ E A A+ +L+ ++G +
Sbjct: 113 VKGEPKEEAT-----------------------------ARARELLAKVGLAGKE-TSYP 142
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMV 310
S G Q R+++ + L P+++L DEPT+ LD L+TI L ++ MV
Sbjct: 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR----QLAQEKRTMV 198
Query: 311 IISH---------DRA-FLDQLCTKIVE 328
I++H DRA F+DQ +IVE
Sbjct: 199 IVTHEMSFARDVADRAIFMDQ--GRIVE 224
|
Length = 250 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 7e-15
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 34/159 (21%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVL 482
VT+K+ +LL + + GE TAI+GP+G GKSTLL + G G GEVL
Sbjct: 11 VTVKSSPSKSGKQLL-KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL 69
Query: 483 LGEHNVLPNYFEQ-----NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
+ + F + Q + L TV ET+ AA+ ++G
Sbjct: 70 INGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK------LRG------------ 111
Query: 538 DRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLD 575
LSGGE+ R++ + + PS LL LDEPT+ LD
Sbjct: 112 ------LSGGERKRVSIALELVSNPS-LLFLDEPTSGLD 143
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 7e-15
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 27/194 (13%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
I N+ + +L++++GE ++GP+GCGK+TLL++I GLE+ G + G
Sbjct: 7 IDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR 66
Query: 487 NV--LP----NYFEQNQAEALDLDKTVLETVA-----------EAAEDWRIDDIKGLLGR 529
++ LP +Y Q+ AL + TV + +A E AE R+ ++ L+G
Sbjct: 67 DITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE--RVAELLDLVGL 124
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI--- 586
+ + LSGG++ R+A + + LL+LDEP + LD +E L I
Sbjct: 125 PGSE----RKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180
Query: 587 -SEYKGTVITVSHD 599
T I V+HD
Sbjct: 181 QRRLGVTTIMVTHD 194
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 8e-15
Identities = 74/303 (24%), Positives = 122/303 (40%), Gaps = 69/303 (22%)
Query: 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI----------------KNLEFGY 434
K+ER + +E+ ++ Q Q + E ++G V + +N
Sbjct: 129 KIERRKRKEERQREVQY-QAHVAEMEAAKAGMPGVYVNHDGNGGGPAIKDIHMENFSISV 187
Query: 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-----LIMGLEKPRGGEVLLGEHNV- 488
R L A++T+ G ++G NG GK+T L+ I G+ P+ ++L E V
Sbjct: 188 GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGI--PKNCQILHVEQEVV 245
Query: 489 ----------LPNYFEQNQ---AEA-LDLDKTVLETVAEAAED--------------WRI 520
L E+ Q EA L + LE E + R+
Sbjct: 246 GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRL 305
Query: 521 DDI----------------KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
++I +L +F +M + SGG + R+A + + L
Sbjct: 306 EEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDL 365
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGD 624
L+LDEPTNHLD+ + LE + ++ T I VSH R F+ +V ++ + G L Y GD
Sbjct: 366 LLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGD 425
Query: 625 YNV 627
Y+
Sbjct: 426 YDT 428
|
Length = 718 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 9e-15
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 29/199 (14%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGE 480
++ +KN+ L N TI +GE ++GP+GCGKSTLL ++G + GE
Sbjct: 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 481 VLLGEH--NVLPNYFEQNQAEALDLDK------TVLETVAEAAEDWRIDDIKGLLGRCNF 532
+ L E ++LP Q Q L D +V + + A +KG R
Sbjct: 62 LWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALP----ATLKGNARRNAA 115
Query: 533 KA--------DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
A + + LSGG++AR+A + ++ L+LDEP + LD+ ++ +
Sbjct: 116 NAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQ 175
Query: 585 AI-SEYKGT---VITVSHD 599
+ SE + + V+HD
Sbjct: 176 WVFSEVRAAGIPTVQVTHD 194
|
Length = 213 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 9e-15
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+ + ++S + TVL V V++G VGLVG NGAGKTT LR I G P +G V
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 155 ---IKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++A S + ++A + Q+ +S VR+ +E
Sbjct: 64 GDDVEALSARAASRRVASVPQDTSLSFEFDVRQ---------------------VVE--- 99
Query: 208 DDMDLMGRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
MGR FD +T A V + M G A DR V S S G +
Sbjct: 100 -----MGRTPHRSRFDTWT--------ETDRAAVERAMERTG-VAQFADRPVTSLSGGER 145
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLD 293
R+ L + L Q +LLLDEPT LD++
Sbjct: 146 QRVLLARALAQATPVLLLDEPTASLDIN 173
|
Length = 402 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 58/247 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ +EN+SKSY VL DV+ ++ KG ++G NGAGK+T L +++ + DSG +
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61
Query: 158 KSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ K++ L QE ++ TVR+ + F G+ Q L
Sbjct: 62 GLELTSTPSKELAKKLSILKQENHINSRLTVRD--LVGF-------GRFPYSQGRLTK-- 110
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+D ++ ++ L D DR + S G + R
Sbjct: 111 EDRRIINEAIEYLHL---------------------------EDLSDRYLDELSGGQRQR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
+ +L QD D +LLDEP N+LD + + L LGK +V++ HD F
Sbjct: 144 AFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKT---IVVVLHDINFAS 200
Query: 321 QLCTKIV 327
IV
Sbjct: 201 CYSDHIV 207
|
Length = 252 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 55/204 (26%), Positives = 86/204 (42%), Gaps = 48/204 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
++ EN+SK Y + DV +++GE + L+G +G+GKTT L++I EP SG + I
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 157 AKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ KI ++ Q+ + TV E A ++ K ++A E
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI--ATVPKLLGWDKERIKKRADEL-- 117
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+DL+G LD + R EL S G Q R
Sbjct: 118 --LDLVG--LDPSEYADRYPH----------------EL--------------SGGQQQR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD 291
+ + + L DP +LL+DEP LD
Sbjct: 144 VGVARALAADPPILLMDEPFGALD 167
|
Length = 309 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 1e-14
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--SG 152
G++++++ +Y TVL D++ E++ GE + L+G +G GKTT LR IAG + +G
Sbjct: 3 CGGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG 62
Query: 153 NVIKAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ A ++ +A L Q + + V + AF
Sbjct: 63 RIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNV--AF------------------ 102
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
L + + + D+ +R A A+ L L D L A S G
Sbjct: 103 ------GLRAQKMPKADIAERVADALKLVGL--------------GDAAAHLPAQLSGGM 142
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD 291
Q R+++ + + +PD+LLLDEP + LD
Sbjct: 143 QQRIAIARAIAIEPDVLLLDEPLSALD 169
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 1e-14
Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 25/230 (10%)
Query: 407 RKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKS 464
R PE R +T +N+ F Y + + + NL I+ GE I+GP+G GKS
Sbjct: 442 RSAGLAALPEL----RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKS 497
Query: 465 TLLKLIMGLEKPRGGEVLLGEHNVL---PNYFEQNQA----EALDLDKTVLETVAEA--- 514
TL KL+ L P+ G+VL+ ++ P + + E + +++ + +A
Sbjct: 498 TLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG 557
Query: 515 AEDWRIDDIKGLLGRCNFKADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567
A + L G +F +++ + K + LSGG++ R+A + +V +L+
Sbjct: 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIF 617
Query: 568 DEPTNHLDIPSKEMLEEAISEY-KG-TVITVSHDRYFVKQIVNRVVEVKG 615
DE T+ LD S+ ++ + E +G TVI ++H V+ +V KG
Sbjct: 618 DEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 1e-14
Identities = 74/270 (27%), Positives = 118/270 (43%), Gaps = 49/270 (18%)
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLL-FNR 442
A A K+ +L+ F R Q FP+ + ++N+ F Y+D
Sbjct: 291 TAQVAFNKIAKLELAPYKAD-FPRPQ---AFPDW-----KTLELRNVRFAYQDNAFHVGP 341
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
NLTI+RGE +IG NG GKSTL L+ GL +P+ GE+LL V AE L+
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV--------SAEQLE 393
Query: 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCN--------------FKADMLDRKVSL--LSG 546
+ + V ++ D + G G+ + K + D + S LS
Sbjct: 394 DYRKLFSAV--FSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLST 451
Query: 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS--KEMLEEAISEYKG---TVITVSHD-R 600
G+K RLA +++ +LVLDE D P+ +E + + K T+ +SHD
Sbjct: 452 GQKKRLALLLALLEERDILVLDEWAADQD-PAFRREFYQVLLPLLKEQGKTIFAISHDDH 510
Query: 601 YFV--KQIV----NRVVEVKGSNLQDYAGD 624
YF+ +++ ++ E+ G + A D
Sbjct: 511 YFIHADRLLEMRNGQLSELTGEERDETARD 540
|
Length = 546 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 2e-14
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 13/99 (13%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
++ +N+S SY + VLKDV+ +K GEKV +VG +G+GK+T L+++ +P SG +
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 155 --------IKAKSNMK-IAFLSQEFEVSMSRTVREEFMS 184
+ +S K IA++ Q+ + S T+RE +S
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFL-FSGTIRENILS 98
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 53/230 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+K+EN+SK +K LK+V+ EV++G+ ++G G+GK+ L IAG +PDSG ++
Sbjct: 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59
Query: 156 -KAKSNMK-----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
K +N+ I+++ Q + + TV + A+ + K E +K LE
Sbjct: 60 GKDITNLPPEKRDISYVPQNYALFPHMTVYKNI--AYGLKKRKVDKKEIERKVLE----- 112
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ +L LL RK + S G Q R++
Sbjct: 113 ---IAEMLGIDHLLNRK------------------------------PETLSGGEQQRVA 139
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+ + L+ +P +LLLDEP + LD+ T E L+ + V ++ ++HD
Sbjct: 140 IARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 57/251 (22%), Positives = 99/251 (39%), Gaps = 85/251 (33%)
Query: 98 VKLENISKSY---------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
++++N+ K + + V + V++ +K+GE +GLVG +G GK+T R+I G EE
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 149 PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
P SG ++ I LS KEE + ERV + LE
Sbjct: 65 PTSGEILFEG--KDITKLS-------------------KEE-----RRERVLELLE---- 94
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
++G + R S G + R+
Sbjct: 95 ------------------------------------KVGLPEEFLYRYPHELSGGQRQRI 118
Query: 269 SLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321
+ + L +P L++ DEP + LD L+ ++ L+ LG + + ISHD + +
Sbjct: 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG---LTYLFISHDLSVVRY 175
Query: 322 LCTKIVETEMG 332
+ +I +G
Sbjct: 176 ISDRIAVMYLG 186
|
Length = 268 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-14
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 25/207 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I N+ + + NL + G A++GP+G GKSTLL++I GLE+P G + L
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 485 EHNVLPNYFEQN------QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
+ + Q AL TV + +A +A R++++ L+
Sbjct: 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL 120
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKE----MLEE 584
DR + LSGG++ R+A + + V+P LL LDEP LD ++ L +
Sbjct: 121 EGLG----DRYPNQLSGGQRQRVALARALAVEPQVLL-LDEPFGALDAKVRKELRSWLRK 175
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVV 611
E T + V+HD+ ++ +R+V
Sbjct: 176 LHDEVHVTTVFVTHDQEEAMEVADRIV 202
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-14
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 57/164 (34%)
Query: 137 TTQLRIIAGQEEPDSGNVI-----------KAKSNMKIAFLSQEFEVSMSRTVREE-FMS 184
+T L++I G +P SG ++ + +I + Q+ ++ TVRE F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244
+E + R ++ALE
Sbjct: 61 LRDKEAD-----ARAEEALE---------------------------------------- 75
Query: 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
+G V + S G + R+++ + LL+ P LLLLDEPT
Sbjct: 76 RVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 54/220 (24%), Positives = 102/220 (46%), Gaps = 37/220 (16%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + +KNL + + + + +L ++ GE AIIGP+G GK+TLL+ I LE+P G +
Sbjct: 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 483 LGEHNV---LPNYFEQNQAEALDLD-------------KTVLETVAEA-------AEDWR 519
+G+ + ++ L +TVLE + E ++
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEA 121
Query: 520 IDDIKGLLGRCNF--KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
+ LL + K R+ LSGG++ R+A + + +++ DEPT+ LD
Sbjct: 122 TARARELLAKVGLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALD-- 176
Query: 578 SKEMLEE------AISEYKGTVITVSHDRYFVKQIVNRVV 611
E++ E +++ K T++ V+H+ F + + +R +
Sbjct: 177 -PELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAI 215
|
Length = 250 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-14
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 39/216 (18%)
Query: 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL----------- 483
+ + + + ++ GE IIGP+G GKSTL +L++G+ P G V L
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406
Query: 484 --GEH-NVLPNYFE-------QNQAE-ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF 532
G H LP E +N A + D E V EAA R+ + L+ R
Sbjct: 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADP---EKVIEAA---RLAGVHELILRL-- 458
Query: 533 KADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
D ++ + LSGG++ R+A + + L+VLDEP ++LD + L AI
Sbjct: 459 -PQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA 517
Query: 589 YK---GTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
K GTV+ ++H R V++++ ++ + +
Sbjct: 518 AKARGGTVVVIAH-RPSALASVDKILVLQDGRIAAF 552
|
Length = 580 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-14
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 50/202 (24%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI----- 155
+N++K+YKG V++DV+ V GE VGL+G NGAGKTT ++ G D+GN+I
Sbjct: 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDED 66
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
A++ I +L QE + +V + M+ ++I L Q+
Sbjct: 67 ISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV----LQIRDDLSAEQRE------- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
D L++EF + L +G S S G + R+
Sbjct: 116 -DRANELMEEFH-----------------IEHLRDSMG----------QSLSGGERRRVE 147
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
+ + L +P +LLDEP +D
Sbjct: 148 IARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-14
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 45/181 (24%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG----EHNVLPN------YFEQNQAE 499
GE ++GPNG GKSTLL + G+ G + E Y Q Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTP 83
Query: 500 ALDL-----------DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
+ DKT E ++D+ G L D L R + LSGGE
Sbjct: 84 PFAMPVWHYLTLHQPDKTRTE---------LLNDVAGALAL----DDKLGRSTNQLSGGE 130
Query: 549 --KARLAFCKFMVKP-----STLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSH 598
+ RLA + P LL+LDEP N LD+ + L+ +S ++ SH
Sbjct: 131 WQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSH 190
Query: 599 D 599
D
Sbjct: 191 D 191
|
Length = 248 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 23/186 (12%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQ-----NQ 497
E GE T ++G NG GK+TLL++I L P G+V + + + P++ +
Sbjct: 23 FEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFG 82
Query: 498 AEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
L T E + A RI ++ L + LDR+V S G
Sbjct: 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL----LEYLDRRVGEFSTGM 138
Query: 549 KARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQ 605
K ++A + +V ++LVLDEPT+ LDI ++ + I + K VI SH V+
Sbjct: 139 KQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEA 198
Query: 606 IVNRVV 611
+ +RV+
Sbjct: 199 LCDRVI 204
|
Length = 245 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-14
Identities = 60/182 (32%), Positives = 84/182 (46%), Gaps = 29/182 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE---- 499
L ++RGE AI+GP+G GKSTLL ++ GL+ P GEV L L E +A
Sbjct: 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQP-LHKLDEDARAALRAR 88
Query: 500 ---------ALDLDKTVLETVA-------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
L + T LE VA E++ D R K LL L +
Sbjct: 89 HVGFVFQSFHLIPNLTALENVALPLELRGESSADSR-AGAKALLEAVGL-GKRLTHYPAQ 146
Query: 544 LSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVITVSH 598
LSGGE+ R+A + F +P +L DEPT +LD + + +L E T++ V+H
Sbjct: 147 LSGGEQQRVALARAFAGRPD-VLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205
Query: 599 DR 600
D
Sbjct: 206 DP 207
|
Length = 228 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 33/170 (19%)
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE--------HN-----VLPNY-------FE 494
++GP+GCGK+TLL+L+ G E+P G ++L H V +Y E
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 495 QNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554
+N A L + K + R+ + L+ + DRK LSGG++ R+A
Sbjct: 61 ENVAFGLKMRKVPRAEIKP-----RVLEALRLVQL----EEFADRKPHQLSGGQQQRVAL 111
Query: 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLE---EAISEYKG-TVITVSHDR 600
+ +V +L+LDEP + LD ++ ++ + I E G T + V+HD+
Sbjct: 112 ARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ 161
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-14
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 54/246 (21%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
L+ +S S+ G L D+++ V GE L+G NGAGKTT + +I G+ P G V
Sbjct: 7 YLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66
Query: 155 ---IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ +IA Q+ V + TVR E +E+A ++ A
Sbjct: 67 DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVR--------ENLELALNRDKSVFAS--- 115
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT--ADDGDRLVASFSSGW 264
L RL E + +D L L D+ DRL A S G
Sbjct: 116 -----LFARLRAE--------ERRRIDEL----------LATIGLGDERDRLAALLSHGQ 152
Query: 265 QMRMSLGKILLQDPDLLLLDEP----TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
+ + +G +L QDP LLLLDEP T+ T E L+ GK + +++ HD F+
Sbjct: 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSI--LVVEHDMGFVR 210
Query: 321 QLCTKI 326
++ K+
Sbjct: 211 EIADKV 216
|
Length = 249 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 4e-14
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 56/213 (26%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
V+ +N++ Y G VL+D++ ++ GE V LVG +G+GK+T + +I + DSG +
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKLERVQK 201
S +I +SQ+ F + TV E IA G+ ++
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLF----NDTVAE----------NIAYGRPGATRE 106
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
+E A A+A N + +PE G+ G+R V S
Sbjct: 107 EVEEA--------------------ARAANAHEFIME----LPE-GYDTVIGERGV-KLS 140
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
G + R+++ + LL+DP +L+LDE T+ LD ++
Sbjct: 141 GGQRQRIAIARALLKDPPILILDEATSALDTES 173
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 4e-14
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 30/181 (16%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LL 483
+ + + Y D+++ N + TI RGE ++GPNG GKST+ ++++G+ P G++ +L
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 484 GEH------------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKG 525
GE V+P Q + LD + TV E + + + I
Sbjct: 65 GEPVPSRARLARVAIGVVP------QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS 118
Query: 526 LL--GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
LL R KAD+ +V+LLSGG K RL + ++ LL+LDEPT LD ++ ++
Sbjct: 119 LLEFARLESKADV---RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175
Query: 584 E 584
E
Sbjct: 176 E 176
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 58/193 (30%), Positives = 86/193 (44%), Gaps = 31/193 (16%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501
AN T+ TA+ GP+G GK++L+ +I GL +P G + L VL + + L
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGR-VL---VDAEKGIFL 71
Query: 502 DLDK----------------TV---LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
+K TV L + + D + LLG +LDR
Sbjct: 72 PPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG----IEHLLDRYPG 127
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVITVSH 598
LSGGEK R+A + ++ LL++DEP LD+P K LE E ++ VSH
Sbjct: 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH 187
Query: 599 DRYFVKQIVNRVV 611
V ++ +RVV
Sbjct: 188 SLDEVLRLADRVV 200
|
Length = 352 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-14
Identities = 58/203 (28%), Positives = 83/203 (40%), Gaps = 52/203 (25%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-- 156
++NI K + T LKD++ VKKGE V L+G +G GKTT LRIIAG E +G + +
Sbjct: 6 SIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG 65
Query: 157 --------AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
K + I F Q + + + TV + A+ + G+ E ++ E
Sbjct: 66 RDITRLPPQKRDYGIVF--QSYALFPNLTVADNI--AYGLKNRGMGRAEVAERVAE---- 117
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
LLD L + S G Q R+
Sbjct: 118 -------LLDLVGLP---------------------------GSERKYPGQLSGGQQQRV 143
Query: 269 SLGKILLQDPDLLLLDEPTNHLD 291
+L + L P LLLLDEP + LD
Sbjct: 144 ALARALATSPGLLLLDEPLSALD 166
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 6e-14
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 45/188 (23%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------------- 490
T G+ I+GPNG GKST LK++ G KP LG + P
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN-----LGRYEDPPSWDEVIKRFRGTELQ 150
Query: 491 NYFEQNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
NYF++ L + V E + + E + D++ LG N +
Sbjct: 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLEN----V 206
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA-----ISEYKG 591
LDR VS LSGGE R+A +++ + + DEP+++LDI ++ L A ++E
Sbjct: 207 LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDI--RQRLNAARVIRELAEDGK 264
Query: 592 TVITVSHD 599
VI V HD
Sbjct: 265 YVIVVEHD 272
|
Length = 591 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 6e-14
Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 54/214 (25%)
Query: 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ ++NL Y + + LF+ ++ I + TA IGP+GCGKSTLL+ M ++ R
Sbjct: 26 LEVRNLNLFYGDKQALFD-ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIE 84
Query: 479 GEVLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLETV 511
GE+ L N+ PN F +N L L ++ VL+
Sbjct: 85 GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEA 144
Query: 512 AE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E A W D++K D L LSGG++ RL + + ++P LL
Sbjct: 145 VERSLRGAALW--DEVK----------DRLHENAFGLSGGQQQRLVIARAIAIEPEVLL- 191
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
LDEPT+ LD S +EE I+E K T++ V+H
Sbjct: 192 LDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 7e-14
Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 53/232 (22%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ EN++ SY + VLKD+ + +K GE V +VG GAGKTT + ++ +P G +
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 155 ---------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K+ +M I + Q+ S T+ E
Sbjct: 63 DGIDIRDISRKSLRSM-IGVVLQD-TFLFSGTIMENI----------------------- 97
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK-LMPELGFTADDGDRLVASFSSGW 264
+GR + + A+ K+ LG ++G L S G
Sbjct: 98 ------RLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG---ENGGNL----SQGE 144
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314
+ +++ + +L+DP +L+LDE T+++D +T + ++ L K + +II+H
Sbjct: 145 RQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAH 196
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 8e-14
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 45/211 (21%)
Query: 424 VVTIKNLE--FGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
V++I+NL +G+ ++LF+ NL I GE + GP+G GK+TLL LI GL +
Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFD-INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE 59
Query: 479 GEV-LLGE-----------------------HNVLPNY-FEQNQAEALDL-DKTVLETVA 512
G + +LG+ HN+L QN AL+L +
Sbjct: 60 GSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEAR 119
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
E A + GL ++ LSGG+K R+A + +V L++ DEPT
Sbjct: 120 ERARAML--EAVGLGDHLDYYPHN-------LSGGQKQRVAIARALVHRPKLVLADEPTA 170
Query: 573 HLDIPSK----EMLEEAISEYKGTVITVSHD 599
LD S E++++ E T++ V+HD
Sbjct: 171 ALDSKSGRDVVELMQKLAREQGCTILIVTHD 201
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 8e-14
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQ----NQA 498
GE + G +G GKSTLLKLI G+E+P G++ H++ +P Q Q
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
Query: 499 EALDLDKTVLETVA-----EAAEDWRIDDIKGLLGRCNFKADMLDRKVSL---LSGGEKA 550
L +D+TV + VA A DDI+ + K +LD+ + LSGGE+
Sbjct: 88 HHLLMDRTVYDNVAIPLIIAGASG---DDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQ 144
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIV 607
R+ + +V +L+ DEPT +LD E + E+ TV+ +HD + +
Sbjct: 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRS 204
Query: 608 NRVV 611
R++
Sbjct: 205 YRML 208
|
Length = 222 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 9e-14
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+++E ++KS+ + ++++EV GE GL+G NGAGKTT R+I G EP G +
Sbjct: 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 155 -----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG-KLERVQKALESAVD 208
+ + +I +L +E + TV ++ K E+ G +QK L+
Sbjct: 61 WNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ----LKYLAELKGMPKAEIQKKLQ---- 112
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L+R L+ + K K + S G Q ++
Sbjct: 113 ------------AWLER------LEIVGKKTKK---------------IKELSKGNQQKI 139
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLE 299
++ +P+LL+LDEP + LD +E L+
Sbjct: 140 QFISAVIHEPELLILDEPFSGLDPVNVELLK 170
|
Length = 300 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-13
Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 34/242 (14%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L I+ Y L D+T + +GE + L+G +GAGK++ LR++ E P SG + A
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ + + + R +R F ++ + L + +E+ ++G L
Sbjct: 63 GNHFDFSKTPSDKAI---RDLRRNVGMVF-QQYNLWPHLTVQENLIEAP---CRVLG-LS 114
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+ Q A+A KL+ L DR S G Q R+++ + L+ +
Sbjct: 115 KD----QALARAE----------KLLKRLRL-KPYADRYPLHLSGGQQQRVAIARALMME 159
Query: 278 PDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330
P +LL DEPT LD + I+ L + VI++H+ + +++V E
Sbjct: 160 PQVLLFDEPTAALDPEITAQIVSIIKELAE----TGITQVIVTHEVEVARKTASRVVYME 215
Query: 331 MG 332
G
Sbjct: 216 NG 217
|
Length = 242 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 36/206 (17%)
Query: 425 VTIKNLEFGYEDRLLFNR-----ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+T + +E Y+ + F R N++I G AIIG G GKSTLL+ + GL +P G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDKTV------------LETVAE----------AAED 517
V +GE + + + L K V ETV + +E+
Sbjct: 63 TVTIGERVITA---GKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE 119
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
+ ++ ++L R LSGG+ R+A + +LVLDEPT LD P
Sbjct: 120 DAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD-P 178
Query: 578 S--KEMLE--EAISEYKG-TVITVSH 598
KEM+E + + KG T + V+H
Sbjct: 179 KGRKEMMEMFYKLHKEKGLTTVLVTH 204
|
Length = 290 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 49/205 (23%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-I 155
++ EN++K Y G + ++ E+ KGE + L+G +G+GKTT +++I EP SG + I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 156 KAKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ KI ++ Q+ + TV +E + + KL + K
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTV--------EENIALVPKLLKWPKE---- 108
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ + +A D L A V + F DR S G Q
Sbjct: 109 -----------------KIRERA---DELLALVG--LDPAEF----ADRYPHELSGGQQQ 142
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+ + + L DP LLL+DEP LD
Sbjct: 143 RVGVARALAADPPLLLMDEPFGALD 167
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 22/198 (11%)
Query: 423 SVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++ ++N+ F Y + + I GE AI+G NG GKST+ K++ GL KP+ GE
Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65
Query: 481 VLL-GEHNVLPNYFE---------QNQAEALDLDKTVLETVAEAAEDWRID--DIKGLLG 528
+ + G N E QN + TV + +A E+ ++ +K ++
Sbjct: 66 IKIDGITISKENLKEIRKKIGIIFQNPDNQF-IGATVEDDIAFGLENKKVPPKKMKDIID 124
Query: 529 RCNFKADM---LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
K M LD++ LSGG+K R+A + +++ DE T+ LD K +++
Sbjct: 125 DLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKI 184
Query: 586 ISEY----KGTVITVSHD 599
+ + K T+I+++HD
Sbjct: 185 MVDLRKTRKKTLISITHD 202
|
Length = 271 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 63/206 (30%), Positives = 92/206 (44%), Gaps = 36/206 (17%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPR 477
+ ++NL F Y NL I + + TA IGP+GCGKSTLL+ L
Sbjct: 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAE- 72
Query: 478 GGEVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAEAAEDW 518
GE+LL N+L P F + + + + E ++ A D
Sbjct: 73 -GEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE 131
Query: 519 RIDDI--KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLD 575
R++ K L N D L + LSGG++ RL + ++P LL LDEP + LD
Sbjct: 132 RVEWALTKAAL--WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLL-LDEPCSALD 188
Query: 576 IPSKEMLEEAISEYKG--TVITVSHD 599
S +EE I+E K TV+ V+H+
Sbjct: 189 PISTGRIEELITELKQDYTVVIVTHN 214
|
Length = 260 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 1e-13
Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 57/211 (27%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+NISK + + + L +V+ + GE G++G +GAGK+T +R I E P SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200
V+ ++ +I + Q F + SRTV + A +E+AG
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNV--ALP--LELAGT----- 112
Query: 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260
KA+ + A+V++L+ +G +D DR A
Sbjct: 113 ------------------------PKAE------IKARVTELLELVGL-SDKADRYPAQL 141
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+++ + L +P +LL DE T+ LD
Sbjct: 142 SGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-13
Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 413 RFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
R ER R G V +N+ F Y DR + +L IE GE A++G +G GKSTL+ LI
Sbjct: 322 RAIERAR-GD--VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378
Query: 471 MGLEKPRGGEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAA-EDWRIDD 522
+P G++LL H++ L + + + T+ +A E +
Sbjct: 379 PRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE 438
Query: 523 IKGLLGRCNFKADMLDR-----------KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
I+ L + D +D+ LLSGG++ RLA + ++K + +L+LDE T
Sbjct: 439 IERALAAAYAQ-DFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT 497
Query: 572 NHLDIPSKEMLEEAISE-YKG-TVITVSH 598
+ LD S+ +++ A+ +G T + ++H
Sbjct: 498 SALDNESERLVQAALERLMQGRTTLVIAH 526
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 28/208 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y D + + RGE ++GPNG GK+T +K++ L KP G +
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60
Query: 485 EHNVL--PNYFEQN-----QAEALDLDKTVLETV-----------AEAAEDWRIDDIKGL 526
H+V+ P + Q ++D + T E + AE E RID++
Sbjct: 61 GHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE--RIDELLDF 118
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
+G DR V SGG + RL + +V +L LDEPT LD ++ + E I
Sbjct: 119 VGLLEAA----DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI 174
Query: 587 SEYKG----TVITVSHDRYFVKQIVNRV 610
+ K T++ +H +Q+ +RV
Sbjct: 175 EKLKEEFGMTILLTTHYMEEAEQLCDRV 202
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 36/191 (18%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYFE 494
++E+GE ++GPNG GK+T +++I+G+ P GEVL + LP
Sbjct: 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLP---- 76
Query: 495 QNQAEALDLDKTVLE-----------TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
+ L V++ EA RID+ L R ++ +++V
Sbjct: 77 --EERGLYPKMKVIDQLVYLAQLKGLKKEEARR--RIDE---WLERLEL-SEYANKRVEE 128
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDR 600
LS G + ++ F ++ LL+LDEP + LD + E+L++ I E TVI +H
Sbjct: 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM 188
Query: 601 YFVKQIVNRVV 611
V+++ +RV+
Sbjct: 189 ELVEELCDRVL 199
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-13
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 37/202 (18%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+ ++ G + +++ + GE + + G NG+GKTT LRI+AG P +G
Sbjct: 4 DELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG-------- 55
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
V ++ + + + G + K S ++++ +
Sbjct: 56 ----------RVLLNGGPLDFQRDSIARGLLYLGHAPGI-KTTLSVLENLRFWHADHSDE 104
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+ + A+ V L+ GF DR VA S+G Q R++L ++LL L
Sbjct: 105 QVEEALAR-VGLN-------------GF----EDRPVAQLSAGQQRRVALARLLLSGRPL 146
Query: 281 LLLDEPTNHLDLDTIEWLEGYL 302
+LDEPT LD + +
Sbjct: 147 WILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 30/172 (17%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEH------ 486
Y D+ + N + T+ GE ++GPNG GKST+ ++I+G+ P G++ +LG
Sbjct: 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110
Query: 487 ------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKGLL--GRCNF 532
V+P Q + LDL+ TV E + + + I LL R
Sbjct: 111 LARARIGVVP------QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES 164
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
KAD +VS LSGG K RL + ++ LL+LDEPT LD ++ ++ E
Sbjct: 165 KADA---RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWE 213
|
Length = 340 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 50/205 (24%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ V L N++K+Y V + KD+ ++ +GE V VG +G GK+T LR+IAG E+ SG++
Sbjct: 2 ASVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF 61
Query: 156 KAKSNMKIAFLSQEFEVS-MSRTVREEFMS-------AFKEEMEIAGKLERVQKA-LESA 206
+ M +V R V F S + E M KL +K +
Sbjct: 62 IGEKRMN--------DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQR 113
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
V+ + +L LL RK +A+ S G +
Sbjct: 114 VNQ---VAEVLQLAHLLDRKPKAL------------------------------SGGQRQ 140
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++G+ L+ +P + LLDEP ++LD
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 40/188 (21%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV- 481
+ + +N+E Y D+L+ + + ++RGE ++GPNG GK+T L++++GL P G +
Sbjct: 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 482 LLGEH------------NVLPNYFEQNQAEALDLDKTVLE-----------TVAEAAEDW 518
L GE V+P Q + LD D TV E + A A
Sbjct: 66 LCGEPVPSRARHARQRVGVVP------QFDNLDPDFTVRENLLVFGRYFGLSAAAARA-- 117
Query: 519 RIDDIKGLL--GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
+ LL + KAD KV LSGG K RL + +V +LVLDEPT LD
Sbjct: 118 ---LVPPLLEFAKLENKADA---KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171
Query: 577 PSKEMLEE 584
++ ++ E
Sbjct: 172 QARHLMWE 179
|
Length = 306 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 63/236 (26%)
Query: 420 SGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
SG + + + F Y L+ + +L IE GE AI+GP+G GKSTLL+L++G E P
Sbjct: 449 SGA--IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE 506
Query: 478 GGEVLLGEHNVLPNYFEQNQAEALDLDK-----------------TVLETVAEAA----- 515
G V +++ LD+ ++ E +A A
Sbjct: 507 SGSV----------FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLD 556
Query: 516 EDWRI-------DDIK----GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
E W +DI+ G+ ++ LSGG++ RL + +V+ +
Sbjct: 557 EAWEAARMAGLAEDIRAMPMGM-------HTVISEGGGTLSGGQRQRLLIARALVRKPRI 609
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH--------DRYFVKQIVNRVVE 612
L+ DE T+ LD ++ ++ E++ K T I ++H DR +V RVV+
Sbjct: 610 LLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLD-AGRVVQ 664
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 33/222 (14%)
Query: 423 SVVTIKNLEFGYEDRLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
S++ ++++ Y LF +L+IE GE ++G +GCGKSTL +L++GL
Sbjct: 1 SLLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60
Query: 474 EKPRGGEVLLGEHNVLPNYFEQNQA-------------EALDLDKTVLETVAEAAEDW-- 518
EKP G V ++ +Q +A A++ TV + + E
Sbjct: 61 EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS 120
Query: 519 -----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
+ I LL +++ D+ LSGG+ R+ + + L+VLDE ++
Sbjct: 121 LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSN 180
Query: 574 LDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
LD+ + E+L + + + ++HD V+ RV
Sbjct: 181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVA 222
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 49/223 (21%)
Query: 427 IKNLEFGYEDRLLFNR-----ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
I+NL Y + F + N+ IE GE +IG G GKSTL++ + GL KP G++
Sbjct: 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64
Query: 482 LLGEHNV-------------------LPNY--FEQNQAEALDL--------DKTVLETVA 512
++ ++ P Y FE+ + + ++ + V
Sbjct: 65 IIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVK 124
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
A +D D D+ LSGG+K R+A + +L+LDEPT
Sbjct: 125 RAMNIVGLD-----------YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTA 173
Query: 573 HLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVV 611
LD ++ + I EY T+I VSH V ++ +R++
Sbjct: 174 GLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII 216
|
Length = 287 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 37/209 (17%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
S ++V ++ + F +R +F+ +LT+ RG+ TAI+GP+G GK+TLL+LI G P G
Sbjct: 3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG 62
Query: 480 EVLLGEHNVLPNYFEQN------------QAEALDLDKTVLETVA-EAAEDWRIDDI--- 523
E+L N+ P Q+ AL D V + VA E ++
Sbjct: 63 EILFDGENI-PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH 121
Query: 524 ---------KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
GL G S LSGG R A + + L++ DEP
Sbjct: 122 STVMMKLEAVGLRGAAKLMP-------SELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
Query: 575 DIPSKEMLEEAISEYKG----TVITVSHD 599
D + +L + ISE T + VSHD
Sbjct: 175 DPITMGVLVKLISELNSALGVTCVVVSHD 203
|
Length = 269 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 39/207 (18%)
Query: 423 SVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+++ +KNL F Y +++ N + +++GE +IIG NG GKST ++LI GL + G
Sbjct: 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG 62
Query: 480 EV-----LLGEHNVLP-------------NYF-----EQNQAEALDLDKTVLETVAEAAE 516
++ LL E NV N F E + A L+ E + E
Sbjct: 63 QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE--- 119
Query: 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
R+++ L+G +FK +R+ + LSGG+K R+A + +++LDE T+ LD
Sbjct: 120 --RVNEALELVGMQDFK----EREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 577 PSKEMLEEAI----SEYKGTVITVSHD 599
+ L + I +Y+ TVI+++HD
Sbjct: 174 EGRLELIKTIKGIRDDYQMTVISITHD 200
|
Length = 279 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 29/198 (14%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V +KN+ + + + NLTI++G ++GP+GCGK+T+L+L+ GLEKP G++ +
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 485 EHNVLPNYFEQN------QAEALDLDKTVLETV-----------AEAAEDWRIDDIKGLL 527
+V +Q Q+ AL ++ E V E + R+ + L+
Sbjct: 67 GEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQ--RVKEALELV 124
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSKEMLEEAI 586
F+ DR V +SGG++ R+A + ++ KP LL DEP ++LD + + E I
Sbjct: 125 DLAGFE----DRYVDQISGGQQQRVALARALILKPKVLL-FDEPLSNLDANLRRSMREKI 179
Query: 587 SEYKG----TVITVSHDR 600
E + T + V+HD+
Sbjct: 180 RELQQQFNITSLYVTHDQ 197
|
Length = 351 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-13
Identities = 117/536 (21%), Positives = 222/536 (41%), Gaps = 122/536 (22%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
+L+ I K++ GV L V G + LVG NGAGK+T ++++ G D+G+
Sbjct: 6 QLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS----- 60
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
I +L +E + ++ +E + +E+ + +L + + +GR
Sbjct: 61 ----ILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL---------TIAENIFLGR--- 104
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
EF + ++ + A+ KL+ L D+LV S G Q + + K+L +
Sbjct: 105 EF---VNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQMVEIAKVLSFES 160
Query: 279 DLLLLDEPTNHL-DLDTIEWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
++++DEPT+ L D +T L Q +V ISH + ++C +
Sbjct: 161 KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVT-------- 212
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERL 395
V +I E++ ++ + LI + GR +L
Sbjct: 213 ---------VFRDGQFIA------EREVADLTE-DSLIEMM-----VGR---------KL 242
Query: 396 QEE-EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
+++ +++K ++K+ SG V ++ F T+ +GE
Sbjct: 243 EDQYPRLDKAPGEVRLKV----DNLSGPGV---NDVSF-------------TLRKGEILG 282
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-----------YF-EQNQAEALD 502
+ G G G++ L+K++ G G V L H V+ Y E + + L
Sbjct: 283 VSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342
Query: 503 LDKTVLETVA---------------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
L +V E ++ A E + D L N K +++ + LLSGG
Sbjct: 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF---NIKTPSMEQAIGLLSGG 399
Query: 548 EKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHD 599
+ ++A + M +P +L+LDEPT +D+ +K+ + + I+++K ++I VS +
Sbjct: 400 NQQKVAIARGLMTRPK-VLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
|
Length = 501 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 3e-13
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 20/187 (10%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L+F Y D+ L + + + G + G NG GK+TLLKLI GL P GE+L ++
Sbjct: 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 489 ---LPNYFEQ--------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD-M 536
L Y +Q L L + L + + I ++ L F + +
Sbjct: 66 KKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRL-----FSLEHL 120
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTV 593
+D LLS G+K ++A + + + L +LDEP LD S + I E++ G V
Sbjct: 121 IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 594 ITVSHDR 600
+ SH
Sbjct: 181 LLTSHQD 187
|
Length = 200 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 50/205 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ NI KS+ VL D++ ++ G+ V L+G +G+GKTT LRIIAG E SG++
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH 62
Query: 155 ------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ A+ + K+ F+ Q + + TV + AF + L R ++
Sbjct: 63 GTDVSRLHAR-DRKVGFVFQHYALFRHMTVFDNI--AFGLTV-----LPRRERP------ 108
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL--MPELGFTADDGDRLVASFSSGWQM 266
N + AKV++L M +L A DR A S G +
Sbjct: 109 ----------------------NAAAIKAKVTQLLEMVQLAHLA---DRYPAQLSGGQKQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R++L + L +P +LLLDEP LD
Sbjct: 144 RVALARALAVEPQILLLDEPFGALD 168
|
Length = 353 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 3e-13
Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 52/216 (24%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG-- 478
++ +K+L Y ++ N ++ IE+ TA+IGP+GCGKST L+ I M P
Sbjct: 20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS 79
Query: 479 -GEVLLGEHNVL-------------------PNYFEQ----NQAEALD---------LDK 505
GE+L N+L PN F + N AL LD+
Sbjct: 80 EGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDE 139
Query: 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
V E++ +AA W D++K D L LSGG++ RL + + +L
Sbjct: 140 IVEESLTKAAL-W--DEVK----------DRLHSSALSLSGGQQQRLCIARTLAMKPAVL 186
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+LDEP + LD S +EE I+E K ++I V+H+
Sbjct: 187 LLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
|
Length = 268 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 56/216 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPR 477
+++K+L+ Y D + NL IE + TA+IGP+GCGKST L+ LI ++
Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIE- 62
Query: 478 GGEVLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLET 510
GEVLL ++ PN F N A DK L+
Sbjct: 63 -GEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDE 121
Query: 511 VAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLL 565
+ E A W D++K D L + LSGG++ RL + + V+P LL
Sbjct: 122 IVEKSLKGAALW--DEVK----------DRLKKSALGLSGGQQQRLCIARALAVEPEVLL 169
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+DEPT+ LD S +EE I E K T++ V+H+
Sbjct: 170 -MDEPTSALDPISTLKIEELIQELKKDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-13
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 29/223 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ K + + + + ++ E G I+GP+G GKSTL+KLI L P G +L+
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 485 EHNVL-----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLL 527
++ P+ FE + ++ + + + D++ L
Sbjct: 64 GVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML--------KGEKNVDVEYYL 115
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
+ R V LSGGE R++ + + +L+LDEPT+ LD S E++EE I
Sbjct: 116 SIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 588 EYKG----TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
+ K TVI ++H+ K+I + + L +YA Y+
Sbjct: 176 KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYD 218
|
Length = 241 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 4e-13
Identities = 56/231 (24%), Positives = 111/231 (48%), Gaps = 37/231 (16%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
VL +V+ +++GE VGL+G +G GK+T R++ G E+P G V +F Q+
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV---------SFRGQD- 74
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+ + R++ AF+ ++++ V + SAV+ + +++ E
Sbjct: 75 ---LYQLDRKQ-RRAFRRDVQL------VFQDSPSAVNPRMTVRQIIGE--------PLR 116
Query: 231 NLDTLD-----AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDE 285
+L +LD A++++L+ +G ++D D+L S G R+++ + L P L++LDE
Sbjct: 117 HLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE 176
Query: 286 PTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332
++LD+ +E L + I+HD + C ++ + G
Sbjct: 177 AVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 4e-13
Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 50/236 (21%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPR---G 478
++ + +L Y + N +L E TA+IGP+G GKSTLL+ I M P
Sbjct: 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64
Query: 479 GEVLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLETV 511
G ++ HN+ PN F +N L L DK VL+
Sbjct: 65 GSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA 124
Query: 512 AE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567
E A W D++K D L LSGG++ R+ + + +++L
Sbjct: 125 VEKSLKGASIW--DEVK----------DRLHDSALGLSGGQQQRVCIARVLATSPKIILL 172
Query: 568 DEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
DEPT+ LD S +EE + K T++ V+ +I +R +L +Y
Sbjct: 173 DEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228
|
Length = 252 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-13
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 53/228 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++ + + + N ++ GEK A+IGP+G GKST+L+++M LE G++ +
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV- 59
Query: 485 EHNVLPNYFEQN----QAEALDL------------------DKTVLETVAEA-------- 514
E L + +N A+ L KTVL+ V EA
Sbjct: 60 EGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMA 119
Query: 515 ---AEDWRID--DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
AE ++ D+ GL AD D + LSGG++ R+A + + +++ DE
Sbjct: 120 RAEAEKRAMELLDMVGL-------ADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE 172
Query: 570 PTNHLDIPSKEMLEEAI-------SEYKGTVITVSHDRYFVKQIVNRV 610
T+ LD E++ E + SE+ T++ V+H+ F ++ +RV
Sbjct: 173 VTSALD---PELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRV 217
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 7e-13
Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 51/270 (18%)
Query: 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLF 440
A A K+L L P + M + PE ++++N+ +
Sbjct: 285 SGARQAYKRLNELLANY----PSRDPAMPLPEPE------GHLSVENVTIVPPGGKKPTL 334
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-------------GEH- 486
+ +++ GE AIIGP+G GKSTL +LI+G+ P G V L G+H
Sbjct: 335 RGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394
Query: 487 NVLPNYFE-------QNQA---EALDLDKTVLETVAEAAEDWRIDDIKGLLGRC--NFKA 534
LP E +N A E D +K + EAA ++ + L+ R +
Sbjct: 395 GYLPQDVELFPGTVAENIARFGENADPEK-----IIEAA---KLAGVHELILRLPDGYDT 446
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---G 591
+ +L SGG++ R+A + + L+VLDEP ++LD ++ L AI K
Sbjct: 447 VIGPGGATL-SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGI 505
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
TV+ ++H R + V++++ ++ + +
Sbjct: 506 TVVVITH-RPSLLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 7e-13
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLLGEHNVLPNY 492
+ N +L +E G+ AI+G +G GK+TLL I G + G G++L P+
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 493 FEQNQAEALDLDK-----TVLETV------------AEAAEDWRIDDIKGLLGRCNFKAD 535
F++ A D TV ET+ ++A R++D+ LL
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV--LLRDLALT-R 135
Query: 536 MLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLD 575
+ V +SGGE+ R++ + + P L+ LDEPT+ LD
Sbjct: 136 IGGNLVKGISGGERRRVSIAVQLLWDPKVLI-LDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 7e-13
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 37/156 (23%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------------VLP 490
+L + GE ++GP+GCGKSTLL+++ GLE+ GE+ +G V
Sbjct: 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQ 83
Query: 491 NY-------FEQNQAEALD---LDKTVLET-VAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
NY +N A L + K +E VAEAA RI ++ +LDR
Sbjct: 84 NYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA---RILEL----------EPLLDR 130
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
K LSGG++ R+A + +V+ + + DEP ++LD
Sbjct: 131 KPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 8e-13
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 37/166 (22%)
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316
V + S G + R+ L ++ L+ +LL+LDEPTN LD++T+E LE L ++++SHDR
Sbjct: 438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDR 497
Query: 317 AFLDQLCTK--IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWE-------------- 360
F+D T+ I E + R Y G Y ++A ++ + A +
Sbjct: 498 QFVDNTVTECWIFEGNGKIGR-YVGGYHDARQQQAQYLALKQPAVKKKEEAAAPKAETVK 556
Query: 361 --------KQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
K QRE+EQ L+ L E ++E LQ +
Sbjct: 557 RSSKKLSYKLQRELEQLPQLLEDL------------EAEIEALQAQ 590
|
Length = 635 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 8e-13
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
L + + R +LTI GE ++GP+GCGK+TLL LI G P G + L +
Sbjct: 11 LSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70
Query: 490 PNYFEQN---QAEALDLDKTVLETVA--------EAAEDWRIDDIKGLLGRCNFKADMLD 538
E+ Q EAL V++ VA E A+ R + +L
Sbjct: 71 GPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ--RREIAHQMLALVGL-EGAEH 127
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+ + LSGG + R+ + + LL+LDEP LD ++E ++E
Sbjct: 128 KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQE 173
|
Length = 259 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 9e-13
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 26/194 (13%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ +NL ++R+LF+ + T+ GE I GPNG GK++LL+++ GL +P GEVL
Sbjct: 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60
Query: 484 -GE--HNVLPNYFEQ----NQAEALDLDKTVLETVA-------EAAED--WRIDDIKGLL 527
GE Y + + + T LE + ++ W GL
Sbjct: 61 QGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA 120
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
G D V LS G++ R+A + + + L +LDEP +D LE ++
Sbjct: 121 GF-------EDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA 173
Query: 588 EY---KGTVITVSH 598
++ G VI +H
Sbjct: 174 QHAEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 44/179 (24%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
S + +NL Y+ R + N +L + GE ++GPNG GK+T +I+GL +P G++
Sbjct: 2 MSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI 61
Query: 482 LLGEHNV--LPNY----------------F-----EQNQAEALDL---DKTVLETVAEAA 515
LL + ++ LP + F E N L++ D E E
Sbjct: 62 LLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELD 121
Query: 516 ---EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEP 570
E++ I ++ D K LSGGE+ R+ P +L LDEP
Sbjct: 122 ALLEEFHITHLR-------------DSKAYSLSGGERRRVEIARALAANPKFIL-LDEP 166
|
Length = 243 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-12
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 53/227 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+ +++K + L+ E+ +GE +G+VG NG GKTT +++AG +PD G V
Sbjct: 341 VEYPDLTKKLGDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV--- 396
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+KI++ Q + TV E+ L + L S+ +++ L
Sbjct: 397 DPELKISYKPQYIKPDYDGTV-EDL-------------LRSITDDLGSSYYKSEIIKPL- 441
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
L+ +L+ D+ V S G R+++ L +D
Sbjct: 442 -------------QLE-------RLL----------DKNVKDLSGGELQRVAIAACLSRD 471
Query: 278 PDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
DL LLDEP+ HLD L + + +++ +++ HD +D
Sbjct: 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMID 518
|
Length = 590 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 61/210 (29%), Positives = 90/210 (42%), Gaps = 48/210 (22%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
NL I GE AIIGP+G GKSTLL+ I L +P G +LL ++ +
Sbjct: 21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDI-------TKLRGKK 73
Query: 503 LDK------------------TVLETVAEAAEDWRIDDIKGLLGRCNFK----------- 533
L K TVLE V + LLGR F
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG-YKPTWRSLLGR--FSEEDKERALSAL 130
Query: 534 -----ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLE--EA 585
AD ++ LSGG++ R+A + + + L++ DEP LD SK++++ +
Sbjct: 131 ERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Query: 586 ISEYKG-TVITVSHDRYFVKQIVNRVVEVK 614
I++ G TVI H K+ +R+V +K
Sbjct: 191 INKEDGITVIINLHQVDLAKKYADRIVGLK 220
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 42/199 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V L+NI+K + TV+ ++ +K+G V L+G +G GKTT LR++AG E+P G +
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI--- 63
Query: 158 KSNMKIAFLSQEFEVSMS----RTVREEFMS-AFKEEMEIAGKLERVQKALESAVDDMDL 212
F+ E +V+ R + F S A M + E V L+ +
Sbjct: 64 -------FIDGE-DVTHRSIQQRDICMVFQSYALFPHMSLG---ENVGYGLK-------M 105
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+G +E QR +A+ L L GF DR V S G Q R++L +
Sbjct: 106 LGVPKEE--RKQRVKEALELVDLA----------GF----EDRYVDQISGGQQQRVALAR 149
Query: 273 ILLQDPDLLLLDEPTNHLD 291
L+ P +LL DEP ++LD
Sbjct: 150 ALILKPKVLLFDEPLSNLD 168
|
Length = 351 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-12
Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 50/211 (23%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV----- 154
+ I K++ GV L D++++ + G+ L+G NGAGK+T L+I++G +PD+G++
Sbjct: 7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ 66
Query: 155 ------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
A +A + QE + TV E
Sbjct: 67 EMRFASTTAALAAGVAIIYQELHLVPEMTVAENLY------------------------- 101
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQMR 267
+G+L + ++ R+ L+ + + + LG D D + S G QM
Sbjct: 102 ----LGQLPHKGGIVNRR-------LLNYEAREQLEHLGVDIDP-DTPLKYLSIGQRQM- 148
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298
+ + K L ++ ++ DEPT+ L IE L
Sbjct: 149 VEIAKALARNARVIAFDEPTSSLSAREIEQL 179
|
Length = 501 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 36/206 (17%)
Query: 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ ++++ F Y D + ++ GE AI+G NG GKSTL KL+ GL P G
Sbjct: 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDK----------------TVLETVAEAAE------D 517
+ +G ++ D+ + TV + VA E +
Sbjct: 63 TITVGG-------MVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPRE 115
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
++ + L + + D L+R+ LSGG+K R+A + +++LDE T+ LD
Sbjct: 116 EMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 578 SKEMLEEAISEYKG----TVITVSHD 599
+ + E + + K TV++++HD
Sbjct: 175 GRREVLETVRQLKEQKGITVLSITHD 200
|
Length = 279 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 21/218 (9%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
+SKSY G +DV++++ GE +G+VG +G+GK+T L +AG+ PD G +
Sbjct: 8 GLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSG 67
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
L Q E R +R E+ F + G RV M + R
Sbjct: 68 AELELYQLSEAERRRLMRTEW--GFVHQNPRDGLRMRVSAGANIGERLMAIGAR------ 119
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
+ + A + E+ D L +FS G Q R+ + + L+ P L+
Sbjct: 120 ---------HYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLV 170
Query: 282 LLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+DEPT LD+ ++ L G + + ++I++HD
Sbjct: 171 FMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-12
Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +++ F Y + ++ + +L I+ GE I+G +G GKSTL KLI P G VL
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 483 LGEHN---VLPNYFEQNQA----EALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNF 532
+ H+ P + + E + ++++ + +A R+ + L G +F
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 533 KADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE- 584
+++ + + + LSGG++ R+A + ++ +L+ DE T+ LD S+ +
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 585 --AISEYKGTVITVSH 598
I + TVI ++H
Sbjct: 181 MHDICAGR-TVIIIAH 195
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 61/212 (28%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E+++ G + +++ + GE + L G NG+GKTT LR+IAG P +G + +
Sbjct: 6 EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD 65
Query: 161 MKIAFLSQEFEVS--------MSR--TVRE--EFMSAFKEEMEIAGKLERVQKALESAVD 208
E M TV E EF +AF G+ + ALE
Sbjct: 66 ---IDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL-----GGEELDIAAALE---- 113
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
AV L L S+G + R+
Sbjct: 114 --------------------AVGLAPL-----------------AHLPFGYLSAGQKRRV 136
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300
+L ++L+ + + +LDEPT LD +
Sbjct: 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 20/163 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +NL Y R + N +L++++GE ++GPNG GK+T +I+GL KP G++LL
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 485 EHNV--LP---------NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLL 527
++ LP Y Q + L TV E + E R + ++ LL
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKL--TVEENILAVLEIRGLSKKEREEKLEELL 118
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ + K S LSGGE+ R+ + + L+LDEP
Sbjct: 119 EEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 48/214 (22%), Positives = 77/214 (35%), Gaps = 56/214 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+S T+ D+++ + GE + + G NGAGKTT LRI+AG PD+G V
Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62
Query: 158 KSNMK---------IAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESA 206
++ + +L + + T E F F + A
Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGN--------AATIWEA 114
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ + L G D V S+G Q
Sbjct: 115 LAQVGLAGLE-------------------------------------DLPVGQLSAGQQR 137
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300
R++L ++ L L +LDEP LD + + L
Sbjct: 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTA 171
|
Length = 209 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQN----- 496
N + GE +GPNG GK+T ++++ L +P G + ++V+ P ++
Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVP 72
Query: 497 QAEALDLDKTVLETVAEAAE-----DWRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKA 550
Q ++D D T E + ++ + LL + DR V SGG +
Sbjct: 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRR 131
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIV 607
RL ++ +L LDEPT LD ++ + + I K T++ +H ++
Sbjct: 132 RLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLC 191
Query: 608 NRV 610
+R+
Sbjct: 192 DRI 194
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 61/251 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN+S S G +L V+ +++ GE + ++G NGAGK+T L+ ++G+ PDSG V
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES- 205
+ + + A L Q ++ TV+E ++ R+
Sbjct: 62 GVPLNSWPPEELARHR-AVLPQNSSLAFPFTVQEVV------------QMGRIPHRSGRE 108
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+D + + L DL G R + S G Q
Sbjct: 109 PEEDERIAAQALAATDL-----------------------SGLAG----RDYRTLSGGEQ 141
Query: 266 MRMSLGKILLQ------DPDLLLLDEPTNHLDL---DTIEWLEGYLGKQDVPMVIISHDR 316
R+ L ++L Q L LDEPT+ LD+ L L ++ ++ + HD
Sbjct: 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL 201
Query: 317 AFLDQLCTKIV 327
Q +IV
Sbjct: 202 NLAAQYADRIV 212
|
Length = 259 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 2e-12
Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 38/184 (20%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG---------EVLLGEH---NVLPNYF 493
+ G+ T I+GPNG GK+T +K++ G P G EVL + L NYF
Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVL--KRFRGTELQNYF 152
Query: 494 EQNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
++ + V E + + E ++D++ LG N +LDR
Sbjct: 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLEN----ILDR 208
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA--ISEY--KGTVIT 595
+S LSGGE R+A +++ + DEPT++LDI ++ L A I E V+
Sbjct: 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI--RQRLNVARLIRELAEGKYVLV 266
Query: 596 VSHD 599
V HD
Sbjct: 267 VEHD 270
|
Length = 590 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-12
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 38/203 (18%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA------ 500
I GE AI+G +G GKSTLL L+ GL+ P G+V+ + +AE
Sbjct: 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF-NGQPMSKLSSAAKAELRNQKLG 90
Query: 501 -------LDLDKTVLETVA----------EAAEDWRIDDIK--GLLGRCNFKADMLDRKV 541
L D T LE VA ++ + GL R N +
Sbjct: 91 FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP------- 143
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTV-ITVS 597
S LSGGE+ R+A + +V L++ DEPT +LD + + + + + E +GT + V+
Sbjct: 144 SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203
Query: 598 HDRYFVKQIVNRVVEVKGSNLQD 620
HD K++ +R +E++ L
Sbjct: 204 HDLQLAKRM-SRQLEMRDGRLTA 225
|
Length = 233 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 35/244 (14%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E++ K Y VLK V+ + G+ + ++G +G+GK+T LR I E+P +G++
Sbjct: 10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR----- 64
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---MGRLL 217
++ E E+ + R + A K +L+R++ L +L M L
Sbjct: 65 -----VNGE-EIRLKRDKDGQLKPADKR------QLQRLRTRLGMVFQHFNLWSHMTVLE 112
Query: 218 DEFD-----LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+ + L KA+A+ + K + ++G A+ D A S G Q R+++ +
Sbjct: 113 NVIEAPVHVLGVSKAEAI------ERAEKYLAKVGI-AEKADAYPAHLSGGQQQRVAIAR 165
Query: 273 ILLQDPDLLLLDEPTNHLDLDTI-EWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L +P+++L DEPT+ LD + + E L+ L ++ MV+++H+ F + + ++
Sbjct: 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL 225
Query: 330 EMGV 333
G
Sbjct: 226 HQGK 229
|
Length = 256 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (166), Expect = 2e-12
Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 28/244 (11%)
Query: 396 QEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRL--LFNRANLTIERGEKT 453
Q++ ++++ +K+ ++ + + +V I+N F Y +R + + NL I+R + T
Sbjct: 52 QKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVT 111
Query: 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL---------- 503
A IGP+GCGKST L+ + L G GE L + +L+L
Sbjct: 112 AFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171
Query: 504 ----DKTVLETVAEAAEDWRIDDIKGL--LGRCNFKA--------DMLDRKVSLLSGGEK 549
+ ++ + VA + I+D K L + + K+ D LD+ + LSGG++
Sbjct: 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQ 231
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIV 607
RL + + +L++DEPT+ LD + +EE I E K ++I V+H ++I
Sbjct: 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRIS 291
Query: 608 NRVV 611
+ V
Sbjct: 292 DETV 295
|
Length = 329 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 3e-12
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 22/200 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++++ L+F E + LF+ ++T T I G NGCGKS+LL++I G+ +P G +
Sbjct: 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59
Query: 484 GEHNVLPN--------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN-FK- 533
N N Y N L L+ TV E + +E + + + L + FK
Sbjct: 60 --KNCNINNIAKPYCTYIGHNL--GLKLEMTVFENLKFWSEIY--NSAETLYAAIHYFKL 113
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---SEYK 590
D+LD K LS G + +A + + S L +LDE +L ++++L I +
Sbjct: 114 HDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSG 173
Query: 591 GTVITVSHDRYFVK--QIVN 608
G V+ SH +K QI+
Sbjct: 174 GIVLLSSHLESSIKSAQILQ 193
|
Length = 195 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 45/229 (19%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488
E R L N +L I G+ +IG NG GKSTLL I G KP G++L+ +V
Sbjct: 15 TPLEKRAL-NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73
Query: 489 --------LPNYFEQNQAEALDLDKTVLETVAEAA----------------EDWRIDDIK 524
L F Q+ + T+ E +A A + +
Sbjct: 74 SVAKRANLLARVF-QDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLA 132
Query: 525 GL-LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML- 582
L LG N L ++ LLSGG++ L+ + P +L+LDE T LD + E +
Sbjct: 133 RLGLGLEN----RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
Query: 583 ---EEAISEYKGTVITVSHDRYFVKQIV---NRVVEVKGSN-LQDYAGD 624
+ + E+K T + V+H+ ++ + NR++ + + D G+
Sbjct: 189 ELTAKIVEEHKLTTLMVTHN---MEDALDYGNRLIMLHSGKIVLDVTGE 234
|
Length = 263 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 65/221 (29%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG----LEKPRG- 478
++T +L R + +L IE G TA++G NG GKSTLLK + G PRG
Sbjct: 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60
Query: 479 ---GEVLL-GEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR----- 529
G+V L GE P A L + VL A+ A + +I LLGR
Sbjct: 61 RVTGDVTLNGE----P--LAAIDAPRLARLRAVLPQAAQPAFAFSAREIV-LLGRYPHAR 113
Query: 530 -----------------CNFKADMLD-RKVSLLSGGEKARLAFCKFMVK---------PS 562
A L R V+ LSGGE AR+ F + + + P
Sbjct: 114 RAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPP 173
Query: 563 TLLVLDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHD 599
L+LDEPT LD+ + L + + ++ V+ + HD
Sbjct: 174 RYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD 214
|
Length = 272 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +++K Y L +V++E +KG VG +G NGAGK+T ++II G PDSG+V
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV- 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
L EV + E + +M V++ L+ + G+LL
Sbjct: 62 ---CGEDVLQNPKEVQRNIGYLPEHNPLY-LDM-------YVREYLQFIAGIYGMKGQLL 110
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
QR + + L L + K + +L S G++ R+ L + L+ D
Sbjct: 111 K-----QRVEEMIELVGLRPEQHKKIGQL--------------SKGYRQRVGLAQALIHD 151
Query: 278 PDLLLLDEPTNHLD 291
P +L+LDEPT LD
Sbjct: 152 PKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-12
Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 33/214 (15%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ KN+ + + + +L I++GE IIGP+G GKSTLL+ I LE+ G++++
Sbjct: 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 484 GEHNVL-PNYFEQN-QAEA--------LDLDKTVLETVA-----------EAAEDWRIDD 522
V P E+ + EA L T LE V E AE +
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARE- 119
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPS--K 579
LL + S LSGG++ R+A + + VKP L++ DEPT+ LD P
Sbjct: 120 ---LLAKVGLAERA-HHYPSELSGGQQQRVAIARALAVKPK-LMLFDEPTSALD-PELRH 173
Query: 580 EMLE--EAISEYKGTVITVSHDRYFVKQIVNRVV 611
E+L+ + ++E T++ V+H+ F +++ +R++
Sbjct: 174 EVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLI 207
|
Length = 240 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 4e-12
Identities = 66/219 (30%), Positives = 86/219 (39%), Gaps = 46/219 (21%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-----KSNMKIAFLSQ--EFE 171
KGE +GL+G NGAGKTT LR I G P G V A K I ++ Q EF
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFA 61
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+V MS + G L R A +AV D L+R V
Sbjct: 62 WDFPISVAHTVMSGRTGHI---GWLRRPCVADFAAVRDA------------LRR----VG 102
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L L DR V S G + R+ + + L P +LLLDEP LD
Sbjct: 103 LTEL-----------------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145
Query: 292 LDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
+ T E L L +++ +HD A C ++V
Sbjct: 146 MPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVV 184
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 4e-12
Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 52/211 (24%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG---GEVL 482
+++ F Y D ++ IE A IGP+GCGKST L+L M P GE+
Sbjct: 7 RDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR 66
Query: 483 LGEHNVL-------------------PNYFE----QNQAEALDLD---------KTVLET 510
+ N+ PN F +N A L ++ + V ET
Sbjct: 67 IDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEET 126
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ AA W D++K D L LSGG++ RL + M ++L++DEP
Sbjct: 127 LKGAAL-W--DEVK----------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEP 173
Query: 571 TNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+ LD S +EE I E K T++ V+H+
Sbjct: 174 ASALDPISTAKVEELIHELKKDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 4e-12
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 30/199 (15%)
Query: 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ KN+ Y + + +I+ GEK I+G G GKS+LL + L + G +L
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 483 LGEHNVL-----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ ++ P F LD E W+ + G
Sbjct: 63 IDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDP-----FGEYSDEELWQALERVG 117
Query: 526 LLGRCNFKADMLDRKVSL----LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
L LD V LS G++ L + +++ S +LVLDE T +D + +
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 582 LEEAI-SEYKG-TVITVSH 598
+++ I +K TV+T++H
Sbjct: 178 IQKTIREAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 55/242 (22%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEK 475
SG +V+ ++L Y D + ++ I + TA+IGP+GCGKST L+ I M ++
Sbjct: 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDA 94
Query: 476 PR-GGEVLLGEHNVL-------------------PNYFEQN-----------QAEALDLD 504
R GE+ NV PN F ++ Q D+D
Sbjct: 95 ARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID 154
Query: 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
+ V E++ AA W D++K D LD LSGG++ RL + + +
Sbjct: 155 ERVEESLRRAAL-W--DEVK----------DQLDSSGLDLSGGQQQRLCIARAIAPDPEV 201
Query: 565 LVLDEPTNHLD--IPSK--EMLEEAISEYKGTVITVSHDRYFVKQIVNRV-VEVKGSNLQ 619
+++DEP + LD SK +++EE EY TV+ V+H+ +I ++ V + G L
Sbjct: 202 ILMDEPASALDPVATSKIEDLIEELAEEY--TVVIVTHNMQQAARISDKTAVFLTGGELV 259
Query: 620 DY 621
++
Sbjct: 260 EF 261
|
Length = 285 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 5e-12
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 49/220 (22%)
Query: 87 SNTGASSISSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144
+ + A++ + L N+S +Y VLK ++ ++K GEKV L+G G GK+T L+++
Sbjct: 328 TTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387
Query: 145 GQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194
+P G ++ + I+ +SQ + S T+R+
Sbjct: 388 RAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL-FSATLRDN------------- 433
Query: 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254
+ A +A D+ L+ ++LQ+ V L+ L L LG +G
Sbjct: 434 ----LLLAAPNASDE-----ALI---EVLQQ----VGLEKLLEDDKGLNAWLG----EGG 473
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
R + S G Q R+ + + LL D LLLLDEPT LD +T
Sbjct: 474 RQL---SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510
|
Length = 574 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 5e-12
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 27/201 (13%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE 499
+L++ GE + GP+G GKSTLL+ + P G++L+ + E
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 500 ALDLDKTV----------------LETVAEAAED--WRIDD----IKGLLGRCNFKADML 537
L++ +T L+ VAE + LL R N +
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLW 146
Query: 538 DRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GT-V 593
+ SGGE+ R+ + F+V LL LDEPT LD ++ ++ E I E K G +
Sbjct: 147 SLAPATFSGGEQQRVNIARGFIVDYPILL-LDEPTASLDATNRAVVVELIREAKARGAAL 205
Query: 594 ITVSHDRYFVKQIVNRVVEVK 614
+ + HD + + +R+++V
Sbjct: 206 VGIFHDEEVREAVADRLLDVS 226
|
Length = 235 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 5e-12
Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 33/245 (13%)
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G+S V I L D+ + + I I+GP+G GKSTLLK++ L +
Sbjct: 2 EAGKSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE 61
Query: 476 PRGGEVLLGEHNVLPNYFEQN--QAEALDLDK---------------TVLETVAEAAEDW 518
++ + + VL YF ++ Q +A+ L K ++ + +A +
Sbjct: 62 IYDSKIKV-DGKVL--YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH 118
Query: 519 RIDD---IKGLLGRCNFKA-------DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
I + IK ++ C K D L+ S LSGG++ RL + + +L++D
Sbjct: 119 GIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMD 178
Query: 569 EPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
EPT+ +DI + + +E+ I+E K ++ VSH+ V ++ + V + L ++ G N
Sbjct: 179 EPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW-GSSN 237
Query: 627 VCFTS 631
FTS
Sbjct: 238 EIFTS 242
|
Length = 257 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-12
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVII 312
V S G + R++L + LL +PDLLLLDEPT+ LD + E L L ++ ++I+
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV 136
Query: 313 SHDRAFLDQLCTKIV 327
+HD + +++
Sbjct: 137 THDPELAELAADRVI 151
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 6e-12
Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 37/244 (15%)
Query: 98 VKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD 150
+++E++SK++ + VLK+V+ V GE V L G +GAGK+T L+ + PD
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 151 SGNVIKAKSNMKIAFLSQ--EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
SG I + L+Q EV R ++S F + RV ALE +
Sbjct: 62 SGR-ILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR------VIPRVS-ALEVVAE 113
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
+ G + R + + + ++ L P A+FS G Q R+
Sbjct: 114 PLLERGVPREA--ARARARELLARLNIPERLWHLPP-------------ATFSGGEQQRV 158
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324
++ + + D +LLLDEPT LD +E + + ++ I HD + +
Sbjct: 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAE-AKARGAALIGIFHDEEVRELVAD 217
Query: 325 KIVE 328
++++
Sbjct: 218 RVMD 221
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 6e-12
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 65/217 (29%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRIIAGQEEPDS 151
++ +N+S Y+ VLK++++ +K GEKVG+VG G+GK++ R++ E S
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV----ELSS 58
Query: 152 GNVI------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLE 197
G+++ +S +I+ + Q+ V S T+R + F E + E+ LE
Sbjct: 59 GSILIDGVDISKIGLHDLRS--RISIIPQD-PVLFSGTIRSN-LDPFGEYSDEELWQALE 114
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
RV L+ V+ + LD V + G+
Sbjct: 115 RVG--LKEFVESL---------------------PGGLDTVV----------EEGGE--- 138
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G + + L + LL+ +L+LDE T +D +T
Sbjct: 139 -NLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 59/229 (25%), Positives = 90/229 (39%), Gaps = 73/229 (31%)
Query: 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY--- 492
L N NL + E ++IGPNG GK+T+ + G KP GG +LL ++ LP +
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78
Query: 493 --------------------------------------------FEQNQAEALDLDKTVL 508
F + ++EALD T L
Sbjct: 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL 138
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
E V GLL + +R+ L+ G++ RL + MV +L+LD
Sbjct: 139 ERV-------------GLL-------EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178
Query: 569 EPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEV 613
EP L+ + L+E I+ E+ TV+ + HD V I +R+ V
Sbjct: 179 EPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227
|
Length = 255 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 7e-12
Identities = 63/217 (29%), Positives = 89/217 (41%), Gaps = 58/217 (26%)
Query: 88 NTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147
N SS+S V+L ISKS+ G V+ ++ + GE + L+G +G GKTT LR+IAG E
Sbjct: 5 NKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64
Query: 148 EPDSG----------NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197
PDSG +V ++ F S M TV E AF M+ E
Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHM--TVFENV--AFGLRMQKTPAAE 120
Query: 198 ---RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254
RV +AL M +L +EF
Sbjct: 121 ITPRVMEALR--------MVQL-EEF--------------------------------AQ 139
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
R S G Q R+++ + ++ P +LLLDE + LD
Sbjct: 140 RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 7e-12
Identities = 65/245 (26%), Positives = 103/245 (42%), Gaps = 68/245 (27%)
Query: 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++ G E I K + DV+ +V++GE ++G++G+GK+T LR I EP SG
Sbjct: 21 LAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
Query: 154 VI---KAKSNM-----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLE 197
V+ + + M KI+ + Q F + RTV E AF +E+ G + E
Sbjct: 81 VLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLEN--VAFG--LEVQGVPRAE 136
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
R ++A E+ ++L+G L +
Sbjct: 137 REERAAEA----LELVG-------------------------------LE---GWEHKYP 158
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMV 310
S G Q R+ L + L DPD+LL+DE + LD D + L+ L K +V
Sbjct: 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT---IV 215
Query: 311 IISHD 315
I+HD
Sbjct: 216 FITHD 220
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 8e-12
Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 32/201 (15%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ Y + N NL I +GE +IGP+G GK+T +K+I L +P GE+ +
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 484 GEHNVLPNYFEQN------------QAEALDLDKTVLETVA---------EAAEDWRIDD 522
++ EQ+ Q L TV E +A + R D+
Sbjct: 61 DGEDIR----EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADE 116
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+ L+G A+ DR LSGG++ R+ + + LL++DEP LD +++ L
Sbjct: 117 LLALVGLD--PAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 583 EEAI----SEYKGTVITVSHD 599
+E E T++ V+HD
Sbjct: 175 QEEFKRLQQELGKTIVFVTHD 195
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 9e-12
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 53/215 (24%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG---G 479
+ +K+L Y NL IE TA IGP+GCGKST+L+ + M P G
Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG 64
Query: 480 EVLLGEHNVL-------------------PNYF-----EQNQAEALDLD----KTVLETV 511
EVLL ++ PN F N L L+ K L+ +
Sbjct: 65 EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL 124
Query: 512 AE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E A W +++K D LD+ LSGG++ RL + + V+P LL
Sbjct: 125 VEKSLRGANLW--NEVK----------DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLL- 171
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+DEP + LD S +E+ I+E K T++ V+H+
Sbjct: 172 MDEPCSALDPISTLAIEDLINELKQDYTIVIVTHN 206
|
Length = 258 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 1e-11
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDR 316
S G + R++L + LL DP+LL+LDEPT+ LD ++ L K+ +++ SH
Sbjct: 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155
Query: 317 AFLDQLCTKIV 327
++LC ++
Sbjct: 156 EEAERLCDRVA 166
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-11
Identities = 56/230 (24%), Positives = 107/230 (46%), Gaps = 49/230 (21%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ EN+S SY VLKD+++ ++ GEKV +VG +G+GK+T ++++ +P SG +
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388
Query: 155 -IKAKSNM-------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
++ +I +SQ+ + S T+RE
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLL-FSGTIRENI------------------------ 423
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+GR + ++ + N ++ L G+ G+R V + S G +
Sbjct: 424 -----ALGRPDATDEEIEEALKLANAHEF---IANL--PDGYDTIVGERGV-NLSGGQRQ 472
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314
R+++ + LL++P +L+LDE T+ LD +T ++ L K + +II+H
Sbjct: 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
|
Length = 567 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 67/230 (29%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIK 156
+++++ S G +LK V +KKGE L+G NG+GK+T + I G E G
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEG---- 57
Query: 157 AKSNMKIAFLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+I F ++ ++ R AF+ EI G V + D + R
Sbjct: 58 -----EILFKGEDITDLPPEERARLGIFLAFQYPPEIPG------------VKNADFL-R 99
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
++E FS G + R + ++LL
Sbjct: 100 YVNE---------------------------------------GFSGGEKKRNEILQLLL 120
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFLDQL 322
+PDL +LDEP + LD+D + + L ++ ++II+H + LD +
Sbjct: 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYI 170
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-11
Identities = 52/232 (22%), Positives = 111/232 (47%), Gaps = 51/232 (21%)
Query: 98 VKLENISKSYK---GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
VK +N++ +Y VL+DV++ + GE LVG +G+GK+T + ++ +P G V
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 155 I---KAKS-------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ K S + K++ + QE V +R++++ IA L+
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQE-PVLFARSLQD----------NIAYGLQSC----- 115
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
F+ ++ AQ + + +S+L G+ + G++ + S G
Sbjct: 116 --------------SFECVKEAAQKAHAHSF---ISEL--ASGYDTEVGEK-GSQLSGGQ 155
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG--YLGKQDVPMVIISH 314
+ R+++ + L+++P +L+LDE T+ LD ++ + ++ Y + +++I+H
Sbjct: 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 50/201 (24%), Positives = 75/201 (37%), Gaps = 39/201 (19%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++ +S Y L DV++ V+ G V L+G NGAGK+T ++ G +
Sbjct: 1 ALEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-- 58
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL--MG 214
+A + R R L R+ + D+DL
Sbjct: 59 -----SVA------GHDLRRAPRA--------------ALARLGVVFQQPTLDLDLSVRQ 93
Query: 215 RLLDEFDL--LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
L L L R + L A+ LG D+ V + G + R+ + +
Sbjct: 94 NLRYHAALHGLSRAEARARIAELLAR-------LGLAERADDK-VRELNGGHRRRVEIAR 145
Query: 273 ILLQDPDLLLLDEPTNHLDLD 293
LL P LLLLDEPT LD
Sbjct: 146 ALLHRPALLLLDEPTVGLDPA 166
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 61/204 (29%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++ N++ Y +L+ V+ EV KGE ++G NG GKTT L+ + G SG++
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61
Query: 156 ----KAKSNMK----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
K + + IA++ Q E+ TV E ++ +
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLA-----------ALPRRSRKI 110
Query: 208 DDMDLMGRLLDEF----DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
D + + F ++L R+ GD S G
Sbjct: 111 PD-----EIYELFPVLKEMLGRRG-------------------------GD-----LSGG 135
Query: 264 WQMRMSLGKILLQDPDLLLLDEPT 287
Q ++++ + L+ P LLLLDEPT
Sbjct: 136 QQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 42/206 (20%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + +L + D + + +L++ G ++GPNG GK+TLL+ I G P G VL+
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 485 EHNV--------------LPNYFEQNQAEALDLDKTVLETV-------------AEAAED 517
+V +P Q +L + V + V +
Sbjct: 64 GDDVEALSARAASRRVASVP------QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDR 117
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
++ G F DR V+ LSGGE+ R+ + + + + +L+LDEPT LDI
Sbjct: 118 AAVERAMERTGVAQF----ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173
Query: 578 SK----EMLEEAISEYKGTVITVSHD 599
+ E++ + + K T + HD
Sbjct: 174 HQVRTLELVRRLVDDGK-TAVAAIHD 198
|
Length = 402 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 66/213 (30%), Positives = 93/213 (43%), Gaps = 56/213 (26%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPRGGE 480
+ L F Y D + +L E+ + TA+IGP+GCGKST L+ LI G GE
Sbjct: 10 RGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVE--GE 67
Query: 481 VLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLETVAE 513
+LL N+ PN F +N A L + DK L E
Sbjct: 68 ILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVE 127
Query: 514 ----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLD 568
A W D++K D L LSGG++ RL + + V+P LL +D
Sbjct: 128 RSLRHAALW--DEVK----------DRLHESALGLSGGQQQRLCIARALAVEPEVLL-MD 174
Query: 569 EPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
EP + LD + + +EE I E K T+I V+H+
Sbjct: 175 EPASALDPIATQKIEELIHELKARYTIIIVTHN 207
|
Length = 253 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 26/213 (12%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +++L F Y+D +A +L+I G KTA++GPNG GKSTLL + G+ P+ G
Sbjct: 4 IIEVEDLHFRYKDG---TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG 60
Query: 480 EV-LLGEHNVLPNYFEQNQAEAL---DLD-----KTVLETVAEAAEDWRIDDIKGLLGRC 530
V ++G N L D D TV + VA + +D + R
Sbjct: 61 RVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK-DEVERRV 119
Query: 531 N--FKA----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
KA D D+ LS G+K R+A + ++VLDEP +LD +E L E
Sbjct: 120 EEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME 179
Query: 585 AISEYKG---TVITVSHDRYFVKQIVNRVVEVK 614
+ TVI +HD + ++V+ +K
Sbjct: 180 ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLK 212
|
Length = 274 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 39/207 (18%)
Query: 425 VTIKNLEFGY------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
+ ++N+ + Y E R LF+ NLTIE G TA IG G GKST+++L+ GL P
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFD-VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 479 GEVLLGEHNV-----------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521
G V + + + L F ++Q ++TVL+ VA +++ +
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL----FEETVLKDVAFGPQNFGVS 117
Query: 522 DIKGL------LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
+ L + ++ LSGG+ R+A + +LVLDEPT LD
Sbjct: 118 QEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 576 IPS--KEMLE--EAISEYKGTVITVSH 598
P KE++ + + + T++ V+H
Sbjct: 178 -PKGRKELMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 54/239 (22%)
Query: 98 VKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+K EN+ K Y+ VLK V+ + KGE V +VG +G+GK+T L ++ G + P SG
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLERVQKALESA 206
V+ F Q +S R + F+ F + LE V
Sbjct: 62 VL---------FNGQSLS-KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV------- 104
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDT---LDAKVSKLMPELGFTADDGDRLVASFSSG 263
M L+ + + + K +A + L+ +++ EL S G
Sbjct: 105 -----AMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSEL--------------SGG 145
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318
+ R+++ + L+ P L+L DEPT +LD + + + + + + ++++HD
Sbjct: 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 37/199 (18%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---- 496
N +L I G+ A++GP+G GK+TLL++I GLE G + +V +
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78
Query: 497 --QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV------------- 541
Q AL TV + +A + L R A + KV
Sbjct: 79 VFQHYALFRHMTVFDNIAFG--------LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 542 ----SLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIP-SKEM---LEEAISEYKGT 592
+ LSGG+K R+A + + V+P LL LDEP LD KE+ L + E K T
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILL-LDEPFGALDAQVRKELRRWLRQLHEELKFT 189
Query: 593 VITVSHDRYFVKQIVNRVV 611
+ V+HD+ ++ +RVV
Sbjct: 190 SVFVTHDQEEAMEVADRVV 208
|
Length = 353 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-11
Identities = 62/249 (24%), Positives = 109/249 (43%), Gaps = 65/249 (26%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + K + L +V+ V G+ G++G +GAGK+T +R + E P SG+
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 154 VI---------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198
VI KA+ + + F Q F + SRTV +A LE
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIF--QHFNLLSSRTVFG----------NVALPLE- 108
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
L + D + KV++L+ +G D D +
Sbjct: 109 ------------------------LDNTPK----DEIKRKVTELLALVGLG-DKHDSYPS 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
+ S G + R+++ + L +P +LL DE T+ LD T +E L+ + + +++I+H
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITH 199
Query: 315 DRAFLDQLC 323
+ + ++C
Sbjct: 200 EMDVVKRIC 208
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 28/203 (13%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEV 481
+++IK+L ED+ + NL + GE AI+GPNG GKSTL + G E + GG V
Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 482 LLGEHNVLPNYFEQNQAEALDL------------DKTVLETVAEAAEDWR---------- 519
++L E E + + ++ L+T A +R
Sbjct: 61 EFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 520 IDDIKGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
D ++ + D+L R V++ SGGEK R + V L +LDE + LDI +
Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180
Query: 579 KEMLEEAISEY---KGTVITVSH 598
+++ + ++ K + I V+H
Sbjct: 181 LKIVADGVNSLRDGKRSFIIVTH 203
|
Length = 248 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-11
Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 52/213 (24%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
E+ GE +G++G NG GKTT ++++AG +PD G+ K + K ++S +++ TV
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDG----TV 418
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
+ SA + A S+ +++ L NL+
Sbjct: 419 EDLLRSAIRS-------------AFGSSYFKTEIVKPL--------------NLE----- 446
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD----T 294
L+ +R V S G R+++ L ++ DL LLDEP+ +LD++
Sbjct: 447 --DLL----------ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494
Query: 295 IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
+ + ++ + +++ HD +D + +++
Sbjct: 495 AKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527
|
Length = 591 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + +L Y + + + ++G +GPNG GKST +K+I G P G V +
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62
Query: 485 EHNVLPNYFEQNQA-------EALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
+VL N E + L LD V E + A + + ++ ++
Sbjct: 63 GEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVG 122
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM----LEEAIS 587
+ + +K+ LS G + R+ + ++ +L+LDEPT LD P++ + + + I
Sbjct: 123 LRPEQ-HKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD-PNQLVEIRNVIKNIG 180
Query: 588 EYKGTVITVSHDRYFVKQIVNRVVEVK 614
+ K T+I +H V+ I +RV+ +
Sbjct: 181 KDK-TIILSTHIMQEVEAICDRVIIIN 206
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 3e-11
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 27/205 (13%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL------ 482
+L F Y+D + NL T ++G NGCGKSTL + GL +P+ G VL
Sbjct: 6 DLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 483 -------LGEHNVLPNYFE--QNQAEALDLDKTVLET-----VAEAAEDWRIDDIKGLLG 528
L + F+ + Q D+D + + V EA R+D+ L+
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD 125
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+F+ + + LS G+K R+A +V + L+LDEPT LD + + I
Sbjct: 126 AQHFR----HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181
Query: 589 YKGT---VITVSHDRYFVKQIVNRV 610
VI SHD + +I + V
Sbjct: 182 IVAQGNHVIISSHDIDLIYEISDAV 206
|
Length = 271 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 48/220 (21%)
Query: 77 FENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGK 136
E K N + SS + + N+ G VLK++ +++KGE + + G G+GK
Sbjct: 21 LEKAKQENN--DRKHSSDDNNLFFSNLC--LVGAPVLKNINLKIEKGEMLAITGSTGSGK 76
Query: 137 TTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196
T+ L +I G+ EP G K K + +I+F SQ F M T++E
Sbjct: 77 TSLLMLILGELEPSEG---KIKHSGRISFSSQ-FSWIMPGTIKENI-------------- 118
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT--ADDGD 254
+ G DE+ R V L+ ++K PE T + G
Sbjct: 119 ---------------IFGVSYDEY----RYKSVVKACQLEEDITKF-PEKDNTVLGEGGI 158
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
L S G + R+SL + + +D DL LLD P +LD+ T
Sbjct: 159 TL----SGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 47/193 (24%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
N A+L +E GE I+G +G GKSTL++L+ L +P GE+L+ ++ + AE
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK----LSAAEL 100
Query: 501 LDL----------------DKTVLETVA--------------EAAEDWRIDDIKGLLGRC 530
+L +TVLE VA E A + ++ GL G
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEAL--ELVGLEGYA 158
Query: 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAI--- 586
D+ + LSGG + R+ + + +L++DE + LD + EM +E +
Sbjct: 159 -------DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQ 211
Query: 587 SEYKGTVITVSHD 599
++ K T++ ++HD
Sbjct: 212 AKLKKTIVFITHD 224
|
Length = 386 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 4e-11
Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 52/241 (21%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK------------ 468
+ ++T ++ Y +L + E TA+IGP+GCGKST L+
Sbjct: 2 AKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGV 61
Query: 469 LIMGLEKPRGGEVLLGEHNVL------------PNYFE----QNQAEALDL----DKTVL 508
I G RG + +V+ PN F +N L L DK VL
Sbjct: 62 TITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVL 121
Query: 509 ----ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPST 563
ET + A W D++K D L LSGG++ R+ + + VKP
Sbjct: 122 DEAVETSLKQAAIW--DEVK----------DHLHESALSLSGGQQQRVCIARVLAVKPDV 169
Query: 564 LLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
+L LDEPT+ LD S +E + E + T+I V+H + +I ++ NL ++
Sbjct: 170 IL-LDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228
Query: 622 A 622
A
Sbjct: 229 A 229
|
Length = 252 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 4e-11
Identities = 65/214 (30%), Positives = 97/214 (45%), Gaps = 58/214 (27%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPRGGE 480
KNL Y ++ N NL I + TA+IGP+GCGKST L+ LI ++ GE
Sbjct: 8 KNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE--GE 65
Query: 481 VLLGEHNVL-------------------PNYFEQNQAEAL-------------DLDKTVL 508
VLL N+ PN F + + + +LDK V
Sbjct: 66 VLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVE 125
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVL 567
+ +AA W D++K D L + LSGG++ RL + + VKP +L +
Sbjct: 126 WALKKAAL-W--DEVK----------DDLKKSALKLSGGQQQRLCIARTIAVKPDVIL-M 171
Query: 568 DEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
DEPT+ LD S +E+ + E K T++ V+H+
Sbjct: 172 DEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN 205
|
Length = 251 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 4e-11
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 22/173 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---QAEA 500
NLT+E GE ++GP+GCGK+TLL LI G + G + L V E+ Q E
Sbjct: 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80
Query: 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL----------LSGGEKA 550
L + V + VA + ++ ++ R ML +KV L LSGG++
Sbjct: 81 LLPWRNVQDNVAFGLQLAGVEKMQ----RLEIAHQML-KKVGLEGAEKRYIWQLSGGQRQ 135
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHD 599
R+ + + LL+LDEP LD ++E ++ + E V+ ++HD
Sbjct: 136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188
|
Length = 255 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-11
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 55/221 (24%)
Query: 420 SGRSVV-TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIM 471
+ + VV +NL Y + NL I E TAIIGP+GCGKST +K L+
Sbjct: 19 APKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVP 78
Query: 472 GLEKPRGGEVLLGEHNVL-------------------PNYFEQNQAEALDL--------D 504
++ G++L + N+ PN F ++ + + D
Sbjct: 79 SVKT--TGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKD 136
Query: 505 KTVLETVAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560
K L+ + E A W D++K D L LSGG++ RL + +
Sbjct: 137 KKTLDEIVEKSLRGAAIW--DELK----------DRLHDNAYGLSGGQQQRLCIARCLAI 184
Query: 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++++DEPT+ LD S +EE + E K ++I V+H+
Sbjct: 185 EPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHN 225
|
Length = 271 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 5e-11
Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 46/173 (26%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
+ + E +G++G NG GKTT ++++AG +PD G++ +++ Q + TV
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE--IELDTVSYKPQYIKADYEGTV 78
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
R+ S + ++ L +
Sbjct: 79 RDLLSS-------------ITKDFYTHPYFKTEIAKPL---------------------Q 104
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ +++ DR V S G R+++ L +D D+ LLDEP+ +LD
Sbjct: 105 IEQIL----------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 5e-11
Identities = 63/230 (27%), Positives = 94/230 (40%), Gaps = 65/230 (28%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L +SK Y TVL + + G+ V +VG +G GK+T LR++AG E P +G +
Sbjct: 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL----- 69
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM---GRL 216
+AG L A +D LM RL
Sbjct: 70 --------------------------------LAG-----TAPLAEAREDTRLMFQDARL 92
Query: 217 L------DEFDL-LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
L D L L+ + + L L A +G AD + A+ S G + R++
Sbjct: 93 LPWKKVIDNVGLGLKGQWRDAALQALAA--------VGL-ADRANEWPAALSGGQKQRVA 143
Query: 270 LGKILLQDPDLLLLDEPTNHLD-LDTIEW---LEGYLGKQDVPMVIISHD 315
L + L+ P LLLLDEP LD L IE +E + +++++HD
Sbjct: 144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
|
Length = 257 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-11
Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 43/211 (20%)
Query: 420 SGRSVVTI--KNLE-FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
+ VTI ++LE + + L N T+ G++ A++GP+G GK++LL ++G
Sbjct: 343 ASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY 402
Query: 477 RGGEVLLGEHNVLPNYFEQNQAEALDLDK-----------------TVLETVAEAAEDWR 519
+G ++ N E + LD + T+ + V D
Sbjct: 403 QG--------SLKINGIELRE---LDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDAS 451
Query: 520 IDDIKGLLGRCNFK------ADMLDRKVS----LLSGGEKARLAFCKFMVKPSTLLVLDE 569
+ ++ L LD + LS G+ RLA + +++P LL+LDE
Sbjct: 452 DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE 511
Query: 570 PTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
PT LD S++++ +A++ T + V+H
Sbjct: 512 PTASLDAHSEQLVMQALNAASRRQTTLMVTH 542
|
Length = 588 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 8e-11
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 27/200 (13%)
Query: 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++ L + Y D N+ I++GE TAI+G NG GKSTL + + G+ KP G +L
Sbjct: 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 483 LGEHNVLPNY-----FEQNQAEAL---DLDK-----TVLETVAEAA------EDWRIDDI 523
+ +Y + ++ + D D +V + V+ A ED +
Sbjct: 65 FDGKPI--DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV 122
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEML 582
L R + D+ LS G+K R+A +V +LVLDEPT LD + E++
Sbjct: 123 DNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 583 EEAISEYKG---TVITVSHD 599
+ + K T+I +HD
Sbjct: 182 KLLVEMQKELGLTIIIATHD 201
|
Length = 283 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 8e-11
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 24/188 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L I +G+ I+G NGCGKSTL KL GL P+ GE+LL V ++ + DL
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVS----ADSRDDYRDL 417
Query: 504 DKTVLETV--------AEAAEDWRIDDIKGLLGRCNF--KADMLDRKVSL---LSGGEKA 550
+ + E +D+ + L R K + D S LS G++
Sbjct: 418 FSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML-EEAISEYK---GTVITVSH-DRYFVKQ 605
RLA ++ +L+ DE D K EE + + K T+I +SH D+YF +
Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF--E 535
Query: 606 IVNRVVEV 613
+ ++++++
Sbjct: 536 LADQIIKL 543
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 60/261 (22%), Positives = 101/261 (38%), Gaps = 72/261 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L I+ Y L D+T + +GE + L+G +GAGK++ LR++ E P SG + A
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 158 KSNM---------KIAFLSQEFEVSM---------SRTVREEFMSAFKEEMEIAGKLERV 199
++ I L + V M TV++ + A + G +
Sbjct: 63 GNHFDFSKTPSDKAIRELRR--NVGMVFQQYNLWPHLTVQQNLIEA---PCRVLGLSK-- 115
Query: 200 QKALESAVDDMDLMGRL-LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
+AL A L+ RL L + DR
Sbjct: 116 DQALARA---EKLLERLRLKPY--------------------------------ADRFPL 140
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVI 311
S G Q R+++ + L+ +P +LL DEPT LD + I L + VI
Sbjct: 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE----TGITQVI 196
Query: 312 ISHDRAFLDQLCTKIVETEMG 332
++H+ + +++V E G
Sbjct: 197 VTHEVEVARKTASRVVYMENG 217
|
Length = 242 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 60/207 (28%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L I GE +IG +G GKSTL++ I LE+P G VL+ ++ AL
Sbjct: 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT----------ALSE 74
Query: 504 D---------------------KTVLETVA---EAAEDWRIDDIK----------GLLGR 529
+TV + VA E A +IK GL
Sbjct: 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGL--- 130
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK-----EMLE 583
+D DR + LSGG+K R+A + + P LL DE T+ LD P+ E+L+
Sbjct: 131 ----SDKADRYPAQLSGGQKQRVAIARALASNPKVLLC-DEATSALD-PATTRSILELLK 184
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRV 610
+ E T++ ++H+ VK+I +RV
Sbjct: 185 DINRELGLTIVLITHEMDVVKRICDRV 211
|
Length = 343 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 50/196 (25%)
Query: 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVI-------KA 157
K +L DV+ V+ G+ + ++G +G+GKTT L I+G+ E SG ++
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 158 KSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ +A++ Q+ + TVRE + + + + R
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILR-------------------------LPR 112
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ +R + D ++ G LV S G + R+S+ LL
Sbjct: 113 KSSDAIRKKRVEDVLLRDLALTRI-------------GGNLVKGISGGERRRVSIAVQLL 159
Query: 276 QDPDLLLLDEPTNHLD 291
DP +L+LDEPT+ LD
Sbjct: 160 WDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 47/225 (20%)
Query: 100 LENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ ++S SY K + L+DV+ + GE V ++G +G GKTT L +IAG P G++
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+I E V +++ + + +L ++KA
Sbjct: 66 --GRRIEGPGAERGVVFQNEALLPWLNV-IDNVAFGLQLRGIEKA--------------- 107
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
QR+ A +++ +G + + S G + R+ + + L +
Sbjct: 108 ------QRREIA----------HQMLALVGL-EGAEHKYIWQLSGGMRQRVGIARALAVE 150
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGYL-------GKQDVPMVIISHD 315
P LLLLDEP LD T E ++ L GKQ +++I+HD
Sbjct: 151 PQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ---VLLITHD 192
|
Length = 259 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-10
Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 46/205 (22%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ E++ YK G +L +++ +K GE VG+VG +G+GK+T ++I P++G V+
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 156 KAKSNMKI---AFLSQEFEVSM------SRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
++ + A+L ++ V + +R++R+ A + +ERV +A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALA-----DPGMSMERVIEA---- 111
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+L D + +PE G+ G++ A S G +
Sbjct: 112 -------AKLAGAHDFISE-----------------LPE-GYDTIVGEQ-GAGLSGGQRQ 145
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++ + L+ +P +L+ DE T+ LD
Sbjct: 146 RIAIARALIHNPRILIFDEATSALD 170
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 48/229 (20%)
Query: 102 NISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
N+ K Y+ VL +V++ + +GE + +VG +G+GK+T L ++ G + P SG+VI
Sbjct: 10 NLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI-- 67
Query: 158 KSNMKIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLERVQKALESAVDDM 210
F Q +S + E F+ F + LE V L
Sbjct: 68 -------FNGQPMS-KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPL------- 112
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L+G+ ++ A+ +++ +++ +G R + S G + R+++
Sbjct: 113 -LIGK--------KKPAEI------NSRALEMLAAVGLEHRANHR-PSELSGGERQRVAI 156
Query: 271 GKILLQDPDLLLLDEPTNHLDL---DTIEWLEGYLG-KQDVPMVIISHD 315
+ L+ +P L+L DEPT +LD D+I L G L Q ++++HD
Sbjct: 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205
|
Length = 233 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-10
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 44/218 (20%)
Query: 77 FENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGK 136
FE K +NK + G+ N S VLK+++++++KG+ + + G G+GK
Sbjct: 410 FEKIKQNNK--ARKQPNGDDGLFFSNFS--LYVTPVLKNISFKLEKGQLLAVAGSTGSGK 465
Query: 137 TTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196
++ L +I G+ EP G K K + +I+F Q M T+++
Sbjct: 466 SSLLMMIMGELEPSEG---KIKHSGRISFSPQ-TSWIMPGTIKDNI-------------- 507
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
+ G DE+ R + L+ ++ + +G
Sbjct: 508 ---------------IFGLSYDEY----RYTSVIKACQLEEDIALFPEKDKTVLGEGG-- 546
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G + R+SL + + +D DL LLD P HLD+ T
Sbjct: 547 -ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 25/232 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++++ I K++ GV L + EV+ GE VGL G NGAGK+T ++I+ SG
Sbjct: 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKIL-------SGVYPHG 54
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ +I + + S R + +E+ + +L + +++ L G +
Sbjct: 55 TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLG--NEITLPGGRM 112
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
++ + +A+ L+ EL AD+ R V + G Q + + K L +
Sbjct: 113 A-YNAMYLRAK------------NLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKI 326
LL+LDEP++ L E L L V V ISH + +C I
Sbjct: 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTI 211
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-10
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 54/220 (24%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMG 472
+ +++ KNL Y ++ ++I + TA+IGP+GCGKSTLL+ LI G
Sbjct: 2 TMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPG 61
Query: 473 -------------LEKPRGGEVLLGEH--------NVLPNYFEQNQA---------EALD 502
+ V L N P +N A
Sbjct: 62 CRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKT 121
Query: 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKP 561
LD V +++ AA W D++K D L LSGG++ RL + + V P
Sbjct: 122 LDTIVEKSLKGAAL-W--DEVK----------DRLHDSALSLSGGQQQRLCIARTLAVNP 168
Query: 562 STLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+L +DEP + LD + +E+ I + K TVI V+H+
Sbjct: 169 EVIL-MDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHN 207
|
Length = 253 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-10
Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 53/222 (23%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPRGG 479
I+NL+ Y + NL I + TA+IGP+GCGKSTLL+ LI G++ G
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKIT--G 63
Query: 480 EVLLGEHNVL------------------PNYFE----QNQAEALDL----DKTVLETVAE 513
++ + ++ PN F +N A L DK VL+ V E
Sbjct: 64 KLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVE 123
Query: 514 ----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
A W D++K D L LSGG++ RL + + ++++DE
Sbjct: 124 RSLRGAALW--DEVK----------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDE 171
Query: 570 PTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNR 609
PT+ LD + +EE + E K T++ V+H ++I +R
Sbjct: 172 PTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDR 213
|
Length = 249 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE- 499
N A+L I +GE I+G +G GKST ++++ L +P G++ + N++ +Q+ E
Sbjct: 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIM----KQSPVEL 65
Query: 500 ---------------ALDLDKTVLETVAEAAEDWRID---------DIKGLLGRCNFKAD 535
AL T+L+ + E ++ L+G +
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY--- 122
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAISEYKG--- 591
R LSGG + R+ + + +L++DE + LD + M +E
Sbjct: 123 -EHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK 181
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGSNL 618
T++ ++HD +I +R+V +K +
Sbjct: 182 TIVFITHDLDEAIRIGDRIVIMKAGEI 208
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 50/207 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN++ Y +L D++ + G+ L+G NG GK+T L+ A P SG V
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 155 ---IKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
I S+ ++A L Q TVRE + A+ G+ +
Sbjct: 63 DKPISMLSSRQLARRLALLPQHHLTPEGITVRE--LVAY-------GRSPWL-------- 105
Query: 208 DDMDLMGRLLDEFD--LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L GRL E D + + + ++ L DR + S G +
Sbjct: 106 ---SLWGRLSAE-DNARVNQAMEQTRINHL-----------------ADRRLTDLSGGQR 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDL 292
R L +L QD ++LLDEPT +LD+
Sbjct: 145 QRAFLAMVLAQDTPVVLLDEPTTYLDI 171
|
Length = 255 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 45/184 (24%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---------------NVLPNYFE 494
G+ ++GPNG GKST LK++ G KP LG+ + L NYF
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPN-----LGKFDDPPDWDEILDEFRGSELQNYFT 80
Query: 495 QNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
+ + + V E + + E ++D++ L + +LDR
Sbjct: 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH----VLDRN 136
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA-----ISEYKGTVIT 595
+ LSGGE R+A + + + DEP+++LDI K+ L A ++E V+
Sbjct: 137 IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI--KQRLNAARLIRELAEDDNYVLV 194
Query: 596 VSHD 599
V HD
Sbjct: 195 VEHD 198
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 2e-10
Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 40/221 (18%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLE 474
+++ +NL Y D N N+ I + TA+IGP+GCGKST L+ L+ G++
Sbjct: 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 475 KPRGGEVLLGEHNVLPNYFEQNQAEALDLDK---TVLET-----------------VAEA 514
G V+ N+ N F + L+L + V +T +
Sbjct: 65 IE--GNVIYEGKNIYSNNF-----DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGT 117
Query: 515 AEDWRIDDI--KGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ ++D+I + L N D L+ LSGG++ RL + + ++++DEP
Sbjct: 118 KDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177
Query: 571 TNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNR 609
T+ LD S +EE I K T+I V+H+ +I +R
Sbjct: 178 TSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDR 218
|
Length = 254 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 60/207 (28%), Positives = 94/207 (45%), Gaps = 39/207 (18%)
Query: 424 VVTIKNLEFGYED------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++ KN+ + YE +L + NL +++GE I+G NG GKST+ K + L P
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 478 GGEVLL------GEHN----------VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI- 520
G+V + E N V N NQ A V E VA E+ I
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQN--PDNQIVA----TIVEEDVAFGPENLGIP 117
Query: 521 -DDIKGLLGRCNFKADMLDRK---VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
++I+ + K M + + LLSGG+K R+A + ++ DEPT LD
Sbjct: 118 PEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD- 176
Query: 577 PS--KEML---EEAISEYKGTVITVSH 598
PS +E++ +E +Y T+I ++H
Sbjct: 177 PSGRREVVNTIKELNKKYGITIILITH 203
|
Length = 280 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 2e-10
Identities = 73/245 (29%), Positives = 111/245 (45%), Gaps = 29/245 (11%)
Query: 376 LGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGR-SVVTIKNLEFGY 434
LG S R A +K E L EE +E P + + F ER G V +KNL +
Sbjct: 881 LGGEGCSTREERALEKTEPLTEE--MEDPEHPEGINDSFFERELPGLVPGVCVKNLVKIF 938
Query: 435 E--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNY 492
E R +R N+T + TA +G NG GK+T L ++ GL P G VL+G ++ N
Sbjct: 939 EPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNL 998
Query: 493 FEQNQAEALDLDKTVL---ETVAEAAEDWRIDDIKGLLGRCNFKAD-----MLD------ 538
Q+ + +L TVAE I L GR +A ML+
Sbjct: 999 DAVRQSLGMCPQHNILFHHLTVAE-----HILFYAQLKGRSWEEAQLEMEAMLEDTGLHH 1053
Query: 539 ---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TV 593
+ LSGG + +L+ V + ++VLDEPT+ +D S+ + + + +Y+ T+
Sbjct: 1054 KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTI 1113
Query: 594 ITVSH 598
I +H
Sbjct: 1114 IMSTH 1118
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 67/226 (29%), Positives = 94/226 (41%), Gaps = 53/226 (23%)
Query: 415 PERGR---SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
PER + G+ V KN Y + + N I TAIIGP+GCGKST L+ I
Sbjct: 27 PERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAIN 86
Query: 472 GL-----------------EKPRG---GEVLLGEH--------NVLPNYFEQNQAEALDL 503
+ E G EVLL + N P N A L
Sbjct: 87 RMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRL 146
Query: 504 ----DKTVLETVAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555
DK LE + E A W D++ D LD+ LSGG++ RL
Sbjct: 147 HGINDKKQLEEIVEKSLRKAALW--DEVS----------DRLDKNALGLSGGQQQRLCVA 194
Query: 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+ + +L+LDEPT+ LD + +E+ I E +G T++ V+H+
Sbjct: 195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHN 240
|
Length = 286 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 34/196 (17%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV---------LLGEHNVLPNYFE- 494
L+++ GE A++G +GCGKSTL +L++GLE P G V L F
Sbjct: 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQR---KAFRR 89
Query: 495 ------QNQAEALDLDKTVLETVAE---------AAEDWRIDDIKGLLGRCNFKADMLDR 539
Q+ A++ KTV E + E AE R+ +L + +LD+
Sbjct: 90 DIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE--RLARASEMLRAVDLDDSVLDK 147
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EMLE--EAISEYKGTV-IT 595
+ LSGG+ R+ + + LL+LDE ++LD+ + ++ + + + GT +
Sbjct: 148 RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLF 207
Query: 596 VSHDRYFVKQIVNRVV 611
++HD V++ RV+
Sbjct: 208 ITHDLRLVERFCQRVM 223
|
Length = 268 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 40/202 (19%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
L G+ +IIG +G GKST L+ I LEKP G + + + + Q + D
Sbjct: 27 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKR 86
Query: 505 K---------------------TVLETVAEA-------AEDWRIDDIKGLLGRCNFKADM 536
+ TVLE V EA ++ I+ + L + A+
Sbjct: 87 QLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGI-AEK 145
Query: 537 LDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEMLEE------AISEY 589
D + LSGG++ R+A + + ++P +L DEPT+ LD E++ E ++E
Sbjct: 146 ADAYPAHLSGGQQQRVAIARALAMEPEVML-FDEPTSALD---PELVGEVLKVMQDLAEE 201
Query: 590 KGTVITVSHDRYFVKQIVNRVV 611
T++ V+H+ F + + + V+
Sbjct: 202 GRTMVVVTHEMGFARDVSSHVI 223
|
Length = 256 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 31/231 (13%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ NISKS+ GV L +V +V+ L+G NGAGK+T L+ + G + DSG+++
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL---- 56
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
F +E + S+ E +S +E+ + L+R S +D+M L GR
Sbjct: 57 -----FQGKEIDFKSSKEALENGISMVHQELNLV--LQR------SVMDNMWL-GR---- 98
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM-SLGKILLQDP 278
K V+ D + + EL D + VA+ S QM+M + K +
Sbjct: 99 ---YPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-VATLSVS-QMQMIEIAKAFSYNA 153
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326
++++DEPT+ L + L + K + +V ISH + QLC +I
Sbjct: 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEI 204
|
Length = 491 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 60/235 (25%), Positives = 90/235 (38%), Gaps = 76/235 (32%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++L++ Y D N E+GE A++GPNG GKSTL G+ KP GEVL
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 483 LGEHNVLPNYFEQNQAEALDLDK------------------------TVLETVAEAAEDW 518
+ + E + DK TV E VA
Sbjct: 61 I-------------KGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVA------ 101
Query: 519 RIDDIKGLLGRCNFKADMLD---------RKVSL----------LSGGEKARLAFCKFMV 559
G N + + V + LSGG+K R+A +
Sbjct: 102 --------FGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA 153
Query: 560 KPSTLLVLDEPTNHLDIP---SKEM-LEEAISEYKGTVITVSHDRYFVKQIVNRV 610
++VLDEPT+ LD P S+ M L +++ T+I +HD V ++V
Sbjct: 154 MKPEIIVLDEPTSGLD-PMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKV 207
|
Length = 275 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 3e-10
Identities = 59/213 (27%), Positives = 90/213 (42%), Gaps = 52/213 (24%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRG---GEV 481
+ L F Y N+ + + TA+IGP+GCGKST L+ + P GE+
Sbjct: 19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI 78
Query: 482 LLGEHNV---------------------LPNYFE----QNQAEALDLD----KTVLETVA 512
+L NV PN F +N A L + +++LE
Sbjct: 79 ILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERV 138
Query: 513 E----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
E A W D++K LG F LSGG++ RL + + +L+ D
Sbjct: 139 ENALRNAALW--DEVKDRLGDLAFN----------LSGGQQQRLCIARALATDPEILLFD 186
Query: 569 EPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
EPT+ LD + +EE IS+ K T++ V+H+
Sbjct: 187 EPTSALDPIATASIEELISDLKNKVTILIVTHN 219
|
Length = 265 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 3e-10
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 54/216 (25%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKP 476
+ ++NL ++D + NL I + TA+IGP+GCGKST ++ LI G
Sbjct: 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHE 62
Query: 477 RGGEVLLG-----------------------EHNVLPNYFEQNQAEALDL----DKTVLE 509
G + L + N P N A L + D+ +E
Sbjct: 63 --GHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 510 TVAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
E AA W D++K D LD+ LSGG++ RL + + ++
Sbjct: 121 ERVEESLKAAALW--DEVK----------DKLDKSALGLSGGQQQRLCIARTIAVSPEVI 168
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++DEP + LD S +E+ I + K T++ V+H+
Sbjct: 169 LMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-10
Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 44/176 (25%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
+++I + G +G GKSTL+ + L P +
Sbjct: 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFL------PKFSRN----- 60
Query: 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM------LDRKVSLLSGGEKARLAF 554
K + ID ++ L+ D+ L +K+S LSGGE R+
Sbjct: 61 ----KLI-----------FIDQLQFLI-------DVGLGYLTLGQKLSTLSGGELQRVKL 98
Query: 555 CKFMVKPS--TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQ 605
+ TL +LDEP+ L L E I TVI + H+ +
Sbjct: 99 ASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 3e-10
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 26/201 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----G 479
+ I+ + F Y + N+ + TAIIGP+GCGKSTLL+ + + G
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG 64
Query: 480 EVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
VLL N+ PN F ++ + + +L T A++ D +
Sbjct: 65 AVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVV 124
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
+ + D L + LSGG++ RL + + ++++DEP + LD S
Sbjct: 125 EKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTM 184
Query: 581 MLEEAISEYKG--TVITVSHD 599
+EE + E K T+ V+H+
Sbjct: 185 RIEELMQELKQNYTIAIVTHN 205
|
Length = 251 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 39/236 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIK 156
K++++ S + +LK V VKKGE ++G NG+GK+T + IAG E SG ++
Sbjct: 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLERVQKALES-----AVDD 209
++ E+ R AF+ EI G LE ++ AL + +
Sbjct: 62 KGQDL--------LELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEP 113
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+DL+ D LL+ K + +D S + FS G + R
Sbjct: 114 LDLL----DFLKLLKAKLALLGMDEEFLNRS---------------VNEGFSGGEKKRNE 154
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322
+ ++ L +P L +LDE + LD+D ++ + + + D +II+H + L+ +
Sbjct: 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYI 210
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 56/219 (25%)
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV-----REEF 182
L G +G+GKT+ + +IAG PD G + L+ V + + +
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIE----------LNGRVLVDAEKGIFLPPEKRRI 78
Query: 183 MSAFKE-----EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
F++ + G L S D + LL LL R
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGMWK--SMRAQFDQLVALLGIEHLLDR------------ 124
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT--- 294
P + S G + R+++G+ LL P+LLL+DEP LDL
Sbjct: 125 -----YPG-------------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166
Query: 295 -IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+ +LE + ++P++ +SH + +L ++V E G
Sbjct: 167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENG 205
|
Length = 352 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 4e-10
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 24/153 (15%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE----------- 494
T+ERG+ A++G +GCGKSTL +L+ +E P GGE+ ++L E
Sbjct: 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQI 96
Query: 495 --QNQAEALDLDKTVLETVAE---------AAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
QN +L+ K V + + E AAE R + ++ + + + DR +
Sbjct: 97 VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAE--RREKALAMMAKVGLRPEHYDRYPHM 154
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
SGG++ R+A + ++ ++V DEP + LD+
Sbjct: 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
|
Length = 327 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 4e-10
Identities = 51/237 (21%), Positives = 107/237 (45%), Gaps = 22/237 (9%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
++ K Y VLK V+ + G+ + ++G +G+GK+T LR I E+P G+++
Sbjct: 10 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT- 68
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+++ R + A K ++ + ++ L +L + +
Sbjct: 69 ----------INLVRDKDGQLKVADKNQLRL------LRTRLTMVFQHFNLWSHMTVLEN 112
Query: 222 LLQRKAQAVNLDTLDAK--VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
+++ Q + L +A+ K + ++G + S G Q R+S+ + L +P+
Sbjct: 113 VMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE 172
Query: 280 LLLLDEPTNHLDLDTI-EWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
+LL DEPT+ LD + + E L L ++ MV+++H+ F + + ++ G
Sbjct: 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229
|
Length = 257 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 4e-10
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 27/202 (13%)
Query: 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++V K++ F Y D + N + +I RG TA+IG NG GKST+ KLI GL P
Sbjct: 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP 63
Query: 481 --------VLLGEHNVLPNYFE------QNQAEALDLDKTVLETVAEAAEDWRI--DDIK 524
+ L V + E QN + TV + VA E+ + ++
Sbjct: 64 NSKITVDGITLTAKTVW-DIREKVGIVFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMI 121
Query: 525 GLLGRCNFKADMLD---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
++ MLD + + LSGG+K R+A + +++LDE T+ LD KE
Sbjct: 122 KIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181
Query: 582 LEEAISEYKG----TVITVSHD 599
+ + I + K TVI+++HD
Sbjct: 182 ILKLIRKLKKKNNLTVISITHD 203
|
Length = 282 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 4e-10
Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 42/234 (17%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + +S Y + L +V+ + +GE V L+G NGAGKTT L + G SG ++
Sbjct: 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV-- 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
F ++ ++ +T + +E + I + RV + V++ MG
Sbjct: 64 -------FDGKD--ITDWQTAK-----IMREAVAIVPEGRRVFSRM--TVEENLAMGGFF 107
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
E D Q + V +L P L + + + S G Q +++G+ L+
Sbjct: 108 AERDQFQERI---------KWVYELFPRL---HERRIQRAGTMSGGEQQMLAIGRALMSQ 155
Query: 278 PDLLLLDEPTNHLD-------LDTIEWL--EG---YLGKQDVPMVIISHDRAFL 319
P LLLLDEP+ L DTIE L +G +L +Q+ + DR ++
Sbjct: 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYV 209
|
Length = 237 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 5e-10
Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 54/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
+ L+ + Y+ + + D+ V GE V ++G +GAGK+T L +IAG EP SG++ +
Sbjct: 1 LALDKVRYEYEHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVN 58
Query: 157 AKSNMKIA-------FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+S+ +A L QE + TVR+ + KL Q+
Sbjct: 59 DQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL----KLNAEQQEKVVDA-- 112
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
AQ V + D DRL S G + R++
Sbjct: 113 -----------------AQQVGIA-----------------DYLDRLPEQLSGGQRQRVA 138
Query: 270 LGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L + L++ +LLLDEP + LD + + ++ ++ +++++H + + ++
Sbjct: 139 LARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198
Query: 326 IVETEMG 332
I G
Sbjct: 199 IAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 51/258 (19%), Positives = 103/258 (39%), Gaps = 66/258 (25%)
Query: 99 KLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++N+S S+ V + V++E+KKGE +G+VG +G+GK+ + I G P
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG-LLPKPNAR 61
Query: 155 IKAKS----NMKIAFLSQEF-------EVSM-----------SRTVREEFMSAFKEEMEI 192
I + LS++ E++M T+ ++ + +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
K E ++A+E LL+ V + + + K P
Sbjct: 122 LSKKEAKERAIE-----------------LLEL----VGIPDPE-RRLKSYPH------- 152
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVP 308
S G + R+ + L +P LL+ DEPT LD+ ++ L+ ++
Sbjct: 153 ------ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTA 206
Query: 309 MVIISHDRAFLDQLCTKI 326
+++I+HD + ++ ++
Sbjct: 207 LILITHDLGVVAEIADRV 224
|
Length = 316 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 5e-10
Identities = 58/249 (23%), Positives = 120/249 (48%), Gaps = 40/249 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
V+ +++K + +TVL + + V GEKV L+G +G+GK+T LRI+ E D G + ++
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL-----ESAVDDMD 211
+ + + + + +R ++ K+ V ++ ++ +D++
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLR-----------QMRNKIGMVFQSFNLFPHKTVLDNVT 109
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L+ L +A+A + + +L+ +G AD D + A S G Q R+++
Sbjct: 110 EAPVLV----LGMARAEA------EKRAMELLDMVGL-ADKADHMPAQLSGGQQQRVAIA 158
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD----RAFLDQLC 323
+ L P ++L DE T+ LD + + + + + D+ M++++H+ R F D++C
Sbjct: 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218
Query: 324 ----TKIVE 328
+IVE
Sbjct: 219 FFDKGRIVE 227
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 5e-10
Identities = 58/216 (26%), Positives = 89/216 (41%), Gaps = 50/216 (23%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI-----MGLEKP 476
+ V I + Y NL+I E TAIIGP+GCGKST +K + M
Sbjct: 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVK 69
Query: 477 RGGEVLLGEHNVLP-------------------NYFEQN---------QAEALDLDKTVL 508
GE+ N+L N F Q+ + K +
Sbjct: 70 LTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQ 129
Query: 509 ETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
E V ++ +D W D++K D L + LSGG++ RL + + +L
Sbjct: 130 EIVEKSLKDVALW--DEVK----------DRLHTQALSLSGGQQQRLCIARALATNPDVL 177
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++DEPT+ LD S +EE I + K T++ V+H+
Sbjct: 178 LMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHN 213
|
Length = 259 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 5e-10
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 28/206 (13%)
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
L F + +F + ++ GE + G NG GK+TLL+++ GL G++ +
Sbjct: 17 LAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT 76
Query: 490 PNYFEQNQA-----EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK----------- 533
+ A L D + LE + + GL GR +
Sbjct: 77 RGDRSRFMAYLGHLPGLKADLSTLEN---------LHFLCGLHGRRAKQMPGSALAIVGL 127
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---K 590
A D V LS G+K RLA + + P+ L +LDEP +LD+ ++ IS +
Sbjct: 128 AGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGG 187
Query: 591 GTVITVSHDRYFVKQIVNRVVEVKGS 616
G + +H Y + R++ ++ +
Sbjct: 188 GAALVTTHGAYAAPPVRTRMLTLEAA 213
|
Length = 214 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 22/177 (12%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
EF + +F+ + + G+ AI+GP G GK+TL+ L+ + P G++L+ ++
Sbjct: 341 TFEFANSSQGVFD-VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399
Query: 489 -------LPNYFEQNQAEALDLDKTV------------LETVAEAAEDWRIDDIKGLLGR 529
L +A ++++ E V EAA+ D +L R
Sbjct: 400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDF--ILKR 457
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
N ++ + + LSGGE+ RLA + ++K + +LVLDE T+ LD+ ++ ++ AI
Sbjct: 458 SNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI 514
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 5e-10
Identities = 60/239 (25%), Positives = 96/239 (40%), Gaps = 63/239 (26%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRIIAGQEEPDSGNVIKAKSNMKIAFL 166
V+K++++ ++ GE +GLVG +G+GK+T LR+I Q E I F
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGE--------------IWFD 345
Query: 167 SQEFEVSMSRT---VREEFMSAFKE-----------EMEIAGKLERVQKALESAVDDMDL 212
Q R VR F++ I L Q L +A
Sbjct: 346 GQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA------ 399
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
QR+ Q V +M E+G + R A FS G + R+++ +
Sbjct: 400 -----------QREQQ----------VIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIAR 438
Query: 273 ILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
L+ P L++LDEPT+ LD + L+ K + + ISHD + LC +++
Sbjct: 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI 497
|
Length = 529 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 6e-10
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 48/214 (22%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL----KLIMGLEKPR 477
+ + I++L+ + + + NL I TA++GP+G GKSTLL +LI + R
Sbjct: 1 MNKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 478 -GGEVLLGEHNV-----------------LPN------YFEQNQAEALDLDKTV------ 507
GEV L ++ +PN FE N A L L++ V
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFE-NVALGLKLNRLVKSKKEL 119
Query: 508 LETVAEAAEDWRI-DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566
E V A E ++ D++K D LD LSGG++ RL + + +L+
Sbjct: 120 QERVRWALEKAQLWDEVK----------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLL 169
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
DEPT +LD + +E E K T++ V+H
Sbjct: 170 ADEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-10
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 43/191 (22%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
N +L + GE I+G +G GKSTLL+ I L +P G+VL+ ++ ++ E
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA----AMSRKEL 96
Query: 501 LDLDK----------------TVLETVAEAAEDWRIDDIKGL------------LGRCNF 532
+L + TVLE VA E ++G+ L
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLE------VQGVPRAEREERAAEALELVGL 150
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAI---SE 588
+ + LSGG + R+ + + +L++DE + LD + +EM +E + +E
Sbjct: 151 E-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 589 YKGTVITVSHD 599
+ T++ ++HD
Sbjct: 210 LQKTIVFITHD 220
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 7e-10
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 54/216 (25%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKP----- 476
++ I+N Y ++ + I + + TAIIGP+GCGK+TLL+ I M P
Sbjct: 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62
Query: 477 -----RGGEVLLGEHNV----------------LPNYFEQNQAEALD---------LDKT 506
+G ++ + +V P N A LD+
Sbjct: 63 GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI 122
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566
V E++ +AA W D++K L++ + LSGG++ RL + + +++
Sbjct: 123 VEESLKKAAL-W--DEVK----------SELNKPGTRLSGGQQQRLCIARALAVEPEVIL 169
Query: 567 LDEPTNHLD-IPSK--EMLEEAISEYKGTVITVSHD 599
LDEPT+ LD I ++ E L E +SE T++ V+H+
Sbjct: 170 LDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 9e-10
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 38/204 (18%)
Query: 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y + N I G+ A++G +G GKST+ L+ GE+L
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401
Query: 483 LGEHNV----LPNYFEQ-----------------NQAEALDLDKTVLETVAEAAED-WRI 520
L H++ L + Q N A A ++ E + EAA + +
Sbjct: 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART-EQYSREQIEEAARMAYAM 460
Query: 521 DDIKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
D I + + LD + LLSGG++ R+A + +++ S +L+LDE T+ LD
Sbjct: 461 DFINKM-------DNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 577 PSKEMLEEAISEYKG--TVITVSH 598
S+ ++ A+ E + T + ++H
Sbjct: 514 ESERAIQAALDELQKNRTSLVIAH 537
|
Length = 582 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 9e-10
Identities = 59/231 (25%), Positives = 97/231 (41%), Gaps = 40/231 (17%)
Query: 401 IEKPF------QRKQMKIRFPERGRSGRSVVTIKNLEFGYE-DRLLFNRANLTIERGEKT 453
+EK F P V N+ F Y+ R + N + TI G+
Sbjct: 233 MEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTV 292
Query: 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL--DKTVL--- 508
AI+G +G GKST+L+L+ G + + + + + +Q+ A+ + TVL
Sbjct: 293 AIVGESGAGKSTILRLLFRFYDVNSGSITIDGQD-IRDVTQQSLRRAIGIVPQDTVLFND 351
Query: 509 ---------------ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS----LLSGGEK 549
E V AAE +I D L + D V LSGGEK
Sbjct: 352 TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL------PEGYDTGVGERGLKLSGGEK 405
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
R+A + ++K +L+LDE T+ LD +++ ++ A+ E T + ++H
Sbjct: 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAH 456
|
Length = 497 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 53/215 (24%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-------KAKSNMKIAF 165
LK V +++GE + L+G +G GK+T L +I+G +P SG VI + + + F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD-MDLMGRLLDEFDLLQ 224
Q + + TVRE A + K ER + V++ + L+G L
Sbjct: 61 --QNYSLLPWLTVRENIALAVDRVLPDLSKSER-----RAIVEEHIALVG--------LT 105
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
A D+ S G + R+++ + L P +LLLD
Sbjct: 106 EAA--------------------------DKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139
Query: 285 EPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
EP LD T L+ L + V +++++HD
Sbjct: 140 EPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 28/211 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I+ + + D+ + + + GE ++GPNG GK+T ++I+GL +P GE+
Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN 62
Query: 485 EHNV----------LPNYFEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLL 527
+ LP + L TV + + AE + + ++ L
Sbjct: 63 GGPLSQEIKNRIGYLP------EERGLYPKMTVEDQLKYLAELKGMPKAEIQK-KLQAWL 115
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
R K+ LS G + ++ F ++ LL+LDEP + LD + E+L++AI
Sbjct: 116 ERLEIVGKKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIF 174
Query: 588 EYK---GTVITVSHDRYFVKQIVNRVVEVKG 615
E K T+I SH V+++ +R++ +K
Sbjct: 175 ELKEEGATIIFSSHRMEHVEELCDRLLMLKK 205
|
Length = 300 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-09
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 46/189 (24%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IKAKSNMKIAFLSQEF 170
V + + V GE + + G NGAGKTT LR++AG +SG + I K+
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA---------- 75
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+R R FM+ G L ++ L S ++++
Sbjct: 76 ----TRGDRSRFMAYL-------GHLPGLKADL-STLENLHF------------------ 105
Query: 231 NLDTLDAKVSKLMPELGFT----ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
L L + +K MP A D LV S+G + R++L ++ L L LLDEP
Sbjct: 106 -LCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164
Query: 287 TNHLDLDTI 295
+LDL+ I
Sbjct: 165 YANLDLEGI 173
|
Length = 214 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 1e-09
Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 54/215 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----G 479
+ +K+L F Y ++ I R + TAIIGP+GCGKST +K + + + G G
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG 67
Query: 480 EVLLGEHNVL-------------------PNYFEQNQAE-------------ALDLDKTV 507
V N+ PN F + E DLD+ V
Sbjct: 68 VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIV 127
Query: 508 LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E+ + A W ++K D L++ LSGG++ RL + + +KP LL
Sbjct: 128 -ESALKGAALW--QEVK----------DKLNKSALGLSGGQQQRLCIARALAIKPKVLL- 173
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+DEP + LD + +EE I + T+ V+H+
Sbjct: 174 MDEPCSALDPIATMKVEELIHSLRSELTIAIVTHN 208
|
Length = 259 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 50/192 (26%), Positives = 71/192 (36%), Gaps = 40/192 (20%)
Query: 453 TAIIGPNGCGKSTLLKLI-MGL--EKPRGGEVLLGEHNVLPNYFEQNQAEA-------LD 502
T I+G NG GK+T+++ + L E P + G H P + + A
Sbjct: 25 TLIVGQNGAGKTTIIEALKYALTGELPPNSK--GGAH--DPKLIREGEVRAQVKLAFENA 80
Query: 503 LDKTVLET----VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKA------RL 552
K T + E + L DM R SGGEK RL
Sbjct: 81 NGKKYTITRSLAILENVIFCHQGESNWPL------LDMRGR----CSGGEKVLASLIIRL 130
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEM-LEEAISEYKGT----VITVSHDRYFVKQIV 607
A + +L LDEPT +LD + E L E I E K +I ++HD V
Sbjct: 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA- 189
Query: 608 NRVVEVKGSNLQ 619
+ + V+ Q
Sbjct: 190 DHIYRVEKDGRQ 201
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 1e-09
Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 44/163 (26%)
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVL 508
GE I+GP G GK+TL + + P GG V+ +D + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY-----------------IDGEDILE 43
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
E + + ++ K + SG + RLA +L+LD
Sbjct: 44 EVLDQLLL------------------IIVGGKKASGSGELRLRLALALARKLKPDVLILD 85
Query: 569 EPTNHLDIPSKEMLEEAI---------SEYKGTVITVSHDRYF 602
E T+ LD + +L SE TVI ++D
Sbjct: 86 EITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ------ 497
+ +E G A++G G GKSTL++ L KP G + + +++ P +N
Sbjct: 27 SFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKK 86
Query: 498 -------AEALDLDKTVLETVA------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
EA + TVL+ V +ED + L + D++ + L
Sbjct: 87 VSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFEL 146
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHD 599
SGG+ R+A M +L LDEP LD ++ + + +Y+ TVI V+H+
Sbjct: 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204
|
Length = 287 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 30/208 (14%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI--AFLSQEFEVSMSRT 177
++G+ +GLVG NG GK+T L+I+AG+ +P+ G +I F E + ++
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
+ + K + ++ + KA++ V +LL++K + LD L
Sbjct: 83 LEGDVKVIVKPQY-----VDLIPKAVKGKVG------------ELLKKKDERGKLDEL-V 124
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD---T 294
+L L DR + S G R+++ L +D D DEP+++LD+
Sbjct: 125 DQLELRHVL-------DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLN 177
Query: 295 IEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L L + D ++++ HD A LD L
Sbjct: 178 AARLIRELAEDDNYVLVVEHDLAVLDYL 205
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 54/240 (22%), Positives = 112/240 (46%), Gaps = 36/240 (15%)
Query: 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENIS----KSYKGVTVLK 114
I +A++ +E F F+ ++ ++ ++ V+ +I+ S +GV
Sbjct: 299 IFEARAKLEDFFDLEDSVFQREEPADAPE---LPNVKGAVEFRHITFEFANSSQGV---F 352
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174
DV++E K G+ V +VG GAGKTT + ++ +P G ++ + I +++E S+
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID--INTVTRE---SL 407
Query: 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234
+++ F A I E ++ E A D+ ++ + A D
Sbjct: 408 RKSIATVFQDAGLFNRSIR---ENIRLGREGATDE-----------EVYEAAKAAAAHDF 453
Query: 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ + + +G + G+RL S G + R+++ + +L++ +L+LDE T+ LD++T
Sbjct: 454 ILKRSNGYDTLVG---ERGNRL----SGGERQRLAIARAILKNAPILVLDEATSALDVET 506
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 51/207 (24%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG---GEVLLGEHNV 488
Y D+ NL ++RG A+IGP+GCGK+T L+ I M P G +LL ++
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73
Query: 489 L-------------------PNYFE-----QNQAEALDL----DKTVLETVAE----AAE 516
PN F N L L D+ L VAE A
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAA 133
Query: 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
W D++K D L + LSGG++ RL + + +L++DEPT+ LD
Sbjct: 134 LW--DEVK----------DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDP 181
Query: 577 PSKEMLEEAISEYKG--TVITVSHDRY 601
S +E+ +++ K T+I V+H+ +
Sbjct: 182 ASTARIEDLMTDLKKVTTIIIVTHNMH 208
|
Length = 252 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 25/188 (13%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493
+ R LF+ +L +++G TA+IG G GKSTLL+ + GL +P G+V +G+ V+ +
Sbjct: 17 FASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD-IVVSSTS 74
Query: 494 EQNQ--------------AEALDLDKTVLETVAEAAEDWRIDDIKG------LLGRCNFK 533
+Q + E+ ++TVL+ VA +++ I K L
Sbjct: 75 KQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA 134
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EMLE--EAISEYK 590
+ ++ LSGG+ R+A + +LVLDEPT LD ++ EM++ E+I +
Sbjct: 135 DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG 194
Query: 591 GTVITVSH 598
TV+ V+H
Sbjct: 195 QTVVLVTH 202
|
Length = 288 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 49/195 (25%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---------GNVIKAKSNM 161
+LK+V+ K GE + ++G +GAGKTT + +A + G I AK
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMR 98
Query: 162 KIAFLSQEFEVSM-SRTVREE--FMSAFK--EEMEIAGKLERVQKALESAVDDMDLMGRL 216
I+ Q+ ++ + + TVRE F + + + K ERV + L+ + L
Sbjct: 99 AISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQ----ALGL---- 150
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
RK +T G V S G + R++ LL
Sbjct: 151 --------RKCA----NTR-------------IGVPGR--VKGLSGGERKRLAFASELLT 183
Query: 277 DPDLLLLDEPTNHLD 291
DP LL DEPT+ LD
Sbjct: 184 DPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 61/262 (23%), Positives = 118/262 (45%), Gaps = 35/262 (13%)
Query: 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+G+ + +++ +++ G T L+D ++ V G LVGVNG+GK+T + + G SG
Sbjct: 4 QAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK 63
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
I+ L Q + +++ ++ + E V + V+D+ +M
Sbjct: 64 ---------ISILGQ----PTRQALQKNLVAYVPQS-------EEVDWSFPVLVEDVVMM 103
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKL-MPELGFTADDGDRLVASFSSGWQMRMSLGK 272
GR L R+A+ + + A ++++ M E R + S G + R+ L +
Sbjct: 104 GR-YGHMGWL-RRAKKRDRQIVTAALARVDMVEFRH------RQIGELSGGQKKRVFLAR 155
Query: 273 ILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDRAFLDQLC--TKIV 327
+ Q ++LLDEP +D+ T I L L + M++ +H+ + + C T +V
Sbjct: 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215
Query: 328 ETEMGVSRTYEGNYSQYVLEKA 349
+ + S E ++ LE A
Sbjct: 216 KGTVLASGPTETTFTAENLELA 237
|
Length = 272 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (141), Expect = 2e-09
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 21/197 (10%)
Query: 424 VVTIKNLEFGYEDRLLFNRAN---LTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRGG 479
++ ++NL F YE N+ N +I +GE +IIG NG GKST +LI GL E+ G
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDK--------TVLETVAEAAEDWRI--DDIKGLLGR 529
+ GE N + + + TV + VA E+ I +++ +
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDE 123
Query: 530 CNFKADMLD---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
+MLD R+ + LSGG+K R+A + +++LDE T+ LD ++ + I
Sbjct: 124 ALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183
Query: 587 SE----YKGTVITVSHD 599
E Y+ TV++++HD
Sbjct: 184 HEIKEKYQLTVLSITHD 200
|
Length = 277 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 53/226 (23%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL-----------------K 468
++KNL Y + + NL I + E TA IGP+GCGKST L +
Sbjct: 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGE 66
Query: 469 LI---MGLEKPRGGEVLL--------GEHNVLPNYFEQNQA-----EALDLDKTVLETVA 512
L + + VLL + N P N A L +K L+ +
Sbjct: 67 LDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIV 126
Query: 513 EAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVL 567
E + W +++ L F+ LSGG++ RL + + VKP T+L++
Sbjct: 127 EKSLTSVGLW--EELGDRLKDSAFE----------LSGGQQQRLCIARAIAVKP-TMLLM 173
Query: 568 DEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVV 611
DEP + LD + ++E I E K T+I V+H K++ +RV
Sbjct: 174 DEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVA 219
|
Length = 251 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 3e-09
Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 56/209 (26%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ E++SK+Y G L+ VT+ ++ GE L G +GAGK+T L++I G E P +G +
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 155 ----IKAKSNMKIAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAG-KLERVQKA 202
I N ++ FL Q+ + M RTV + + IAG + +++
Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIP----LIIAGASGDDIRRR 117
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ +A+D + L+ D S
Sbjct: 118 VSAALDKVGLL-------------------------------------DKAKNFPIQLSG 140
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G Q R+ + + ++ P +LL DEPT +LD
Sbjct: 141 GEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
Length = 222 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 33/249 (13%)
Query: 101 ENISKSY-----KGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
N+SK++ GV VL++V+ V GE V L G +G+GK+T LR + PD G
Sbjct: 8 SNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ 67
Query: 154 VIKAKSNMKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
++ + ++ E EV R ++S F + L+ V + L
Sbjct: 68 ILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL--------- 118
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
A+ V + AK + L+ L A+FS G Q R+++ +
Sbjct: 119 -------------LARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIAR 165
Query: 273 ILLQDPDLLLLDEPTNHLDL---DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
+ D +LLLDEPT LD + L + +V I HD + + ++++
Sbjct: 166 GFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225
Query: 330 EMGVSRTYE 338
R
Sbjct: 226 SAFSPRKEA 234
|
Length = 235 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 3e-09
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 36/234 (15%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L ++K Y G + + + V+ GE GL+GVNGAGKTT +++ G SG+
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
A ++ L+ +V + +F A+DD+ L GR
Sbjct: 1998 VAGKSI----LTNISDVHQNMGYCPQF----------------------DAIDDL-LTGR 2030
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
E L + + V + ++ + + LG + DRL ++S G + ++S L+
Sbjct: 2031 ---EHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRKLSTAIALI 2086
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326
P L+LLDEPT +D L + ++ +V+ SH + LCT++
Sbjct: 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRL 2140
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 33/194 (17%)
Query: 430 LEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
LE ++ +L L NLT+ TAI G +G GK++L+ I GL +P+ G ++L
Sbjct: 2 LELNFKQQLGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGR- 60
Query: 488 VLPNYFEQNQAEALDLDK----------------TV---LETVAEAAEDWRIDDIKGLLG 528
VL F+ + L +K V L + + D I LLG
Sbjct: 61 VL---FDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLG 117
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EM---LEE 584
+LDR LSGGEK R+A + ++ LL++DEP LD+P K E+ LE
Sbjct: 118 ----IEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173
Query: 585 AISEYKGTVITVSH 598
E ++ VSH
Sbjct: 174 LAREINIPILYVSH 187
|
Length = 352 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 28/204 (13%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGE 480
++ IKNL + + NL+I +GE AI+GPNG GKSTL K+I G K G+
Sbjct: 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGD 65
Query: 481 VLLGEHNVL----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524
+L ++L E D + + + +D ++
Sbjct: 66 ILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE 125
Query: 525 GL------LGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
L L L R V+ SGGEK R + + S L +LDE + LDI
Sbjct: 126 FLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDID 185
Query: 578 SKEMLEEAISEYKGT---VITVSH 598
+ +++ E I++ + +I ++H
Sbjct: 186 ALKIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 64/212 (30%), Positives = 91/212 (42%), Gaps = 54/212 (25%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK------------LIMGLEK 475
K+L Y + ++ E+ + TA+IGP+G GKST L+ + G
Sbjct: 24 KDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83
Query: 476 PRGGEVLLGEHNVL------------PNYFE----QNQAEAL---------DLDKTVLET 510
RG ++ E NV PN F +N AL LD+ V ET
Sbjct: 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIV-ET 142
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDE 569
+ A W D +K D L + LSGG++ RL + + VKP LL +DE
Sbjct: 143 SLKQAALW--DQVK----------DDLHKSALTLSGGQQQRLCIARAIAVKPDILL-MDE 189
Query: 570 PTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
P + LD S LEE + E K T+I V+H+
Sbjct: 190 PASALDPISTMQLEETMFELKKNYTIIIVTHN 221
|
Length = 267 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 52/203 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ L+++ SY + + D+T V GE V ++G +GAGK+T L +IAG E P SG ++
Sbjct: 2 LALDDVRFSYGHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQK-ALESAVD 208
+ ++ L QE + TV + + KL Q+ +E+A
Sbjct: 60 GVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL----KLNAEQREKVEAA-- 113
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
A V L A RL S G + R+
Sbjct: 114 ------------------AAQVGL-----------------AGFLKRLPGELSGGQRQRV 138
Query: 269 SLGKILLQDPDLLLLDEPTNHLD 291
+L + L+++ +LLLDEP + LD
Sbjct: 139 ALARCLVREQPILLLDEPFSALD 161
|
Length = 231 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 4e-09
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 42/214 (19%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI--AFLSQEFEVSMSRT 177
+ G+ VG++G NG GK+T L+I+AG+ +P+ G S ++ F E + +
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDM----DLMGRLLDEFDLLQRKAQAVNLD 233
E + K + ++ + K ++ V ++ D G+ + + L L+
Sbjct: 157 YEGELRAVHKPQY-----VDLIPKVVKGKVGELLKKVDERGKFDEVVERL-------GLE 204
Query: 234 -TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD- 291
LD VS+L S G R+++ LL+D D+ DEP+++LD
Sbjct: 205 NVLDRDVSEL------------------SGGELQRVAIAAALLRDADVYFFDEPSSYLDI 246
Query: 292 ---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L+ + + ++++ HD A LD L
Sbjct: 247 RQRLNAARVIRELA-EDGKYVIVVEHDLAVLDYL 279
|
Length = 591 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 4e-09
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 33/218 (15%)
Query: 425 VTIKNLEFGYEDRLLF-----NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + N+ + Y + F N +LT ++ + T +IG G GKST+++L GL G
Sbjct: 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG 66
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDKTV------------LETVAE----------AAED 517
+ ++G++ + N + E L K + ET+ + +
Sbjct: 67 QTIVGDYAIPANL--KKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
+ LL D + R LSGG+K R+A + LVLDEPT LD
Sbjct: 125 EAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184
Query: 578 SKE----MLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
+E + E EYK +I V+H+ V +I + V+
Sbjct: 185 GEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVI 222
|
Length = 289 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 23/198 (11%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE----HNVLPNYFEQNQA- 498
N E+G+ AI+G G GKSTL++ I L KP G V + + H Y +
Sbjct: 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKR 86
Query: 499 --------EALDLDKTVLETVAEAAEDWR--IDDIKG----LLGRCNFKADMLDRKVSLL 544
E+ + TV + ++++ +D++K LL F D++ + +
Sbjct: 87 IGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQM 146
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDR 600
SGG+ ++A + ++VLDEPT LD SK +L+ ++ T+I VSHD
Sbjct: 147 SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206
Query: 601 YFVKQIVNRVVEVKGSNL 618
V + + V+ +K ++
Sbjct: 207 NEVARYADEVIVMKEGSI 224
|
Length = 286 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 4e-09
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 36/201 (17%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
G V+ ++ L + + GE I G G G++ L + + GL P GE
Sbjct: 1 GEPVLEVRGLSVK----GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE 56
Query: 481 VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
+ L V + +A+ +A ED R + GL+ LD
Sbjct: 57 ITLDGKPVTRR----SPRDAIRAG------IAYVPED-RKRE--GLV---------LDLS 94
Query: 541 V-------SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--- 590
V SLLSGG + ++ +++ + +L+LDEPT +D+ +K + I E
Sbjct: 95 VAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAG 154
Query: 591 GTVITVSHDRYFVKQIVNRVV 611
V+ +S + + + +R++
Sbjct: 155 KAVLLISSELDELLGLCDRIL 175
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-09
Identities = 46/229 (20%), Positives = 80/229 (34%), Gaps = 46/229 (20%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ + L Y + + GE I+G +G GKSTLL + G P G
Sbjct: 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62
Query: 484 -----GEHNVLP--------------NYFEQNQAEALDLDKTVLETVAE----------- 513
E + + QN + L + + + E
Sbjct: 63 IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG 122
Query: 514 ----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
A+DW L +D SGG + RL + +V L+ +DE
Sbjct: 123 NIRATAQDW--------LEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174
Query: 570 PTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
PT LD+ + ++L + + VI V+HD + + R++ ++
Sbjct: 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ 223
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 35/208 (16%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
+ A+L IE GE ++G +G GKSTLL+ + GL G VL+ + + + + A
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 501 LDLD----------------KTVLETVA---------EAAEDWRIDDIKGLLGRCNFKAD 535
L +TV E VA +A R+D+ L+G A
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGL----AQ 156
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD--IPSK---EMLEEAISEYK 590
DRK LSGG + R+ + + +L++DEP + LD I ++ E+LE S+ K
Sbjct: 157 WADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQ-SKLK 215
Query: 591 GTVITVSHDRYFVKQIVNRVVEVKGSNL 618
T++ VSHD +I NR+ ++G +
Sbjct: 216 KTIVFVSHDLDEALKIGNRIAIMEGGRI 243
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 5e-09
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 425 VTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+++++ F ++ NL + +GE AI+GP G GKS+LL ++G + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 480 EVLLG 484
V +
Sbjct: 61 SVSVP 65
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 6e-09
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 23/199 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL----------IMGL 473
+ NL Y + N+ IE+ + TA+IG +GCGKST L+ I GL
Sbjct: 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61
Query: 474 EKPRGGEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVA-EAAEDWRIDD 522
+ G +V + L PN F ++ E + + + + E+ + D
Sbjct: 62 VEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVD 121
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+G D L + LSGG++ RL + + LL+LDEPT+ LD S ++
Sbjct: 122 CLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI 181
Query: 583 EEAISE--YKGTVITVSHD 599
EE + E + ++I V+H+
Sbjct: 182 EELLKELSHNLSMIMVTHN 200
|
Length = 246 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 7e-09
Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 42/226 (18%)
Query: 100 LENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
LE Y +L +++ V+ GE + + G +G GK+T L+I+A P SG ++
Sbjct: 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL-- 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
FE V A+++++ AL ++ D++ +
Sbjct: 62 ------------FE---GEDVSTLKPEAYRQQVSYC----AQTPALFGDTVEDNLIFPWQ 102
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ + R A L S L + + S G + R++L + L
Sbjct: 103 IRN--RRPDRAAALDLLARFALPDSIL-----------TKNITELSGGEKQRIALIRNLQ 149
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEG----YLGKQDVPMVIISHDRA 317
P +LLLDE T+ LD +E Y+ +Q+V ++ I+HD+
Sbjct: 150 FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195
|
Length = 223 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 7e-09
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 56/216 (25%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKP 476
V+ +NL Y L L I + + TA IGP+GCGKST+L+ LI G
Sbjct: 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVE 69
Query: 477 RGGEVLLGEHNVL-------------------PNYFEQNQAEAL-----------DLDKT 506
G+V N+ PN F ++ + + D+D+
Sbjct: 70 --GKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDEL 127
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLL 565
V ++ +AA W D++K D L + LSGG++ RL + + V+P +L
Sbjct: 128 VERSLRQAAL-W--DEVK----------DKLKQSGLSLSGGQQQRLCIARAIAVQPEVIL 174
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+DEP + LD S +EE + E K T+I V+H+
Sbjct: 175 -MDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
|
Length = 264 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 7e-09
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 31/196 (15%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489
+ T+ G+ AIIG NG GKSTL K++ G+ +P GE+L+ +H +
Sbjct: 31 PVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIR 90
Query: 490 -----PNYF---EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541
PN + LD L + + R I L D +
Sbjct: 91 MIFQDPNTSLNPRLRIGQILDFP---LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP 147
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE-----MLEEAISEYKG-TVIT 595
+L+ G+K R+A + ++ +++ DE LD+ + MLE + E +G + I
Sbjct: 148 HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE--LQEKQGISYIY 205
Query: 596 VSHDRYFVKQIVNRVV 611
V+ +K I ++V+
Sbjct: 206 VTQHIGMIKHISDQVL 221
|
Length = 267 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 7e-09
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 39/200 (19%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE-----------------VLLGEH 486
+L I GE AI+G +G GKSTL+ ++ L+KP G L EH
Sbjct: 28 SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREH 87
Query: 487 --------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
++L + E V A R+ + LL R D ++
Sbjct: 88 FGFIFQRYHLLSHLTAAQNVE-------VPAVYAGLERKQRLLRAQELLQRLGL-EDRVE 139
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVI 594
+ S LSGG++ R++ + ++ +++ DEPT LD S E +L + + + TVI
Sbjct: 140 YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQ-LRDRGHTVI 198
Query: 595 TVSHDRYFVKQIVNRVVEVK 614
V+HD Q RV+E++
Sbjct: 199 IVTHDPQVAAQ-AERVIEIR 217
|
Length = 648 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 8e-09
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 59/230 (25%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ ++ Y G L+D+ ++ GE + ++G +G GKTT L +IAG G++
Sbjct: 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD-- 61
Query: 160 NMKIAFLSQEFEVSMS-------RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
+ E V R V++ AF ++ K++R++ A +
Sbjct: 62 GKPVEGPGAERGVVFQNEGLLPWRNVQDNV--AFGLQLAGVEKMQRLEIAHQ-------- 111
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+L++ V L+ G R + S G + R+ + +
Sbjct: 112 ---------MLKK----VGLE-------------GA----EKRYIWQLSGGQRQRVGIAR 141
Query: 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-------GKQDVPMVIISHD 315
L +P LLLLDEP LD T E ++ L GKQ +++I+HD
Sbjct: 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQ---VLLITHD 188
|
Length = 255 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 8e-09
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 35/202 (17%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
V+ +++S SY ++DV++E K G+ V +VG GAGK+T + ++ +P SG I
Sbjct: 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG-RIL 393
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM----EIAGKLERVQKALESAVDDMDL 212
I +++ ++R F++ I + RV + A D
Sbjct: 394 I-DGTDIRTVTRA-------SLRRNIAVVFQDAGLFNRSIEDNI-RVGR--PDATD---- 438
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+E +AQA D ++ K G+ G+R S G + R+++ +
Sbjct: 439 -----EEMRAAAERAQA--HDFIERK------PDGYDTVVGER-GRQLSGGERQRLAIAR 484
Query: 273 ILLQDPDLLLLDEPTNHLDLDT 294
LL+DP +L+LDE T+ LD++T
Sbjct: 485 ALLKDPPILILDEATSALDVET 506
|
Length = 588 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 8e-09
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 41/208 (19%)
Query: 420 SGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SGR + I N+ F Y +D L+ NL++ A++G G GKSTL L+MG
Sbjct: 338 SGR--IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395
Query: 479 GEVLLG-------EHNVLPNYFEQNQAEALDLDKTVLETVA---EAAED--WRI------ 520
GE+ L H+VL Q + + L T L V + +E+ W+
Sbjct: 396 GEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQL 455
Query: 521 --------DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
D + LG + + LS G+K LA + +V+ +L+LDE T
Sbjct: 456 AELARSLPDGLYTPLG----------EQGNNLSVGQKQLLALARVLVQTPQILILDEATA 505
Query: 573 HLDIPSKEMLEEAISEY--KGTVITVSH 598
++D +++ +++A++ T++ ++H
Sbjct: 506 NIDSGTEQAIQQALAAVREHTTLVVIAH 533
|
Length = 592 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 9e-09
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 29/194 (14%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
GVT +KDV++EV+ GE VG+ GV G G++ + I+G +P SG ++
Sbjct: 270 GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL-----------N 318
Query: 169 EFEVSMSRTVREEFMS--AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+V + RE A+ E +R L V D+ L L+ +K
Sbjct: 319 GKDVLGRLSPRERRRLGLAYVPE-------DRHGHGL---VLDLSLAENLV--LGRHDKK 366
Query: 227 AQA----VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282
+ ++ + +L+ E A D S S G Q ++ L + L + PDLL+
Sbjct: 367 PFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLI 426
Query: 283 LDEPTNHLDLDTIE 296
+PT LD+ IE
Sbjct: 427 AAQPTRGLDVGAIE 440
|
Length = 501 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 9e-09
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 58/209 (27%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---- 155
L N+S G T+L ++ G+ GL+G NG+GK+T L+++ + P G ++
Sbjct: 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73
Query: 156 -----KAKS-NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-----GKLERVQKALE 204
+K+ K+A+L Q+ + TVR E + I G L R A
Sbjct: 74 PLESWSSKAFARKVAYLPQQLPAAEGMTVR--------ELVAIGRYPWHGALGRFGAADR 125
Query: 205 SAVDD-MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
V++ + L+G L+ A RLV S S G
Sbjct: 126 EKVEEAISLVG--------LKPLAH--------------------------RLVDSLSGG 151
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDL 292
+ R + ++ QD LLLDEPT+ LD+
Sbjct: 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
|
Length = 265 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 9e-09
Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 51/173 (29%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
++ GE I+GPNG GK+T +K++ G P G D
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG-------------------------DND 56
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566
+ + + ID LSGGE R+A +++ +T +
Sbjct: 57 EWDGITPVYKPQYID----------------------LSGGELQRVAIAAALLRNATFYL 94
Query: 567 LDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
DEP+ +LDI + AI E K T + V HD + + +R+ +G
Sbjct: 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEG 147
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 1e-08
Identities = 41/204 (20%), Positives = 83/204 (40%), Gaps = 52/204 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ N+S ++DV++ V+ GE +G+ G+ GAG+T R + G SG +
Sbjct: 264 LEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLD 319
Query: 155 ---IKAKSNMK-----IAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
++ +S IA++ ++ + + ++ E ++
Sbjct: 320 GKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIA-ENITL------------------ 360
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
A L+D RK +A+ + + L ++ + + S G
Sbjct: 361 --ASLRRFSRRGLIDR-----RKERAL--------AERYIRRLRIKTPSPEQPIGTLSGG 405
Query: 264 WQMRMSLGKILLQDPDLLLLDEPT 287
Q ++ L + L DP +L+LDEPT
Sbjct: 406 NQQKVVLARWLATDPKVLILDEPT 429
|
Length = 500 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 42/217 (19%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG--------------- 484
N +L + G+ +IG +G GKSTL++ + LE+P G V++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 485 --------EH-NVLPN--YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK 533
+H N+L + F N A L+LD T + + ++ ++ L+G
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFG-NVALPLELDNTPKDEIKR-----KVTELLALVGL---- 130
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEY 589
D D S LSGG+K R+A + + +L+ DE T+ LD + E+L+E
Sbjct: 131 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL 190
Query: 590 KGTVITVSHDRYFVKQIVNRVVEVKGSNL--QDYAGD 624
T++ ++H+ VK+I + V + L Q +
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 84/393 (21%), Positives = 158/393 (40%), Gaps = 95/393 (24%)
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIIS 313
S G + R+ + LL P+LL+ DEPT LD L + L+ L + ++ I+
Sbjct: 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN---MGLLFIT 214
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
H+ + + +L ++ + G R E N + + Y T+ L+
Sbjct: 215 HNLSIVRKLADRVAVMQNG--RCVEQNRAATLFSAPT---HPY------------TQKLL 257
Query: 374 NRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV----TIKN 429
N +E + + E +Q+++ FP R + V +KN
Sbjct: 258 N-------------SEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKN 304
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKST----LLKLIMGLEKPRGGEV---- 481
+ F T+ GE ++G +G GKST LL+LI GE+
Sbjct: 305 ISF-------------TLRPGETLGLVGESGSGKSTTGLALLRLI-----NSQGEIWFDG 346
Query: 482 ----LLGEHNVLP-----NYFEQNQAEALDLDKTVLETVAE----------AAEDWRIDD 522
L +LP Q+ +L+ VL+ + E AA+ R
Sbjct: 347 QPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQ--REQQ 404
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK--- 579
+ ++ + R + SGG++ R+A + ++ +L++LDEPT+ LD +
Sbjct: 405 VIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
Query: 580 -EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
+L+ +++ + +SHD + V+ + ++V+
Sbjct: 465 LALLKSLQQKHQLAYLFISHDLHVVRALCHQVI 497
|
Length = 529 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 45/220 (20%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
A+ T+ G A++G NG GKSTL K +MG + G++ + QA
Sbjct: 26 ASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT-------RQA---- 74
Query: 503 LDKTVLETVAEAAE-DWR----IDDI--------KGLLGRCN-----------FKADMLD 538
L K ++ V ++ E DW ++D+ G L R + DM++
Sbjct: 75 LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE 134
Query: 539 ---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKG 591
R++ LSGG+K R+ + + + +++LDEP +D+ ++ +L E E K
Sbjct: 135 FRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK- 193
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631
T++ +H+ V + + V VKG+ L +G FT+
Sbjct: 194 TMLVSTHNLGSVTEFCDYTVMVKGTVLA--SGPTETTFTA 231
|
Length = 272 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 1e-08
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 56/224 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----G 479
+ + NL F Y+ + + ++ I + + TAIIGP+GCGKST LK + + + G
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEG 67
Query: 480 EVLLGEHNVL-------------------PNYFEQNQAE-------------ALDLDKTV 507
V N+ PN F + + L++D V
Sbjct: 68 RVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIV 127
Query: 508 LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E+ + A+ W D+IK + + LSGG++ RL + + VKP LL
Sbjct: 128 -ESALKDADLW--DEIKHKIHKSALD----------LSGGQQQRLCIARALAVKPKVLL- 173
Query: 567 LDEPTNHLDIPSKEMLEEAISEYK----GTVITVSHDRYFVKQI 606
+DEP LD + +E I + T++ VSH+ + V ++
Sbjct: 174 MDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRL 217
|
Length = 261 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 52/210 (24%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK----LIMGLEKPR-GGEVLL 483
NL Y + +L I + A++GP+GCGKSTLL+ L+ E+ R GEV L
Sbjct: 9 NLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL 68
Query: 484 GEHNV-------------------LPNYFE-----QNQAEALDLDKTV---------LET 510
N+ PN F N A + L+ V +E
Sbjct: 69 FGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW 128
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ A W D++K D L+ S LSGG++ RL + + +L++DEP
Sbjct: 129 ALKKAALW--DEVK----------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 571 TNHLDIPSKEMLEEAISEYKG--TVITVSH 598
T ++D +EE + E K T++ V+H
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y ++ ++ I + TA+IGP+GCGKST ++ + + + G
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72
Query: 485 EHNVLPNYFEQNQAEALDLDKTV-----------LETVAEAAEDWRI-----DDIKGLLG 528
+ ++ + + ++L K V + A RI D+ G++
Sbjct: 73 KVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVE 132
Query: 529 RC-------NFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKE 580
+ +D L LSGG++ RL + + VKP +L DEPT+ LD S
Sbjct: 133 NALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIIL-FDEPTSALDPISTA 191
Query: 581 MLEEAISEYKG--TVITVSHD 599
+E+ I K T++ V+H+
Sbjct: 192 RIEDLIMNLKKDYTIVIVTHN 212
|
Length = 258 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 52/217 (23%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPR-- 477
++++ K++ Y + + +L E E TA+IGP+GCGKST L+ + M +
Sbjct: 2 ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 478 -GGEVLLGEHNV-----------------------LPNYFEQNQAEALDL---------D 504
GE+ N+ P N A L + D
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
+ V E++ +AA W+ D LDR SGG++ R+ + + +
Sbjct: 122 QRVEESLKQAA-IWK------------ETKDNLDRNAQAFSGGQQQRICIARALAVRPKV 168
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++LDEPT+ LD S +EE + E K T I V+H+
Sbjct: 169 VLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205
|
Length = 251 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 43/238 (18%)
Query: 97 GVKLENISK-----------SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145
G KL++I K + K V + KD+ + + +G+ VG +G GK+T L++I
Sbjct: 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER 433
Query: 146 QEEPDSGNVIKAKSN-----------MKIAFLSQE---FEVSMSRTVREEFMS-----AF 186
+P G++I S+ KI +SQ+ F S+ ++ S A
Sbjct: 434 LYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEAL 493
Query: 187 KEEMEIAG-----KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD-AKVS 240
G + D++ M D +L++ + + + VS
Sbjct: 494 SNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVS 553
Query: 241 KLMPELGFTA---DDGDRLVAS----FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
K + F + D + LV S S G + R+S+ + ++++P +L+LDE T+ LD
Sbjct: 554 KKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
Length = 1466 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 58/251 (23%), Positives = 114/251 (45%), Gaps = 53/251 (21%)
Query: 79 NKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKT 137
+ ++ NK+ T ++++ + + ++S SY G +L D++ +K K +VG++G+GK+
Sbjct: 455 DSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKS 514
Query: 138 TQLRIIAGQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFK 187
T +++ G + SG ++ ++K I +L QE S ++ E + K
Sbjct: 515 TLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQE-PYIFSGSILENLLLGAK 573
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
E + + + A E A D+ + MP LG
Sbjct: 574 ENVSQ----DEIWAACEIAEIKDDI----------------------------ENMP-LG 600
Query: 248 FTAD---DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT-IEWLEGYLG 303
+ + +G +S S G + R++L + LL D +L+LDE T++LD T + + L
Sbjct: 601 YQTELSEEG----SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656
Query: 304 KQDVPMVIISH 314
QD ++ ++H
Sbjct: 657 LQDKTIIFVAH 667
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 45/236 (19%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
+ + ++ +++G+ +GLVG +G+GK+T + +I F Q+
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQG----------EIRFDGQD 349
Query: 170 FEVSMSRTVREEFMSAFKEEMEIA-----GKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
+ + M + M++ G L + + + + L + Q
Sbjct: 350 I-----DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQ 404
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
R +A + E+G +R FS G + R+++ + L+ P+L+LLD
Sbjct: 405 RVIEA-------------LEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLD 451
Query: 285 EPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD----RAFLDQLCT----KIVE 328
EPT+ LD ++ L K + + ISHD RA ++ KIVE
Sbjct: 452 EPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE 507
|
Length = 534 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 55/210 (26%)
Query: 98 VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ E ++ +Y L + V+ GE V LVG +GAGK+T +++ +P SG +
Sbjct: 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397
Query: 155 IKAKSNMK----------IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQK 201
+ +++ +A + Q+ F S+ +R A EE+E A
Sbjct: 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAA------- 450
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
R A A +S L PE G+ G+R V + S
Sbjct: 451 -----------------------RAAHA------HEFISAL-PE-GYDTYLGERGV-TLS 478
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R+++ + +L+D +LLLDE T+ LD
Sbjct: 479 GGQRQRIAIARAILKDAPILLLDEATSALD 508
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 2e-08
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 40/187 (21%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
+ GE V + G NGAGKT+ LRI+AG PD+G ++ + + R
Sbjct: 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG---------EVLWQGEPI-----RRQ 68
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---MGRLLDEFDLLQRKAQAVNLDTL 235
R+E+ ++ G + K +A++++ + D+ L + AQ V L
Sbjct: 69 RDEYHQ----DLLYLGHQPGI-KTELTALENLRFYQRLHGPGDDEALWEALAQ-VGL--- 119
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
GF D V S+G Q R++L ++ L L +LDEP +D +
Sbjct: 120 ----------AGFE----DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGV 165
Query: 296 EWLEGYL 302
LE L
Sbjct: 166 ARLEALL 172
|
Length = 204 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
NL IE+GE AI G G GK++LL LI+G +P G++ +H+ ++P
Sbjct: 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI---KHSGRISFSSQFSWIMPGT 113
Query: 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
++N + D+ ++V +A + +DI + N +L LSGG++AR+
Sbjct: 114 IKENIIFGVSYDEYRYKSVVKACQ--LEEDITKFPEKDN---TVLGEGGITLSGGQRARI 168
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAI 586
+ + + K + L +LD P +LD+ + KE+ E +
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 64/232 (27%)
Query: 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------- 154
K G + D + KGE ++G++G+GK+T +R++ EP +G +
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 155 ----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
++ KI + Q+F + T+ + ++ E+ + ER +KALE
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQN--TSLGPELLGWPEQERKEKALELL---- 114
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
+L+ + E R S G Q R+ L
Sbjct: 115 ----KLVG------------------------LEEY------EHRYPDELSGGMQQRVGL 140
Query: 271 GKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
+ L +PD+LL+DE + LD D ++ L+ L K +V I+HD
Sbjct: 141 ARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT---IVFITHD 189
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 31/181 (17%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEHNVLPNYFEQNQAE---- 499
L ++RGE A+IG +G GKSTLL ++ GL+ GEV L+G+ L E+ +A+
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQP--LHQMDEEARAKLRAK 88
Query: 500 -------ALDLDKTV--LETV-------AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
+ L T+ LE V E++ R + K LL + LD +
Sbjct: 89 HVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR-NGAKALLEQLGL-GKRLDHLPAQ 146
Query: 544 LSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVITVSH 598
LSGGE+ R+A + F +P +L DEPT +LD + + +L E+ T+I V+H
Sbjct: 147 LSGGEQQRVALARAFNGRPD-VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205
Query: 599 D 599
D
Sbjct: 206 D 206
|
Length = 228 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 51/208 (24%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ +N+S Y V +LK ++ + G+ V LVG +G GK+T + ++ +P SG +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 155 IKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-GKLERVQKAL 203
+ +++ I +SQE V T+ E I GK + + +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQE-PVLFDGTIAE----------NIRYGKPDATDEEV 109
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
E A +KA + + L P+ G+ G+R + S G
Sbjct: 110 EEAA-----------------KKANIHDF------IMSL-PD-GYDTLVGER-GSQLSGG 143
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ R+++ + LL++P +LLLDE T+ LD
Sbjct: 144 QKQRIAIARALLRNPKILLLDEATSALD 171
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 51/228 (22%)
Query: 73 SADEFENKKYSNKQSNTGASSISSGVKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGV 131
+A K + + G+ LEN+S ++ G T+L ++ +EV+ GE++ + G
Sbjct: 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGE 427
Query: 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEME 191
+GAGKT+ LR +AG SG + ++ + FL Q + T+RE
Sbjct: 428 SGAGKTSLLRALAGLWPWGSGRIS-MPADSALLFLPQRPYLP-QGTLRE----------- 474
Query: 192 IAGKLERVQKAL-----ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246
AL D +L+ L V L L L
Sbjct: 475 ----------ALCYPNAAPDFSDAELVAVL-----------HKVGLG-------DLAERL 506
Query: 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
L S G Q R++ ++LL P + LDE T+ LD +T
Sbjct: 507 DEEDRWDRVL----SGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550
|
Length = 604 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-08
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 40/225 (17%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+S G +L +V + + KGE V L+G +G GK+T L + G
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG-------------- 50
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
L+ +F + + E+ + G L Q AL L
Sbjct: 51 -----ALAGQFSCTGELWLNEQRLDMLPAAQRQIGIL--FQDAL------------LFPH 91
Query: 220 FDLLQRKAQAVNLDTL-DAKVSKLMPELGFTADDG--DRLVASFSSGWQMRMSLGKILLQ 276
+ Q A+ +A+ + L + DG + A+ S G + R++L + LL
Sbjct: 92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151
Query: 277 DPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRA 317
P LLLDEP + LD+ +W+ + +P V ++HD
Sbjct: 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196
|
Length = 213 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 54/219 (24%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMG 472
S +++++N+ Y I RG+ TA+IGP+GCGKST+L+ LI G
Sbjct: 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEG 68
Query: 473 LEKPRGGEVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAE 513
G VL ++ PN F K++ E +A
Sbjct: 69 CSLK--GRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP----------KSIYENIAF 116
Query: 514 AAEDWRIDDIKG----LLGRCNFKA-------DMLDRKVSLLSGGEKARLAFCKFMVKPS 562
A RI+ G L+ R KA D L+ LSGG++ RL + +
Sbjct: 117 GA---RINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEP 173
Query: 563 TLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++++DEP + LD S +EE + E K T++ V+H+
Sbjct: 174 EVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN 212
|
Length = 269 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 27/216 (12%)
Query: 428 KNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
+N+ F Y+D NLTI+RGE +IG NG GKSTL L+ GL +P+ GE+LL
Sbjct: 326 RNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385
Query: 487 NVLPNYFEQNQAEALDLDKTV----------LETVAEAAEDWRIDDIKGLLGRCNFKADM 536
V + L V L + A ++ L + K ++
Sbjct: 386 PVTAE----QPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAH-KLEL 440
Query: 537 LDRKVSL--LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-----IPSKEMLEEAISEY 589
D ++S LS G+K RLA + + +L+LDE D + +L + E
Sbjct: 441 EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPL-LQEM 499
Query: 590 KGTVITVSH-DRYFVKQIVNRVVEVKGSNLQDYAGD 624
T+ +SH D YF+ +R++E++ L + G+
Sbjct: 500 GKTIFAISHDDHYFIH--ADRLLEMRNGQLSELTGE 533
|
Length = 547 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 35/183 (19%)
Query: 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVL-------- 482
L + + G I GPNGCGKS+L +++ L KP G++
Sbjct: 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYM 526
Query: 483 ----LGEHNVLPNYFEQNQAEAL---DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
L + + P+ E + L DL++ +L+ V ++ I G + D
Sbjct: 527 TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQ-ILDNV-------QLTHILEREGGWSAVQD 578
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVIT 595
+D +LSGGEK R+A + +LDE T+ + + + + E+ T+ +
Sbjct: 579 WMD----VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFS 634
Query: 596 VSH 598
VSH
Sbjct: 635 VSH 637
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 96 SGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+G+KL+ + KSY G T V+K + +V GE + LVG +G GK+T LR++AG E SG
Sbjct: 2 AGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59
|
Length = 356 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 39/206 (18%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+ L N +K++ T L ++ E+ +G+ V ++G NGAGK+T L IAG +P SG
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 153 NV------IKAKSNMKIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + KS K A L++ F+ ++ T E ++ E + +A + ++ L S
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE--LTIE-ENLALA-ESRGKKRGLSS 117
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A L R F + + L ++ L S G +
Sbjct: 118 A-----LNERRRSSFRERLARLGLGLENRLSDRIGLL------------------SGGQR 154
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD 291
+SL L P +LLLDE T LD
Sbjct: 155 QALSLLMATLHPPKILLLDEHTAALD 180
|
Length = 263 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 4e-08
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 54/202 (26%)
Query: 104 SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI 163
S + LKD+ EV KGE V +VG G+GK++ L + G+ E SG+V S I
Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS---I 68
Query: 164 AFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
A++SQE + + T+RE F F E ER +K +++ + DL
Sbjct: 69 AYVSQEPWI-QNGTIRENILFGKPFDE--------ERYEKVIKACALEPDL--------- 110
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV-----ASFSSGWQMRMSLGKILLQ 276
+++P DGD + S G + R+SL + +
Sbjct: 111 -------------------EILP-------DGDLTEIGEKGINLSGGQKQRISLARAVYS 144
Query: 277 DPDLLLLDEPTNHLDLDTIEWL 298
D D+ LLD+P + +D +
Sbjct: 145 DADIYLLDDPLSAVDAHVGRHI 166
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-08
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 100 LENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+EN+S Y G VL++V++ ++ GE + ++G +G+GK+T R+I G P SG V
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 5e-08
Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 64/227 (28%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------------- 155
G VLK + + ++GE + L+G NGAGK+T L + G P SG V+
Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGL 63
Query: 156 -KAKSNMKIAFLS---QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ + + + F Q F + + V ++ E E+ RV++AL AV
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVE---RRVREALT-AVGASG 119
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L R ++K R+++
Sbjct: 120 LRERPTHCLSGGEKK----------------------------------------RVAIA 139
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315
+ PD+LLLDEPT LD E + L + + + +VI +HD
Sbjct: 140 GAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 5e-08
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 50/228 (21%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK--------- 162
+LK +++ ++ GE +G++G +G+GK+T R++ G P SG+V ++++
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 163 -IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
I +L Q+ E+ T+ E ++ F EE + +K +E+A RL +
Sbjct: 411 HIGYLPQDVEL-FDGTIAEN-IARFGEEAD-------PEKVIEAA--------RLAGVHE 453
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ R Q DT + G A+ S G + R++L + L DP L+
Sbjct: 454 LILRLPQG--YDTR-------------IGEGG----ATLSGGQRQRIALARALYGDPFLV 494
Query: 282 LLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326
+LDEP ++LD + L + + +V+I+H R KI
Sbjct: 495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH-RPSALASVDKI 541
|
Length = 580 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-08
Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 41/234 (17%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++ ++ L + + +L I GE A++GP+G GKSTLL+ + GL G+
Sbjct: 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDK 58
Query: 482 LLGEH-NVLPNYFEQNQAEALDLDK------------------TVLETVAEAAED----W 518
G H +L ++ A D+ K +VLE V A W
Sbjct: 59 SAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW 118
Query: 519 R--------IDDIKGL--LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
R + L L R ++VS LSGG++ R+A + +++ + +++ D
Sbjct: 119 RTCFSWFTREQKQRALQALTRVGM-VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD 177
Query: 569 EPTNHLDIPSKEMLEEA---ISEYKG-TVITVSHDRYFVKQIVNRVVEVKGSNL 618
EP LD S ++ + I++ G TV+ H + + R+V ++ ++
Sbjct: 178 EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
Length = 262 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVLPNYF 493
R + NL I+ G+ A++G +G GK+TLL++I+G +K RG E G+ V N
Sbjct: 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV 455
Query: 494 EQNQAEALDL---DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR-KVSLLSGGEK 549
+ + T+LE + D ++ +L R +L R K S LS G+K
Sbjct: 456 SALIPGEYEPEFGEVTILEHLRSKTGD--LNAAVEILNRAGLSDAVLYRRKFSELSTGQK 513
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLD------IPSKEMLEEAISEYKGTVITVSHDRYFV 603
R K + + +L++DE HLD + K + E E T+I V+H
Sbjct: 514 ERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK--ISELAREAGITLIVVTHRPEVG 571
Query: 604 KQI 606
+
Sbjct: 572 NAL 574
|
Length = 593 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 6e-08
Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 65/225 (28%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179
K+G+ G++G NG GKTT ++I++G+ P+ G+ + E S ++
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEE--------------EPSWDEVLK 141
Query: 180 E----EFMSAFKE----EMEIAGKLERVQ---KALESAVDDMDLMGRLL---DEFDLLQR 225
E + FK+ E+++ K + V K + V LL DE L
Sbjct: 142 RFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKV------RELLKKVDERGKLDE 195
Query: 226 KAQAVNLDT-LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ + L+ LD +S+L S G R+++ LL+D D D
Sbjct: 196 VVERLGLENILDRDISEL------------------SGGELQRVAIAAALLRDADFYFFD 237
Query: 285 EPTNHLDL-------DTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
EPT++LD+ I L + ++++ HD A LD L
Sbjct: 238 EPTSYLDIRQRLNVARLIREL-----AEGKYVLVVEHDLAVLDYL 277
|
Length = 590 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 59/241 (24%), Positives = 96/241 (39%), Gaps = 63/241 (26%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------IKAKSNMK--- 162
VL D+ E+ GE V L G +G+GKTT L +I G G++ + S +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 163 ----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
I ++ Q + T R+ VQ ALE L
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQN-----------------VQMALE-----------LQP 111
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLGKILL 275
+ + +A ++ +G GD L + S G + R+++ + L+
Sbjct: 112 NLSYQEARERA----------RAMLEAVGL----GDHLDYYPHNLSGGQKQRVAIARALV 157
Query: 276 QDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331
P L+L DEPT LD D +E ++ +Q ++I++HD LD + +IV E
Sbjct: 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHMED 216
Query: 332 G 332
G
Sbjct: 217 G 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 50/229 (21%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-------- 162
L+ +++ ++ GE + ++G +G+GK+T R+I G P SG+V +++K
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391
Query: 163 --IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
I +L Q+ E+ TV E ++ F E + +K +E+A +L
Sbjct: 392 KHIGYLPQDVEL-FPGTVAEN-IARFGENAD-------PEKIIEAA--------KLAGVH 434
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+L+ R G+ G A+ S G + R++L + L DP L
Sbjct: 435 ELILRLPD------------------GYDTVIGPG-GATLSGGQRQRIALARALYGDPKL 475
Query: 281 LLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFLDQLCTKI 326
++LDEP ++LD + + L L + + +V+I+H R L KI
Sbjct: 476 VVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH-RPSLLGCVDKI 523
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 75/240 (31%)
Query: 102 NISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------ 154
++ SY G LK + ++ +KGE V L+G NGAGK+T G +P SG V
Sbjct: 6 DLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP 65
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAF--------KEEMEIAGKLER 198
++ + + I F + + ++ + TV E+ AF KEE+E +R
Sbjct: 66 IKYDKKSLLEVRKTVGIVFQNPDDQL-FAPTVEEDV--AFGPLNLGLSKEEVE-----KR 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
V++AL +AV ++ + K
Sbjct: 118 VKEAL------------------------KAVGMEGFENKPPH----------------- 136
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
S G + R+++ IL P++++LDEPT+ LD I L L K+ + ++I +HD
Sbjct: 137 HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD 196
|
Length = 275 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 51/231 (22%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ +++S SY V VLK +T+ + GE V LVG +G+GK+T ++ +P G V
Sbjct: 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538
Query: 155 ---------IKAKS-NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ ++A + QE V S +VRE IA L
Sbjct: 539 LLDGVPLVQYDHHYLHRQVALVGQE-PVLFSGSVRE----------NIAYGLTDTPDEEI 587
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
A A+A N + P G+ + G++ S SG
Sbjct: 588 MAA-------------------AKAANAHDFIME----FPN-GYDTEVGEK--GSQLSGG 621
Query: 265 Q-MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314
Q R+++ + L++ P +L+LDE T+ LD + + L+ + +++I+H
Sbjct: 622 QKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAH 672
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 9e-08
Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 54/217 (24%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLE 474
SV ++ ++ Y L +L I + A IGP+GCGKSTLL+ LI G +
Sbjct: 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK 77
Query: 475 KPRGGEVLLGEHNVL-------------------PNYFEQNQAEAL-----------DLD 504
G +L + N+ PN F ++ E + +LD
Sbjct: 78 VE--GRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLD 135
Query: 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
+ V +++ AA W +++K D L K + LSGG++ RL + + +
Sbjct: 136 ELVEDSLRRAA-IW--EEVK----------DKLKEKGTALSGGQQQRLCIARAIAMKPDV 182
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
L++DEP + LD S +EE E K T+I V+H+
Sbjct: 183 LLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHN 219
|
Length = 274 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 9e-08
Identities = 110/565 (19%), Positives = 217/565 (38%), Gaps = 123/565 (21%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRII-AGQEEPDSGNVIKAKSNMKIA 164
+ ++++++ +++GE + +VG +G+GK+ +R++ ++ + + ++
Sbjct: 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88
Query: 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
LS++ M + F+E M L V E + + L E +++
Sbjct: 89 ELSEQSAAQMRHVRGADMAMIFQEPMT---SLNPVFTVGEQIAESIRLHQGASREEAMVE 145
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
K LD + ++ + R S G + R+ + L P +L+ D
Sbjct: 146 AKRM---LDQVRIPEAQTILS---------RYPHQLSGGMRQRVMIAMALSCRPAVLIAD 193
Query: 285 EPTNHLD-------LDTIEWLEGYLGKQDVPM--VIISHDRAFLDQLCTKIVETEMGVSR 335
EPT LD L I+ L+ +++ M + I+HD MGV
Sbjct: 194 EPTTALDVTIQAQILQLIKVLQ-----KEMSMGVIFITHD---------------MGV-- 231
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQ---------TKDL---INRLGA--GAN 381
V E A + Y + +EQ T+ L + +LGA G +
Sbjct: 232 ---------VAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLD 282
Query: 382 SGRASSAEKKLERLQEEEQIE-------KP-FQRKQMKIRFPERG----RSGRSVVTIKN 429
R ++E IE +P Q + + RFP R R R V ++
Sbjct: 283 YPRRFPLISLEHPAKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEK 342
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV- 488
+ F + GE +++G +G GKST + ++ L + +GGE++ +
Sbjct: 343 VSF-------------DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389
Query: 489 -LP-----------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDD-------IKGLLGR 529
L + Q+ +LD +TV +++ E + + LL R
Sbjct: 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLER 449
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEA 585
+ R SGG++ R+ + + +++ DE + LD+ + +L +
Sbjct: 450 VGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL 509
Query: 586 ISEYKGTVITVSHDRYFVKQIVNRV 610
++ + +SHD V++I +RV
Sbjct: 510 QRDFGIAYLFISHDMAVVERISHRV 534
|
Length = 623 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 55/246 (22%), Positives = 93/246 (37%), Gaps = 65/246 (26%)
Query: 425 VTIKNLEFGYEDRL-----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ +KN+ + +L + ++ I +GE AIIG G GK+T ++ + L P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 480 EVLLGEHNVLPNYF---EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN----- 531
+ + E+N+ + + +K + + V + +I IK + R
Sbjct: 63 TI---------EWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF 113
Query: 532 -----FKA-----------------------------------DMLDRKVSLLSGGEKAR 551
F+ L R LSGG+K R
Sbjct: 114 AEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRR 173
Query: 552 LAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLE--EAISEYKGTVITVSHDRYFVKQIVN 608
+A + LV DEPT LD KE+LE + +++ T+I V+HD V +
Sbjct: 174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK 233
Query: 609 RVVEVK 614
R + K
Sbjct: 234 RTIFFK 239
|
Length = 305 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 57/249 (22%), Positives = 105/249 (42%), Gaps = 85/249 (34%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+++E+IS Y LKDV++ V +GE V +VG NG+GK+T +++ G P++G +
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 155 -------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAF--------KEEMEIA 193
++ + M +F + TV+++ AF +EEM
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQF---VGATVQDDV--AFGLENIGVPREEM--- 117
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
+ERV +AL V ++ D
Sbjct: 118 --VERVDQALRQ------------------------VGME-----------------DFL 134
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQD 306
+R S G + R+++ +L PD+++LDE T+ LD L+T+ L+ ++
Sbjct: 135 NREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLK---EQKG 191
Query: 307 VPMVIISHD 315
+ ++ I+HD
Sbjct: 192 ITVLSITHD 200
|
Length = 279 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ +N+SK + VL ++ + +GE V ++G +G+GK+T LR I EE SG++I
Sbjct: 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
|
Length = 240 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
+ +E+G+ A+ G G GKS+LL +IMG +P G++ +H+ ++P
Sbjct: 446 SFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI---KHSGRISFSPQTSWIMPGT 502
Query: 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
+ N L D+ +V +A + +DI + K + + ++ LSGG++AR+
Sbjct: 503 IKDNIIFGLSYDEYRYTSVIKACQ--LEEDIALFPEKD--KTVLGEGGIT-LSGGQRARI 557
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAI 586
+ + + K + L +LD P HLD+ + KE+ E +
Sbjct: 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 70/216 (32%)
Query: 100 LENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
L++I +SY V VLK ++ ++ GE V +VG +G+GK+T + I+ ++P SG
Sbjct: 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR 66
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-----------EEMEI------AGKLER 198
A + +A L + ++++ RE F F+ + +E+ + +R
Sbjct: 67 VAGQD--VATLDAD---ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR 121
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL-- 256
+ +A E LLQR LG DR+
Sbjct: 122 LLRAQE-----------------LLQR--------------------LGL----EDRVEY 140
Query: 257 -VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ S G Q R+S+ + L+ ++L DEPT LD
Sbjct: 141 QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
|
Length = 648 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316
S G Q R++L + L DPD+LLLDEPT+ LD T + L + +V+++HD
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161
Query: 317 AFLDQLCTKIV 327
+L ++V
Sbjct: 162 DEAARLADRVV 172
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 36/226 (15%)
Query: 95 SSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
S V+L NI+ Y + ++++ + ++ G++V LVG +G+GK+T +++AG +P SG
Sbjct: 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQK---ALESAV-D 208
I F E + R V +A + V + E V D
Sbjct: 535 E---------ILFDGIPRE-EIPREV-------------LANSVAMVDQDIFLFEGTVRD 571
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
++ L + + DL++ A D + ++ EL A+ G A+ S G + R+
Sbjct: 572 NLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAEL---AEGG----ANLSGGQRQRL 624
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314
+ + L+++P +L+LDE T+ LD +T + ++ L ++ +I++H
Sbjct: 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH 670
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 50/202 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+L+ I SY + D+T +GE +VG +G+GK+T L +IAG E P SG V+
Sbjct: 1 VRLDKIRFSYGEQPMHFDLT--FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLIN 58
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ ++ L QE + TV + +++ ++A+E A+
Sbjct: 59 GVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLT---AEDRQAIEVALAR 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ L G RL S G + R++
Sbjct: 116 VGLAGLEK-------------------------------------RLPGELSGGERQRVA 138
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
L ++L++D +LLLDEP LD
Sbjct: 139 LARVLVRDKPVLLLDEPFAALD 160
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 22/58 (37%), Positives = 40/58 (68%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++ N++KS+ G + DV+ + KGE L+G +G GK+T LR++AG E+P +G ++
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77
|
Length = 377 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 104 SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSG-------NV 154
SKS K +LK+V+ + K GE ++G +GAGK+T L +AG+ SG +
Sbjct: 18 SKSGK--QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFM 183
K I ++ Q+ + + TVRE M
Sbjct: 76 DKRSFRKIIGYVPQDDILHPTLTVRETLM 104
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
S ++++ ++ Y+ G +L DV+ +++ GE V +VG +G+GK+T LR++ G E P+SG
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508
Query: 153 NV 154
+V
Sbjct: 509 SV 510
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 65/229 (28%)
Query: 109 GVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK 158
G+ V + D + +V++GE ++G++G+GK+T +R++ EP G + + A
Sbjct: 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAA 98
Query: 159 S-----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
KI+ + Q F + RTV E AF E++ K ER ++ALE+ ++L+
Sbjct: 99 ELRELRRKKISMVFQSFALLPHRTVLEN--VAFGLEVQGVPKAEREERALEA----LELV 152
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
G L+ + D+ S G Q R+ L +
Sbjct: 153 G--LEGYA--------------------------------DKYPNELSGGMQQRVGLARA 178
Query: 274 LLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
L DPD+LL+DE + LD D + L+ L K +V I+HD
Sbjct: 179 LANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT---IVFITHD 224
|
Length = 386 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ K Y GV L VK+GE +G+VG NG GKTT ++I+AGQ P+ N
Sbjct: 1 QLYPDCVKRY-GVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 46/235 (19%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ ++++ L Y + + GE I+G +G GK+TLLK I G P G
Sbjct: 2 MDKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 480 EVLLGEHNVLP-------------------NYFEQNQAEALDLDKTVLETVAE------- 513
V + P + QN + L + + + E
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA 121
Query: 514 --------AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
A+DW L D +D SGG + RL + +V L+
Sbjct: 122 RHYGNIRAEAQDW--------LEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLV 173
Query: 566 VLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGS 616
+DEPT LD+ + ++L + E V+ V+HD + + +R++ +K
Sbjct: 174 FMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQG 228
|
Length = 258 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPM 309
RL S G + R+++G+ LL P LLL+DEP LD + + +LE + +P+
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 310 VIISHD 315
+ +SH
Sbjct: 186 LYVSHS 191
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++K Y +DV++++ GE +G+VG +G+GKTT L ++ + PD+G V
Sbjct: 10 RGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 3e-07
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++N+ + Y D NL I++GE IIG NG GKSTL + GL +P+ G+VL
Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 483 L-----GEHNVLPNYFE------QNQAEALDLDKTVLETVAEAAEDW---------RIDD 522
+ G+ + L + QN E + +TV E +A E+ R+D
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQN-PETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+G ++ R LSGG+ +A + L+ DE T+ LD S +
Sbjct: 120 ALAEIGLEKYR----HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
Query: 583 EEAISEY--KG-TVITVSHD 599
E I + KG T++ ++H+
Sbjct: 176 LERIKKLHEKGKTIVYITHN 195
|
Length = 274 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 3e-07
Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 61/191 (31%)
Query: 453 TAIIGPNGCGKSTLLKLIMGLEK--PRG---GEVLLGEHNVL------------------ 489
TAIIGP+GCGKST+L+ I + P G++LL + ++
Sbjct: 33 TAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQ 92
Query: 490 -PNYFEQ-----------------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
PN F N++EA ++ ++ L+ VA W D++K
Sbjct: 93 KPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVAL----W--DEVK------- 139
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
D L LSGG++ RL + + VKP +L +DEP + LD S +EE I E K
Sbjct: 140 ---DRLKSNAMELSGGQQQRLCIARTIAVKPEVIL-MDEPASALDPISTLKIEELIEELK 195
Query: 591 G--TVITVSHD 599
T+I V+H+
Sbjct: 196 EKYTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 100 LENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ N+S SY VLK+++ E+K+GEK+ L+G +G+GK+T L+++ G +P G +
Sbjct: 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLD 62
Query: 158 KSNM---------KIAFLSQE 169
+ I+ L+Q
Sbjct: 63 GVPVSDLEKALSSLISVLNQR 83
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 4e-07
Identities = 50/255 (19%), Positives = 108/255 (42%), Gaps = 27/255 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR----IIAGQEEPDSGN 153
+++E ++K++ L V + GE V L+G +G+GK+T LR +I G + S
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ ++ + L+++ S + T ++ + +L ++ L A+
Sbjct: 65 ELLGRTVQREGRLARDIRKSRANT------GYIFQQFNLVNRLSVLENVLIGALGSTPFW 118
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
F Q++ + + + +G + V++ S G Q R+++ +
Sbjct: 119 RTCFSWFTREQKQ-----------RALQALTRVGM-VHFAHQRVSTLSGGQQQRVAIARA 166
Query: 274 LLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L+Q ++L DEP LD ++ ++ L + +V+ H + + C +IV
Sbjct: 167 LMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL 226
Query: 330 EMGVSRTYEGNYSQY 344
G Y+G+ Q+
Sbjct: 227 RQG-HVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 48/222 (21%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL----------- 469
G + +++++L+ Y D ++ I TA+IGP+GCGKST L+
Sbjct: 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAA 101
Query: 470 -IMGLEKPRGGEVLLGEHNVL------------PNYFEQNQAEAL--------DLDKTVL 508
I G + G ++ N++ PN F ++ E + D++ +L
Sbjct: 102 RIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLL 161
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKA-------DMLDRKVSLLSGGEKARLAFCKFMVKP 561
+ + D+ L+ R +A D LD LSGG++ RL + +
Sbjct: 162 ARLLGRDDKDAEDE---LVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVD 218
Query: 562 STLLVLDEPTNHLD--IPSK--EMLEEAISEYKGTVITVSHD 599
++++DEP + LD SK +++EE EY TV+ V+H+
Sbjct: 219 PEVILMDEPASALDPIATSKIEDLIEELAEEY--TVVVVTHN 258
|
Length = 305 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 56/206 (27%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--------------G 479
Y DR + + + + GE I+GPNG GKSTLL LI G + P+G G
Sbjct: 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-DHPQGYSNDLTLFGRRRGSG 328
Query: 480 EVL--LGEH-------------------NV-LPNYFEQNQAEALDLDKTVLETVAEAAED 517
E + + +H NV L +F +++ + + V + + A+
Sbjct: 329 ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFF-----DSIGIYQAVSDRQQKLAQQ 383
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDI 576
W L D LS G++ RLA + +VK TLL+LDEP LD
Sbjct: 384 W--------LDILGIDKRTADAPFHSLSWGQQ-RLALIVRALVKHPTLLILDEPLQGLDP 434
Query: 577 PSKEM----LEEAISEYKGTVITVSH 598
++++ ++ ISE + ++ VSH
Sbjct: 435 LNRQLVRRFVDVLISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 4e-07
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 40/170 (23%)
Query: 453 TAIIGPNGCGKSTL---LKLIMGLEKP---RGGE----VLLGEHNVLPNYFEQNQAEA-- 500
TAI+GPNG GKS + ++ ++G + RG + + G P N AE
Sbjct: 25 TAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP----ANFAEVTL 80
Query: 501 -LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV---SLLSGGEKARLA--- 553
D +++ + +I + +KV SLLSGGEKA A
Sbjct: 81 TFDNSDGRYSIISQG----DVSEI----------IEAPGKKVQRLSLLSGGEKALTALAL 126
Query: 554 -FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTV--ITVSHDR 600
F F V+PS VLDE LD + E + E+ I ++H +
Sbjct: 127 LFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRK 176
|
Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 40/223 (17%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
++ + +S S G +LKD++ + + G +VG +GAGK+T +++I +P G++ I
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
I + ++ M F K+ +E G + + +K
Sbjct: 64 GVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEY-GPMLKGEK--------------- 107
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ V + +G + R V + S G R+S+ + L
Sbjct: 108 -------------------NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN 148
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHD 315
+P++LLLDEPT+ LD + E +E + K ++ ++ I+H+
Sbjct: 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191
|
Length = 241 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 5e-07
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 26/169 (15%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQNQAEALD 502
G+ AI+GP G GKSTL+ L+ + P+ G +L+ ++ L +A
Sbjct: 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420
Query: 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV-----------SLLSGGEKAR 551
++++ + + D ++++ R D ++RK LSGGE+ R
Sbjct: 421 FNRSIEDNIRVGRPDATDEEMRAAAERAQ-AHDFIERKPDGYDTVVGERGRQLSGGERQR 479
Query: 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDR 600
LA + ++K +L+LDE T+ LD+ ++ ++ A+ E + R
Sbjct: 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDE-------LMKGR 521
|
Length = 588 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ + +SK Y +DV++++ GE +G+VG +G+GKTT L+ I+G+ PD+G V
Sbjct: 7 LSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
|
Length = 258 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 5e-07
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 48/202 (23%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---- 489
Y + + +++ I + E T IGP+GCGKST+L+ + + G G + L
Sbjct: 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77
Query: 490 --------------------PNYFE----QNQAEALDLDK------TVLETVAEAAEDWR 519
PN F N A L L++ ++ + A W
Sbjct: 78 YGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALW- 136
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
D++K L K L LSGG++ RL + + +L+LDEP + LD +
Sbjct: 137 -DEVKDKL-----KVSGLS-----LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIAT 185
Query: 580 EMLEEAISEYKG--TVITVSHD 599
+EE + E K T+ V+H+
Sbjct: 186 RRVEELMVELKKDYTIALVTHN 207
|
Length = 261 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 27/193 (13%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-LGEH-------------NVL 489
L + GE ++G +GCGKST + I+GL K GEV LG+ + +
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100
Query: 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWR--------IDDIKGLLGRCNFKADMLDRKV 541
F Q+ +L+ T+ E +AE + D +K ++ + ++++R
Sbjct: 101 QMIF-QDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVS 597
SGG+ R+ + ++ L++ DEP + LD+ + +L++ E ++I ++
Sbjct: 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIA 219
Query: 598 HDRYFVKQIVNRV 610
HD VK I +RV
Sbjct: 220 HDLAVVKHISDRV 232
|
Length = 331 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 34/200 (17%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
NLT+ GE A++G NG GKSTL+K++ G+ +P G + + NY + + A L
Sbjct: 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNI----NYNKLDHKLAAQL 80
Query: 504 -------------DKTVLETV-----------AEAAEDWRIDDIKG--LLGRCNFKADML 537
+ TVLE + DWR ++ +L R K D L
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-L 139
Query: 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVI 594
D KV+ LS K L K ++ + ++++DEPT+ L + L +++ + ++
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199
Query: 595 TVSHDRYFVKQIVNRVVEVK 614
+SH +++I +R +K
Sbjct: 200 YISHKLAEIRRICDRYTVMK 219
|
Length = 510 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 53/209 (25%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
V+ N++ Y G L ++ ++ GE V LVG +G+GK+T + +I EPDSG ++
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 156 K----------AKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202
A ++A +SQ+ F +++ + E A + +++A
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIA-------YGRTEQADR-AEIERA 442
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
L +A D + +L D +G ++G L S
Sbjct: 443 LAAA-YAQDFVDKLPLGLDT----------------------PIG---ENGVLL----SG 472
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R+++ + LL+D +L+LDE T+ LD
Sbjct: 473 GQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-07
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
L DV++ VK+GE + ++G NG+GK+T +R+I G E +SG +I
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65
|
Length = 279 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 6e-07
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 39/203 (19%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495
+L G+ +IIG +G GKST L+ I LEKP G +++ + ++
Sbjct: 25 SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADK 84
Query: 496 NQAEALDL-------------DKTVLETVAEA--------AEDWRIDDIKGLLGRCNFKA 534
NQ L TVLE V EA ++ R +K L +
Sbjct: 85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVK-YLAKVGIDE 143
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA------ISE 588
+ LSGG++ R++ + + +L+ DEPT+ LD E++ E ++E
Sbjct: 144 RAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD---PELVGEVLRIMQQLAE 200
Query: 589 YKGTVITVSHDRYFVKQIVNRVV 611
T++ V+H+ F + + + V+
Sbjct: 201 EGKTMVVVTHEMGFARHVSSHVI 223
|
Length = 257 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (122), Expect = 6e-07
Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 98 VKLENISKSYK-----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K E ++ +Y+ L D+ EVKKG L+G G+GK+T L+ + G +P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
V ++ +S T +++ + ++++ + + Q E+ + D+
Sbjct: 62 KV-------------TVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAF 108
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+ F + + KA+ + + L+ +G + ++ S G R+++
Sbjct: 109 GPQ---NFGIPKEKAEKIAAEKLEM--------VGLADEFWEKSPFELSGGQMRRVAIAG 157
Query: 273 ILLQDPDLLLLDEPTNHLD 291
IL +P++L+LDEPT LD
Sbjct: 158 ILAMEPEVLVLDEPTAGLD 176
|
Length = 288 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 6e-07
Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
Q ++ E+G S ++ L G +D A+L IE GE I+G +G GKST+++
Sbjct: 19 QRAFKYIEQGLSKEQILEKTGLSLGVKD------ASLAIEEGEIFVIMGLSGSGKSTMVR 72
Query: 469 LIMGLEKPRGGEVLLGEHN-------------------VLPNYFEQNQAEALDLDKTVLE 509
L+ L +P G+VL+ + V ++ LD +E
Sbjct: 73 LLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132
Query: 510 TVAEAAEDWRIDDIKGL--LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567
AE+ R + L +G N+ D LSGG + R+ + + +L++
Sbjct: 133 LAGINAEERREKALDALRQVGLENYAHSYPDE----LSGGMRQRVGLARALAINPDILLM 188
Query: 568 DEPTNHLD-IPSKEMLEEAI---SEYKGTVITVSHDRYFVKQIVNRV 610
DE + LD + EM +E + ++++ T++ +SHD +I +R+
Sbjct: 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235
|
Length = 400 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 37/225 (16%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ +N+S Y+ LKDV++ + KG+ +VG NG+GK+T +++ G E+ SG
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG--- 64
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE-EMEIAGKLERVQKALESAVDDMDLMG 214
+I + +Q +R+ F+ + + G + + A
Sbjct: 65 ------EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVA------------ 106
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
F L + AV D + +VS+ + ++ + D + S G + R+++ +L
Sbjct: 107 -----FGL---ENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVL 157
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
+P +++LDE T+ LD D + L + K ++ ++ I+HD
Sbjct: 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
|
Length = 269 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 46/212 (21%), Positives = 76/212 (35%), Gaps = 46/212 (21%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+++ L Y R + + GE I+G +G GK+TLL + P GEV
Sbjct: 8 SVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM 67
Query: 486 HNVLPN-------------------YFEQNQAEALDLDKTVLETVAE------------- 513
+ + Q+ + L + + + E
Sbjct: 68 RDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI 127
Query: 514 --AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
A DW L R A +D + SGG + RL + +V L+ +DEPT
Sbjct: 128 RATAGDW--------LERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT 179
Query: 572 NHLDIPSK----EMLEEAISEYKGTVITVSHD 599
LD+ + ++L + E V+ V+HD
Sbjct: 180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211
|
Length = 258 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 7e-07
Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQA----- 498
N+ I G+ T I+G GCGKS+LL I+G + G+V N FE ++
Sbjct: 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80
Query: 499 ------EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------DRKV 541
+ L+ TV E + + + K + C+ + D+ +R +
Sbjct: 81 VAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLEEAISEY----KGTVITV 596
+L SGG++ R+ + + + + ++ LD+P + LDI S +++E I ++ K T++ V
Sbjct: 140 NL-SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 597 SH 598
+H
Sbjct: 199 TH 200
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 8e-07
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 38/216 (17%)
Query: 413 RFPER--GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
FPE G V+ ++NL G + + T+ GE I G G G++ L + +
Sbjct: 250 LFPEPPEEGIGEPVLEVRNLSGGGK----VRDVSFTVRAGEILGIAGLVGAGRTELARAL 305
Query: 471 MGLEKPRGGEVLL-GEHNVLPNYFEQNQA-----------EALDLDKTVLETVA------ 512
G GE+LL G+ + + + +A E L LD ++ E +
Sbjct: 306 FGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR 365
Query: 513 --------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
E + L K ++ + LSGG + ++ +++ +
Sbjct: 366 FSRRGLIDRRKERALAERYIRRL---RIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKV 422
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEY--KG-TVITVS 597
L+LDEPT +D+ +K + I E +G ++ +S
Sbjct: 423 LILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMIS 458
|
Length = 500 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-07
Identities = 41/160 (25%), Positives = 53/160 (33%), Gaps = 48/160 (30%)
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVL 508
G T I GPNG GKST+L I + LG +A
Sbjct: 20 EGSLTIITGPNGSGKSTILDAI---------GLALGGAQSATRRRSGVKA---------- 60
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL--LSGGEKARLAFCKFM----VKPS 562
C A + + LSGGEK A + +KP
Sbjct: 61 --------------------GCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPR 100
Query: 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHD 599
L +LDE LD + L EAI E+ VI ++H
Sbjct: 101 PLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHL 140
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 8e-07
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 63/237 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--------QEEPD 150
+++NI+K++ GV L +V+ +V+ GE V L G NGAGK+T +++++G E
Sbjct: 7 EMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF 66
Query: 151 SGNVIKAKSNMK------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
G ++A N++ IA + QE A +E+ + +
Sbjct: 67 EGEELQAS-NIRDTERAGIAIIHQEL--------------ALVKELSVLENI-------- 103
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
+G + ++ + D + + KL+ +L + V + G
Sbjct: 104 -------FLGNEITPGGIM-------DYDAMYLRAQKLLAQLKLDINPATP-VGNLGLGQ 148
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISH 314
Q + + K L + LL+LDEPT L LD I L+ + + ISH
Sbjct: 149 QQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK----AHGIACIYISH 201
|
Length = 506 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 8e-07
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR----GGEVLLGEHNVLPN-------- 491
NL+++RGE A++G +G GKS I+GL P GE+LL +LP
Sbjct: 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIA 65
Query: 492 YFEQNQAEALDLDKTVLETVAE-AAEDWRI-----DDIKGLLGRCNFKADMLDRKVSL-- 543
QN A L T+ A E R + L+ + D + L
Sbjct: 66 TIMQNPRTAF----NPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK 121
Query: 544 ----LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVIT 595
LSGG R+ ++ L+ DEPT LD+ ++ ++L E + ++
Sbjct: 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILL 181
Query: 596 VSHDRYFVKQIVNRV 610
++HD V +I + V
Sbjct: 182 ITHDLGVVARIADEV 196
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 63/221 (28%), Positives = 89/221 (40%), Gaps = 64/221 (28%)
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI----------AF 165
++ EV+ GE + LVG NGAGK+T L +AG P SG++ A ++ A+
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQR 225
LSQ+ F M + L Q + +
Sbjct: 74 LSQQ--------QTPPFA------MPVFQYLTLHQPDKTRTEAVASALNEV--------- 110
Query: 226 KAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQMRMSLGKILLQ-DPD---- 279
A+A+ LD KL R V S G WQ R+ L ++LQ PD
Sbjct: 111 -AEALGLD------DKL-----------GRSVNQLSGGEWQ-RVRLAAVVLQVWPDINPA 151
Query: 280 --LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315
LLLLDEP N LD+ L+ L + Q + +V+ SHD
Sbjct: 152 GQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192
|
Length = 248 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 55/224 (24%), Positives = 88/224 (39%), Gaps = 62/224 (27%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161
+ +++ V +G+ ++G +G GKTT LR+I GQ PD G ++ N+
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81
Query: 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ L Q + V + +E ++ L L S V +M
Sbjct: 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL------LHSTV----MM----- 126
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
K +AV L +KLMP + S G R +L + + +P
Sbjct: 127 -------KLEAVGL----RGAAKLMP-------------SELSGGMARRAALARAIALEP 162
Query: 279 DLLLLDEPTNHLDLDT-------IEWLEGYLGKQDVPMVIISHD 315
DL++ DEP D T I L LG V V++SHD
Sbjct: 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALG---VTCVVVSHD 203
|
Length = 269 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 36/206 (17%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKA 157
++++ S + +L+ + EV+ GE ++G NG+GK+T +AG+E E G V
Sbjct: 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER--VQKALESAVDDMDLMGR 215
++ E+S E AF+ +EI G + +Q AL +
Sbjct: 64 GKDL--------LELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ--E 113
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKL-MPELGFTADDGDRLVAS----FSSGWQMRMSL 270
LD FD D ++ K++ L MPE D L S FS G + R +
Sbjct: 114 PLDRFDF---------QDLMEEKIALLKMPE--------DLLTRSVNVGFSGGEKKRNDI 156
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIE 296
++ + +P+L +LDE + LD+D ++
Sbjct: 157 LQMAVLEPELCILDESDSGLDIDALK 182
|
Length = 248 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 26/212 (12%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GE 480
++ +K + + + +L + GE + G NG GKSTL+K++ G+ P G GE
Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGE 59
Query: 481 VLLGEHNVLPNYFEQNQAE---------ALDLDKTVLETVAEAAE----DWRIDD----- 522
+ + + + L + +V E + E R+
Sbjct: 60 IYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL 119
Query: 523 -IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
K LL AD + R V GG++ + K + K + LL+LDEP++ L E+
Sbjct: 120 RAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI 179
Query: 582 LEEAISEYKG---TVITVSHDRYFVKQIVNRV 610
L + I + K + +SH VK + + +
Sbjct: 180 LLDIIRDLKAHGVACVYISHKLNEVKAVCDTI 211
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 53/237 (22%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
++ +N+S +Y+ T + DV E ++G+ +VG G+GK+T ++ I +P +G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 153 NV----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-EEMEIAGKLERVQKALESAV 207
V I K ++ R VR+ F+ E ++ E V
Sbjct: 63 TVTVDDITITHKTKDKYI---------RPVRKRIGMVFQFPESQL----------FEDTV 103
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS----SG 263
+ + G K +NLD + +L+ +LGF+ D V S S SG
Sbjct: 104 EREIIFGP----------KNFKMNLDEVKNYAHRLLMDLGFSRD-----VMSQSPFQMSG 148
Query: 264 WQMR-MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
QMR +++ IL +PD+++LDEPT LD + L+ ++ ++++SHD
Sbjct: 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205
|
Length = 286 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 48/196 (24%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
+++L V VK+GE + L+G +G+GK+T L I+AG ++ SG V + + Q
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV---------SLVGQP 73
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES--------AVDDMDLMGRLLDEFD 221
+ EE + + V +S A+++++L L E
Sbjct: 74 -------------LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESS 120
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV---ASFSSGWQMRMSLGKILLQDP 278
Q + A L+ +LG G RL A S G Q R++L + P
Sbjct: 121 -RQSRNGAK----------ALLEQLGL----GKRLDHLPAQLSGGEQQRVALARAFNGRP 165
Query: 279 DLLLLDEPTNHLDLDT 294
D+L DEPT +LD T
Sbjct: 166 DVLFADEPTGNLDRQT 181
|
Length = 228 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 32/236 (13%)
Query: 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K++NI K + + L +V+ E+ +GE + ++G G+GKTT + + PD+G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSR-TVREEFMSAFKEEMEIAGKLERV-QKA----LESA 206
+ + K ++E E + + +++ K+ EI ++ V Q A E
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 207 VDDMDLMGRL---LDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSS 262
++ + G + + + + +R A+ + L LD + P EL S
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFEL--------------SG 168
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDTIEWLE--GYLGKQDVPMVIISHD 315
G + R++L IL +PD L+ DEPT LD E LE L KQ +++++HD
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224
|
Length = 305 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 38/213 (17%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I F D +LT+ G+ A +G NG GKS L + + G GE
Sbjct: 2 SSLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ 61
Query: 483 LGEHNVLPNYFEQNQ----------------AEALDLDKTVLETVAEAAEDWRIDDIKGL 526
++ FEQ Q D +T E + + +D
Sbjct: 62 SQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKD--------- 112
Query: 527 LGRCNFKA------DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
RC A +LDR+ LS GE + C+ ++ LL+LDEP + LD+ S++
Sbjct: 113 PARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQ 172
Query: 581 MLEEAISEYKGTVITVSHDRYFVKQIVNRVVEV 613
L E ++ ++ + ++NR E+
Sbjct: 173 QLAELLA-------SLHQSGITLVLVLNRFDEI 198
|
Length = 490 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 54/247 (21%), Positives = 91/247 (36%), Gaps = 41/247 (16%)
Query: 405 FQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPN 459
K S ++ +KNL ++++ + N + T E+ + IIG +
Sbjct: 2 MDYFMKKKLKVPNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNS 61
Query: 460 GCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD---------LDKTVLET 510
G GKSTL+ GL K + G + +G+ + L + V
Sbjct: 62 GSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV-SM 120
Query: 511 VAEAAE-----DWRIDDI------------------KGLLGRCNFKADMLDRKVSLLSGG 547
V + E D DI K L + L+R LSGG
Sbjct: 121 VFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGG 180
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVK 604
+K R+A + +L+ DEPT LD + + + I + K TV ++H V
Sbjct: 181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL 240
Query: 605 QIVNRVV 611
++ + V+
Sbjct: 241 EVADEVI 247
|
Length = 320 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ EN++ +Y G VLKDV++ + G+KV +VG +G+GK+T LR++ + SG++
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 64/209 (30%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+KL +I+ Y + + D+T V++GE+V ++G +GAGK+T L +IAG P SG++
Sbjct: 2 LKLTDITWLYHHLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLN 59
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKE---------EMEIA-G-----KLERVQKA 202
+ S+ VSM F+E I G KL Q+
Sbjct: 60 GQDHTTTPPSRR-PVSM----------LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQR- 107
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ L A+ + ++ L RL S
Sbjct: 108 ------------------EKLHAIARQMGIEDL-----------------LARLPGQLSG 132
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R++L + L+++ +LLLDEP + LD
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 87/252 (34%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++ Y LK++ ++ K + L+G +G GK+T LR + + G I+
Sbjct: 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG 61
Query: 158 KSNMKIAFLSQEF------EVSMSRTVREEF-------MSAF--------------KEEM 190
K+ F Q+ V + R V F MS + K+E+
Sbjct: 62 ----KVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 191 EIAGKLERVQKALESAVDDMDLMGRLLDEF-DLLQRKAQAVNLDTLDAKVSKLMPELGFT 249
+ E V+++L+ A L DE D L A
Sbjct: 118 D-----EIVEESLKKAA--------LWDEVKDRLHDSAL--------------------- 143
Query: 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYL 302
S G Q R+ + + L +P++LLLDEPT+ LD + I+ L
Sbjct: 144 ---------GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL---- 190
Query: 303 GKQDVPMVIISH 314
K+ +VI++H
Sbjct: 191 -KKKYTIVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 54/175 (30%)
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVI--------KAKSNMKIAFLSQEFEVSMSRTVR 179
L+G +G GKTT LR++AG E+PDSG+++ I + Q + + TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 180 EEFMSAFKEEMEIAGKLE---RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236
E AF +M + E RV +AL V L+
Sbjct: 61 ENV--AFGLKMRKVPRAEIKPRVLEALRL------------------------VQLEEF- 93
Query: 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
DR S G Q R++L + L+ P +LLLDEP + LD
Sbjct: 94 ----------------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALD 132
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 42/185 (22%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
G+ A++G NG GKSTLLK++ G +P G +L+ F + AL
Sbjct: 25 FDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRF-ASTTAALAAG 80
Query: 505 KTV----LETVAE--AAEDWRIDDIKGLLGRCNFKADMLDR------------------- 539
+ L V E AE+ LG+ K +++R
Sbjct: 81 VAIIYQELHLVPEMTVAENL-------YLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID 133
Query: 540 ---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVI 594
+ LS G++ + K + + + ++ DEPT+ L E L I E + G VI
Sbjct: 134 PDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVI 193
Query: 595 T-VSH 598
VSH
Sbjct: 194 LYVSH 198
|
Length = 501 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 43/199 (21%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
+L+D++ ++ G L+G NGAGK+T L+ +AG + G +
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGGG-------------APRGA 60
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA--------VDDMDLMGRLLDEFDL 222
V+ T+ E ++A A +L R++ L A ++ L+GR
Sbjct: 61 RVTGDVTLNGEPLAAID-----APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPH---- 111
Query: 223 LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ------ 276
R+A A+ + + + G TA G R V + S G R+ ++L Q
Sbjct: 112 -ARRAGALTHRDGEI-AWQALALAGATALVG-RDVTTLSGGELARVQFARVLAQLWPPHD 168
Query: 277 ---DPDLLLLDEPTNHLDL 292
P LLLDEPT LDL
Sbjct: 169 AAQPPRYLLLDEPTAALDL 187
|
Length = 272 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172
++DV++++ KGE +G+ G+ GA +T + + G E +G + +
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN---------- 313
Query: 173 SMSRTVREEFMSAF---KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK--- 226
+ E F EE G + S + ++ ++ LL
Sbjct: 314 --NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIR---NYKNKVGLLDNSRMK 368
Query: 227 --AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
Q V +D++ K ++G S S G Q ++ +G+ LL P++L+LD
Sbjct: 369 SDTQWV-IDSMRVKTPGHRTQIG-----------SLSGGNQQKVIIGRWLLTQPEILMLD 416
Query: 285 EPTNHLDLDT---IEWLEGYLGKQDVPMVIIS 313
EPT +D+ I L L K+D ++IIS
Sbjct: 417 EPTRGIDVGAKFEIYQLIAELAKKDKGIIIIS 448
|
Length = 491 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 108 KGVTV---LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+G++V ++DV++EV+ GE VG+ G+ G G+T + G P SG +
Sbjct: 8 RGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT 58
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 30/143 (20%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLLGEHNVLPNYFEQNQAEA 500
+ ++ GE ++G G G STLLK + + G++ E+ E
Sbjct: 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF-AEKYPGEI 85
Query: 501 L-----DLDK---TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
+ D+ TV ET+ A RC + V +SGGE+ R+
Sbjct: 86 IYVSEEDVHFPTLTVRETLDFAL-------------RCKG-----NEFVRGISGGERKRV 127
Query: 553 AFCKFMVKPSTLLVLDEPTNHLD 575
+ + +V +++L D T LD
Sbjct: 128 SIAEALVSRASVLCWDNSTRGLD 150
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 21/193 (10%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +T KNL Y+ R + +LT+ GE ++GPNG GK+T +++G+ G ++
Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII 61
Query: 483 LGEHNV--LP---------NYFEQNQA-----EALDLDKTVLETVAEAAEDWRIDDIKGL 526
+ + ++ LP Y Q + D VL+ + + + R D L
Sbjct: 62 IDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANEL 121
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPSKEML 582
+ + + D LSGGE+ R+ + + ++LDEP +D I K ++
Sbjct: 122 MEEFHI-EHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII 180
Query: 583 EEAISEYKGTVIT 595
E G +IT
Sbjct: 181 EHLRDSGLGVLIT 193
|
Length = 241 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
VL+++ E+K G+ V +VG +GAGKTT LR+I G ++ + S +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGK-----VEVP 451
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+ ++S + E+ F E + + L S D++ +L+
Sbjct: 452 KNTVSALIPGEYEPEFGEVT--------ILEHLRSKTGDLNAAVEILNR----------- 492
Query: 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
+ L + + + S+G + R L K+L + P++LL+DE HL
Sbjct: 493 ---------AGLSDAVLYRRKFSE-----LSTGQKERAKLAKLLAERPNVLLIDEFAAHL 538
Query: 291 DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322
D T + + + + +++++H + L
Sbjct: 539 DELTAVRVARKISELAREAGITLIVVTHRPEVGNAL 574
|
Length = 593 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 3e-06
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 33/210 (15%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRG----GEVLL 483
NL G+ + + ++ ++ T+++GP G GK+T L+ + + +K G G+VLL
Sbjct: 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLL 85
Query: 484 GEHNVL------------------PNYFE----QNQAEALDLDKTVLETVAEAAEDWRID 521
G ++ PN F N + K V R+
Sbjct: 86 GGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLT 145
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
++ G + D L LSGG++ L + + +L+LDEPT+ LD + E
Sbjct: 146 EV----GLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK 201
Query: 582 LEEAISEY--KGTVITVSHDRYFVKQIVNR 609
+EE I + TVI V+H+ +I +R
Sbjct: 202 IEEFIRSLADRLTVIIVTHNLAQAARISDR 231
|
Length = 276 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 4e-06
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 30/222 (13%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
K N++ Y L D+ ++++ + L+G +G GK+T LR +
Sbjct: 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFN-------------R 50
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
N KIA + E+ + V+ + + A ++ + + ++ ++S +++ +L
Sbjct: 51 MNDKIAKIDGLVEIE-GKDVKNQDVVALRKNVGMV--FQQPNVFVKSIYENISYAPKL-- 105
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLGKILL 275
N D +A V + ++G + D+L + S G Q R+ + + L
Sbjct: 106 -------HGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315
P LLLLDEPT+ LD + +E L + ++ M++++H+
Sbjct: 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200
|
Length = 246 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 41/208 (19%), Positives = 91/208 (43%), Gaps = 35/208 (16%)
Query: 94 ISSGVKLENISKSYKGVTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144
I + +++ N+SK+++ T L K V++ +++G+ + ++G NG+GK+T +++A
Sbjct: 1 IETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 145 GQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
G EP SG ++ ++ + F F R + ++ ++ + I L+
Sbjct: 61 GMIEPTSGEIL--INDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD----FPL 114
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
D++ R F+ L+ +G D + + G
Sbjct: 115 RLNTDLEPEQRRKQIFETLRM--------------------VGLLPDHANYYPHMLAPGQ 154
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDL 292
+ R++L + L+ P +++ DE LD+
Sbjct: 155 KQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 49/193 (25%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-GGEVLLGEHNVL--------- 489
+L I TA IGP+GCGKST L+ + M ++ R G++ L ++
Sbjct: 39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVEL 98
Query: 490 ----------PNYFEQNQAEALDLDKTVLETVAE-------AAEDWRIDDI--KGL--LG 528
PN F K++ E VA A +D+I L G
Sbjct: 99 RARVGMVFQKPNPFP----------KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAG 148
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
D L + LSGG++ RL + + V P +L +DEP + LD + +EE I
Sbjct: 149 LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVIL-MDEPCSALDPIATAKVEELID 207
Query: 588 EYKG--TVITVSH 598
E + T++ V+H
Sbjct: 208 ELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 51/228 (22%)
Query: 76 EFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAG 135
+FEN K NK SN + K+ + ++ + T+L VT GE + ++G +G+G
Sbjct: 50 KFENMK--NKGSNI-KRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSG 106
Query: 136 KTTQLRIIAGQEEPDS--GNVIK-----AKSNMK-IAFLSQEFEVSMSRTVREEFMSAFK 187
K+T L +AG+ + ++ G ++ K +K F++Q+ + TVRE + F
Sbjct: 107 KSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLV--FC 164
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
+ + L + +K A++V + ELG
Sbjct: 165 SLLRLPKSLTKQEKI----------------------LVAESV------------ISELG 190
Query: 248 FTADD----GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
T + G+ + S G + R+S+ +L +P LL+LDEPT+ LD
Sbjct: 191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
Length = 659 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 80/269 (29%)
Query: 94 ISSGVKLENISKSY--------------------KGVTVLKDVTWEVKKGEKVGLVGVNG 133
++ V ++N++K Y K L D++ + +G+ +GLVG+NG
Sbjct: 1 MNVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGING 60
Query: 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193
+GK+T II G P G V + EVS+ + I+
Sbjct: 61 SGKSTLSNIIGGSLSPTVGKVDRNG------------EVSV---------------IAIS 93
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
L +E+ M MG +RK ++ + P++ ++ G
Sbjct: 94 AGLSGQLTGIENIEFKMLCMG--------FKRK-----------EIKAMTPKIIEFSELG 134
Query: 254 DRL---VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLG 303
+ + V +SSG + ++ + +PD+L++DE + D LD I +
Sbjct: 135 EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK---- 190
Query: 304 KQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+Q+ + +SH+ + Q CTKI E G
Sbjct: 191 EQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219
|
Length = 264 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-06
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE 181
GE + +VG G+GKTT R +A + P G VI + + ++ + ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYI--DGEDILEEVLDQLLLIIVGGKK 58
Query: 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232
+ + + +A L +K + +LDE L Q L
Sbjct: 59 ASGSGELRLRLA--LALARKLKPDVL--------ILDEITSLLDAEQEALL 99
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 75/321 (23%)
Query: 98 VKLENISKSYK----GVTVLKDVTW----------------EVKKGEKVGLVGVNGAGKT 137
VK E+++K YK LKD+ + EV +GE VG++G+NG+GK+
Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKS 64
Query: 138 TQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197
T +IAG P+ G V S IA S + G+L
Sbjct: 65 TLSNLIAGVTMPNKGTVDIKGSAALIAISSG-----------------------LNGQL- 100
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG---D 254
+ +++++L G ++ L ++ K+ +++PE+ AD G
Sbjct: 101 -------TGIENIELKGLMMG----LTKE-----------KIKEIIPEIIEFADIGKFIY 138
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-TIEWLE--GYLGKQDVPMVI 311
+ V ++SSG + R+ + +PD+L++DE + D T + L+ +Q +
Sbjct: 139 QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFF 198
Query: 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIE--SQYAAWEKQQREIEQT 369
ISH + + CTK + G + Y G+ + V +++ +Q + E++ EQ
Sbjct: 199 ISHSLSQVKSFCTKALWLHYGQVKEY-GDIKEVVDHYDEFLKKYNQMSVEERKDFREEQI 257
Query: 370 KDLINRLGAGANSGRASSAEK 390
+ L +GR +K
Sbjct: 258 SQFQHGLLQEDQTGRERKRKK 278
|
Length = 549 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 63/180 (35%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172
L +++ VK G L+G +GAGKTT L ++AG++ +G + + I + +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT--AGVI---TGEILIN--GRPLDK 75
Query: 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALE-SAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ R+ + + E+ ++ V++AL SA LL + QRK
Sbjct: 76 NFQRS------TGYVEQQDVHSPNLTVREALRFSA---------LLRGLSVEQRK----- 115
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
R+++G L P +L LDEPT+ LD
Sbjct: 116 -----------------------------------RLTIGVELAAKPSILFLDEPTSGLD 140
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+K+EN+S SY LK+V++E+ +GE V ++G NG+GK+T +I+ G +P SG +
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
|
Length = 271 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 40/180 (22%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+L+DV+ V +G+ ++G G+GK+T L+ + Q E G V +S IA++ Q+
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS---IAYVPQQAW 731
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ M+ TVR + F EE D L A AV
Sbjct: 732 I-MNATVRGNIL-FFDEE----------------------------DAARL----ADAVR 757
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ L+A +++L G + G++ V + S G + R+SL + + + D+ LLD+P + LD
Sbjct: 758 VSQLEADLAQLGG--GLETEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
Length = 1560 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 425 VTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y+ R ++ N T+ G+ A +G +GCGKST+LKLI L P G++
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
Query: 482 LLGE-HNV 488
++ + HN+
Sbjct: 443 IINDSHNL 450
|
Length = 1466 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 1e-05
Identities = 58/236 (24%), Positives = 108/236 (45%), Gaps = 39/236 (16%)
Query: 392 LERLQE--EEQIEKPFQRKQMK--IRFPERGRSGRSVVTIKNLEFGYEDRL--LFNRANL 445
+ERL+E E + E P+Q ++ +P RGR V +N Y + L + N+
Sbjct: 1253 VERLKEYSETEKEAPWQIQETAPPSGWPPRGR-----VEFRNYCLRYREDLDLVLRHINV 1307
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL--------LGEHNVL-------- 489
TI GEK I+G G GKS+L + + + GE++ +G H++
Sbjct: 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367
Query: 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL----L 544
P F + LD + E W ++ L + D LD + + L
Sbjct: 1368 DPVLFSGSLRMNLDPFSQYSDE-----EVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI-SEYKG-TVITVSH 598
S G++ + + +++ + +LVLDE T +D+ + +++ I ++++ TV+T++H
Sbjct: 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAH 1478
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 40/230 (17%)
Query: 419 RSGRSVVTIKNLEFGY----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
+++I+NL + + IE GE A++G +G GKS I+GL
Sbjct: 1 MMTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60
Query: 475 KPRG-----GEVLLGEHNVLPNYFE---------------QNQAEALDLDKTVLETVAEA 514
G +L ++L E Q +L+ T+ + +AE
Sbjct: 61 PSPAAAHPSGSILFDGEDLL-AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 515 --------AEDWRIDDIKGLLGRCNF--KADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
R LL LD LSGG++ R+ + L
Sbjct: 120 LRLHRGLSRAAAR-ARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL 178
Query: 565 LVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
L+ DEPT LD+ + ++L+E +E ++ ++HD V++ +RV
Sbjct: 179 LIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRV 228
|
Length = 534 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 98 VKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++LEN+S + G +LKD+++E+K G+++ + G +G GK++ R +AG SG +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 157 AKSNMKIAFLSQ 168
+ FL Q
Sbjct: 61 P-EGEDLLFLPQ 71
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 67/273 (24%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+K+E ++ +Y G LK + +KKGE ++G NGAGK+T + + G +P SG +
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 155 ------------IKAKSNMKIAFLS---QEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199
+K + ++ + F Q F S+ + V ++ E E+ +RV
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVR---KRV 122
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
AL+ + L D+
Sbjct: 123 DNALKR-------------------------------TGIEHLK----------DKPTHC 141
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
S G + R+++ +L+ +P +L+LDEPT LD + ++ L + + ++I +HD
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201
Query: 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348
+ C + + G +GN + EK
Sbjct: 202 IDIVPLYCDNVFVMKEGRV-ILQGNPKEVFAEK 233
|
Length = 283 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 24/207 (11%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVS 173
DV++ +++GE +G+ G+ GAG+T ++ + G GNV + I +Q
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233
++ V E+ ++ I L V K + +V L F R A L
Sbjct: 338 IA-MVPED-----RKRHGIVPILG-VGKNITLSV---------LKSFCFKMRIDAAAELQ 381
Query: 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD 293
+ + + +L + S G Q + L K+LL +P +L+LDEPT +D+
Sbjct: 382 IIGSAIQRL----KVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVG 437
Query: 294 T---IEWLEGYLGKQDVPMVIISHDRA 317
I L L ++ V ++++S + A
Sbjct: 438 AKYEIYKLINQLAQEGVAIIVVSSELA 464
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 38/227 (16%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
V+ +++S +Y L D+++ + +G L+G NG+GK+T ++I G PD
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP-- 63
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
N KI T+ + + +E++ I + Q + DD+
Sbjct: 64 ----NSKITVDGI--------TLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDV----- 106
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
F L R AV + V ++ ++G D D A+ S G + R+++ IL
Sbjct: 107 ---AFGLENR---AVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILA 159
Query: 276 QDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
+P +++LDE T+ LD L I L+ K ++ ++ I+HD
Sbjct: 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLK---KKNNLTVISITHD 203
|
Length = 282 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 27/144 (18%)
Query: 479 GEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
G++LL ++ L N F E + + ++ E + ED +D+K C
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRA---CK 1333
Query: 532 FKA---------DMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
F A + D V LSGG+K R+A + +++ +L+LDE T+ LD S
Sbjct: 1334 FAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393
Query: 579 KEMLEEAISEYKG----TVITVSH 598
++++E+ I + K T+IT++H
Sbjct: 1394 EKLIEKTIVDIKDKADKTIITIAH 1417
|
Length = 1466 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 41/231 (17%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
R V+ ++NL + A + +++RGE AI+G +G GKS +M L +
Sbjct: 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA 69
Query: 478 GGEV-----LLGEHN-VLPNYFEQNQAE------------------ALDLDKTVLETVAE 513
GG V LL + + EQ+ A+ +L+ TV E +AE
Sbjct: 70 GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAE 129
Query: 514 -------AAEDWRIDDIKGLLG--RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
A+ + + + K +L R +L R LSGG + R+ + +
Sbjct: 130 SIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV 189
Query: 565 LVLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVV 611
L+ DEPT LD+ + + + I E VI ++HD V +I +RV+
Sbjct: 190 LIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL 240
|
Length = 623 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++LEN+S SY G L+++ +KKGE +G++G NG+GK+T + G P G V+
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
|
Length = 274 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 47/232 (20%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174
D+ +K+GE + LVG +G+GK+ I G P +++ +I +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGL-----TQTSGEILLDGRPLLPLS 58
Query: 175 SR-----TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
R T+ + +AF + ++L L+ +A
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSK---------QARALILEALEA 109
Query: 230 VNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
V L +V K P +L S G R+ + LL +P L+ DEPT
Sbjct: 110 VGLPD-PEEVLKKYPFQL--------------SGGMLQRVMIALALLLEPPFLIADEPTT 154
Query: 289 HLDLDT----IEWLEGYLGKQDVPMVIISHDRAFL----DQLCT----KIVE 328
LD+ ++ L +++I+HD + D++ +IVE
Sbjct: 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 427 IKNLEFGYEDRL-LFNRANL--------TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++NL + R F R + T+ G+ AIIG NG GKSTL K++ G+ +P
Sbjct: 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT 66
Query: 478 GGEVLLGEH 486
GE+L+ +H
Sbjct: 67 SGELLIDDH 75
|
Length = 267 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 66/247 (26%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++EN+S Y VLK+V+++VK GEK+G+VG GAG
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAG-------------------- 46
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK------LERVQKALESAVDD 209
KS + +A F+ A + ++EI G LE ++ +L D
Sbjct: 47 --KSTLILALFR--------------FLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQD 90
Query: 210 MDL-MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L G + NLD D + + ++ G L S G + +
Sbjct: 91 PTLFSGTI------------RSNLDPFDEYSDEEIYGALRVSEGGLNL----SQGQRQLL 134
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD-RAFLDQLCTK 325
L + LL+ P +L+LDE T +D T ++ + + + ++ I+H R +D K
Sbjct: 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDK 192
Query: 326 IVETEMG 332
I+ + G
Sbjct: 193 ILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 48/224 (21%), Positives = 83/224 (37%), Gaps = 62/224 (27%)
Query: 128 LVGVNGAGKTTQLRIIA----GQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFM 183
+VG NGAGKTT + + G+ P+S K L +E EV V+ F
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNS------KGGAHDPKLIREGEVRAQ--VKLAFE 78
Query: 184 SAFKEEMEIAGKLERVQKALESAV----DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239
+A ++ I L LE+ + + + L
Sbjct: 79 NANGKKYTITRSLA----ILENVIFCHQGESN---------WPLLD-----MRGRCSG-- 118
Query: 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW-- 297
G++++AS +R++L + + +L LDEPT +LD + IE
Sbjct: 119 -------------GEKVLASLI----IRLALAETFGSNCGILALDEPTTNLDEENIEESL 161
Query: 298 ---LEGYLGKQDVPMVIISHDRAFLDQLCTKIVE---TEMGVSR 335
+E +++ +++I+HD +D I SR
Sbjct: 162 AEIIEERKSQKNFQLIVITHDEELVDAA-DHIYRVEKDGRQKSR 204
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPM 309
DR S S G + R+++G+ LL P+LLL+DEP LDL + + +LE + ++P+
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182
Query: 310 VIISH 314
+ +SH
Sbjct: 183 LYVSH 187
|
Length = 352 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 61/247 (24%)
Query: 92 SSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
S + +K+ N+S Y +L+ V+ E+ + + ++G +G GK+T L+ + E +S
Sbjct: 2 SKLIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELES 61
Query: 152 GNVIKAKSNMKIAFLSQ---EFEVSMSRTVREEFMSAFKEEM-------------EIAG- 194
+ + ++ F +Q E V+++R R+ M K + +I G
Sbjct: 62 ----EVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 195 --KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
KLE + +ESA+ D DL +D ++ K LD
Sbjct: 118 RPKLE-IDDIVESALKDADL-------WDEIKHKIHKSALD------------------- 150
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVP 308
S G Q R+ + + L P +LL+DEP LD + ++ + ++
Sbjct: 151 -------LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELT 203
Query: 309 MVIISHD 315
MVI+SH+
Sbjct: 204 MVIVSHN 210
|
Length = 261 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 34/242 (14%)
Query: 384 RASSAEKKLERLQEEEQIE-KPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLF 440
+AS + K+L E++E +R+ +K P G S +T+ N F + +
Sbjct: 602 QASVSLKRLRIFLSHEELEPDSIERRTIK---PGEGNS----ITVHNATFTWARDLPPTL 654
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVLPNYFEQNQAE 499
N +I G A++G GCGKS+LL ++ ++K G + G +P +Q +
Sbjct: 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVP---QQAWIQ 711
Query: 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEK 549
L + +L +A + + +L C D+ + K LSGG+K
Sbjct: 712 NDSLRENIL--FGKALNEKY---YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQK 766
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-----TVITVSHDRYFVK 604
R++ + + + + + D+P + +D + + E + +G T I V+H ++
Sbjct: 767 QRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLP 826
Query: 605 QI 606
Q+
Sbjct: 827 QV 828
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 53/253 (20%), Positives = 108/253 (42%), Gaps = 49/253 (19%)
Query: 94 ISSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+ + ENI Y + VL ++ ++K GE +G+VG +G+GK+T +++ P
Sbjct: 452 LRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511
Query: 152 GNVIKAKSNMKI---AFLSQEFEVSM------SRTVREEFMSAFKEEMEIAGKLERVQKA 202
G V+ ++ I A+L ++ V + SR++R+ IA L
Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD----------NIA--LCNPGAP 559
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
E + L G +F + G+ + G++ S
Sbjct: 560 FEHVIHAAKLAGAH--DFISELPQ--------------------GYNTEVGEKGAN-LSG 596
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320
G + R+++ + L+ +P +L+ DE T+ LD ++ + + + + ++II+H + +
Sbjct: 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVR 656
Query: 321 QLCTKIVETEMGV 333
C +I+ E G
Sbjct: 657 A-CDRIIVLEKGQ 668
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 69/260 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ + + G+ + +V EV++ E V L+G NGAGKTT + G +P G +
Sbjct: 7 SVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG 66
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEME---IAGKL------ER 198
I+ +IA + Q + TV E + A ++++ +G L
Sbjct: 67 QHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRA 126
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
+AL+ A ++ +G L + R QA NL
Sbjct: 127 ESEALDRAATWLERVGLL----EHANR--QAGNL-------------------------- 154
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPT---NHLDLDTIEWLEGYLGKQ-DVPMVIISH 314
+ G Q R+ + + ++ P++L+LDEP N + ++ L L + +V +++I H
Sbjct: 155 --AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH 212
Query: 315 DRAFLDQLCTKIVETEMGVS 334
D K+V MG+S
Sbjct: 213 D--------MKLV---MGIS 221
|
Length = 255 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 67/242 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI------------IAG 145
+++ ++ S+ V VL V E+ L+G +G+GK+T LR+ ++G
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG 63
Query: 146 QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--------- 196
+ D ++ K M + L + ++ +S F E + + KL
Sbjct: 64 EVYLDGQDIFK----MDVIELRRRVQMVFQIPNPIPNLSIF-ENVALGLKLNRLVKSKKE 118
Query: 197 --ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254
ERV+ ALE A +L DE D LDA KL
Sbjct: 119 LQERVRWALEKA--------QLWDEVK-----------DRLDAPAGKL------------ 147
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL--GKQDVPMVII 312
S G Q R+ + + L P++LL DEPT +LD + +E K+D+ +V++
Sbjct: 148 ------SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLV 201
Query: 313 SH 314
+H
Sbjct: 202 TH 203
|
Length = 250 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDR 316
S G + R+ L + L +P +L+LDEP +HLD++ L L ++I+H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 317 AFLDQLCTKIVETEMGV 333
L +I+ E G
Sbjct: 157 ETL-ASADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 97 GVKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
G+ L+N+S +Y+ T L DV ++ G +G G+GK+T ++++ G P
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 152 GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
G+V I S+ ++ + +R++ F + Q E+ + D+
Sbjct: 62 GSVRVDD--TLITSTSKNKDI---KQIRKKVGLVF--------QFPESQLFEETVLKDVA 108
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
+ F + Q +A+A+ + L +G + ++ S G R+++
Sbjct: 109 FGPQ---NFGVSQEEAEALAREKLAL--------VGISESLFEKNPFELSGGQMRRVAIA 157
Query: 272 KILLQDPDLLLLDEPTNHLD 291
IL +P +L+LDEPT LD
Sbjct: 158 GILAMEPKILVLDEPTAGLD 177
|
Length = 280 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 6e-05
Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 30/224 (13%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K+EN++ Y LK+V+ ++ K L+G +G GK+T +R + + +IK
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND-----LIK- 66
Query: 158 KSNMKIAFLSQEFEVSM-SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
N +I E +VS+ + E + + + ++ S D++ R+
Sbjct: 67 --NCRI-----EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRI 119
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA---SFSSGWQMRMSLGKI 273
N LD V + + DRL + S S G Q R+ + +
Sbjct: 120 -----------HGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIART 168
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
L P ++L DEPT+ LD + +E + K+D +VI++H+
Sbjct: 169 LAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
|
Length = 258 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
F + L FS G + R++L +ILLQD ++LLDEPT LD T
Sbjct: 87 FDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT 133
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 56/208 (26%)
Query: 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ ++ SY G L ++ + + ++ ++G NGAGK+T R G +P SG+V+
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63
Query: 157 -----AKSNMK-------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-GKLERVQKAL 203
K N++ + F + + ++ S TV E +IA G +
Sbjct: 64 RGEPITKENIREVRKFVGLVFQNPDDQI-FSPTV----------EQDIAFGPIN------ 106
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+G LDE +T+ +VS + LG + DR+ S G
Sbjct: 107 ---------LG--LDE-------------ETVAHRVSSALHMLGLE-ELRDRVPHHLSGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ R+++ ++ +P +L+LDEPT LD
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
Length = 277 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 38/191 (19%)
Query: 96 SGVKLENISKSYKGVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++L N+ +Y+ + + +K+GE V L+G NG+GK+T ++ G +P SG +
Sbjct: 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ + + +S A +LE +K + D L
Sbjct: 381 L----------------------LDGKPVS--------AEQLEDYRKLFSAVFSDYHL-- 408
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
FD L + ++ + +L + +DG S+G + R++L L
Sbjct: 409 -----FDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463
Query: 275 LQDPDLLLLDE 285
L++ D+L+LDE
Sbjct: 464 LEERDILVLDE 474
|
Length = 546 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 7e-05
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
+ Y +L+ +++ + G + L G NGAGKTT L++IAG P+ G ++ + ++
Sbjct: 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 162 K 162
K
Sbjct: 66 K 66
|
Length = 200 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 9e-05
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 53/237 (22%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------ 154
E ++ Y TV +++T E+ G ++G NG GK+T LR ++ P G+V
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH 70
Query: 155 ----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
+ +I L+Q TV+E + R +K E AV
Sbjct: 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPL---FTRWRKEDEEAV--- 124
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
+K M G T D+ V + S G + R +
Sbjct: 125 -----------------------------TKAMQATGIT-HLADQSVDTLSGGQRQRAWI 154
Query: 271 GKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+L Q+ ++LLDEPT LD +D +E L ++ + + HD L+Q C
Sbjct: 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD---LNQAC 208
|
Length = 265 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 9e-05
Identities = 50/226 (22%), Positives = 106/226 (46%), Gaps = 38/226 (16%)
Query: 102 NISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKA 157
NIS+ Y + +LKD+T ++ G++G +G+GK+T L+++ E DS K
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS----KI 67
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA--GKLERVQKALES-AVDDMDLMG 214
K + K+ + ++ + +R+E F++ + + L+S + + +
Sbjct: 68 KVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK 127
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLG 271
++++E + ++G + DRL + S G Q R+++
Sbjct: 128 KIVEE----------------------CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
+ L P +LL+DEPT+ +D+ + +E + K ++ +VI+SH+
Sbjct: 166 RALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHN 211
|
Length = 257 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-05
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 27/191 (14%)
Query: 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LP 490
L+ + I EK I+G G GKSTLL M + + GGE+ + + L
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 491 NYFEQNQAEALDLDKTVLETV-----AEAAEDWRIDDIKGLLGRCNFKADMLDRKV---- 541
F + + D TV + V A +AE W ++ GL R +++ +D +V
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGG 1443
Query: 542 SLLSGGEKARLAFCKFMVKP-STLLVLDEPTNHLD------IPSKEMLEEAISEYKGTVI 594
S S G++ + + ++K S +++DE T ++D I + M A S Y TVI
Sbjct: 1444 SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM--SAFSAY--TVI 1499
Query: 595 TVSHDRYFVKQ 605
T++H + V Q
Sbjct: 1500 TIAHRLHTVAQ 1510
|
Length = 1560 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 43/231 (18%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSG 152
++++++S Y + D++ +++K L+G +G GK+T LR I + G
Sbjct: 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG 81
Query: 153 NVIKAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--ERVQKALESAV 207
++ N+ I ++ E+ M F + + A K ER + L+ V
Sbjct: 82 EILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIV 141
Query: 208 DDMDLMGRLLDEF-DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
++ L DE D L A S S G Q
Sbjct: 142 EESLTKAALWDEVKDRLHSSA------------------------------LSLSGGQQQ 171
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
R+ + + L P +LLLDEP + LD + +E + K++ ++I++H+
Sbjct: 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
|
Length = 268 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 41/226 (18%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++E++ YK G LK ++ + +G K L+G NGAGK+T L + G P G
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG---- 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---- 212
++ + +E + VR + F++ + Q + DD+
Sbjct: 61 -----RVKVMGREVNAENEKWVRSKVGLVFQDPDD--------QVFSSTVWDDVAFGPVN 107
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
MG LD+ ++ +R +A L + D D+ S G + R+++
Sbjct: 108 MG--LDKDEVERRVEEA--LKAVRMW------------DFRDKPPYHLSYGQKKRVAIAG 151
Query: 273 ILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
+L DPD+++LDEP +LD +T+ + L Q +++ +HD
Sbjct: 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD 197
|
Length = 274 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 32/222 (14%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+EN+ Y LK + + + L+G +G GK+T LR + + G I K
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65
Query: 160 NMKIAFLSQEFEVSMSR-TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
M + +V+ R V F M I E V L
Sbjct: 66 TMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSI---YENVAYGL--------------- 107
Query: 219 EFDLLQRKAQAV-NLDTLDAKVSKLMPELGFTADDGDRLVA---SFSSGWQMRMSLGKIL 274
+AQ + + LD V + + + DRL + S G Q R+ + + +
Sbjct: 108 -------RAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISH 314
+PD++L+DEPT+ LD +E + K++ +VI++H
Sbjct: 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 54/234 (23%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
++++ Y +K+V +V++G L+G +G GKTT LR I + G A+
Sbjct: 8 QDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG----ARVT 63
Query: 161 MKIAFLSQEF------EVSMSRTVREEF--------MSAFKEEMEIAGKLERVQKALESA 206
+I Q+ V+M R V F MS F ++
Sbjct: 64 GRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVF-----------------DNV 106
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSG 263
V + L G + D L++ +++ L +V DRL S G
Sbjct: 107 VAGLKLAG-IRDRDHLMEVAERSLRGAALWDEVK-------------DRLKTPATGLSGG 152
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
Q R+ + + L +P++LL+DEPT+ LD + +E + K+ ++I++H+
Sbjct: 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 58/195 (29%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--------------QEEPDSGNVIKAKSN 160
+ + ++++GE L+G++G+GK+T LR + G D N A
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 161 M----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+++ + Q+F + RTV E AF EM+ K ER ++ E
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENV--AFGLEMQGMPKAERRKRVDE------------ 147
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ + V L A DR S G Q R+ L +
Sbjct: 148 ---------QLELVGL-----------------AQWADRKPGELSGGMQQRVGLARAFAT 181
Query: 277 DPDLLLLDEPTNHLD 291
+ +LL+DEP + LD
Sbjct: 182 EAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-04
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 262 SGWQM-RMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDR 316
SG Q R+++ + LL+DP +L+LDE T+ LD +T +E L + +++I+H
Sbjct: 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA--KGKTVIVIAHRL 155
Query: 317 AFLDQLCTKIVETEMG 332
+ + +I+ + G
Sbjct: 156 S-TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 72/239 (30%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++L ++++S T L ++ EV+ GE + LVG NGAGK+T L +AG SG++
Sbjct: 4 MQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFA 58
Query: 155 ---IKAKSNMKI----AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++A S ++ A+LSQ+ + V +++ + + L V AL A+
Sbjct: 59 GQPLEAWSATELARHRAYLSQQQTPPFAMPVW-HYLTLHQPDKTRTELLNDVAGAL--AL 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQM 266
DD +LG R S G WQ
Sbjct: 116 DD-----------------------------------KLG-------RSTNQLSGGEWQ- 132
Query: 267 RMSLGKILLQ-----DPD--LLLLDEPTNHLDL---DTIEWLEGYLGKQDVPMVIISHD 315
R+ L ++LQ +P LLLLDEP N LD+ ++ L L +Q + +V+ SHD
Sbjct: 133 RVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191
|
Length = 248 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K+EN++ Y T L +V E++ GE VGL+G G+GK+T ++ + G +P SG
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 153 NVI 155
+I
Sbjct: 63 KII 65
|
Length = 287 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 43/239 (17%)
Query: 91 ASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-- 148
S ++ ++ Y G LK++ V + + L+G +G GK+T LR +
Sbjct: 10 VSPTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69
Query: 149 PDS---GNVIKAKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202
P + G +I N+ I LS E EV M ++ + + F + +
Sbjct: 70 PGNHYEGEIILHPDNVNI--LSPEVDPIEVRMRISMVFQKPNPFPKSI------------ 115
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VAS 259
E+ + + G ++R++ L+ +V + + DRL +
Sbjct: 116 FENVAYGLRIRG--------VKRRS------ILEERVENALRNAALWDEVKDRLGDLAFN 161
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
S G Q R+ + + L DP++LL DEPT+ LD +IE L L K V ++I++H+
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHN 219
|
Length = 265 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 24/152 (15%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKP---RGGEVLLGEHNVLPNYFEQNQAEALDL 503
+ GE A++G +G GK+TL+ + G VLL + A
Sbjct: 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQD 107
Query: 504 DK-----TVLETVAEAAE---------DWRIDDIKGLLGRCNFK--ADML---DRKVSLL 544
D TV E + A + + + +L + A+ +V L
Sbjct: 108 DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGL 167
Query: 545 SGGEKARLAF-CKFMVKPSTLLVLDEPTNHLD 575
SGGE+ RLAF + + P LL DEPT+ LD
Sbjct: 168 SGGERKRLAFASELLTDPP-LLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 29/224 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ +++ SY L ++ + ++ E L+G +G GK+T LR + + D N+
Sbjct: 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMND-DIENI--- 60
Query: 158 KSNMKIAFLSQEFEVSMSRTV--REEFMSAFKEEMEIAGKL-ERVQKALESA-VDDMDLM 213
K +I F Q S V R+E F++ + + V L+ A V D +L+
Sbjct: 61 KITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELI 120
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ ++E K + + E T D+ DR +FS G Q R+ + +
Sbjct: 121 DQRVEE----------------SLKQAAIWKE---TKDNLDRNAQAFSGGQQQRICIARA 161
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
L P ++LLDEPT+ LD + +E L K ++++H+
Sbjct: 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205
|
Length = 251 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145
+ L N SY +L +++W+V GE +VG NGAGK+T L +I G
Sbjct: 261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
|
Length = 490 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 26/187 (13%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLL-GEHNVLPNYFEQNQA- 498
+L + GE ++ G NG GKSTL+K++ G+ P G GE++ GE N + +A
Sbjct: 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGV-YPHGTYEGEIIFEGEELQASNIRDTERAG 83
Query: 499 -----EALDLDK--TVLETV---AEAAEDWRIDD------IKGLLGRCNFKADMLDRKVS 542
+ L L K +VLE + E +D + LL + + V
Sbjct: 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-ATPVG 142
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHD 599
L G++ + K + K + LL+LDEPT L +L + I + K I +SH
Sbjct: 143 NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202
Query: 600 RYFVKQI 606
VK I
Sbjct: 203 LNEVKAI 209
|
Length = 506 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 43/198 (21%), Positives = 82/198 (41%), Gaps = 31/198 (15%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF--------- 493
+ ++ GE + G G G+S L+KL+ G + G+V L +
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331
Query: 494 ---EQNQAEALDLDKTVLETVAEAA------------EDWRIDDIKGLLGRCNFKADMLD 538
E +AE + +V + + +A W ++ + N K +
Sbjct: 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSRE 391
Query: 539 RKVSLLSGG--EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---SEYKGTV 593
+ + LSGG +KA L +++ + +++LDEPT +D+ +K + I + V
Sbjct: 392 QLIMNLSGGNQQKAILG--RWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAV 449
Query: 594 ITVSHDRYFVKQIVNRVV 611
+ VS D V + +R+V
Sbjct: 450 LFVSSDLPEVLGVADRIV 467
|
Length = 501 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 61/203 (30%)
Query: 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI------------IAGQE--EPDS 151
S G T+ + + + G+++ LVG +GAGKT+ L I G E E D
Sbjct: 359 SPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELD- 417
Query: 152 GNVIKAKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
++++ Q T+R+ + + + E++Q+ALE+A
Sbjct: 418 ----PESWRKHLSWVGQNPQLPHG----TLRDNVLLGNPDASD-----EQLQQALENA-- 462
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
+ EF LDT +G D L S G R+
Sbjct: 463 -------WVSEF----LPLLPQGLDT----------PIG---DQAAGL----SVGQAQRL 494
Query: 269 SLGKILLQDPDLLLLDEPTNHLD 291
+L + LLQ LLLLDEPT LD
Sbjct: 495 ALARALLQPCQLLLLDEPTASLD 517
|
Length = 588 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 37/202 (18%)
Query: 414 FPERGRSGRSVVTIKNLEFGYEDRLLFNRANLT--IERGEKTAIIGPNGCGKSTLLKLIM 471
+PE G + ++NL Y L N++ ++ GEK I+G G GKSTL+ +
Sbjct: 1 WPEHGE-----IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALF 55
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA----AEDWRIDD--IKG 525
+ G++ + + +D+ LE + + +D + I+
Sbjct: 56 RFLEAEEGKIEI---------------DGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRS 100
Query: 526 LLGRCN-------FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
L + + A + LS G++ L + ++K +LVLDE T +D +
Sbjct: 101 NLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160
Query: 579 KEMLEEAI-SEYKG-TVITVSH 598
++++ I E+ T++T++H
Sbjct: 161 DALIQKTIREEFTNSTILTIAH 182
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 13/95 (13%)
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHL---DIPSKEMLEEAIS-EY 589
L R +S LSGGE RL ++ PS TL VLDEPT L DI K ++ S +
Sbjct: 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDI--KALIYVLQSLTH 860
Query: 590 KG-TVITVSHDRYFVKQIVNRVVEV--KGSNLQDY 621
+G TV+ + H+ + VK + + V+E+ +G NL Y
Sbjct: 861 QGHTVVIIEHNMHVVK-VADYVLELGPEGGNLGGY 894
|
Length = 1809 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 539 RKVSLLSGGEKA------RLAFCKFMV--KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
R + LSGGE+ RLA + LL LDEP LD E L E + E
Sbjct: 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELL 870
Query: 591 ---GTVITVSHDRYFVKQIVNRVVEVKGSN 617
+I +SH ++ + + VK
Sbjct: 871 SDGRQIIIISHVEELKERA-DVRIRVKKDG 899
|
Length = 908 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 43/221 (19%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP----R 477
+ ++N+ + L + +LT++RG A++G +G GKS +G+
Sbjct: 2 PQQIELRNIAL-QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 478 GGEVLLGEHNVLPNYFE--------QNQAEALDLDKT----VLET------------VAE 513
G VLL V P QN A + T ET +
Sbjct: 61 AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTA 120
Query: 514 AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
A E +++ +L F+ +SGG R+ ++ + ++ DEPT
Sbjct: 121 ALEAVGLENAARVLKLYPFE----------MSGGMLQRMMIALALLCEAPFIIADEPTTD 170
Query: 574 LDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
LD+ ++ ++LE + + ++ V+HD V ++ + V
Sbjct: 171 LDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDV 211
|
Length = 254 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPM 309
D L +FS G Q R+ + + L+ P L+ +DEPT LD+ ++ L G + + + +
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 310 VIISHDRA 317
VI++HD A
Sbjct: 206 VIVTHDLA 213
|
Length = 258 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLL 483
I + ++R + N GE A++GP+G GKSTLL + G + G +L
Sbjct: 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILA 129
Query: 484 GEHNVLPNYFEQ----NQAEALDLDKTVLETVAEAA-----------EDWRIDD--IKGL 526
++ Q + L TV ET+ + E + + I L
Sbjct: 130 NNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL 189
Query: 527 -LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
L +C + + + +SGGE+ R++ M+ +LL+LDEPT+ LD + L
Sbjct: 190 GLTKCE-NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT 248
Query: 586 ISE--YKG-TVITVSH 598
+ KG T++T H
Sbjct: 249 LGSLAQKGKTIVTSMH 264
|
Length = 659 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 34/201 (16%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE--QN-- 496
+R + + GE ++G NG GK+T K++ G G+ + ++L N + QN
Sbjct: 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015
Query: 497 ---QAEALDLDKTVLETV-------------AEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
Q +A+D T E + E +W I + GL + DR
Sbjct: 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSL-GL-------SLYADRL 2067
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA----ISEYKGTVITV 596
SGG K +L+ ++ L++LDEPT +D ++ ML I E + V+T
Sbjct: 2068 AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT- 2126
Query: 597 SHDRYFVKQIVNRV-VEVKGS 616
SH + + R+ + VKG+
Sbjct: 2127 SHSMEECEALCTRLAIMVKGA 2147
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 42/167 (25%)
Query: 423 SVVTIKNLEF----GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SV+T KNL + R L N + ++ G TA++G +G GK+TLL ++ G K G
Sbjct: 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG-RKTAG 60
Query: 479 ---GEVLLGEHNVLPN------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR 529
GE+L+ + N Y EQ D+ L TV EA
Sbjct: 61 VITGEILINGRPLDKNFQRSTGYVEQQ-----DVHSPNL-TVREALR------------- 101
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLD 575
F A + LS ++ RL + KPS +L LDEPT+ LD
Sbjct: 102 --FSALLRG-----LSVEQRKRLTIGVELAAKPS-ILFLDEPTSGLD 140
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 65/247 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD----SGNV 154
+++N+ S +LK + + KGE ++G NG+GK+T ++IAG P G++
Sbjct: 9 EIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDI 66
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ ++ L E E R F+ AF+ +EI G V + D +
Sbjct: 67 LFKGESI----LDLEPE---ERAHLGIFL-AFQYPIEIPG------------VSNADFL- 105
Query: 215 RL----------LDEFD------LLQRKAQAVNLDT--LDAKVSKLMPELGFTADDGDRL 256
RL L E D ++ K + V +D L V ++G
Sbjct: 106 RLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV-----------NEG--- 151
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL-EGY--LGKQDVPMVIIS 313
FS G + R + ++ L D +L +LDE + LD+D ++ + EG L + +++I+
Sbjct: 152 ---FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILIT 208
Query: 314 HDRAFLD 320
H + LD
Sbjct: 209 HYQRLLD 215
|
Length = 252 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 6e-04
Identities = 53/224 (23%), Positives = 89/224 (39%), Gaps = 34/224 (15%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + G TVL V+ L+G G+GKTT LR + + SG
Sbjct: 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG--------- 76
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEI---AGKLERVQKALESAVDDMDLMGRLLD 218
+ S + + +++ +E G L + ++ D L G
Sbjct: 77 --------YRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG---- 124
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS---FSSGWQMRMSLGKILL 275
R + V + E+G DRL S S G Q + L + L
Sbjct: 125 -----VRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA 179
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317
+P++LLLDEPT+ LD T E +E ++ + ++I++H+ A
Sbjct: 180 VNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223
|
Length = 276 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 7e-04
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH 314
+ L ++ LL+LDEPT L +E L L Q V ++ ISH
Sbjct: 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 7e-04
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 49/219 (22%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VL+D+++ V+ G++VGL+G G+GK+T L + + LS
Sbjct: 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL-------------------LRLLST 1271
Query: 169 EFEVSMS---------RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
E E+ + +T R+ F ++ +G + ++D + DE
Sbjct: 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK----------NLDPYEQWSDE 1321
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
+ + A+ V L ++ + + +L F DG ++ S+G + M L + +L
Sbjct: 1322 --EIWKVAEEVGLKSV---IEQFPDKLDFVLVDGGYVL---SNGHKQLMCLARSILSKAK 1373
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDR 316
+LLLDEP+ HLD T++ + L KQ VI+S R
Sbjct: 1374 ILLLDEPSAHLDPVTLQIIRKTL-KQSFSNCTVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ +++ + Y + +L I +GE +IG NG GK+TLL + G + G +
Sbjct: 3 KVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 482 LLGEHNVLPNYFEQNQAEALDL---------DKTVLETVA-------EAAEDWRIDDIKG 525
+ ++ + EA+ + TV E +A RI +
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYE 122
Query: 526 LLGRCNFKADMLDRKVS---LLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
L R + +R++ +SGGE+ LA + ++ LL+LDEP+
Sbjct: 123 LFPR------LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
|
Length = 237 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 8e-04
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 58/221 (26%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--------------IKAK 158
+KD + +++GE ++G++G+GK+T +R++ EP G V ++
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
KIA + Q F + TV + +AF E+ ER +KAL++
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDN--TAFGMELAGINAEERREKALDA------------- 148
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+ V L+ + D L S G + R+ L + L +P
Sbjct: 149 --------LRQVGLEN-------------YAHSYPDEL----SGGMRQRVGLARALAINP 183
Query: 279 DLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
D+LL+DE + LD + + L K +V ISHD
Sbjct: 184 DILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
|
Length = 400 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 48/209 (22%), Positives = 79/209 (37%), Gaps = 32/209 (15%)
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLL 467
+++ P G V+ +++L + + + + GE I G G G+S L+
Sbjct: 243 VLRVVKPPS-TPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV 301
Query: 468 KLIMGLEKPRGGEVLLGEHNVLPNYF-------------EQNQAEALDLDKTVLETVAEA 514
+ I GL KP G +LL +VL E L LD ++ E +
Sbjct: 302 EAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG 361
Query: 515 AED------WRIDDIKGLLGRCN-------FKADMLDRKVSLLSGG--EKARLAFCKFMV 559
D D + + +A D LSGG +K LA +
Sbjct: 362 RHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILAR-ELAR 420
Query: 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+P LL+ +PT LD+ + E + E + E
Sbjct: 421 RPD-LLIAAQPTRGLDVGAIEFIHERLLE 448
|
Length = 501 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 42/224 (18%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+ +L ++++ ++ GE + G +G GK+T L+I+A P SG ++
Sbjct: 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 160 NMKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ I+ L E +VS F + + ++ Q D +
Sbjct: 70 D--ISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQP-------DPAIFLDD 120
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
L+ F L L +++L S G + R+SL + L
Sbjct: 121 LERFALPD--------TILTKNIAEL------------------SGGEKQRISLIRNLQF 154
Query: 277 DPDLLLLDEPTNHLDLDTI----EWLEGYLGKQDVPMVIISHDR 316
P +LLLDE T+ LD E + Y+ +Q++ ++ ++HD+
Sbjct: 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK 198
|
Length = 225 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G Q R++ ++LL P + LDE T+ LD ++
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES 126
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 98 VKLENISKSY------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+K +N+S Y L DV EVKKGE + ++G NG+GK+T + + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 152 GNVI 155
G V
Sbjct: 65 GKVY 68
|
Length = 280 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 43/238 (18%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VL+++++ + G++VGL+G G+GK+T L ++ + +++I
Sbjct: 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL--------RLLNTEGDIQID---- 63
Query: 169 EFEVSMSRTVREEFMSAF----KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
VS + +++ AF ++ +G + ++D G+ DE +
Sbjct: 64 --GVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRK----------NLDPYGKWSDE--EIW 109
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ A+ V L ++ + + +L F DG ++ S G + M L + +L +LLLD
Sbjct: 110 KVAEEVGLKSV---IEQFPGQLDFVLVDGGCVL---SHGHKQLMCLARSVLSKAKILLLD 163
Query: 285 EPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDR--AFLDQLCTKIVETEMGVSRTYE 338
EP+ HLD T + + L KQ VI+S R A L+ C + + E R Y+
Sbjct: 164 EPSAHLDPITYQVIRKTL-KQAFADCTVILSEHRIEAMLE--CQRFLVIEENKVRQYD 218
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 47/235 (20%), Positives = 100/235 (42%), Gaps = 51/235 (21%)
Query: 76 EFENKKYSNKQSNTGASSISSGVKLENI-SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGA 134
E +N+ ++ + N + + ++ N+ S+ K V +D+++ V +GE +G G+ G+
Sbjct: 245 ELQNR-FNAMKENVSNLAHETVFEVRNVTSRDRKKV---RDISFSVCRGEILGFAGLVGS 300
Query: 135 GKTTQLRIIAGQEEPDSGNV------IKAKSNMK-----IAFLSQEFEVSMSRTVREE-F 182
G+T + + G ++ G + I +S + +A++++ SR R+ F
Sbjct: 301 GRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE------SR--RDNGF 352
Query: 183 MSAF--KEEMEIAGKLERVQ-KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239
F + M I+ L+ K ++D ++ +LL K +VN +
Sbjct: 353 FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN------ 406
Query: 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G Q ++ + K L P++++ DEPT +D+
Sbjct: 407 -----------------ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444
|
Length = 510 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 254 DRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDT--IEWLEGYLGKQDV 307
DRL S S G Q R+ + + L +P++LL+DEPT+ LD + T IE L L K+D
Sbjct: 138 DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDY 196
Query: 308 PMVIISHD 315
+VI++H+
Sbjct: 197 TIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 23/221 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++ + +LK+V ++ K L+G +G GK+T +R +
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN------------- 50
Query: 158 KSNMKIAFLSQEFEVSMS-RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ N I E + + + + + + ++ ++ +S D++ R+
Sbjct: 51 RMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRI 110
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
E D + + ++L K + L E+ D D+ S G Q R+ + + +
Sbjct: 111 HGEDD--EDFIEERVEESL--KAAALWDEV---KDKLDKSALGLSGGQQQRLCIARTIAV 163
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
P+++L+DEP + LD + +E + K+D +VI++H+
Sbjct: 164 SPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 33/188 (17%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
V L V++ +++G+ + +VG +G GK+T R++ E P G + ++ A E
Sbjct: 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA--DPE 85
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
+ + + ++ F + + G L +K +G++L+E
Sbjct: 86 AQKLLRQKIQIVFQNPY-------GSLNPRKK-----------VGQILEE-------PLL 120
Query: 230 VNLDTLDA-----KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+N L A K +M ++G + DR FS G + R+++ + L+ DPD+++ D
Sbjct: 121 INTS-LSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD 179
Query: 285 EPTNHLDL 292
EP + LD+
Sbjct: 180 EPVSALDV 187
|
Length = 327 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 254 DRLVA---SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDTIEWLEGYLG-KQDVP 308
DRL S S G Q R+ + + L +PD+LL+DEPT+ LD + T + E L K+
Sbjct: 147 DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYT 206
Query: 309 MVIISHD 315
+VI++H+
Sbjct: 207 IVIVTHN 213
|
Length = 259 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 46/227 (20%)
Query: 426 TIKNLEFGY----EDRLLFNRANLTIERGEKTAIIGPNGCGKS-TLLKLIMGLEKP---- 476
I+NL + R + N +L IE GE A++G +G GKS T L ++ L P
Sbjct: 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVY 66
Query: 477 RGGEVLLGEHNVLPNYFEQ-------NQAEAL------------DLDKTVLETVA----- 512
G++ ++L + EQ N+ + L+K + E ++
Sbjct: 67 PSGDIRFHGESLL-HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGM 125
Query: 513 --EAAEDWRIDDIKGLLGRCNFK--ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
EAA +I L R + A L LSGGE+ R+ ++ LL+ D
Sbjct: 126 RREAARG----EILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD 181
Query: 569 EPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
EPT LD+ + ++L E E ++ ++H+ V+++ +RV
Sbjct: 182 EPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVA 228
|
Length = 529 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 47/213 (22%)
Query: 96 SGVKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+G+K ENI + G +++ +++EV G + + G NG GK++ RI+ P G
Sbjct: 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGEL-WPVYGGR 508
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEF---MSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ + K+ ++ Q +++ T+R++ S E+M+ G + K LE +D++
Sbjct: 509 LTKPAKGKLFYVPQRPYMTL-GTLRDQIIYPDS--SEDMKRRGLSD---KDLEQILDNVQ 562
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMS 269
L +L+R E G++A D D L S G + R++
Sbjct: 563 LT-------HILER-------------------EGGWSAVQDWMDVL----SGGEKQRIA 592
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL 302
+ ++ P +LDE T+ + +D +EGY+
Sbjct: 593 MARLFYHKPQFAILDECTSAVSVD----VEGYM 621
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 45/191 (23%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPD---SGNVIKAKSNMKI 163
+L++VT + G L+GV+GAGKTT + ++AG++ E D SG K ++ +I
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954
Query: 164 AFLSQEFEV-SMSRTVREEFM-SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+ ++ ++ S TVRE + SAF + K E++ +DE
Sbjct: 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKM---------------MFVDEV- 998
Query: 222 LLQRKAQAVNLDTL-DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+ V LD L DA V G V S+ + R+++ L+ +P +
Sbjct: 999 -----MELVELDNLKDAIV-------------GLPGVTGLSTEQRKRLTIAVELVANPSI 1040
Query: 281 LLLDEPTNHLD 291
+ +DEPT+ LD
Sbjct: 1041 IFMDEPTSGLD 1051
|
Length = 1470 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 538 DRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590
+R ++ LSGGE+ RLA ++ LL+LDEPT LD + L + + Y
Sbjct: 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR 842
Query: 591 --GTVITVSHD 599
VI VSHD
Sbjct: 843 KIPQVIIVSHD 853
|
Length = 880 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.002
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF---CKFMVKPSTLLVLDEPTNH 573
+ ++ D+ L + +L + +S G K LA + +LL++DEP N
Sbjct: 163 ELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENG 222
Query: 574 LDIPS--KEMLE--EAISEYKGTVITVSHDRYFVK 604
L P ++++E + +SE +I +H +
Sbjct: 223 LH-PKLLRKLVELLKELSEKGAQLIFTTHSPLLLD 256
|
Length = 256 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 254 DRL---VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDT--IEWLEGYLGKQDV 307
DRL S G Q R+ + + L P++LL+DEPT+ LD + T IE L L K+
Sbjct: 141 DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL-KKKY 199
Query: 308 PMVIISH 314
+VI++H
Sbjct: 200 TIVIVTH 206
|
Length = 253 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 254 DRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDV 307
DRL + S G Q R+ + + + +P++LLLDEPT+ LD IE L L K
Sbjct: 160 DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-KSKY 218
Query: 308 PMVIISH 314
+VI++H
Sbjct: 219 TIVIVTH 225
|
Length = 272 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 234 TLDAKVSKLMPELGFTADDGDRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
LD V K + + DRL S S G Q R+ + ++L P ++LLDEPT+ L
Sbjct: 120 VLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
Query: 291 DLDTIEWLEG--YLGKQDVPMVIISH 314
D + +E K D M++++
Sbjct: 180 DPISAGKIEETLLGLKDDYTMLLVTR 205
|
Length = 252 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL--GKQDVPMVIISHD 315
S S G Q R+ + ++L PD++LLDEPT+ LD + +E L + +++++H
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHS 206
|
Length = 252 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 43/190 (22%)
Query: 100 LENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
L N++ +Y + + +K+GE + L+G NG+GK+T ++ G +P SG +
Sbjct: 325 LRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI---- 380
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV-DDMDLMGRLL 217
L + V+ + E++ F SAV D L +LL
Sbjct: 381 ------LLDGK-PVTAEQ--PEDYRKLF------------------SAVFTDFHLFDQLL 413
Query: 218 DEFDLLQRKAQAVN--LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ V L+ L KL +DG S G + R++L L
Sbjct: 414 GP-EGKPANPALVEKWLERLKMA-HKL------ELEDGRISNLKLSKGQKKRLALLLALA 465
Query: 276 QDPDLLLLDE 285
++ D+LLLDE
Sbjct: 466 EERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 45/218 (20%), Positives = 81/218 (37%), Gaps = 38/218 (17%)
Query: 83 SNKQSNTGASSISSGV-KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR 141
S QS++ + V ++E + Y G L DV ++ + + +G +G GK+T LR
Sbjct: 5 SRSQSDSATINPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLR 64
Query: 142 IIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193
+ G ++ + +I + +V M F + E + A
Sbjct: 65 CFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFA 124
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
+ + L+ V+D + +E D L K + L
Sbjct: 125 PRANGYKGNLDELVEDSLRRAAIWEEVK-----------DKLKEKGTAL----------- 162
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+ + + + PD+LL+DEP + LD
Sbjct: 163 -------SGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
|
Length = 274 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLM-----PELGFTADDGDRLVASFSSGWQMRMSLG 271
LD F R A L T+ + +L PEL +A S G Q + L
Sbjct: 367 LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA---------IARLSGGNQQKAVLA 417
Query: 272 KILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIIS 313
K LL +P +L+LDEPT +D+ I L L +Q V +++IS
Sbjct: 418 KCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462
|
Length = 506 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 31/206 (15%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEF 170
VL+ + + GEKVG+VG GAGK++ + E G +I N+ KI F
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
++++ ++ + +G L ++D + DE A+
Sbjct: 1361 KITIIP----------QDPVLFSGSLRM----------NLDPFSQYSDE-----EVWWAL 1395
Query: 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
L L VS L +L +G + S G + + L + LL+ +L+LDE T +
Sbjct: 1396 ELAHLKTFVSALPDKLDHECAEGGE---NLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
Query: 291 DLDTIEWLEGYLGKQ--DVPMVIISH 314
DL+T ++ + Q D ++ I+H
Sbjct: 1453 DLETDNLIQSTIRTQFEDCTVLTIAH 1478
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV-IISHDRAFLDQLCTKI-VETEMGVS 334
+LL LDEP LD + +E L L + D + IISH ++ +I V+ + G S
Sbjct: 843 ELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVRIRVKKDGGRS 902
Query: 335 R 335
R
Sbjct: 903 R 903
|
Length = 908 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 62/219 (28%)
Query: 95 SSG-VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQL----RIIAGQE 147
SSG +K E++ Y+ VL +++E+ EKVG+VG GAGK++ L RI+
Sbjct: 1234 SSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV---- 1289
Query: 148 EPDSGNVIKAKSNM---------KIAFLSQEFEVSMSRTVREEF-MSAFKE--EMEIAGK 195
E + G ++ ++ K+ + + V S TVR F + F E + ++
Sbjct: 1290 ELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR--FNLDPFNEHNDADLWES 1347
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
LER D+++R + LDA+VS E G
Sbjct: 1348 LERAHLK------------------DVIRRNSLG-----LDAEVS----EAG-------- 1372
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+FS G + +SL + LL+ +L+LDE T +D+ T
Sbjct: 1373 --ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409
|
Length = 1622 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
SK ++ D + + + G +G+GKTT +R+IAG PD G +
Sbjct: 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI 54
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+S+ L+ +P LL LDEPT+ LD
Sbjct: 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ NL + A++G NG GKSTLLK + G+ + G +L
Sbjct: 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILF 57
|
Length = 491 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311
++ S G Q R+ + + L +P+++LLDEPT+ LD + +E L + ++ +VI
Sbjct: 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVI 200
Query: 312 ISHD 315
++H+
Sbjct: 201 VTHN 204
|
Length = 250 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491
F E ++L ++++ RG+ T ++G G GKSTLL+ ++ + G V E ++
Sbjct: 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-WAERSIA-- 724
Query: 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKV 541
Y Q +A ++ TV + E+ + + +AD+ + K
Sbjct: 725 YVPQ---QAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGLETEIGEKG 780
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
LSGG+KAR++ + + + +LD+P + LD
Sbjct: 781 VNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
Length = 1560 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 55/250 (22%)
Query: 415 PERGRSGRSVVTIKNL--EFGYEDRLL--FNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
P + +++ +K+L F D + N N ++ GE I+G +G GKS +
Sbjct: 3 PLAQQQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFAL 62
Query: 471 MGLEKPRG---GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED--------WR 519
MGL G G +L N E +L+K E ++ +D R
Sbjct: 63 MGLLAANGRIGGSATFNGREIL------NLPEK-ELNKLRAEQISMIFQDPMTSLNPYMR 115
Query: 520 IDDI--------KGLLGRCNFKAD--MLD-------RKVSLL-----SGGEKARLAFCKF 557
+ + KG+ F+ MLD RK + SGG + R+
Sbjct: 116 VGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMA 175
Query: 558 MVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEV 613
++ LL+ DEPT LD+ + +L E E+ +I ++HD V I ++V
Sbjct: 176 LLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV--- 232
Query: 614 KGSNLQDYAG 623
L YAG
Sbjct: 233 ----LVMYAG 238
|
Length = 330 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHL---DIPSKEMLE--EAISE 588
L + + LSGGE R+ K + K S TL +LDEPT L D+ K++LE + + +
Sbjct: 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDV--KKLLEVLQRLVD 220
Query: 589 YKGTVITVSHDRYFVK 604
TV+ + H+ +K
Sbjct: 221 KGNTVVVIEHNLDVIK 236
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 652 | |||
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-95 Score=806.03 Aligned_cols=523 Identities=42% Similarity=0.704 Sum_probs=449.7
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCC
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~ 175 (652)
.+|+++|++++|+++++|+++||+|.+|+++||||+||||||||||+|+|.+.|++|+|... ...+|+|++|++.....
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~-~~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP-KGLRVGYLSQEPPLDPE 80 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeec-CCceEEEeCCCCCcCCC
Confidence 46999999999999999999999999999999999999999999999999999999999987 34689999999998888
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccC
Q 006275 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (652)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (652)
.||.+.+..++.......+.++.+....... .......+......++.|..+.++..++..+|++.. ++
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~ 149 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADP---------DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DR 149 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cC
Confidence 8999999877765444444333333222111 112223334445556778999999999999999754 89
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCeEE
Q 006275 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~ 335 (652)
++.+||||||.||+||+||+.+||+|||||||||||.+++.||.++|+++..|+|+||||++|++.+|++|+.++.|++.
T Consensus 150 ~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 99999999999999999999999999999999999999999999999877669999999999999999999999999999
Q ss_pred EecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-ccchhHHHHHHHHHHHHhhhccccc-ccceEEe
Q 006275 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQEEEQIEKPFQ-RKQMKIR 413 (652)
Q Consensus 336 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~ 413 (652)
.|.|+|+.|..++......+...+.++++.+++...++++....++ +.++.++.+.+++++......++.. .....+.
T Consensus 230 ~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~ 309 (530)
T COG0488 230 PYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFR 309 (530)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceee
Confidence 9999999999999888877788888888999989999988765432 2466777777787774322233322 3334455
Q ss_pred cCCCC-CCCCcEEEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccc
Q 006275 414 FPERG-RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (652)
Q Consensus 414 ~p~~~-~~~~~~i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~ 491 (652)
++++. ..++.+++++|+++.|++ +.+++++||.|.+|+++||+||||+|||||||+|+|...|.+|+|.++. .+..+
T Consensus 310 f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-~v~ig 388 (530)
T COG0488 310 FPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-TVKIG 388 (530)
T ss_pred ccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-ceEEE
Confidence 56655 478899999999999966 6899999999999999999999999999999999999999999999864 47789
Q ss_pred eecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
||.|..... .++.|+.+++...........++..|++|+|..+...+++..||||||.||.||+.++.+|+||||||||
T Consensus 389 yf~Q~~~~l-~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT 467 (530)
T COG0488 389 YFDQHRDEL-DPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467 (530)
T ss_pred EEEehhhhc-CccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC
Confidence 999987443 3778999999887655446789999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcC
Q 006275 572 NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFS 633 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~ 633 (652)
|+||+++.+.|.++|.+|.+|||+||||.+|+..+|++++.+.+ ++..+.|+|++|.+...
T Consensus 468 NhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~~ 528 (530)
T COG0488 468 NHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQKK 528 (530)
T ss_pred ccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhhc
Confidence 99999999999999999999999999999999999999999998 88889999999987653
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-89 Score=785.17 Aligned_cols=516 Identities=31% Similarity=0.531 Sum_probs=410.1
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~ 176 (652)
+|+++|++++|+++++|+||||+|++|+++||+|||||||||||++|+|+++|++|+|.+++. ..++|++|++.. ...
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-~~i~~~~q~~~~-~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-WQLAWVNQETPA-LPQ 78 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEecCCCC-CCC
Confidence 388999999999999999999999999999999999999999999999999999999999863 479999997533 345
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
++.+++...+.........+.. .... ... ..+..+.......+.+..+.++.+++..+||..+..+++
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~----~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHD----ANER-NDG-------HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHH----Hhcc-CCH-------HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 7777664322110000000000 0000 000 000001111112334566778999999999965567899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCeEEE
Q 006275 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~ 336 (652)
+.+|||||||||+|||||+.+|+||||||||||||+.++.||.++|++.+.|||+||||++++..+||+|++|++|++..
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999988
Q ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cccchhHHHHHHHHHHHHhhhcccccccceEEecC
Q 006275 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (652)
Q Consensus 337 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p 415 (652)
|.|+|+.|...+......+...+..+++.+.+..+++.+....+ ....+.+..+.++++.. ..++.......+.+|
T Consensus 227 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~---~~~~~~~~~~~~~~~ 303 (638)
T PRK10636 227 YTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMEL---IAPAHVDNPFHFSFR 303 (638)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhc---ccccccCCceeEecC
Confidence 99999999987776666667778888888887777777643311 11222334444454432 111111223445555
Q ss_pred CCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecc
Q 006275 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (652)
Q Consensus 416 ~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~ 495 (652)
++..+++.+|+++||++.|+++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. +..+|++|
T Consensus 304 ~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-~~igy~~Q 382 (638)
T PRK10636 304 APESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-IKLGYFAQ 382 (638)
T ss_pred CCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-EEEEEecC
Confidence 55556778999999999999889999999999999999999999999999999999999999999999742 34678887
Q ss_pred cccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q 006275 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD 575 (652)
.+...+.+..++.+++...........+.++|+.+++.....++++.+|||||||||+|||+|+.+|+||||||||||||
T Consensus 383 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 383 HQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462 (638)
T ss_pred cchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 64333455667888764322222345678899999996556799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 576 IPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 576 ~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+.++..+.++|.++++|||+||||++++..+||+|++|++|++..+.|++++|.+
T Consensus 463 ~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 463 LDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999988999999999999999999999999999888999999844
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-88 Score=779.75 Aligned_cols=521 Identities=33% Similarity=0.573 Sum_probs=407.2
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~ 176 (652)
+|+++|++++|+++++|+||||+|++|+++||+|||||||||||++|+|+++|++|+|.+++ ...++|++|.+......
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~-~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ-DLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC-CCEEEEeccCCCCCCCC
Confidence 69999999999988899999999999999999999999999999999999999999999985 45689999986543456
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
++.+++...+............+...+.. ....+ .+..+..+.......+.+....++.++++.+|+. .+++
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~ 153 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVET-DPSEK----NLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAA 153 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhcc-CchHH----HHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCc
Confidence 88887653322111000011111110000 00000 1111111111111223445677889999999995 3788
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCeEEE
Q 006275 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~ 336 (652)
+.+|||||||||+|||||+.+|+||||||||||||+.++.||.++|++.+.|||+||||++++..+||+|++|++|++..
T Consensus 154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998887899999999999999999999999999988
Q ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhhcccccccceEEecCC
Q 006275 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE 416 (652)
Q Consensus 337 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~ 416 (652)
+.|+|++|..++......+...+..+++.+++...++++ ...+...+..+..+.+++++... ..+........+.+|+
T Consensus 234 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 311 (635)
T PRK11147 234 YPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ-GIKARRTRNEGRVRALKALRRER-SERREVMGTAKMQVEE 311 (635)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHhhhhh-ccccccCCceeEEeCC
Confidence 899999999887665555555666666666666666655 11111111122333344433111 1111112233455555
Q ss_pred CCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceeccc
Q 006275 417 RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496 (652)
Q Consensus 417 ~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 496 (652)
...+++.+|+++||++.|+++.+|+++||+|++|+++||+|||||||||||++|+|+++|++|+|.+ |.++..+|+.|.
T Consensus 312 ~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~ 390 (635)
T PRK11147 312 ASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQH 390 (635)
T ss_pred CCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCc
Confidence 5556778999999999999889999999999999999999999999999999999999999999999 555667788775
Q ss_pred ccccCCCCCCHHHHHHHhhhhc----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 497 QAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
. ..+++.+|+.+++....... ....+.++|+.+++..+..++++.+|||||||||+|||||+.+|+|||||||||
T Consensus 391 ~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~ 469 (635)
T PRK11147 391 R-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN 469 (635)
T ss_pred c-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 4 34677899999998643211 134578899999996566799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEe-CCEEEeecCChhhHhh
Q 006275 573 HLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK-GSNLQDYAGDYNVCFT 630 (652)
Q Consensus 573 ~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~-~g~i~~~~g~~~~~~~ 630 (652)
|||+.++..+.++|+++++|||+||||++++..+||++++|+ +|++..|.|+|++|.+
T Consensus 470 ~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 470 DLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999999998899999999999999999999998 8999999999999954
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-87 Score=755.88 Aligned_cols=526 Identities=32% Similarity=0.517 Sum_probs=401.2
Q ss_pred CceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC
Q 006275 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (652)
Q Consensus 96 ~~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~ 174 (652)
++|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ...||||+|++.+++
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEecCCCCCC
Confidence 4799999999998 78899999999999999999999999999999999999999999999874 357999999998878
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (652)
..||.||+...+.................. ...+.+..+++....+.......+.++...++.++++.+|+. ..+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~ 158 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYA---EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP--PWD 158 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhc---cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC--ccc
Confidence 889999986432110000000000000000 000001112222223333334445566678889999999995 368
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCeE
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~ 334 (652)
+++.+|||||||||+|||||+.+|++|||||||||||+.++.++.++|++.+.|||+||||++++..+||+|++|++|++
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 89999999999999999999999999999999999999999999999988778999999999999999999999999998
Q ss_pred EEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhhcccccccceEEec
Q 006275 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRF 414 (652)
Q Consensus 335 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 414 (652)
..+.|+|++|...+......+...++++++.+.+..+.+++.... .........+.+++.... ..+..+....+.+
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 314 (556)
T PRK11819 239 IPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKA-RQAKSKARLARYEELLSE---EYQKRNETNEIFI 314 (556)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhcc---cccccCCCceeec
Confidence 779999999987665444444444555555554444443321000 000011111122222110 1111111112223
Q ss_pred CCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceec
Q 006275 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE 494 (652)
Q Consensus 415 p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~ 494 (652)
|+.....+++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++..+|++
T Consensus 315 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~ 393 (556)
T PRK11819 315 PPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVD 393 (556)
T ss_pred CCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEe
Confidence 33333356789999999999988999999999999999999999999999999999999999999999954 44567887
Q ss_pred ccccccCCCCCCHHHHHHHhhhh----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 495 QNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
|+. ..+++..|+.+++...... .....+..+++.+++.....++++.+|||||||||+|||||+.+|++||||||
T Consensus 394 q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 472 (556)
T PRK11819 394 QSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472 (556)
T ss_pred Cch-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 753 2456778999999864321 11234567899999954457899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeC-CEEEeecCChhhHhhhcC
Q 006275 571 TNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG-SNLQDYAGDYNVCFTSFS 633 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~-g~i~~~~g~~~~~~~~~~ 633 (652)
|+|||+.++..+.++|.++.+|||+||||++++..+||+|++|++ |++..+.|++++|.+..+
T Consensus 473 t~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~~ 536 (556)
T PRK11819 473 TNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDKK 536 (556)
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHHH
Confidence 999999999999999999878999999999999999999999985 888888999998876643
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-86 Score=748.30 Aligned_cols=525 Identities=32% Similarity=0.555 Sum_probs=393.4
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~ 176 (652)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+|+|++|++.++...
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-ERLGKLRQDQFAFEEF 79 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEeccCCcCCCC
Confidence 389999999999888999999999999999999999999999999999999999999999863 4799999998877888
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
||+||+..............+.+.............+ ............+..+.++.++++.+|+.....+++
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 152 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKV-------ADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL 152 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHH-------HHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence 9999986432110000000000000000000000000 001111112233344567889999999964344678
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCeEEE
Q 006275 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~ 336 (652)
+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++.++|||+||||++++.++||+|++|++|++..
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~ 232 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRV 232 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEE
Confidence 89999999999999999999999999999999999999999999998889999999999999999999999999999867
Q ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhh-hcccccccceEEecC
Q 006275 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQ-IEKPFQRKQMKIRFP 415 (652)
Q Consensus 337 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~p 415 (652)
+.|+|+++..++.........++..+++++.+....+.+.... +..+..+.....++..... ...+.......+.++
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (530)
T PRK15064 233 YPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSAN--ASKAKQATSRAKQIDKIKLEEVKPSSRQNPFIRFE 310 (530)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhhHHHHHHHHHHhhccccccCCccccCceeeCC
Confidence 8999999986555433333334444444444444443332111 1111111111111111000 000000000111222
Q ss_pred CCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecc
Q 006275 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (652)
Q Consensus 416 ~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~ 495 (652)
.....++.+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. ..+|++|
T Consensus 311 ~~~~~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~-~i~~~~q 389 (530)
T PRK15064 311 QDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA-NIGYYAQ 389 (530)
T ss_pred CCCCCCCceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCce-EEEEEcc
Confidence 222234568999999999998889999999999999999999999999999999999999999999998743 3567777
Q ss_pred cccccCCCCCCHHHHHHHhhh-hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCC
Q 006275 496 NQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~L 574 (652)
.....+....|+.+++..... ......+.++|+.+++..+..++++.+|||||||||+|||||+.+|+||||||||++|
T Consensus 390 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~L 469 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHM 469 (530)
T ss_pred cccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 543334556899999864321 1224467889999999545689999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 575 D~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
|+.++..+.+.|+++++|||+||||++++..+|||+++|++|+++.+.|+++++++..
T Consensus 470 D~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 470 DMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 9999999999999998899999999999999999999999999987789998886653
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-85 Score=745.14 Aligned_cols=523 Identities=33% Similarity=0.533 Sum_probs=394.9
Q ss_pred ceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCC
Q 006275 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (652)
Q Consensus 97 ~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~ 175 (652)
+|+++|++++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ ...|||++|++.++++
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~~~ 82 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-GIKVGYLPQEPQLDPT 82 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEeccCCCCCC
Confidence 699999999998 67899999999999999999999999999999999999999999999874 3579999999988788
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccC
Q 006275 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (652)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (652)
.||.||+...+............+...+... ..+ ....+.....+....+.+..+.+..++.++++.+|+. ..++
T Consensus 83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~ 157 (552)
T TIGR03719 83 KTVRENVEEGVAEIKDALDRFNEISAKFAEP--DAD-MDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP--PWDA 157 (552)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccC--chh-hHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC--cccC
Confidence 9999998643211000000000000000000 000 0001111122223333445555667888999999995 3588
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCeEE
Q 006275 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~ 335 (652)
++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++.+.|||+||||++++..+||+|++|++|++.
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 89999999999999999999999999999999999999999999999887789999999999999999999999999987
Q ss_pred EecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhhcccccccceEEecC
Q 006275 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (652)
Q Consensus 336 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p 415 (652)
.+.|+|++|...+....+.+...+.+.++++.+....+.+.... .........+.++++.+. ..+.......+.++
T Consensus 238 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 313 (552)
T TIGR03719 238 PWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKA-RQAKSKARLARYEELLSQ---EFQKRNETAEIYIP 313 (552)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhhh---cccccCCCceeecC
Confidence 78999999987655444434344444444444333333221000 000001111222222111 11111111122223
Q ss_pred CCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecc
Q 006275 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (652)
Q Consensus 416 ~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~ 495 (652)
.....++++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++..+|++|
T Consensus 314 ~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~q 392 (552)
T TIGR03719 314 PGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQ 392 (552)
T ss_pred CCCCCCCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEeC
Confidence 2223356789999999999988999999999999999999999999999999999999999999999954 445678877
Q ss_pred cccccCCCCCCHHHHHHHhhhh----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 496 NQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
+. ..+++..|+.+++...... .....+.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||
T Consensus 393 ~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 393 SR-DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred Cc-cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 53 2356778999999875321 112345678999999544578999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeC-CEEEeecCChhhHhhh
Q 006275 572 NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG-SNLQDYAGDYNVCFTS 631 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~-g~i~~~~g~~~~~~~~ 631 (652)
+|||+.+++.+.++|+++.+|||+||||++++..+||+|++|++ |++..+.|++++|.+.
T Consensus 472 ~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 472 NDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 99999999999999999888999999999999999999999986 6888788999887644
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-86 Score=698.90 Aligned_cols=523 Identities=40% Similarity=0.659 Sum_probs=461.1
Q ss_pred CCCCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCcc
Q 006275 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (652)
Q Consensus 93 ~~~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~ 172 (652)
.....+.++|++++|.+..+++|+.|++.+|+.+||+|+|||||||+|++|.|-..|..- +..+..+.++...
T Consensus 71 ~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~-------~~d~y~ls~e~~p 143 (614)
T KOG0927|consen 71 PISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE-------HIDFYLLSREIEP 143 (614)
T ss_pred cccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc-------ccchhhhcccCCC
Confidence 445679999999999999999999999999999999999999999999999999888542 2345666676544
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccc
Q 006275 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (652)
Q Consensus 173 ~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (652)
....+|..-++....+........+.+...++. ...+..+.++++.+.++....+.++.++|..+|+..+.
T Consensus 144 s~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~---------~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 144 SEKQAVQAVVMETDHERKRLEYLAEDLAQACDD---------KEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc---------hhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 333455555545555444444444555444332 12344556677888899999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCC-eEEEEecCHHHHHhhcCeEEEEcC
Q 006275 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV-PMVIISHDRAFLDQLCTKIVETEM 331 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~-tvIivsHd~~~l~~~~d~ii~l~~ 331 (652)
.++.+.+|||||++|++|||||..+|++|||||||||||++++.||.++|.++.. ++|+++|+.++++.+|++|+.+++
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecc
Confidence 9999999999999999999999999999999999999999999999999999887 899999999999999999999999
Q ss_pred CeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--ccccchhHHHHHHHHHHHHhhhcccccccc
Q 006275 332 GVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG--ANSGRASSAEKKLERLQEEEQIEKPFQRKQ 409 (652)
Q Consensus 332 G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 409 (652)
++.+.|.|||++|+..+.++...+..+|+|+++++.....++.+...+ ...+++.+.++.+.++.+....+++...+.
T Consensus 295 kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~ 374 (614)
T KOG0927|consen 295 KKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKV 374 (614)
T ss_pred cceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCce
Confidence 999999999999999999999999999999999999999999998765 344677888888898888877888888888
Q ss_pred eEEecCCCCCCCCcEEEEEeeeeEeCCe-eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 410 MKIRFPERGRSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 410 ~~~~~p~~~~~~~~~i~~~~v~~~y~~~-~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
..+.+|..+..+.+++.++||+|.|.++ .++++++|-|..++++++|||||+|||||||++.|.+.|..|.|...-...
T Consensus 375 l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~ 454 (614)
T KOG0927|consen 375 LSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK 454 (614)
T ss_pred EEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc
Confidence 8999998888888999999999999876 589999999999999999999999999999999999999999998765544
Q ss_pred ccceecccccccCCCCCCHHHHHHHhhhh-ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEE
Q 006275 489 LPNYFEQNQAEALDLDKTVLETVAEAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (652)
Q Consensus 489 ~~~~~~~~~~~~~~~~~tv~e~~~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlL 567 (652)
.+ ++.|+....++.+.++.+++...... +..++++.+|++||+..+..+.++.+||+|||.||++|++++.+|.+|||
T Consensus 455 ~~-~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlL 533 (614)
T KOG0927|consen 455 LP-RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLL 533 (614)
T ss_pred ch-hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEe
Confidence 33 67888888888999999999987764 77888999999999988889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 568 DEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 568 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
||||||||+++...+.++|+++.++||+||||..+|.+++++|++..+|.+..++|++.+|.+..
T Consensus 534 DEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l 598 (614)
T KOG0927|consen 534 DEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHL 598 (614)
T ss_pred cCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999886543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-82 Score=730.57 Aligned_cols=520 Identities=29% Similarity=0.472 Sum_probs=392.6
Q ss_pred CCCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccC
Q 006275 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (652)
Q Consensus 94 ~~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~ 173 (652)
...+|+++|++|+|+++++|+|+||+|++|+++||||+|||||||||++|+|... .| + ....+|+|++|++. .
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g---~-p~~g~I~~~~Q~~~-g 246 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG---I-PKNCQILHVEQEVV-G 246 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC---C-CCCCEEEEEeccCC-C
Confidence 3457999999999998889999999999999999999999999999999999741 13 1 12356889999853 2
Q ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHH-----h----------hhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 174 MSRTVREEFMSAFKEEMEIAGKLERVQKAL-----E----------SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 174 ~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
...|+.+.+..............-.+.... . ...... ....+....+.......+.+..+.+
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDK---DAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccch---HHHHHHHHHHHHHHHhcCcchHHHH
Confidence 456777665422111111000000000000 0 000000 1122333344445556677888999
Q ss_pred HHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHH
Q 006275 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAF 318 (652)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~ 318 (652)
+.+++..+||.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.||.++|++.+.|||+||||+++
T Consensus 324 ~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~ 403 (718)
T PLN03073 324 AASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREF 403 (718)
T ss_pred HHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 99999999997667789999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-ccchhHHHHHHHHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQE 397 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~l~~ 397 (652)
+..+||+|++|++|++..|.|+|+.|...+......+...++.++++.++.++.+++....+. +..+....+.++++..
T Consensus 404 l~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~ 483 (718)
T PLN03073 404 LNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGH 483 (718)
T ss_pred HHHhCCEEEEEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhh
Confidence 999999999999999988999999998877666666666777777777666666655432111 1111122233333322
Q ss_pred HhhhcccccccceEEecCCC-CCCCCcEEEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 398 EEQIEKPFQRKQMKIRFPER-GRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 398 ~~~~~~~~~~~~~~~~~p~~-~~~~~~~i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
.. ++.......+.+|.+ ..++.++|+++||++.|++ +.+|+++||+|++|++++|+|||||||||||++|+|+++
T Consensus 484 ~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~ 560 (718)
T PLN03073 484 VD---AVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ 560 (718)
T ss_pred hh---ccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 11 111111122333332 2344578999999999964 569999999999999999999999999999999999999
Q ss_pred CCeeEEEECceecccceecccccccCCCCCCHHHHHHHh----hhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHH
Q 006275 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA----AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (652)
Q Consensus 476 p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~----~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqr 551 (652)
|++|+|.+++. ...+|++|... ...++.++.... ........+..+|+.+++..+..++++.+||||||||
T Consensus 561 p~~G~I~~~~~-~~igyv~Q~~~----~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqR 635 (718)
T PLN03073 561 PSSGTVFRSAK-VRMAVFSQHHV----DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 635 (718)
T ss_pred CCCceEEECCc-eeEEEEecccc----ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHH
Confidence 99999998763 34567777532 222333332211 1122345688899999996556789999999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 552 v~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|+|||||+.+|++|||||||+|||+.++..+.+.|.++.+|||+||||++++..+|||+++|++|++..+.|++++|.+.
T Consensus 636 vaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 636 VAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 99999999999999999999999999999999999988789999999999999999999999999998788998887543
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-82 Score=690.04 Aligned_cols=454 Identities=23% Similarity=0.378 Sum_probs=365.9
Q ss_pred CceEEEeEEEEeCCe----eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCC----CcEEEECCCC-------
Q 006275 96 SGVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD----SGNVIKAKSN------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~----~G~i~~~~~~------- 160 (652)
+.|+++|+++.|... ++++||||+|.+||++||||.+||||||+.++|.|++++. +|+|.++|.+
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 379999999999532 5999999999999999999999999999999999999987 8999998752
Q ss_pred -------ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCC
Q 006275 161 -------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (652)
Q Consensus 161 -------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (652)
..|+|++|+|. +.+..||.+.+...+.- .....
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~--------------------------------------h~~~~ 125 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL--------------------------------------HGKGS 125 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHH--------------------------------------hcccc
Confidence 36999999984 33445776665432110 00111
Q ss_pred hhcHHHHHHHHhhhcCCCcccc-cCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCC
Q 006275 232 LDTLDAKVSKLMPELGFTADDG-DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (652)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~-~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g 306 (652)
..+..+++.++|+.+|++++.. ++++++|||||||||.||+||+.+|++||+||||++||+.++.++.++|+ +.|
T Consensus 126 ~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g 205 (539)
T COG1123 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205 (539)
T ss_pred HHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC
Confidence 3345677889999999986555 46999999999999999999999999999999999999999999988874 479
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchh
Q 006275 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (652)
Q Consensus 307 ~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (652)
.++|+||||++.+.++||||++|.+|.+ +..|..++.+..... .| ++.+++..
T Consensus 206 ~a~l~ITHDl~Vva~~aDrv~Vm~~G~i-VE~G~~~~i~~~p~h-------pY---------T~~Ll~a~---------- 258 (539)
T COG1123 206 MAVLFITHDLGVVAELADRVVVMYKGEI-VETGPTEEILSNPQH-------PY---------TRGLLAAV---------- 258 (539)
T ss_pred cEEEEEcCCHHHHHHhcCeEEEEECCEE-EEecCHHHHHhccCC-------cc---------cHHHHhhC----------
Confidence 9999999999999999999999999998 577876665432110 00 01111110
Q ss_pred HHHHHHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCC-----------eeeeeceEEEEEcCeEEEE
Q 006275 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEKTAI 455 (652)
Q Consensus 387 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-----------~~vl~~isl~i~~Ge~~~i 455 (652)
+.....+..... +.......++++++|+++.|.. ..+++||||+|++||++||
T Consensus 259 ---------------p~~~~~~~~~~~-~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lgl 322 (539)
T COG1123 259 ---------------PRLGDEKIIRLP-RRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGL 322 (539)
T ss_pred ---------------CCcccccccccc-cccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEE
Confidence 000000000000 0001126788999999999973 2579999999999999999
Q ss_pred EcCCCCcHHHHHHHHhCCCCCCeeEEEECceec------------ccceecccccccCCCCCCHHHHHHHhhhh------
Q 006275 456 IGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNYFEQNQAEALDLDKTVLETVAEAAED------ 517 (652)
Q Consensus 456 ~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~------------~~~~~~~~~~~~~~~~~tv~e~~~~~~~~------ 517 (652)
||+||||||||.|+|+|+++|++|+|.++|.++ ....++|++...++|.+||.+.+......
T Consensus 323 VGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~ 402 (539)
T COG1123 323 VGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSG 402 (539)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccch
Confidence 999999999999999999999999999999762 12356788888899999999999875431
Q ss_pred -ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCce
Q 006275 518 -WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGT 592 (652)
Q Consensus 518 -~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~t 592 (652)
...+.+.++|+.+++..+.++++|++||||||||+||||||+.+|++||+|||||.||+..+..+.++|.+ ++.|
T Consensus 403 ~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t 482 (539)
T COG1123 403 AERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLT 482 (539)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCE
Confidence 12235788999999998889999999999999999999999999999999999999999999999998865 4679
Q ss_pred EEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 593 VITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 593 vi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+|+||||+.+++.+||||++|++|+|++. |+.+..++.
T Consensus 483 ~lfISHDl~vV~~i~drv~vm~~G~iVE~-G~~~~v~~~ 520 (539)
T COG1123 483 YLFISHDLAVVRYIADRVAVMYDGRIVEE-GPTEKVFEN 520 (539)
T ss_pred EEEEeCCHHHHHhhCceEEEEECCeEEEe-CCHHHHhcC
Confidence 99999999999999999999999999964 777766544
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-81 Score=719.51 Aligned_cols=471 Identities=18% Similarity=0.307 Sum_probs=359.3
Q ss_pred CCceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC-----------
Q 006275 95 SSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----------- 159 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~----------- 159 (652)
+++|+++|++++|+. .++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 457999999999962 46999999999999999999999999999999999999999999987652
Q ss_pred -------------CceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHH
Q 006275 160 -------------NMKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224 (652)
Q Consensus 160 -------------~~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (652)
...|||++|+| .+.+..||.||+...... .
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~---------------~-------------------- 134 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRL---------------H-------------------- 134 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHH---------------h--------------------
Confidence 12599999998 466778999998632110 0
Q ss_pred HHHHhCChhcHHHHHHHHhhhcCCCc--ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 006275 225 RKAQAVNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL 302 (652)
Q Consensus 225 ~~~~~~~~~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L 302 (652)
..++..+..+++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|
T Consensus 135 ---~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll 211 (623)
T PRK10261 135 ---QGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLI 211 (623)
T ss_pred ---cCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHH
Confidence 00111223456778899999963 3578899999999999999999999999999999999999999999888876
Q ss_pred c----cCCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006275 303 G----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGA 378 (652)
Q Consensus 303 ~----~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (652)
+ +.|+|||+||||++++.++||||++|++|+++ ..|++.++...... .+. ..++.....
T Consensus 212 ~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~-~~g~~~~~~~~~~~-------~~~---------~~l~~~~~~ 274 (623)
T PRK10261 212 KVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV-ETGSVEQIFHAPQH-------PYT---------RALLAAVPQ 274 (623)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec-ccCCHHHhhcCCCC-------hhh---------hhhhhccCc
Confidence 4 24899999999999999999999999999985 67887665421100 000 000100000
Q ss_pred C-ccccchhHHHHHHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCC-----------eeeeeceEEE
Q 006275 379 G-ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLT 446 (652)
Q Consensus 379 ~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-----------~~vl~~isl~ 446 (652)
. ...+.... ...+... ...+.... ...++.....+.++|+++||++.|+. +.+|+++||+
T Consensus 275 ~~~~~~~~~~--~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~ 346 (623)
T PRK10261 275 LGAMKGLDYP--RRFPLIS----LEHPAKQE--PPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFD 346 (623)
T ss_pred ccccccccCC--ccccccc----cccccccC--cccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeE
Confidence 0 00000000 0000000 00000000 00001111124568999999999961 4699999999
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------cceecccccccCCCCCCHHHHHHH
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------PNYFEQNQAEALDLDKTVLETVAE 513 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------~~~~~~~~~~~~~~~~tv~e~~~~ 513 (652)
|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|+....+++.+|+.+++..
T Consensus 347 i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~ 426 (623)
T PRK10261 347 LWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIME 426 (623)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999997652 245566543356778999999876
Q ss_pred hhh--h-----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 006275 514 AAE--D-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (652)
Q Consensus 514 ~~~--~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 586 (652)
... . .....+.++|+.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll 506 (623)
T PRK10261 427 PLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLL 506 (623)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 421 1 112457789999999645679999999999999999999999999999999999999999999999999
Q ss_pred Hhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 587 SEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 587 ~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+++ +.|||+||||++++..+||||++|++|++++ .|++++++
T Consensus 507 ~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~-~g~~~~i~ 552 (623)
T PRK10261 507 LDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE-IGPRRAVF 552 (623)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 653 5699999999999999999999999999974 57776654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-82 Score=709.98 Aligned_cols=442 Identities=22% Similarity=0.298 Sum_probs=351.7
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCCC-----------ce
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MK 162 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p--~~G~i~~~~~~-----------~~ 162 (652)
++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+ ..
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 369999999999988899999999999999999999999999999999999996 89999998742 34
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
++|++|++.+++..|++||+....... .. ...+......++.++
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~---------------~~---------------------~~~~~~~~~~~~~~~ 127 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEIT---------------PG---------------------GIMDYDAMYLRAQKL 127 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhccccc---------------cc---------------------CCcCHHHHHHHHHHH
Confidence 999999998878899999985321000 00 000011223456778
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (652)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|+ +.|+|||+||||++++
T Consensus 128 l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~ 206 (506)
T PRK13549 128 LAQLKLD-INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV 206 (506)
T ss_pred HHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 8999996 56789999999999999999999999999999999999999999999988774 3588999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHh
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~ 399 (652)
..+||+|++|++|++. +.|+.+++... +.+..+.+. .. .+
T Consensus 207 ~~~~d~v~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~~-~~----------~~----- 246 (506)
T PRK13549 207 KAISDTICVIRDGRHI-GTRPAAGMTED-----------------------DIITMMVGR-EL----------TA----- 246 (506)
T ss_pred HHhcCEEEEEECCEEe-eecccccCCHH-----------------------HHHHHhhCc-Cc----------cc-----
Confidence 9999999999999974 55654432110 000000000 00 00
Q ss_pred hhcccccccceEEecCCCCCCCCcEEEEEeeeeEeC---CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-
Q 006275 400 QIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK- 475 (652)
Q Consensus 400 ~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~---~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~- 475 (652)
..+. ++ ...++++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++
T Consensus 247 --~~~~---------~~-~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 314 (506)
T PRK13549 247 --LYPR---------EP-HTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG 314 (506)
T ss_pred --cccc---------cc-cCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 0000 00 112356899999999994 4579999999999999999999999999999999999998
Q ss_pred CCeeEEEECceecc-----------cceeccccc-ccCCCCCCHHHHHHHhhh---------hc--cHHHHHHHHhhCCC
Q 006275 476 PRGGEVLLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAAE---------DW--RIDDIKGLLGRCNF 532 (652)
Q Consensus 476 p~~G~i~~~g~~~~-----------~~~~~~~~~-~~~~~~~tv~e~~~~~~~---------~~--~~~~~~~~L~~~~l 532 (652)
|++|+|.++|.++. .+|+.|... ..+++..|+.+|+..... .. ....+.++++.+++
T Consensus 315 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 394 (506)
T PRK13549 315 RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV 394 (506)
T ss_pred CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCc
Confidence 59999999987652 245555432 235667899999975320 00 12357789999999
Q ss_pred ChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccE
Q 006275 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNR 609 (652)
Q Consensus 533 ~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~dr 609 (652)
.....++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++|+++ +.|||+||||++++.++|||
T Consensus 395 ~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 395 KTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred cCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 534678999999999999999999999999999999999999999999999998754 56999999999999999999
Q ss_pred EEEEeCCEEEeecCChhh
Q 006275 610 VVEVKGSNLQDYAGDYNV 627 (652)
Q Consensus 610 vi~l~~g~i~~~~g~~~~ 627 (652)
+++|++|++. ..|+.++
T Consensus 475 v~~l~~G~i~-~~~~~~~ 491 (506)
T PRK13549 475 VLVMHEGKLK-GDLINHN 491 (506)
T ss_pred EEEEECCEEE-EEecccc
Confidence 9999999987 4455554
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-81 Score=703.06 Aligned_cols=442 Identities=20% Similarity=0.345 Sum_probs=351.0
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~ 164 (652)
++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 46999999999998889999999999999999999999999999999999999999999998732 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+++..||+||+........ . +... ...+......++.++++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~-------~----~~~~---------------------~~~~~~~~~~~~~~~l~ 131 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTK-------K----VCGV---------------------NIIDWREMRVRAAMMLL 131 (510)
T ss_pred EEeecccccCCCcHHHHhhhcccccc-------c----cccc---------------------cccCHHHHHHHHHHHHH
Confidence 99999888788899999853210000 0 0000 00011123446678899
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (652)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|+ +.|+|||+||||++++..
T Consensus 132 ~~gl~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~ 210 (510)
T PRK09700 132 RVGLK-VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRR 210 (510)
T ss_pred HcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 56789999999999999999999999999999999999999999999988774 358999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhh
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 401 (652)
+||+|+++++|++ .+.|+++++.... .++.+.+.... .+ .
T Consensus 211 ~~d~v~~l~~G~i-~~~g~~~~~~~~~-----------------------~~~~~~~~~~~----------~~------~ 250 (510)
T PRK09700 211 ICDRYTVMKDGSS-VCSGMVSDVSNDD-----------------------IVRLMVGRELQ----------NR------F 250 (510)
T ss_pred hCCEEEEEECCEE-eeecchhhCCHHH-----------------------HHHHhcCCCcc----------cc------c
Confidence 9999999999998 4677766543210 01111000000 00 0
Q ss_pred cccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
.... . ++....++++|+++|+++.|+ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 251 ~~~~--~------~~~~~~~~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 320 (510)
T PRK09700 251 NAMK--E------NVSNLAHETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI 320 (510)
T ss_pred cccc--c------ccccCCCCcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence 0000 0 000112345899999999874 48999999999999999999999999999999999999999999
Q ss_pred EECceecc-----------cceeccccc-ccCCCCCCHHHHHHHhhh--------------h-ccHHHHHHHHhhCCCCh
Q 006275 482 LLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAAE--------------D-WRIDDIKGLLGRCNFKA 534 (652)
Q Consensus 482 ~~~g~~~~-----------~~~~~~~~~-~~~~~~~tv~e~~~~~~~--------------~-~~~~~~~~~L~~~~l~~ 534 (652)
.++|.++. .+|++|... ..+++.+|+.+|+..... . .....+.++++.+++..
T Consensus 321 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 400 (510)
T PRK09700 321 RLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400 (510)
T ss_pred EECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC
Confidence 99997642 245555421 346678899999875321 0 01134678899999953
Q ss_pred hhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEE
Q 006275 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVV 611 (652)
Q Consensus 535 ~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi 611 (652)
+..++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|+++ +.|||+||||++++..+|||++
T Consensus 401 ~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~ 480 (510)
T PRK09700 401 HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIA 480 (510)
T ss_pred CCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEE
Confidence 5679999999999999999999999999999999999999999999999999764 5699999999999999999999
Q ss_pred EEeCCEEEe
Q 006275 612 EVKGSNLQD 620 (652)
Q Consensus 612 ~l~~g~i~~ 620 (652)
+|++|++..
T Consensus 481 ~l~~G~i~~ 489 (510)
T PRK09700 481 VFCEGRLTQ 489 (510)
T ss_pred EEECCEEEE
Confidence 999999874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-80 Score=699.84 Aligned_cols=443 Identities=25% Similarity=0.351 Sum_probs=350.8
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceE
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i 163 (652)
.++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..+
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 346999999999998889999999999999999999999999999999999999999999998742 249
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
||++|++.+++..||.||+...... ....++++.+++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~-------------------------------------------~~~~~~~~~~~l 125 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPK-------------------------------------------RQASMQKMKQLL 125 (510)
T ss_pred EEEeccCccCCCCcHHHHhhccccc-------------------------------------------chHHHHHHHHHH
Confidence 9999999888889999998532100 001234456778
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (652)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|+ +.|+|||+||||++++.
T Consensus 126 ~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~ 204 (510)
T PRK15439 126 AALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIR 204 (510)
T ss_pred HHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 888996 56789999999999999999999999999999999999999999999998874 35899999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhh
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQ 400 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~ 400 (652)
.+||+|++|++|++. +.|+++++..... ++.+........ +....
T Consensus 205 ~~~d~i~~l~~G~i~-~~g~~~~~~~~~~-----------------------~~~~~~~~~~~~-------~~~~~---- 249 (510)
T PRK15439 205 QLADRISVMRDGTIA-LSGKTADLSTDDI-----------------------IQAITPAAREKS-------LSASQ---- 249 (510)
T ss_pred HhCCEEEEEECCEEE-EecChHHcCHHHH-----------------------HHHHhCcccccc-------ccccc----
Confidence 999999999999984 6788776543210 000000000000 00000
Q ss_pred hcccccccceEEec-CCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee
Q 006275 401 IEKPFQRKQMKIRF-PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (652)
Q Consensus 401 ~~~~~~~~~~~~~~-p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (652)
.. ...++. +.....++.+|+++|+++ .+|+++||+|++||++||+||||||||||+++|+|+++|++|
T Consensus 250 --~~----~~~~~~~~~~~~~~~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G 318 (510)
T PRK15439 250 --KL----WLELPGNRRQQAAGAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGG 318 (510)
T ss_pred --cc----cccccccccccCCCCceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 00 000000 001112456899999984 269999999999999999999999999999999999999999
Q ss_pred EEEECceecc-----------cceeccccc-ccCCCCCCHHHHHHHhh----h----hc-cHHHHHHHHhhCCCChhhhc
Q 006275 480 EVLLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAA----E----DW-RIDDIKGLLGRCNFKADMLD 538 (652)
Q Consensus 480 ~i~~~g~~~~-----------~~~~~~~~~-~~~~~~~tv~e~~~~~~----~----~~-~~~~~~~~L~~~~l~~~~~~ 538 (652)
+|.++|.++. .+|++|... ..+++..|+.+|+.... . .. ....+.++++.+++.....+
T Consensus 319 ~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 398 (510)
T PRK15439 319 RIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAE 398 (510)
T ss_pred EEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCcc
Confidence 9999997652 235555421 24666789999985320 0 01 12346788999999534679
Q ss_pred cCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeC
Q 006275 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKG 615 (652)
Q Consensus 539 ~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~ 615 (652)
+++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++|+++ +.|||+||||++++.++|||+++|++
T Consensus 399 ~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~ 478 (510)
T PRK15439 399 QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQ 478 (510)
T ss_pred CccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999998864 56999999999999999999999999
Q ss_pred CEEEeecCChhhH
Q 006275 616 SNLQDYAGDYNVC 628 (652)
Q Consensus 616 g~i~~~~g~~~~~ 628 (652)
|++.. .|..+++
T Consensus 479 G~i~~-~~~~~~~ 490 (510)
T PRK15439 479 GEISG-ALTGAAI 490 (510)
T ss_pred CEEEE-EEccccC
Confidence 99974 4555443
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-80 Score=698.52 Aligned_cols=432 Identities=27% Similarity=0.429 Sum_probs=347.9
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCC--CCCCcEEEECC-----------------
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAK----------------- 158 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p~~G~i~~~~----------------- 158 (652)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999998888999999999999999999999999999999999997 79999998851
Q ss_pred ------C--------------------CceEEEEecc-CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhH
Q 006275 159 ------S--------------------NMKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211 (652)
Q Consensus 159 ------~--------------------~~~i~~v~Q~-~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (652)
. ...++|++|+ +.+++..|+++|+...+..
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~----------------------- 137 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE----------------------- 137 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-----------------------
Confidence 0 1248999997 5666678999998532110
Q ss_pred HHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q 006275 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291 (652)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD 291 (652)
...+..+..+++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 138 ----------------~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD 200 (520)
T TIGR03269 138 ----------------IGYEGKEAVGRAVDLIEMVQLS-HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD 200 (520)
T ss_pred ----------------cCCCHHHHHHHHHHHHHHcCCh-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCC
Confidence 0011122345677889999996 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006275 292 LDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367 (652)
Q Consensus 292 ~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (652)
+.+++++.++|+ +.|+|||+||||++++.++||+|++|++|++. +.|+++++.....
T Consensus 201 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~------------------ 261 (520)
T TIGR03269 201 PQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK-EEGTPDEVVAVFM------------------ 261 (520)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEe-eecCHHHHHHHHH------------------
Confidence 999999977663 35899999999999999999999999999874 5687766532100
Q ss_pred HHHHHHHHhccCccccchhHHHHHHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeC-----Ceeeeec
Q 006275 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----DRLLFNR 442 (652)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~-----~~~vl~~ 442 (652)
..... . .++ ++ ...++++|+++|++++|+ .+.+|++
T Consensus 262 ---~~~~~-------------------~------~~~----------~~-~~~~~~~l~~~~l~~~~~~~~~~~~~il~~ 302 (520)
T TIGR03269 262 ---EGVSE-------------------V------EKE----------CE-VEVGEPIIKVRNVSKRYISVDRGVVKAVDN 302 (520)
T ss_pred ---hhchh-------------------h------ccc----------cc-cCCCCceEEEeccEEEeccCCCCCceEEee
Confidence 00000 0 000 00 011345899999999995 2579999
Q ss_pred eEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEC-cee---c-------------ccceecccccccCCCCC
Q 006275 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-EHN---V-------------LPNYFEQNQAEALDLDK 505 (652)
Q Consensus 443 isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~-g~~---~-------------~~~~~~~~~~~~~~~~~ 505 (652)
+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ + ..+|++|. ..+++.+
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~--~~l~~~~ 380 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE--YDLYPHR 380 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccC--cccCCCC
Confidence 999999999999999999999999999999999999999995 421 1 12455554 3466778
Q ss_pred CHHHHHHHhhh----h-ccHHHHHHHHhhCCCCh----hhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q 006275 506 TVLETVAEAAE----D-WRIDDIKGLLGRCNFKA----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (652)
Q Consensus 506 tv~e~~~~~~~----~-~~~~~~~~~L~~~~l~~----~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~ 576 (652)
|+.+|+..... . .....+.++++.+++.. +..++++.+|||||||||+|||||+.+|+||||||||++||+
T Consensus 381 tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~ 460 (520)
T TIGR03269 381 TVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP 460 (520)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 99999975321 1 11235678899999953 257899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 577 PSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 577 ~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
.+++.+.+.|++ .+.|||+||||++++..+|||+++|++|++. ..|++++..+
T Consensus 461 ~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 517 (520)
T TIGR03269 461 ITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV-KIGDPEEIVE 517 (520)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999864 3569999999999999999999999999997 4577766543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-80 Score=702.02 Aligned_cols=445 Identities=20% Similarity=0.356 Sum_probs=351.5
Q ss_pred CceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC------
Q 006275 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN------ 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~------ 160 (652)
++|+++|++++|++ +++|+++||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 36999999999963 5799999999999999999999999999999999999986 79999987632
Q ss_pred --------ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhC
Q 006275 161 --------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (652)
Q Consensus 161 --------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (652)
.+|||++|++. +.+..|+.+|+...... . ...
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~---------------~-----------------------~~~ 125 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSL---------------H-----------------------RGM 125 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHH---------------h-----------------------cCC
Confidence 25999999974 44556888886421100 0 001
Q ss_pred ChhcHHHHHHHHhhhcCCCc--ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----
Q 006275 231 NLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---- 304 (652)
Q Consensus 231 ~~~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---- 304 (652)
......+++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 205 (529)
T PRK15134 126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE 205 (529)
T ss_pred CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh
Confidence 11223456778899999963 146889999999999999999999999999999999999999999999988754
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q 006275 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR 384 (652)
Q Consensus 305 ~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 384 (652)
.|+|||+||||++++..+||||++|++|++. +.|...++...... .+ .......
T Consensus 206 ~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~~~~~-------~~---------~~~~~~~--------- 259 (529)
T PRK15134 206 LNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRAATLFSAPTH-------PY---------TQKLLNS--------- 259 (529)
T ss_pred cCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCHHHHhhCCCC-------HH---------HHHHHHh---------
Confidence 4899999999999999999999999999974 55665443221000 00 0000000
Q ss_pred hhHHHHHHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeC-----------CeeeeeceEEEEEcCeEE
Q 006275 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----------DRLLFNRANLTIERGEKT 453 (652)
Q Consensus 385 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~-----------~~~vl~~isl~i~~Ge~~ 453 (652)
. +.... . +. ...+.++|+++|++++|+ ++.+|+++||+|++||++
T Consensus 260 -----------------~-~~~~~---~--~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~ 315 (529)
T PRK15134 260 -----------------E-PSGDP---V--PL-PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETL 315 (529)
T ss_pred -----------------C-ccccc---c--cc-CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEE
Confidence 0 00000 0 00 112355799999999995 357999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------cceecccccccCCCCCCHHHHHHHhhhh---
Q 006275 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------PNYFEQNQAEALDLDKTVLETVAEAAED--- 517 (652)
Q Consensus 454 ~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------~~~~~~~~~~~~~~~~tv~e~~~~~~~~--- 517 (652)
||+||||||||||+++|+|+++ ++|+|+++|.++. .+|++|+....+++..|+.+|+......
T Consensus 316 ~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~ 394 (529)
T PRK15134 316 GLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP 394 (529)
T ss_pred EEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc
Confidence 9999999999999999999995 8999999997642 2355554322466778999999864210
Q ss_pred ---c--cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---
Q 006275 518 ---W--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--- 589 (652)
Q Consensus 518 ---~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--- 589 (652)
. ....+.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+++
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 1 12357789999999645679999999999999999999999999999999999999999999999999753
Q ss_pred -CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 590 -KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 590 -~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+.|||+||||++++..+|||+++|++|++. ..|+.+++++
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 515 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVV-EQGDCERVFA 515 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-EEcCHHHHhc
Confidence 569999999999999999999999999997 4577777654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-80 Score=696.16 Aligned_cols=436 Identities=23% Similarity=0.326 Sum_probs=344.3
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCCC-----------ceEE
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MKIA 164 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p--~~G~i~~~~~~-----------~~i~ 164 (652)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.. ..|+
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 7899999999988899999999999999999999999999999999999987 79999998732 3599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+++..|+.||+....... ... . .........++.++++
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~~~~-------------~~~-~---------------------~~~~~~~~~~~~~~l~ 126 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGNEIT-------------LPG-G---------------------RMAYNAMYLRAKNLLR 126 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhcccc-------------ccc-c---------------------ccCHHHHHHHHHHHHH
Confidence 9999998878889999985321000 000 0 0001122345677889
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (652)
.+|+.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|+ +.|+|||+||||++++..
T Consensus 127 ~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~ 206 (500)
T TIGR02633 127 ELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKA 206 (500)
T ss_pred HcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHH
Confidence 99986433467799999999999999999999999999999999999999999988864 468899999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhh
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 401 (652)
+||+|++|++|++. ..|+..++... ..+..+.+.. .
T Consensus 207 ~~d~i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~~~--------------------~ 242 (500)
T TIGR02633 207 VCDTICVIRDGQHV-ATKDMSTMSED-----------------------DIITMMVGRE--------------------I 242 (500)
T ss_pred hCCEEEEEeCCeEe-eecCcccCCHH-----------------------HHHHHHhCcc--------------------c
Confidence 99999999999974 44443221100 0000000000 0
Q ss_pred cccccccceEEecCCCCCCCCcEEEEEeeeeEe---CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-C
Q 006275 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-R 477 (652)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y---~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-~ 477 (652)
... .. ......++.+|+++|++++| +++.+|+++||+|++||+++|+||||||||||+++|+|+++| +
T Consensus 243 ~~~-------~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~ 314 (500)
T TIGR02633 243 TSL-------YP-HEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF 314 (500)
T ss_pred ccc-------cc-ccccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC
Confidence 000 00 00001234589999999999 345799999999999999999999999999999999999985 8
Q ss_pred eeEEEECceecc-----------cceeccccc-ccCCCCCCHHHHHHHhhh----h----c---cHHHHHHHHhhCCCCh
Q 006275 478 GGEVLLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAAE----D----W---RIDDIKGLLGRCNFKA 534 (652)
Q Consensus 478 ~G~i~~~g~~~~-----------~~~~~~~~~-~~~~~~~tv~e~~~~~~~----~----~---~~~~~~~~L~~~~l~~ 534 (652)
+|+|.++|.++. .+|++|... ..+++.+|+.+|+..... . . ....+.++++++++..
T Consensus 315 ~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 394 (500)
T TIGR02633 315 EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394 (500)
T ss_pred CeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC
Confidence 999999997652 245555432 246677899999875310 0 0 1234778999999953
Q ss_pred hhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEE
Q 006275 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVV 611 (652)
Q Consensus 535 ~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi 611 (652)
...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++.++|||++
T Consensus 395 ~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~ 474 (500)
T TIGR02633 395 ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVL 474 (500)
T ss_pred CCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 4578999999999999999999999999999999999999999999999888754 5699999999999999999999
Q ss_pred EEeCCEEEe
Q 006275 612 EVKGSNLQD 620 (652)
Q Consensus 612 ~l~~g~i~~ 620 (652)
+|++|++..
T Consensus 475 ~l~~G~i~~ 483 (500)
T TIGR02633 475 VIGEGKLKG 483 (500)
T ss_pred EEECCEEEE
Confidence 999999874
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-80 Score=696.28 Aligned_cols=437 Identities=23% Similarity=0.371 Sum_probs=347.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~ 165 (652)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 6999999999998889999999999999999999999999999999999999999999998732 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++..||+||+....... ... ...+......++.++++.
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~~~~-----------~~~------------------------~~~~~~~~~~~~~~~l~~ 128 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGREFV-----------NRF------------------------GRIDWKKMYAEADKLLAR 128 (501)
T ss_pred EEcchhccCCCcHHHHhhhccccc-----------ccc------------------------CccCHHHHHHHHHHHHHH
Confidence 999998878899999985321000 000 000011223456778899
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (652)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|+ +.|+|||+||||++++..+
T Consensus 129 ~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~ 207 (501)
T PRK10762 129 LNLR-FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEI 207 (501)
T ss_pred cCCC-CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 9996 56788999999999999999999999999999999999999999999987764 3588999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhhc
Q 006275 323 CTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIE 402 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~ 402 (652)
||+|++|++|++. ..|...++... ..++...+. . +.. .
T Consensus 208 ~d~i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~~----~----------~~~----~ 245 (501)
T PRK10762 208 CDDVTVFRDGQFI-AEREVADLTED-----------------------SLIEMMVGR----K----------LED----Q 245 (501)
T ss_pred CCEEEEEeCCEEE-EecCcCcCCHH-----------------------HHHHHhcCC----C----------ccc----c
Confidence 9999999999974 45544332110 000000000 0 000 0
Q ss_pred ccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE
Q 006275 403 KPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (652)
Q Consensus 403 ~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~ 482 (652)
.+ .. + ..++.++++++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 246 ~~------~~--~--~~~~~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~ 310 (501)
T PRK10762 246 YP------RL--D--KAPGEVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVT 310 (501)
T ss_pred cc------cc--c--cCCCCcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 00 00 0 012345799999985 379999999999999999999999999999999999999999999
Q ss_pred ECceecc-----------cceeccccc-ccCCCCCCHHHHHHHhhh----h--------ccHHHHHHHHhhCCCChhhhc
Q 006275 483 LGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAAE----D--------WRIDDIKGLLGRCNFKADMLD 538 (652)
Q Consensus 483 ~~g~~~~-----------~~~~~~~~~-~~~~~~~tv~e~~~~~~~----~--------~~~~~~~~~L~~~~l~~~~~~ 538 (652)
++|.++. .+|++|... ..+++..|+.+|+..... . .....+.++++.+++.....+
T Consensus 311 ~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 390 (501)
T PRK10762 311 LDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSME 390 (501)
T ss_pred ECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCcc
Confidence 9997652 245555532 235677899999875311 0 112347789999999534679
Q ss_pred cCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeC
Q 006275 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKG 615 (652)
Q Consensus 539 ~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~ 615 (652)
+++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+++ +.|||+||||++++.++||++++|++
T Consensus 391 ~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 470 (501)
T PRK10762 391 QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHE 470 (501)
T ss_pred CchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999999875 35999999999999999999999999
Q ss_pred CEEEeecCChhh
Q 006275 616 SNLQDYAGDYNV 627 (652)
Q Consensus 616 g~i~~~~g~~~~ 627 (652)
|++.. .|+.++
T Consensus 471 G~i~~-~~~~~~ 481 (501)
T PRK10762 471 GRISG-EFTREQ 481 (501)
T ss_pred CEEEE-Eecccc
Confidence 99873 454443
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-80 Score=694.00 Aligned_cols=439 Identities=22% Similarity=0.338 Sum_probs=345.9
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~ 164 (652)
++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 36999999999998889999999999999999999999999999999999999999999998732 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+++..||.+|+........ . ...+......++.++++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~------------~------------------------~~~~~~~~~~~~~~~l~ 126 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHK------------G------------------------GIVNRRLLNYEAREQLE 126 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccc------------c------------------------CCCCHHHHHHHHHHHHH
Confidence 99999988788899999853210000 0 00011123445677889
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (652)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|+ +.|+|||+||||++++..
T Consensus 127 ~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~ 205 (501)
T PRK11288 127 HLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFA 205 (501)
T ss_pred HcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 56788899999999999999999999999999999999999999999998875 458999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhh
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 401 (652)
+||+|++|++|++. ..+. .+..... ....+.+.... .
T Consensus 206 ~~d~i~~l~~G~i~-~~~~--~~~~~~~--------------------~~~~~~~~~~~--------------------~ 242 (501)
T PRK11288 206 LCDAITVFKDGRYV-ATFD--DMAQVDR--------------------DQLVQAMVGRE--------------------I 242 (501)
T ss_pred hCCEEEEEECCEEE-eecC--ccccCCH--------------------HHHHHHhcCCC--------------------c
Confidence 99999999999974 2221 1100000 00000010000 0
Q ss_pred cccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
... ...++ ...++..++++|+++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|
T Consensus 243 ~~~-------~~~~~-~~~~~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i 310 (501)
T PRK11288 243 GDI-------YGYRP-RPLGEVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV 310 (501)
T ss_pred ccc-------ccccc-cCCCCcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE
Confidence 000 00000 1123457999999842 58999999999999999999999999999999999999999999
Q ss_pred EECceecc-----------cceeccccc-ccCCCCCCHHHHHHHhhh-----------h-ccHHHHHHHHhhCCCChhhh
Q 006275 482 LLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAAE-----------D-WRIDDIKGLLGRCNFKADML 537 (652)
Q Consensus 482 ~~~g~~~~-----------~~~~~~~~~-~~~~~~~tv~e~~~~~~~-----------~-~~~~~~~~~L~~~~l~~~~~ 537 (652)
.++|+++. .+|++|+.. ..+++..|+.+|+..... . ...+.+.++++.+++..+..
T Consensus 311 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 390 (501)
T PRK11288 311 YLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR 390 (501)
T ss_pred EECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCc
Confidence 99987652 134555432 236677899999875321 0 11235778999999954567
Q ss_pred ccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEe
Q 006275 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVK 614 (652)
Q Consensus 538 ~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~ 614 (652)
++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++|+++ +.|||+||||++++..+||++++|+
T Consensus 391 ~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~ 470 (501)
T PRK11288 391 EQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMR 470 (501)
T ss_pred cCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999998654 5699999999999999999999999
Q ss_pred CCEEEeecCChhh
Q 006275 615 GSNLQDYAGDYNV 627 (652)
Q Consensus 615 ~g~i~~~~g~~~~ 627 (652)
+|++.. .|..++
T Consensus 471 ~g~i~~-~~~~~~ 482 (501)
T PRK11288 471 EGRIAG-ELAREQ 482 (501)
T ss_pred CCEEEE-EEcccc
Confidence 999873 455544
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-79 Score=684.51 Aligned_cols=434 Identities=22% Similarity=0.270 Sum_probs=334.2
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v 166 (652)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 5999999999988889999999999999999999999999999999999999999999987632 138999
Q ss_pred eccCccCC--------CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 167 SQEFEVSM--------SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 167 ~Q~~~~~~--------~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
+|++.... ..|+.+++... ....++
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~ 115 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDE-----------------------------------------------VKDPAR 115 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccc-----------------------------------------------hhHHHH
Confidence 99864311 23444443200 011334
Q ss_pred HHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecC
Q 006275 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315 (652)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd 315 (652)
+.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .|+|||+||||
T Consensus 116 ~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~ 194 (490)
T PRK10938 116 CEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194 (490)
T ss_pred HHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 56778888986 567899999999999999999999999999999999999999999999988743 48899999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERL 395 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l 395 (652)
++++.++||+|++|++|++. +.|+++++..... +.++... +++
T Consensus 195 ~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~~~~-----------------------~~~~~~~-------------~~~ 237 (490)
T PRK10938 195 FDEIPDFVQFAGVLADCTLA-ETGEREEILQQAL-----------------------VAQLAHS-------------EQL 237 (490)
T ss_pred HHHHHhhCCEEEEEECCEEE-EeCCHHHHhcchh-----------------------hhhhhhh-------------hcc
Confidence 99999999999999999984 5677554322100 0000000 000
Q ss_pred HHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 396 QEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
.. ...+..... ..+.......++|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+
T Consensus 238 ~~---~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 238 EG---VQLPEPDEP---SARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred Cc---cccCccccc---ccccccCCCCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 00 000000000 000001124568999999999988889999999999999999999999999999999999887
Q ss_pred C-CeeEEEECceecc-----------cceecccccccCCCCCCHHHHHHHhhh----------hccHHHHHHHHhhCCCC
Q 006275 476 P-RGGEVLLGEHNVL-----------PNYFEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFK 533 (652)
Q Consensus 476 p-~~G~i~~~g~~~~-----------~~~~~~~~~~~~~~~~tv~e~~~~~~~----------~~~~~~~~~~L~~~~l~ 533 (652)
| ++|+|.++|.++. .+|+.|..........++.+++..... ......+.++++.+++.
T Consensus 312 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 391 (490)
T PRK10938 312 QGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGID 391 (490)
T ss_pred cccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCc
Confidence 6 6999999986531 234444321111123456665543210 01123577899999996
Q ss_pred hhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---Cc-eEEEEecCHHHHHh-hcc
Q 006275 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KG-TVITVSHDRYFVKQ-IVN 608 (652)
Q Consensus 534 ~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~-tvi~vsHd~~~i~~-~~d 608 (652)
....++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++|+++ +. |||+||||++++.. +||
T Consensus 392 ~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d 471 (490)
T PRK10938 392 KRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITH 471 (490)
T ss_pred hhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhhe
Confidence 43678999999999999999999999999999999999999999999999999875 33 69999999999987 599
Q ss_pred EEEEEeCCEEEee
Q 006275 609 RVVEVKGSNLQDY 621 (652)
Q Consensus 609 rvi~l~~g~i~~~ 621 (652)
++++|++|+++++
T Consensus 472 ~v~~l~~G~i~~~ 484 (490)
T PRK10938 472 RLEFVPDGDIYRY 484 (490)
T ss_pred eEEEecCCceEEe
Confidence 9999999998764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-79 Score=684.35 Aligned_cols=430 Identities=20% Similarity=0.312 Sum_probs=337.9
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEEEec
Q 006275 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQ 168 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~v~Q 168 (652)
++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 3689999998889999999999999999999999999999999999999999999998742 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++..||++|+....... ... ..+.....+++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~--------------~~~----------------------~~~~~~~~~~~~~~l~~~~l 124 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPT--------------KGM----------------------FVDQDKMYRDTKAIFDELDI 124 (491)
T ss_pred ccccccCCCHHHHhhcccccc--------------ccc----------------------ccCHHHHHHHHHHHHHHcCC
Confidence 998778899999985321000 000 00011123456678888898
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCe
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ 325 (652)
. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|+ +.|+|||+||||++++..+||+
T Consensus 125 ~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 125 D-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred C-CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 6 46788899999999999999999999999999999999999999999988774 3589999999999999999999
Q ss_pred EEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhhcccc
Q 006275 326 IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPF 405 (652)
Q Consensus 326 ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 405 (652)
|++|++|++. ..|+..+.... +..+.+.+. . ....
T Consensus 204 i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~~-~-------------------~~~~- 238 (491)
T PRK10982 204 ITILRDGQWI-ATQPLAGLTMD-----------------------KIIAMMVGR-S-------------------LTQR- 238 (491)
T ss_pred EEEEECCEEE-eecChhhCCHH-----------------------HHHHHHhCC-C-------------------cccc-
Confidence 9999999974 55553332100 001111000 0 0000
Q ss_pred cccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECc
Q 006275 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (652)
Q Consensus 406 ~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (652)
+. +....+++++|+++|+++.| +.+|+++||+|++||++||+||||||||||+++|+|+.+|++|+|.++|
T Consensus 239 ------~~-~~~~~~~~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 309 (491)
T PRK10982 239 ------FP-DKENKPGEVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG 309 (491)
T ss_pred ------cc-cccCCCCCcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECC
Confidence 00 00011234579999999885 4699999999999999999999999999999999999999999999999
Q ss_pred eecc-----------cceeccccc-ccCCCCCCHHHH-----HHHhhhh-------ccHHHHHHHHhhCCCChhhhccCc
Q 006275 486 HNVL-----------PNYFEQNQA-EALDLDKTVLET-----VAEAAED-------WRIDDIKGLLGRCNFKADMLDRKV 541 (652)
Q Consensus 486 ~~~~-----------~~~~~~~~~-~~~~~~~tv~e~-----~~~~~~~-------~~~~~~~~~L~~~~l~~~~~~~~~ 541 (652)
.++. .+|++|... ..+++..++.+| +...... .....+.++++.+++..+..++++
T Consensus 310 ~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 389 (491)
T PRK10982 310 KKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI 389 (491)
T ss_pred EECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc
Confidence 7653 234444322 234556666655 3221110 012346788999998534579999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecCHHHHHhhccEEEEEeCCEE
Q 006275 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE---YKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 542 ~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~i~~~~drvi~l~~g~i 618 (652)
.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++|++ .+.|||+||||++++..+|||+++|++|++
T Consensus 390 ~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i 469 (491)
T PRK10982 390 GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469 (491)
T ss_pred ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999998864 467999999999999999999999999999
Q ss_pred Ee
Q 006275 619 QD 620 (652)
Q Consensus 619 ~~ 620 (652)
..
T Consensus 470 ~~ 471 (491)
T PRK10982 470 AG 471 (491)
T ss_pred EE
Confidence 74
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-76 Score=684.51 Aligned_cols=541 Identities=24% Similarity=0.402 Sum_probs=374.8
Q ss_pred ccchhhhHHHHhhhhhHHhhhccCccccccccccccCCCCCCCCCCCceEEEeEEEEeCCee---eeeeeeEEEECCCEE
Q 006275 50 SAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT---VLKDVTWEVKKGEKV 126 (652)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ls~~y~~~~---vL~~vsl~i~~Ge~~ 126 (652)
....+...++..++.++..+++..++.+..+.....+ .........|+++||+|+|+.++ +|+++||.|++|+.+
T Consensus 305 gqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~--~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~v 382 (1228)
T KOG0055|consen 305 GQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGG--RVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTV 382 (1228)
T ss_pred hccccchHHHhccccchHHHHHHhcCCCCCCcccccC--CcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEE
Confidence 3455566778888888888888776655444443111 12233566799999999998764 999999999999999
Q ss_pred EEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHH
Q 006275 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (652)
Q Consensus 127 ~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~ 196 (652)
||||||||||||++++|.+++.|++|+|.++|.+. +||.|+|+|.+ ++.||+|||..+-.+. ..
T Consensus 383 alVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl-F~~tI~eNI~~G~~da-----t~ 456 (1228)
T KOG0055|consen 383 ALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL-FATTIRENIRYGKPDA-----TR 456 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhh-hcccHHHHHhcCCCcc-----cH
Confidence 99999999999999999999999999999998754 59999999954 8999999997543220 01
Q ss_pred HHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 006275 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (652)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~ 276 (652)
+++.++... ....+++..+++ |+.+..+++ ..+|||||||||||||||+.
T Consensus 457 ~~i~~a~k~-ana~~fi~~lp~----------------------------g~~T~vge~-g~qLSGGQKQRIAIARalv~ 506 (1228)
T KOG0055|consen 457 EEIEEAAKA-ANAHDFILKLPD----------------------------GYDTLVGER-GVQLSGGQKQRIAIARALVR 506 (1228)
T ss_pred HHHHHHHHH-ccHHHHHHhhHH----------------------------hhcccccCC-CCCCChHHHHHHHHHHHHHh
Confidence 112222111 111222222222 222223333 46699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHHHHHH---H
Q 006275 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAA---W 351 (652)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~---~ 351 (652)
+|+|||||||||+||+++++.+.+.|.+ .|+|.|+|+|++..+.. ||+|+++++|+++ ..|+.++++..... +
T Consensus 507 ~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~Iv-E~G~h~ELi~~~G~Y~~l 584 (1228)
T KOG0055|consen 507 NPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIV-EQGTHDELIALGGIYSSL 584 (1228)
T ss_pred CCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEE-EecCHHHHHhccchHHHH
Confidence 9999999999999999999999999864 58999999999999976 9999999999984 55655544331000 0
Q ss_pred HHH----------------------H-------------------------H-----H-------------------HHH
Q 006275 352 IES----------------------Q-------------------------Y-----A-------------------AWE 360 (652)
Q Consensus 352 ~~~----------------------~-------------------------~-----~-------------------~~~ 360 (652)
+.. . . . .|.
T Consensus 585 v~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~i~k~~~pe~~ 664 (1228)
T KOG0055|consen 585 VRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEEDEKVSFWRIFKLNKPEWP 664 (1228)
T ss_pred HHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccccccccccccccccHHHHHHhccchhH
Confidence 000 0 0 0 000
Q ss_pred -----------------------------------HHHHH----H--------------------------HHHHHH---
Q 006275 361 -----------------------------------KQQRE----I--------------------------EQTKDL--- 372 (652)
Q Consensus 361 -----------------------------------~~~~~----~--------------------------~~~~~~--- 372 (652)
...+. + +++..+
T Consensus 665 ~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~ 744 (1228)
T KOG0055|consen 665 YLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRS 744 (1228)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 000000
Q ss_pred -----------------------HHHhccCccccch--------------------------------------------
Q 006275 373 -----------------------INRLGAGANSGRA-------------------------------------------- 385 (652)
Q Consensus 373 -----------------------~~~l~~~~~~~~~-------------------------------------------- 385 (652)
..||..+++.-++
T Consensus 745 ~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~ 824 (1228)
T KOG0055|consen 745 MMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILS 824 (1228)
T ss_pred HHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000
Q ss_pred ---------------hH--------HHHHHHHHH------H-------Hh-hhcccc-----------------------
Q 006275 386 ---------------SS--------AEKKLERLQ------E-------EE-QIEKPF----------------------- 405 (652)
Q Consensus 386 ---------------~~--------~~~~l~~l~------~-------~~-~~~~~~----------------------- 405 (652)
.. +...++.++ . +. ...+|.
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~ 904 (1228)
T KOG0055|consen 825 GYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFF 904 (1228)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000000000 0 00 000000
Q ss_pred -------------------------------------------------------------cccceEEecCC-CC---CC
Q 006275 406 -------------------------------------------------------------QRKQMKIRFPE-RG---RS 420 (652)
Q Consensus 406 -------------------------------------------------------------~~~~~~~~~p~-~~---~~ 420 (652)
+++ .++..+. .+ ..
T Consensus 905 ~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~-~~i~~~~~~~~~~~~ 983 (1228)
T KOG0055|consen 905 VYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRK-PTIDPDSTSGGKLPN 983 (1228)
T ss_pred HHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCCcccc
Confidence 000 0011000 11 01
Q ss_pred CCcEEEEEeeeeEeCCe---eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-------
Q 006275 421 GRSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------- 490 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~---~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~------- 490 (652)
-++-|+++||+|+|+.+ +||+|+||+|++|+.+|||||+||||||.+.+|.++++|++|.|.+||.++..
T Consensus 984 ~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred ceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 13459999999999865 58999999999999999999999999999999999999999999999998742
Q ss_pred ---ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCCh------hhhcc----CcCCCCHHHHHHHHHHHH
Q 006275 491 ---NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA------DMLDR----KVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 491 ---~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~------~~~~~----~~~~LSgGqrqrv~LAra 557 (652)
+.+.|. +..++.|++||+.++......+++.++++..+... +-.|. +..+||||||||+|||||
T Consensus 1064 ~~i~lVsQE---P~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1064 KQIGLVSQE---PVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HhcceeccC---chhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 233333 34568999999999843455666666666554421 11233 345999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcCCc
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFSPF 635 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~~~ 635 (652)
++++|+||||||.||+||.++.+.++++|.+. +.|+|+|+|++.++.+ ||.|+|+++|+|++ .|+.++.++..-.+
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE-~GtH~~L~~~~G~Y 1218 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVE-QGTHDELLAKRGIY 1218 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEe-cccHHHHHhCCCch
Confidence 99999999999999999999999999999976 5699999999999987 99999999999985 69999888765554
Q ss_pred c
Q 006275 636 L 636 (652)
Q Consensus 636 ~ 636 (652)
+
T Consensus 1219 ~ 1219 (1228)
T KOG0055|consen 1219 F 1219 (1228)
T ss_pred H
Confidence 4
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-75 Score=686.47 Aligned_cols=553 Identities=24% Similarity=0.401 Sum_probs=409.2
Q ss_pred cccccccccccccccccCCC--ccccccccchhhhHHHHhhhhhHHhhhccCccccccccccccCCCCCCCCCCCceEEE
Q 006275 24 PFASAKSFTNSLNFTKKQRP--RITCQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLE 101 (652)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 101 (652)
.+++...|.....|+.+++| .+|..++..++..+|+.+ +.+++..++........ .........++++
T Consensus 453 ~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~R----i~~fl~~~e~~~~~~~~------~~~~~~~~~i~i~ 522 (1381)
T KOG0054|consen 453 LLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKR----LKEFLLSEELDPDSVER------SPDEAGENAIEIK 522 (1381)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCcccCcccccc------CCCCCCCceEEEe
Confidence 45566788888888888887 688899999999999999 77777665433211110 1112334569999
Q ss_pred eEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCH
Q 006275 102 NISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178 (652)
Q Consensus 102 ~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv 178 (652)
|.+|+|++ .+.|+||||+|++|+.+||||+.|||||+||.+|+|+++..+|+|.++| .++||+|.||+ ++.||
T Consensus 523 ~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g---siaYv~Q~pWI-~ngTv 598 (1381)
T KOG0054|consen 523 NGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG---SVAYVPQQPWI-QNGTV 598 (1381)
T ss_pred eeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---eEEEeccccHh-hCCcH
Confidence 99999965 3499999999999999999999999999999999999999999999875 59999999998 78999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCC
Q 006275 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (652)
Q Consensus 179 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~ 258 (652)
+|||. |+.+++. + +|..++++|.++++++-+ . .|..++.++| ..
T Consensus 599 reNIL--FG~~~d~----~---------------------------rY~~Vi~aC~L~~Dle~L-p-~GD~TeIGEr-Gi 642 (1381)
T KOG0054|consen 599 RENIL--FGSPYDE----E---------------------------RYDKVIKACALKKDLEIL-P-FGDLTEIGER-GI 642 (1381)
T ss_pred HHhhh--cCccccH----H---------------------------HHHHHHHHccCHhHHhhc-C-CCCcceecCC-cc
Confidence 99997 3332221 2 344445555666555433 2 2444566665 79
Q ss_pred CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcCeEEEEcCCeEE
Q 006275 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 259 ~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~-L~~--~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~ 335 (652)
+|||||||||+||||+|+++||+|||+|+|++|.++.++|++- ++. .++|+|+|||.++++. -||.|++|++|++
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~-~ad~Iivl~~G~I- 720 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP-HADQIIVLKDGKI- 720 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh-hCCEEEEecCCeE-
Confidence 9999999999999999999999999999999999999988753 322 3799999999999995 5999999999998
Q ss_pred EecCChHHHHHHH-----------------------------------H-H-----------------------------
Q 006275 336 TYEGNYSQYVLEK-----------------------------------A-A----------------------------- 350 (652)
Q Consensus 336 ~~~g~~~~~~~~~-----------------------------------~-~----------------------------- 350 (652)
...|+|+++.... . .
T Consensus 721 ~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~ 800 (1381)
T KOG0054|consen 721 VESGTYEELLKSGGDFAELAHEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGK 800 (1381)
T ss_pred ecccCHHHHHhcchhHHHHhhccchhhccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCE
Confidence 5789888766300 0 0
Q ss_pred --------------------------------------HHHHHH------H-----H--HH-------------------
Q 006275 351 --------------------------------------WIESQY------A-----A--WE------------------- 360 (652)
Q Consensus 351 --------------------------------------~~~~~~------~-----~--~~------------------- 360 (652)
|+..+. . . +-
T Consensus 801 v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~ 880 (1381)
T KOG0054|consen 801 VSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSF 880 (1381)
T ss_pred eeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 0 00
Q ss_pred --------------------------------------------------------------------------------
Q 006275 361 -------------------------------------------------------------------------------- 360 (652)
Q Consensus 361 -------------------------------------------------------------------------------- 360 (652)
T Consensus 881 ~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~f 960 (1381)
T KOG0054|consen 881 LFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWF 960 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHHH------------
Q 006275 361 ------------------------------------------------------KQQREIEQTKDLIN------------ 374 (652)
Q Consensus 361 ------------------------------------------------------~~~~~~~~~~~~~~------------ 374 (652)
++...++++...++
T Consensus 961 li~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a 1040 (1381)
T KOG0054|consen 961 LIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISA 1040 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 00000000000000
Q ss_pred ---------Hhc---------------cC-ccccchhHH------------------------HHHHHHHHHHhhhcccc
Q 006275 375 ---------RLG---------------AG-ANSGRASSA------------------------EKKLERLQEEEQIEKPF 405 (652)
Q Consensus 375 ---------~l~---------------~~-~~~~~~~~~------------------------~~~l~~l~~~~~~~~~~ 405 (652)
-+. .. .++|.++-+ ...+||+.++...++..
T Consensus 1041 ~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~ 1120 (1381)
T KOG0054|consen 1041 NRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEA 1120 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCC
Confidence 000 00 112221100 11126666665432220
Q ss_pred cccceEEecCCCCCCCCcEEEEEeeeeEeCCe--eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE
Q 006275 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (652)
Q Consensus 406 ~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~--~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~ 483 (652)
......-. |++.||.++.|+++|++.+|.+. +||+||||+|++||++||||++|||||||+.+|.++.+|.+|+|.|
T Consensus 1121 p~~~~~~~-pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~I 1199 (1381)
T KOG0054|consen 1121 PLEIEESR-PPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILI 1199 (1381)
T ss_pred CCCCcCCC-CCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEE
Confidence 01111112 77889999999999999999754 7999999999999999999999999999999999999999999999
Q ss_pred Cceeccc----------ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhh------hccC----cCC
Q 006275 484 GEHNVLP----------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM------LDRK----VSL 543 (652)
Q Consensus 484 ~g~~~~~----------~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~------~~~~----~~~ 543 (652)
||.++.. ..++|+ +..++-|++.|+.-. ..+.+++++++|+++++.... +|.. ..+
T Consensus 1200 DgvdI~~igL~dLRsrlsIIPQd---PvLFsGTvR~NLDPf-~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N 1275 (1381)
T KOG0054|consen 1200 DGVDISKIGLHDLRSRLSIIPQD---PVLFSGTVRFNLDPF-DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGEN 1275 (1381)
T ss_pred cCeecccccHHHHHhcCeeeCCC---CceecCccccccCcc-cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCcc
Confidence 9998731 234543 344678898887543 346778899999999885322 2222 258
Q ss_pred CCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh-cC-ceEEEEecCHHHHHhhccEEEEEeCCEEEee
Q 006275 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE-YK-GTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (652)
Q Consensus 544 LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-~~-~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~ 621 (652)
+|-||||.+||||||+++++||+|||+|+++|+++...+++.|++ |+ .|||.|+|++++|.+ ||||+||++|++++|
T Consensus 1276 ~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1276 FSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF 1354 (1381)
T ss_pred CChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeec
Confidence 999999999999999999999999999999999999999999995 44 599999999999999 999999999999976
Q ss_pred cCChhhHhhhcCCc
Q 006275 622 AGDYNVCFTSFSPF 635 (652)
Q Consensus 622 ~g~~~~~~~~~~~~ 635 (652)
|+|.+.++.....
T Consensus 1355 -dsP~~Ll~~~~S~ 1367 (1381)
T KOG0054|consen 1355 -DSPAELLSDKDSL 1367 (1381)
T ss_pred -CChHHHHhCCcch
Confidence 7777777654433
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=593.01 Aligned_cols=452 Identities=21% Similarity=0.342 Sum_probs=366.6
Q ss_pred CCceEEEeEEEEeC----CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC-----
Q 006275 95 SSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~----- 160 (652)
++.++++|+++.|. ...++++|||+|.+||.+||||.+|||||-..+.|+|+++. -+|+|.++|.+
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 46799999999995 45699999999999999999999999999999999999975 36899998853
Q ss_pred ---------ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHh
Q 006275 161 ---------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (652)
Q Consensus 161 ---------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (652)
.+|++++|+|. +.+-.|+...+.... +....
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l--------------------------------------~~Hrg 125 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVL--------------------------------------RLHRG 125 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHH--------------------------------------HHHhc
Confidence 27999999984 323335554443211 11122
Q ss_pred CChhcHHHHHHHHhhhcCCCcc--cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----
Q 006275 230 VNLDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---- 303 (652)
Q Consensus 230 ~~~~~~~~~i~~ll~~lgl~~~--~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---- 303 (652)
+.....+.++.++|+.+|++.+ ..+.++++|||||||||+||.||+.+|++||.||||.+||.....++.++|+
T Consensus 126 ~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~ 205 (534)
T COG4172 126 LSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA 205 (534)
T ss_pred ccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH
Confidence 3444567788899999999743 5678899999999999999999999999999999999999999999988875
Q ss_pred cCCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 006275 304 KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (652)
Q Consensus 304 ~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (652)
+.|.++++||||+..+.++||||.+|..|.+ +..|...++..... ..| ++.+++.
T Consensus 206 ~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i-vE~~~t~~lF~~Pq-------HpY---------Tr~Ll~a-------- 260 (534)
T COG4172 206 ELGMAILFITHDLGIVRKFADRVYVMQHGEI-VETGTTETLFAAPQ-------HPY---------TRKLLAA-------- 260 (534)
T ss_pred HhCcEEEEEeccHHHHHHhhhhEEEEeccEE-eecCcHHHHhhCCC-------ChH---------HHHHHhc--------
Confidence 4699999999999999999999999999998 46665444332211 011 1112210
Q ss_pred chhHHHHHHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCC-----------eeeeeceEEEEEcCeE
Q 006275 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEK 452 (652)
Q Consensus 384 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-----------~~vl~~isl~i~~Ge~ 452 (652)
.|...+ ++.+..+.++++.++|.+.|+- ..+++++||++++|+.
T Consensus 261 -------------------eP~g~~------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqT 315 (534)
T COG4172 261 -------------------EPSGDP------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQT 315 (534)
T ss_pred -------------------CCCCCC------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCe
Confidence 111000 2223345678999999999952 2479999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-------------ceecccccccCCCCCCHHHHHHHhhh---
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-------------NYFEQNQAEALDLDKTVLETVAEAAE--- 516 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-------------~~~~~~~~~~~~~~~tv~e~~~~~~~--- 516 (652)
+||||.+|||||||-++|.+++++. |+|.++|.++.. ..++|++-..+.|.+||.+.+..+..
T Consensus 316 lGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~ 394 (534)
T COG4172 316 LGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394 (534)
T ss_pred EEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC
Confidence 9999999999999999999999887 999999988631 24566666678899999999987642
Q ss_pred -----hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q 006275 517 -----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-- 589 (652)
Q Consensus 517 -----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-- 589 (652)
....+.+.++|..+|++....+++|+++|||||||++|||||+.+|++++||||||+||..-+..+.++++++
T Consensus 395 ~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~ 474 (534)
T COG4172 395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQ 474 (534)
T ss_pred CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHH
Confidence 1234568899999999999999999999999999999999999999999999999999999999999988754
Q ss_pred --CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcCCcc
Q 006275 590 --KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFSPFL 636 (652)
Q Consensus 590 --~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~~~~ 636 (652)
+.+.++||||+..+..+||+|+||++|+|++ .|+.+.+++.....|
T Consensus 475 k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE-~G~~~~if~~P~~~Y 522 (534)
T COG4172 475 KHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE-QGPTEAVFANPQHEY 522 (534)
T ss_pred HhCCeEEEEeccHHHHHHhhceEEEEeCCEEee-eCCHHHHhcCCCcHH
Confidence 4599999999999999999999999999996 588888776554433
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-73 Score=644.99 Aligned_cols=419 Identities=26% Similarity=0.380 Sum_probs=320.3
Q ss_pred eEEEEeCCe-eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE-----------ECCCC---------
Q 006275 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-----------KAKSN--------- 160 (652)
Q Consensus 102 ~ls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~-----------~~~~~--------- 160 (652)
+++++|+++ .+|++++ .+++|+++||+||||||||||+++|+|+++|++|+|. ++|.+
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 489999875 5999999 9999999999999999999999999999999999997 55432
Q ss_pred ---ceEEEEeccCccCC---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhc
Q 006275 161 ---MKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~---~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (652)
.++++.+|.....+ ..||.|++... .
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------------------------------------------~ 188 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------------------------------------------D 188 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhh------------------------------------------------h
Confidence 23565565432222 23666665210 0
Q ss_pred HHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccC--CCeEEEE
Q 006275 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVII 312 (652)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~--g~tvIiv 312 (652)
...++.++++.+|+. ...++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++. |+|||+|
T Consensus 189 ~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIiv 267 (590)
T PRK13409 189 ERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVV 267 (590)
T ss_pred HHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Confidence 123455678888886 5679999999999999999999999999999999999999999999998887543 8999999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKL 392 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 392 (652)
|||++++..+||+|+++.++. |.|..+....... ..+ ...+..+.. .
T Consensus 268 sHd~~~l~~~~D~v~vl~~~~-----g~~g~~~~~~~~~------------~~i---~~~~~~~~~---------~---- 314 (590)
T PRK13409 268 EHDLAVLDYLADNVHIAYGEP-----GAYGVVSKPKGVR------------VGI---NEYLKGYLP---------E---- 314 (590)
T ss_pred eCCHHHHHHhCCEEEEEeCCc-----cccceecchhHHH------------HhH---HHHHHhcch---------h----
Confidence 999999999999999997642 1111111000000 000 000000000 0
Q ss_pred HHHHHHhhhcccccccceEEecC--CCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHH
Q 006275 393 ERLQEEEQIEKPFQRKQMKIRFP--ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (652)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l 470 (652)
+.++ .. + ....+..+ .....+.++++++|+++.|++. .|+++||+|++||+++|+||||||||||+++|
T Consensus 315 e~~~----~~-~---~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L 385 (590)
T PRK13409 315 ENMR----IR-P---EPIEFEERPPRDESERETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLL 385 (590)
T ss_pred hhhh----cc-c---cCcceecCCCccccCCceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHH
Confidence 0000 00 0 00001111 1111345689999999999765 49999999999999999999999999999999
Q ss_pred hCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhcc-HHHHHHHHhhCCCChhhhccCcCCCCHHHH
Q 006275 471 MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (652)
Q Consensus 471 ~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~LSgGqr 549 (652)
+|+++|++|+|.++ +..+|++|.. ...+..||.+++........ ...+.++++.+++. +..++++.+||||||
T Consensus 386 ~Gl~~p~~G~I~~~---~~i~y~~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~ 459 (590)
T PRK13409 386 AGVLKPDEGEVDPE---LKISYKPQYI--KPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGEL 459 (590)
T ss_pred hCCCCCCceEEEEe---eeEEEecccc--cCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHH
Confidence 99999999999886 3456777754 34578899999986432221 23467889999995 678999999999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 550 qrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
|||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|||+++|++ ++.
T Consensus 460 QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~ 532 (590)
T PRK13409 460 QRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPG 532 (590)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cce
Confidence 9999999999999999999999999999999999999875 56999999999999999999999975 554
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=602.86 Aligned_cols=487 Identities=31% Similarity=0.503 Sum_probs=384.7
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~ 174 (652)
...|.+.+.+..||++.+|++-++++..|-++||||+||+|||||||+|+. |.|.... ++|+..-
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~-------veqE~~g-- 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFH-------VEQEVRG-- 142 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccC-------chhheec--
Confidence 446899999999999999999999999999999999999999999999996 4443221 1222100
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChh-cHHHHHHHHhhhcCCCcccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD-TLDAKVSKLMPELGFTADDG 253 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~ll~~lgl~~~~~ 253 (652)
..| +.+.......... .+++. .. ..+... .+++...++|..+||+++..
T Consensus 143 ~~t--~~~~~~l~~D~~~-----------------~dfl~----------~e-~~l~~~~~l~ei~~~~L~glGFt~emq 192 (582)
T KOG0062|consen 143 DDT--EALQSVLESDTER-----------------LDFLA----------EE-KELLAGLTLEEIYDKILAGLGFTPEMQ 192 (582)
T ss_pred cch--HHHhhhhhccHHH-----------------HHHHH----------hh-hhhhccchHHHHHHHHHHhCCCCHHHH
Confidence 000 0000000000000 00000 00 001111 22333444889999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCe
Q 006275 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 254 ~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~ 333 (652)
.+++.+||||||+|++|||||..+|||||||||||+||..+..||.++|+..+.|+|+||||..|++.+|+.||.+++-+
T Consensus 193 ~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 193 LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred hccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ccccchhHHHHHHHHHHHHhhhcccccccceEE
Q 006275 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG-ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKI 412 (652)
Q Consensus 334 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 412 (652)
+..|.|||++|...+++....+...|+.+.+..+..+..+++++=. +.+..++++.+.++++ +...++.......+
T Consensus 273 L~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl---~~lk~~~~~~~~~~ 349 (582)
T KOG0062|consen 273 LDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKL---PALKSTLIEVLIGF 349 (582)
T ss_pred hhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccC---CCCCccceecccce
Confidence 9999999999999998888888888887776666667777765421 1122333333333332 22233444444556
Q ss_pred ecCCCC-CCCCcEEEEEeeeeEeCCe--eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc
Q 006275 413 RFPERG-RSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489 (652)
Q Consensus 413 ~~p~~~-~~~~~~i~~~~v~~~y~~~--~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~ 489 (652)
.+|+++ ..+.+.+++.+|+|.|... +++.++++.++.-++++++|+||+||||+++++.|...|..|.+.+.+. +.
T Consensus 350 ~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r-~r 428 (582)
T KOG0062|consen 350 LFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR-LR 428 (582)
T ss_pred ecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc-ce
Confidence 677743 4567889999999999754 4899999999999999999999999999999999999999999988764 56
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
.+|+.|..-..+....+..+.++........++++.-|+.+|++.++...++..||||||-||+||.+.+.+|.+|+|||
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 67888865444444445555555544445678899999999999999988999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||+||.++...|-++|+.|++.||+||||.+|+..+|+.+|+.++|++..+.|...+|.+
T Consensus 509 PTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~yKk 569 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYKK 569 (582)
T ss_pred CCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988898877644
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=690.08 Aligned_cols=486 Identities=19% Similarity=0.341 Sum_probs=344.2
Q ss_pred CceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCC-cEEEECCCCceEEEEeccCc
Q 006275 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKSNMKIAFLSQEFE 171 (652)
Q Consensus 96 ~~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~-G~i~~~~~~~~i~~v~Q~~~ 171 (652)
..|+++|++|+|++ +++|+|+||+|++|++++|+||+|||||||+++|+|+++|++ |+|.+. .+|+||+|+||
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~---~~Iayv~Q~p~ 689 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR---GTVAYVPQVSW 689 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc---CeEEEEcCccc
Confidence 35999999999964 569999999999999999999999999999999999999999 999874 47999999999
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcc
Q 006275 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (652)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (652)
+ ++.||+|||..+- +.+ -+++.+.++ .|.+..++..+ . -|+.+.
T Consensus 690 L-fngTIreNI~fg~--~~d----~e~y~~vl~---------------------------a~~L~~di~~L-P-~Gd~T~ 733 (1622)
T PLN03130 690 I-FNATVRDNILFGS--PFD----PERYERAID---------------------------VTALQHDLDLL-P-GGDLTE 733 (1622)
T ss_pred c-CCCCHHHHHhCCC--ccc----HHHHHHHHH---------------------------HhCcHHHHHhC-C-Cccccc
Confidence 8 6789999997431 111 122333333 23333333322 1 144444
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH-HHHcc--CCCeEEEEecCHHHHHhhcCeEEE
Q 006275 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE-GYLGK--QDVPMVIISHDRAFLDQLCTKIVE 328 (652)
Q Consensus 252 ~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~-~~L~~--~g~tvIivsHd~~~l~~~~d~ii~ 328 (652)
.+++ ..+|||||||||+|||||+++|+|||||||||+||+++.+.+. +.++. .++|+|+|||+++.+ ..||+|++
T Consensus 734 IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l-~~aD~Ii~ 811 (1622)
T PLN03130 734 IGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFL-SQVDRIIL 811 (1622)
T ss_pred ccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHH-HhCCEEEE
Confidence 4444 6889999999999999999999999999999999999988775 34443 489999999999988 56999999
Q ss_pred EcCCeEEEecCChHHHHHHHH---------------------------------------------------------HH
Q 006275 329 TEMGVSRTYEGNYSQYVLEKA---------------------------------------------------------AW 351 (652)
Q Consensus 329 l~~G~~~~~~g~~~~~~~~~~---------------------------------------------------------~~ 351 (652)
|++|++. ..|+|+++..... ..
T Consensus 812 L~~G~i~-e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1622)
T PLN03130 812 VHEGMIK-EEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIK 890 (1622)
T ss_pred EeCCEEE-EeCCHHHHHhcchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 9999874 5666555421000 00
Q ss_pred HHHH---------HHHHH--------------------------------HHHHH-------------------------
Q 006275 352 IESQ---------YAAWE--------------------------------KQQRE------------------------- 365 (652)
Q Consensus 352 ~~~~---------~~~~~--------------------------------~~~~~------------------------- 365 (652)
.+.. +..|. |....
T Consensus 891 ~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~ 970 (1622)
T PLN03130 891 QEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVT 970 (1622)
T ss_pred HHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHH
Confidence 0000 00000 00000
Q ss_pred --------------HHHHH---------------------HHHHHhccC-------------------------------
Q 006275 366 --------------IEQTK---------------------DLINRLGAG------------------------------- 379 (652)
Q Consensus 366 --------------~~~~~---------------------~~~~~l~~~------------------------------- 379 (652)
..+++ +.++|+..+
T Consensus 971 ~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~ 1050 (1622)
T PLN03130 971 LLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGI 1050 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 006275 380 -------------------------------------------------------------------------------- 379 (652)
Q Consensus 380 -------------------------------------------------------------------------------- 379 (652)
T Consensus 1051 ~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~ 1130 (1622)
T PLN03130 1051 VSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTL 1130 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------cc-------ccchh------------------------HHHHHHHHHH
Q 006275 380 --------------------------------AN-------SGRAS------------------------SAEKKLERLQ 396 (652)
Q Consensus 380 --------------------------------~~-------~~~~~------------------------~~~~~l~~l~ 396 (652)
.. ++..+ .....++|+.
T Consensus 1131 ~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~ 1210 (1622)
T PLN03130 1131 VNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1210 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 0000001111
Q ss_pred HHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 397 EEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+.... +++.........|++.|+.++.|+++||+++|.+ .++|+|+||+|++||++|||||||||||||+++|+|++
T Consensus 1211 e~~~~-~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~ 1289 (1622)
T PLN03130 1211 TYIDL-PSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV 1289 (1622)
T ss_pred HHhCC-CCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 11000 0000000000012234555667999999999964 37999999999999999999999999999999999999
Q ss_pred CCCeeEEEECceecc----------cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhh-------
Q 006275 475 KPRGGEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML------- 537 (652)
Q Consensus 475 ~p~~G~i~~~g~~~~----------~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~------- 537 (652)
+|++|+|.+||.++. .++++|+ + ..++.|+++|+.... ...+++++++++++++. +..
T Consensus 1290 ~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQd--p-~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~-~~I~~lp~GL 1364 (1622)
T PLN03130 1290 ELERGRILIDGCDISKFGLMDLRKVLGIIPQA--P-VLFSGTVRFNLDPFN-EHNDADLWESLERAHLK-DVIRRNSLGL 1364 (1622)
T ss_pred CCCCceEEECCEecccCCHHHHHhccEEECCC--C-ccccccHHHHhCcCC-CCCHHHHHHHHHHcCcH-HHHHhCcccc
Confidence 999999999999863 2355554 3 345679999997654 45667788888887773 222
Q ss_pred c----cCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEE
Q 006275 538 D----RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVV 611 (652)
Q Consensus 538 ~----~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi 611 (652)
| ....+||||||||+||||||+++|+|||||||||+||.++.+.+++.|++. +.|||+|+|+++++.+ ||||+
T Consensus 1365 dt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIl 1443 (1622)
T PLN03130 1365 DAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRIL 1443 (1622)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEE
Confidence 2 233589999999999999999999999999999999999999999999865 4699999999999987 99999
Q ss_pred EEeCCEEEeecCChhhHhhh
Q 006275 612 EVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 612 ~l~~g~i~~~~g~~~~~~~~ 631 (652)
+|++|+|+++ |++++.++.
T Consensus 1444 VLd~G~IvE~-Gt~~eLl~~ 1462 (1622)
T PLN03130 1444 VLDAGRVVEF-DTPENLLSN 1462 (1622)
T ss_pred EEECCEEEEe-CCHHHHHhC
Confidence 9999999864 888887654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-71 Score=686.20 Aligned_cols=488 Identities=19% Similarity=0.341 Sum_probs=342.5
Q ss_pred CceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCcc
Q 006275 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (652)
Q Consensus 96 ~~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~ 172 (652)
..|+++|++|+|++ +++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|.+.. .+..|+||+|+||+
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~--~~~~Iayv~Q~p~L 690 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV--IRGSVAYVPQVSWI 690 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE--ecCcEEEEcCcccc
Confidence 35999999999974 46999999999999999999999999999999999999999986643 24579999999998
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccc
Q 006275 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (652)
Q Consensus 173 ~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (652)
++.||+|||..+- ..+ .+++.+.++. +.+..++.. ++ -|+.+..
T Consensus 691 -f~gTIreNI~fg~--~~~----~e~~~~vl~~---------------------------~~L~~di~~-Lp-~Gd~T~I 734 (1495)
T PLN03232 691 -FNATVRENILFGS--DFE----SERYWRAIDV---------------------------TALQHDLDL-LP-GRDLTEI 734 (1495)
T ss_pred -ccccHHHHhhcCC--ccC----HHHHHHHHHH---------------------------hCCHHHHHh-CC-CCCCcee
Confidence 6789999997431 111 0222222322 223333322 21 1444444
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH-HHcc--CCCeEEEEecCHHHHHhhcCeEEEE
Q 006275 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~-~L~~--~g~tvIivsHd~~~l~~~~d~ii~l 329 (652)
+++ ..+|||||||||+||||++++|+|||||||||+||+++.+.+.+ .++. .++|+|+|||+++.+ ..||+|++|
T Consensus 735 Ge~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l-~~aD~Ii~L 812 (1495)
T PLN03232 735 GER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFL-PLMDRIILV 812 (1495)
T ss_pred cCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhH-HhCCEEEEE
Confidence 444 68999999999999999999999999999999999999887754 3443 579999999999988 569999999
Q ss_pred cCCeEEEecCChHHHHHHHH----------------------------------------------------H--HHHHH
Q 006275 330 EMGVSRTYEGNYSQYVLEKA----------------------------------------------------A--WIESQ 355 (652)
Q Consensus 330 ~~G~~~~~~g~~~~~~~~~~----------------------------------------------------~--~~~~~ 355 (652)
++|++. ..|+++++..... . ..+..
T Consensus 813 ~~G~i~-~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 891 (1495)
T PLN03232 813 SEGMIK-EEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEER 891 (1495)
T ss_pred eCCEEE-EecCHHHHHhcchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccchhhhhhHHHH
Confidence 999873 5566554321000 0 00000
Q ss_pred ---------H-----------------------------H-HHH--HHHHH----------H------------------
Q 006275 356 ---------Y-----------------------------A-AWE--KQQRE----------I------------------ 366 (652)
Q Consensus 356 ---------~-----------------------------~-~~~--~~~~~----------~------------------ 366 (652)
+ . -|- |.... +
T Consensus 892 ~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~ 971 (1495)
T PLN03232 892 ETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNS 971 (1495)
T ss_pred hcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 000 00000 0
Q ss_pred -----------HHHHH-HHH--------------------HhccC-----------------------------------
Q 006275 367 -----------EQTKD-LIN--------------------RLGAG----------------------------------- 379 (652)
Q Consensus 367 -----------~~~~~-~~~--------------------~l~~~----------------------------------- 379 (652)
.+++. ..+ |+..+
T Consensus 972 ~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~ 1051 (1495)
T PLN03232 972 FWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTI 1051 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 006275 380 -------------------------------------------------------------------------------- 379 (652)
Q Consensus 380 -------------------------------------------------------------------------------- 379 (652)
T Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (1495)
T PLN03232 1052 SLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTS 1131 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------cc-------ccchh------------------------HHHHHHHHHHHHhh
Q 006275 380 ----------------------------AN-------SGRAS------------------------SAEKKLERLQEEEQ 400 (652)
Q Consensus 380 ----------------------------~~-------~~~~~------------------------~~~~~l~~l~~~~~ 400 (652)
.. .+..+ .....++|+.+...
T Consensus 1132 ~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~ 1211 (1495)
T PLN03232 1132 SNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYID 1211 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 00000 00000011111100
Q ss_pred hcccccccceEEecCCCCCCCCcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCe
Q 006275 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478 (652)
Q Consensus 401 ~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~ 478 (652)
. +++.........|+..|+..+.|+++||+++|++ +++|+|+||+|++||++|||||||||||||+++|+|+++|++
T Consensus 1212 ~-~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~ 1290 (1495)
T PLN03232 1212 L-PSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290 (1495)
T ss_pred C-CccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 0 0000000000012223555567999999999953 479999999999999999999999999999999999999999
Q ss_pred eEEEECceecc----------cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhh-----------
Q 006275 479 GEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML----------- 537 (652)
Q Consensus 479 G~i~~~g~~~~----------~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~----------- 537 (652)
|+|.+||.++. .++++|+ +.+ ++.|+++|+.... ...+++++++++..++.. ..
T Consensus 1291 G~I~IdG~di~~i~~~~lR~~i~iVpQd--p~L-F~gTIr~NL~~~~-~~sdeei~~al~~a~l~~-~I~~lp~GLdt~v 1365 (1495)
T PLN03232 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQS--PVL-FSGTVRFNIDPFS-EHNDADLWEALERAHIKD-VIDRNPFGLDAEV 1365 (1495)
T ss_pred ceEEECCEEhhhCCHHHHHhhcEEECCC--Cee-eCccHHHHcCCCC-CCCHHHHHHHHHHcCCHH-HHHhCcCCCCcee
Confidence 99999998863 2355554 333 5679999997653 456677888888887742 22
Q ss_pred ccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeC
Q 006275 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKG 615 (652)
Q Consensus 538 ~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~ 615 (652)
.....+||||||||+||||||+++|+|||||||||+||.++.+.+++.|++. +.|||+|+|+++++.+ ||||++|++
T Consensus 1366 ~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~ 1444 (1495)
T PLN03232 1366 SEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSS 1444 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEEC
Confidence 2234589999999999999999999999999999999999999999999875 4699999999999987 999999999
Q ss_pred CEEEeecCChhhHhhhc
Q 006275 616 SNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 616 g~i~~~~g~~~~~~~~~ 632 (652)
|++++ .|++++.++..
T Consensus 1445 G~ivE-~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1445 GQVLE-YDSPQELLSRD 1460 (1495)
T ss_pred CEEEE-ECCHHHHHhCC
Confidence 99986 48888876543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=678.59 Aligned_cols=208 Identities=22% Similarity=0.371 Sum_probs=176.2
Q ss_pred CCCCCcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------
Q 006275 418 GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------ 489 (652)
Q Consensus 418 ~~~~~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------ 489 (652)
.|+.++.|+++||+++|++ .++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.++.
T Consensus 1278 ~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~ 1357 (1522)
T TIGR00957 1278 GWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHD 1357 (1522)
T ss_pred CCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHH
Confidence 4566677999999999974 46999999999999999999999999999999999999999999999999873
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChh------hhccC----cCCCCHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD------MLDRK----VSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~------~~~~~----~~~LSgGqrqrv~LA 555 (652)
.++++|+ + ..++.|+++|+.... ...+++++++++.+++... -.|.. ..+||||||||+|||
T Consensus 1358 LR~~i~iVpQd--p-~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1358 LRFKITIIPQD--P-VLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred HHhcCeEECCC--C-cccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHH
Confidence 2355554 3 345679999996332 4567778888888877421 12333 357999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||+++|+|||||||||+||.++...+++.|++. +.|||+|+|+++.+.+ ||||++|++|+|++ .|++++.++.
T Consensus 1434 RALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE-~G~~~eLl~~ 1509 (1522)
T TIGR00957 1434 RALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAE-FGAPSNLLQQ 1509 (1522)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999999999999999865 4599999999999987 89999999999986 4888887654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-71 Score=594.98 Aligned_cols=433 Identities=25% Similarity=0.398 Sum_probs=355.5
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceE
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i 163 (652)
.+.++++|++|+|++.++|++|||+|.+||++||+|.||||||||+|+|+|.++|++|+|.++|.. ..|
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 457999999999999999999999999999999999999999999999999999999999999853 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+.++|+..+.+++||.|||+..-.. . +....++...+.++..++|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~--~---------------------------------~~~g~id~~~m~~~A~~~l 130 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREP--T---------------------------------RRFGLIDRKAMRRRARELL 130 (500)
T ss_pred EEEeechhccCCccHHHHhhccccc--c---------------------------------cCCCccCHHHHHHHHHHHH
Confidence 9999999999999999999632100 0 0011245566788888999
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l~ 320 (652)
..+|+.. ..+.++.+||+||||.|+|||||..+++||||||||++|+....+.|++++ ++.|.+||+|||+++++.
T Consensus 131 ~~lg~~~-~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~ 209 (500)
T COG1129 131 ARLGLDI-DPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF 209 (500)
T ss_pred HHcCCCC-ChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence 9999963 378899999999999999999999999999999999999999999998775 568999999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHh
Q 006275 321 QLCTKIVETEMGVSRTYEGNY-SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~ 399 (652)
++||||.+|.+|+.+ ..++. .++- ..+++..+.+ +.
T Consensus 210 ~i~DritVlRDG~~v-~~~~~~~~~~-----------------------~~~lv~~MvG-----r~-------------- 246 (500)
T COG1129 210 EIADRITVLRDGRVV-GTRPTAAETS-----------------------EDELVRLMVG-----RE-------------- 246 (500)
T ss_pred HhcCEEEEEeCCEEe-eecccccCCC-----------------------HHHHHHHhhC-----cc--------------
Confidence 999999999999974 22221 1110 0011111111 00
Q ss_pred hhcccccccceEEecC--CCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 006275 400 QIEKPFQRKQMKIRFP--ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (652)
Q Consensus 400 ~~~~~~~~~~~~~~~p--~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~ 477 (652)
... .+| .....+.+.++++|++.. ..++++||++++||++||.|--|||+|-|+++|+|..++.
T Consensus 247 -~~~---------~~~~~~~~~~~~~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~ 312 (500)
T COG1129 247 -LED---------LFPEPPEEGIGEPVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS 312 (500)
T ss_pred -hhh---------hcccccccCCCCcEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC
Confidence 000 011 111345677999999854 2589999999999999999999999999999999999999
Q ss_pred eeEEEECceeccc-----------ceeccc-ccccCCCCCCHHHHHHHhhh-h----------ccHHHHHHHHhhCCCCh
Q 006275 478 GGEVLLGEHNVLP-----------NYFEQN-QAEALDLDKTVLETVAEAAE-D----------WRIDDIKGLLGRCNFKA 534 (652)
Q Consensus 478 ~G~i~~~g~~~~~-----------~~~~~~-~~~~~~~~~tv~e~~~~~~~-~----------~~~~~~~~~L~~~~l~~ 534 (652)
+|+|.++|+++.. .|++.+ ....+...+++.+|+..... . .....+.++..++++..
T Consensus 313 ~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~ 392 (500)
T COG1129 313 SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT 392 (500)
T ss_pred CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCccc
Confidence 9999999987632 344432 34567889999999866511 0 01234677889999988
Q ss_pred hhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEE
Q 006275 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVV 611 (652)
Q Consensus 535 ~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi 611 (652)
...+.++.+||||.||||.|||+|..+|+||||||||.|+|..++..++++|+++ +.+||+||-++.++..+||||+
T Consensus 393 ~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIl 472 (500)
T COG1129 393 PSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRIL 472 (500)
T ss_pred CCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEE
Confidence 8888999999999999999999999999999999999999999999999999976 4699999999999999999999
Q ss_pred EEeCCEEEe
Q 006275 612 EVKGSNLQD 620 (652)
Q Consensus 612 ~l~~g~i~~ 620 (652)
+|++|++..
T Consensus 473 Vm~~Gri~~ 481 (500)
T COG1129 473 VMREGRIVG 481 (500)
T ss_pred EEECCEEEE
Confidence 999999974
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-67 Score=643.47 Aligned_cols=204 Identities=24% Similarity=0.408 Sum_probs=173.3
Q ss_pred cEEEEEeeeeEeCC---eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----------------------
Q 006275 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP----------------------- 476 (652)
Q Consensus 423 ~~i~~~~v~~~y~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p----------------------- 476 (652)
+.|+++||+|+|++ .++|+|+||+|++|+++|||||||||||||+++|+|+++|
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 35999999999963 4799999999999999999999999999999999999998
Q ss_pred -------------------------------CeeEEEECceecc----------cceecccccccCCCCCCHHHHHHHhh
Q 006275 477 -------------------------------RGGEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVAEAA 515 (652)
Q Consensus 477 -------------------------------~~G~i~~~g~~~~----------~~~~~~~~~~~~~~~~tv~e~~~~~~ 515 (652)
++|+|.+||.++. .+|++|++ ..++.|++||+.++.
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep---~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEP---MLFNMSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCC---ccccccHHHHHhcCC
Confidence 6999999999873 24565542 446899999999986
Q ss_pred hhccHHHHHHHHhhCCCCh------hhhc----cCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q 006275 516 EDWRIDDIKGLLGRCNFKA------DMLD----RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585 (652)
Q Consensus 516 ~~~~~~~~~~~L~~~~l~~------~~~~----~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 585 (652)
.....+++.++++..++.. +-.+ .....||||||||++|||||+++|+|||||||||+||.++.+.+++.
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 6566777888777776631 1112 23457999999999999999999999999999999999999999999
Q ss_pred HHhc----CceEEEEecCHHHHHhhccEEEEEeC----CEEEeecCChhhHhh
Q 006275 586 ISEY----KGTVITVSHDRYFVKQIVNRVVEVKG----SNLQDYAGDYNVCFT 630 (652)
Q Consensus 586 l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~----g~i~~~~g~~~~~~~ 630 (652)
|.+. +.|+|+|||++..+.. ||+|++|++ |+++...|++++.++
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9875 4699999999999976 999999998 886645799888765
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=642.65 Aligned_cols=206 Identities=21% Similarity=0.371 Sum_probs=174.2
Q ss_pred CCCCCcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------
Q 006275 418 GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------ 489 (652)
Q Consensus 418 ~~~~~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------ 489 (652)
.|+..+.|+++||+++|++ +++|+|+||+|++||++||||+||||||||+++|+|+++ .+|+|.+||.++.
T Consensus 1211 ~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~ 1289 (1490)
T TIGR01271 1211 CWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQT 1289 (1490)
T ss_pred CCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHH
Confidence 4666778999999999964 679999999999999999999999999999999999997 7999999999873
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhh------hccC----cCCCCHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM------LDRK----VSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~------~~~~----~~~LSgGqrqrv~LA 555 (652)
..+++|+ + ..++.|+++|+... ....+++++++|+++++.... ++.. ..+||||||||+|||
T Consensus 1290 lR~~is~IpQd--p-~LF~GTIR~NLdp~-~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LA 1365 (1490)
T TIGR01271 1290 WRKAFGVIPQK--V-FIFSGTFRKNLDPY-EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLA 1365 (1490)
T ss_pred HHhceEEEeCC--C-ccCccCHHHHhCcc-cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHH
Confidence 1345554 3 34567999999643 245677889999998874211 1222 237999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||+++|+||||||||++||.++...+++.|++. +.|||+|||+++.+.. ||||++|++|+|+++ |++++.++
T Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~-g~p~~Ll~ 1440 (1490)
T TIGR01271 1366 RSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQY-DSIQKLLN 1440 (1490)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEe-CCHHHHHc
Confidence 9999999999999999999999999999999865 3699999999999987 999999999999865 88887664
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-66 Score=638.76 Aligned_cols=204 Identities=21% Similarity=0.321 Sum_probs=173.6
Q ss_pred CcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
.+.|+++||+++|++ .++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.
T Consensus 1306 ~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred CCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc
Confidence 456999999999964 35999999999999999999999999999999999999999999999999873
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhh------hcc----CcCCCCHHHHHHHHHHHHHc
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM------LDR----KVSLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~------~~~----~~~~LSgGqrqrv~LAral~ 559 (652)
.++++|++ ..++.|+++|+... ....+++++++++.+++.... .|. ...+||||||||+||||||+
T Consensus 1386 I~iVpQdp---~LF~gTIreNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL 1461 (1560)
T PTZ00243 1386 FSMIPQDP---VLFDGTVRQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALL 1461 (1560)
T ss_pred ceEECCCC---ccccccHHHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHh
Confidence 23555543 34567999999653 345677899999998884211 122 33579999999999999999
Q ss_pred cC-CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 560 KP-STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 560 ~~-p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
++ |+|||||||||+||.++.+.+++.|++. +.|||+|+|+++.+.+ ||+|++|++|+|.+ .|++++.++.
T Consensus 1462 ~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE-~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1462 KKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAE-MGSPRELVMN 1534 (1560)
T ss_pred cCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 95 8999999999999999999999999875 3699999999999976 99999999999986 5988887753
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=549.33 Aligned_cols=437 Identities=25% Similarity=0.386 Sum_probs=357.3
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~ 164 (652)
..+++++++|.|++..++++|||+|++||++||+|.||||||||+++|.|+++|++|+|.++|+. ..||
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999863 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
+|+|++.+.+++||.||+..+..... ...++.....+++.++.+
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~------------------------------------~~~~~~~~~~~~i~~l~~ 126 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSK------------------------------------GGLIDRRQARARIKELSE 126 (501)
T ss_pred EEeeccccccccchhhhhhhcCcccc------------------------------------ccccCHHHHHHHHHHHHH
Confidence 99999999999999999964321100 001233456778889999
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHh
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l~~ 321 (652)
.+||+ -..++++.+||-||||||.|-+||+.+|++|||||||+-|-|...+.|+..| ++.|+|||+|||.++++.+
T Consensus 127 ~yGl~-vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 127 RYGLP-VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HhCCC-CCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 99997 5678999999999999999999999999999999999999999999998876 4679999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhh
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 401 (652)
+|||+.+|+.|+.+ |.++..... . ..++..-+.+ + .+
T Consensus 206 iaDrvTVLR~Gkvv---gt~~~~~~~--------------t------~~ela~lMvG-----~---------------~v 242 (501)
T COG3845 206 IADRVTVLRRGKVV---GTVDPVAET--------------T------EEELAELMVG-----R---------------EV 242 (501)
T ss_pred hhCeeEEEeCCeEE---eeecCCCCC--------------C------HHHHHHHhcC-----C---------------cc
Confidence 99999999999864 222210000 0 0001111111 0 00
Q ss_pred cccccccceEEecCCCCCCCCcEEEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q 006275 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (652)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (652)
..+.. -.+..++++++++++++..-.. ...+++|||+|.+||++||.|-.|-|-+.|+.+|+|+.+|.+|+
T Consensus 243 ~~~~~--------~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~ 314 (501)
T COG3845 243 VLRVV--------KPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGR 314 (501)
T ss_pred ccccc--------cCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCce
Confidence 11000 0223466889999999987543 46799999999999999999999999999999999999999999
Q ss_pred EEECceec----cc--------ceeccc-ccccCCCCCCHHHHHHHhhhh-----------c--cHHHHHHHHhhCCCCh
Q 006275 481 VLLGEHNV----LP--------NYFEQN-QAEALDLDKTVLETVAEAAED-----------W--RIDDIKGLLGRCNFKA 534 (652)
Q Consensus 481 i~~~g~~~----~~--------~~~~~~-~~~~~~~~~tv~e~~~~~~~~-----------~--~~~~~~~~L~~~~l~~ 534 (652)
|.++|.++ .+ +|++.+ ....+.+.+|+.||+...... + ......+++++|++..
T Consensus 315 I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~ 394 (501)
T COG3845 315 ILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394 (501)
T ss_pred EEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC
Confidence 99999986 11 344443 245677899999998765321 1 1234678899999876
Q ss_pred hhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEE
Q 006275 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVV 611 (652)
Q Consensus 535 ~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi 611 (652)
.....++.+||||++||+-+||-|.++|++||..+||.|||..+.+.+.+.|.+. +.+|++||-|++++..+||||.
T Consensus 395 ~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIa 474 (501)
T COG3845 395 PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIA 474 (501)
T ss_pred CCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheee
Confidence 6677889999999999999999999999999999999999999999999988654 5699999999999999999999
Q ss_pred EEeCCEEEe
Q 006275 612 EVKGSNLQD 620 (652)
Q Consensus 612 ~l~~g~i~~ 620 (652)
+|.+|++..
T Consensus 475 Vi~~Gri~~ 483 (501)
T COG3845 475 VIYEGRIVG 483 (501)
T ss_pred eeeCCceec
Confidence 999999973
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-67 Score=538.36 Aligned_cols=510 Identities=32% Similarity=0.557 Sum_probs=391.5
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCC
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~ 175 (652)
..|.++|.+.+-.++.++.+.||.|-.|.++|||||||-||||||+-|+.-- ..+. +++.+-||.|+... ..
T Consensus 263 ~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra------laIP-pnIDvLlCEQEvva-d~ 334 (807)
T KOG0066|consen 263 MDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARA------LAIP-PNIDVLLCEQEVVA-DS 334 (807)
T ss_pred ccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhh------ccCC-CCCceEeeeeeeee-cC
Confidence 3589999999998999999999999999999999999999999999997531 1111 34568899998543 44
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccC
Q 006275 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (652)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (652)
.|..+.++.+-.........-..+...++.. + ... .++..........+.+...+.+.+.+|..+||+.+..++
T Consensus 335 t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~G--d-~ta---aErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~r 408 (807)
T KOG0066|consen 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEG--D-TTA---AERLKEVADELRAIGADSAEARARRILAGLGFSKEMQER 408 (807)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHcC--c-hHH---HHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcC
Confidence 4555555432222222222222333333321 1 111 111122222233466778889999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCeEE
Q 006275 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~ 335 (652)
|...+|||||+||+|||||+..|.+|+|||||||||.....||-++|+...+|.+|||||-.|++.+|+.||.|++.++.
T Consensus 409 Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 409 PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHH----HHHHHHH---------hhhc
Q 006275 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKK----LERLQEE---------EQIE 402 (652)
Q Consensus 336 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----l~~l~~~---------~~~~ 402 (652)
.|.|+|.-|-....+........|+++++.+.. +..... .+..+++. +.|-+.. ....
T Consensus 489 yYrGNY~~FKKmY~Qk~~e~~K~yekQeK~Lke-------lKa~Gk--S~KqAEkq~Ke~ltrKq~K~~~Knq~dded~g 559 (807)
T KOG0066|consen 489 YYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKE-------LKAEGK--SAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAG 559 (807)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCc--chHHHHHHHHHHHHHHHHhccccccCcccccc
Confidence 999999877554333322233344444443322 111111 11111111 1111100 0000
Q ss_pred ccc-----cccceEEecCCCCCCCCcEEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 006275 403 KPF-----QRKQMKIRFPERGRSGRSVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (652)
Q Consensus 403 ~~~-----~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p 476 (652)
.|+ ..-..+|.||.+.....+++-+.+|+|.|+ .++++++++|-|.--.+++||||||.||||||++|.|-+.|
T Consensus 560 apELL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P 639 (807)
T KOG0066|consen 560 APELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP 639 (807)
T ss_pred CHHHHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC
Confidence 011 112346778888877889999999999995 57899999999999999999999999999999999999999
Q ss_pred CeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHH
Q 006275 477 RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 477 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
..|+..-+ ..+..++|.|...+.+....|..|++...... ..++++..|+.+|+..+.-.-.+..||||||.||+||-
T Consensus 640 ~~GE~RKn-hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNl-pyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValae 717 (807)
T KOG0066|consen 640 NDGELRKN-HRLRIGWFDQHANEALNGEETPVEYLQRKFNL-PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAE 717 (807)
T ss_pred Ccchhhcc-ceeeeechhhhhHHhhccccCHHHHHHHhcCC-ChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHH
Confidence 99998654 34677888888777788888999988765542 35678999999999766555678899999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
.-+..|+|||||||||+||+++...|-++|++|.+.|||||||-..|.+.-...||+++..|-+.+|++++|..
T Consensus 718 Lal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkk 791 (807)
T KOG0066|consen 718 LALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKK 791 (807)
T ss_pred HhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999887678899998888778899998854
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-63 Score=607.91 Aligned_cols=206 Identities=22% Similarity=0.273 Sum_probs=178.1
Q ss_pred cEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------cc
Q 006275 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PN 491 (652)
Q Consensus 423 ~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~ 491 (652)
.+|+++|+++.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++. .+
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 37999999999985 57999999999999999999999999999999999999999999999998762 24
Q ss_pred eecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
|.+|. ..+.+.+|++|++....... ..+.+.++++.+++. +..++++.+|||||||||+||+||+.+|+||
T Consensus 2016 y~pQ~--~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2016 YCPQF--DAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EEecc--ccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 55554 35667899999997643211 123456789999994 6789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
||||||+|||+.+++.+.+.|++. +.|||++||++++++.+||||++|++|++. ..|++++..+..
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~-~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ-CLGTIQHLKSKF 2161 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHHh
Confidence 999999999999999999999764 459999999999999999999999999997 468887764443
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=583.02 Aligned_cols=199 Identities=22% Similarity=0.316 Sum_probs=168.1
Q ss_pred cEEEEEeeeeEeC----CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC---CCeeEEEECceecc------
Q 006275 423 SVVTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK---PRGGEVLLGEHNVL------ 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~----~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~------ 489 (652)
.+++++||++.|+ .+.+|+|||++|++||++||+|||||||||||++|+|+.+ |++|+|.++|.++.
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3589999999995 4579999999999999999999999999999999999997 78999999998763
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhh-----c----cHHHHHHHHhhCCCChhhhccCcC----CCCHHHHHHHHHHH
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAED-----W----RIDDIKGLLGRCNFKADMLDRKVS----LLSGGEKARLAFCK 556 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~-----~----~~~~~~~~L~~~~l~~~~~~~~~~----~LSgGqrqrv~LAr 556 (652)
.+|+.|+ ..+.+..||+|++.+.... . ..+.+.++++.+++. +..++.++ .|||||||||+||+
T Consensus 838 i~yv~Q~--~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 838 IGYVQQQ--DLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-SYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred eeeeccc--ccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 2455554 3456789999999875321 1 123467899999994 56788777 79999999999999
Q ss_pred HHccCCC-eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHH-HHhhccEEEEEeCC-EEEeecCCh
Q 006275 557 FMVKPST-LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYF-VKQIVNRVVEVKGS-NLQDYAGDY 625 (652)
Q Consensus 557 al~~~p~-lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~-i~~~~drvi~l~~g-~i~~~~g~~ 625 (652)
+|+.+|+ ||+|||||+|||..+...+.+.|++. +.|||+++|+++. +.+.||++++|++| +++ +.|+.
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv-~~G~~ 988 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV-YFGDL 988 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE-EECCc
Confidence 9999997 99999999999999999999999865 4699999999987 45679999999987 887 45654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=557.61 Aligned_cols=198 Identities=20% Similarity=0.312 Sum_probs=165.1
Q ss_pred EEEEEeeeeEeC-------------CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEECceec
Q 006275 424 VVTIKNLEFGYE-------------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNV 488 (652)
Q Consensus 424 ~i~~~~v~~~y~-------------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~ 488 (652)
.+.++||++..+ .+.+|+|+|++|++|++++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 488999998763 23699999999999999999999999999999999999863 789999999764
Q ss_pred c-------cceecccccccCCCCCCHHHHHHHhhhh-----c----cHHHHHHHHhhCCCChhhhccCc-----CCCCHH
Q 006275 489 L-------PNYFEQNQAEALDLDKTVLETVAEAAED-----W----RIDDIKGLLGRCNFKADMLDRKV-----SLLSGG 547 (652)
Q Consensus 489 ~-------~~~~~~~~~~~~~~~~tv~e~~~~~~~~-----~----~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 547 (652)
. .+|+.|+ ..+.+..||+|++.+.... . ....+.++++.+++. +..++.+ ..||||
T Consensus 947 ~~~~~~~~igyv~Q~--d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQN--DIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEccc--cccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCCCCcCHH
Confidence 2 2456554 3466789999999875321 1 123467899999995 5667775 589999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHH-HHHhhccEEEEEeC-CEEEeec
Q 006275 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRY-FVKQIVNRVVEVKG-SNLQDYA 622 (652)
Q Consensus 548 qrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~drvi~l~~-g~i~~~~ 622 (652)
|||||+||++|+.+|+||+|||||+|||..+...+.+.|+++ +.|||+++|+.+ .+.+.||++++|++ |+++ +.
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v-~~ 1102 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YS 1102 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE-EE
Confidence 999999999999999999999999999999999999999875 569999999998 47788999999986 8886 55
Q ss_pred CCh
Q 006275 623 GDY 625 (652)
Q Consensus 623 g~~ 625 (652)
|+.
T Consensus 1103 G~~ 1105 (1470)
T PLN03140 1103 GPL 1105 (1470)
T ss_pred CCc
Confidence 664
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-52 Score=398.10 Aligned_cols=210 Identities=29% Similarity=0.480 Sum_probs=186.6
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~ 165 (652)
+|+++|++|+|++..+|++||++|++||+++||||+|||||||||||.|+.+|++|+|.++|.. .++|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 5899999999999999999999999999999999999999999999999999999999999842 36999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
|+|++++++.+||.||++.+.-. ....+..+.+++..++|++
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~--------------------------------------v~~~~k~eA~~~A~~lL~~ 123 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVK--------------------------------------VKKLSKAEAREKALELLEK 123 (240)
T ss_pred ecccccccccchHHHHHHhhhHH--------------------------------------HcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999743210 0113344567778899999
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l~~~ 322 (652)
+|+. +..+.++.+|||||||||||||||+.+|+++|+|||||+|||+...++.+.+ .+.|.|+|+|||++.|+.++
T Consensus 124 VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 124 VGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 9997 6789999999999999999999999999999999999999999999888765 56799999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
||||+++++|++. .+|+++++..
T Consensus 203 adrviFmd~G~ii-e~g~p~~~f~ 225 (240)
T COG1126 203 ADRVIFMDQGKII-EEGPPEEFFD 225 (240)
T ss_pred hheEEEeeCCEEE-EecCHHHHhc
Confidence 9999999999874 6677777654
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-50 Score=416.01 Aligned_cols=433 Identities=26% Similarity=0.405 Sum_probs=284.7
Q ss_pred eEEEEeCCe-eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHH
Q 006275 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180 (652)
Q Consensus 102 ~ls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e 180 (652)
++.-+|+.. ..|-.+- ...+|+++||+|+||-||||-+++|+|++.|.=|+.. .| +-||
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~-------------~p------p~wd 138 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE-------------DP------PSWD 138 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC-------------CC------CCHH
Confidence 356667532 1222221 4578999999999999999999999999999877521 11 1133
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhh----hcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 181 EFMSAFKEEMEIAGKLERVQKALES----AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
++...|... .++.+.+.+-. .......++.+...+.- ...+.+....-.-..+++++.+++. ..++|.
T Consensus 139 eVi~~FrGt-----ELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG--~v~elLk~~de~g~~devve~l~L~-nvl~r~ 210 (591)
T COG1245 139 EVIKRFRGT-----ELQNYFKKLYEGELRAVHKPQYVDLIPKVVKG--KVGELLKKVDERGKFDEVVERLGLE-NVLDRD 210 (591)
T ss_pred HHHHHhhhh-----HHHHHHHHHHcCCcceecchHHHHHHHHHhcc--hHHHHHHhhhhcCcHHHHHHHhcch-hhhhhh
Confidence 333323220 01111111100 00001111111110000 0000011111123566788899996 688999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEcCCe
Q 006275 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l~~G~ 333 (652)
+.+|||||.||+|||.|+++++|++++|||+|.||...+-...++++ +.+++||+|.||+..++-++|.|.++- |.
T Consensus 211 v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y-G~ 289 (591)
T COG1245 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY-GE 289 (591)
T ss_pred hhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe-cC
Confidence 99999999999999999999999999999999999988765554443 348999999999999999999887764 22
Q ss_pred EEEe---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCccccchhHHHHHHHHHHHHhhhcccccccc
Q 006275 334 SRTY---EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR-LGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQ 409 (652)
Q Consensus 334 ~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 409 (652)
--+| .-+++. +.-++. |.+. .. -|.+ ......
T Consensus 290 pg~YGvvs~p~sv--------------------------r~gIN~yL~Gy-----l~-----~EN~--------R~R~~~ 325 (591)
T COG1245 290 PGVYGVVSKPKSV--------------------------RVGINEYLKGY-----LP-----EENV--------RFRPEE 325 (591)
T ss_pred CccceEeccchHH--------------------------HHHHHHHHhcc-----Cc-----hhcc--------cccccc
Confidence 1111 111110 001111 1110 00 0000 011112
Q ss_pred eEEec-CCCCCCC-CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee
Q 006275 410 MKIRF-PERGRSG-RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (652)
Q Consensus 410 ~~~~~-p~~~~~~-~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (652)
..|.. ++..... ..+++..++.+.|++. -|.-=.=+|+.||+++++||||-||||+.++|+|.++|++|. ..+
T Consensus 326 I~F~~~~~~~~~~~~~lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~ 400 (591)
T COG1245 326 IEFEEKPPRDDKARDTLVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED 400 (591)
T ss_pred eeeeccCcccccccceeeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc
Confidence 22321 2222222 5667888888888743 222223456778999999999999999999999999999998 233
Q ss_pred cccceecccccccCCCCCCHHHHHHHhhhh-ccHH-HHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 488 VLPNYFEQNQAEALDLDKTVLETVAEAAED-WRID-DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~-~~~~-~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
+...|-+|...+ ..+.||.+.+...... +... -..++++.+++ .+..++++.+|||||.|||+||.||.+++++.
T Consensus 401 ~~vSyKPQyI~~--~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l-~~i~e~~v~~LSGGELQRvaIaa~L~reADlY 477 (591)
T COG1245 401 LKVSYKPQYISP--DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL-EDLLERPVDELSGGELQRVAIAAALSREADLY 477 (591)
T ss_pred ceEeecceeecC--CCCCcHHHHHHHhhhhhcccchhHHhhcCccch-HHHHhcccccCCchhHHHHHHHHHhccccCEE
Confidence 444555554332 3578999888765443 2211 23456777888 47889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeC
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG 615 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~ 615 (652)
|||||+++||.+.+-.+..+|+++ .+|.++|-||+.++..++||++++++
T Consensus 478 llDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 478 LLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred EecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999999999888888865 46999999999999999999999974
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=388.41 Aligned_cols=205 Identities=29% Similarity=0.440 Sum_probs=182.6
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------cc
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~ 491 (652)
++|+++||+++||+..+|+|||++|++||+++||||||||||||||+|.|+.+|++|+|.++|.++. .+
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 3699999999999999999999999999999999999999999999999999999999999997552 23
Q ss_pred eecccccccCCCCCCHHHHHHHhhh-------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~-------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
.++| ..+++|++||.||+..+.. ....+.+.++|+++|+ .+..+.+|.+|||||||||||||||+.+|++
T Consensus 81 mVFQ--~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL-~~ka~~yP~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 81 MVFQ--QFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGL-ADKADAYPAQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred eecc--cccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCc-hhhhhhCccccCcHHHHHHHHHHHHcCCCCE
Confidence 5554 4579999999999998642 1223457889999999 4778999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+|+|||||+|||+....+.+.++++ +.|+|+|||++.|+.+++|||++|++|++++ .|++++++..
T Consensus 158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie-~g~p~~~f~~ 226 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE-EGPPEEFFDN 226 (240)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEE-ecCHHHHhcC
Confidence 9999999999999999999998865 4599999999999999999999999998885 4687776654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=385.05 Aligned_cols=196 Identities=30% Similarity=0.419 Sum_probs=174.4
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----ceEEEEeccCc
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFE 171 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----~~i~~v~Q~~~ 171 (652)
.++++++++.|++..+|+||||+|.+||+++||||+|||||||||+|+|+.+|++|+|.++|.. ..++||+|++.
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~ 82 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDA 82 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCc
Confidence 5899999999999999999999999999999999999999999999999999999999998753 47999999999
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcc
Q 006275 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (652)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (652)
++|..||+||+..+.... .....+..+++.++++.+|+. .
T Consensus 83 LlPW~Tv~~NV~l~l~~~---------------------------------------~~~~~e~~~~a~~~L~~VgL~-~ 122 (248)
T COG1116 83 LLPWLTVLDNVALGLELR---------------------------------------GKSKAEARERAKELLELVGLA-G 122 (248)
T ss_pred ccchhhHHhhheehhhcc---------------------------------------ccchHhHHHHHHHHHHHcCCc-c
Confidence 999999999996432110 012223345778899999997 6
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH----HccCCCeEEEEecCHHHHHhhcCeEE
Q 006275 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLCTKIV 327 (652)
Q Consensus 252 ~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~----L~~~g~tvIivsHd~~~l~~~~d~ii 327 (652)
..++++.+|||||||||+|||||+.+|+||||||||++||+.|+..+.+. +++.++|||+||||++++-.++|||+
T Consensus 123 ~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRiv 202 (248)
T COG1116 123 FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVV 202 (248)
T ss_pred hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEE
Confidence 88999999999999999999999999999999999999999999887665 45678999999999999999999999
Q ss_pred EEcCC
Q 006275 328 ETEMG 332 (652)
Q Consensus 328 ~l~~G 332 (652)
+|.++
T Consensus 203 vl~~~ 207 (248)
T COG1116 203 VLSNR 207 (248)
T ss_pred EecCC
Confidence 99984
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=381.92 Aligned_cols=211 Identities=27% Similarity=0.410 Sum_probs=187.5
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v 166 (652)
+|+++|+||.|+++++++|+||+|++||+++++||+||||||+||+|.++++|++|+|.++|.+ .+||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 4899999999999999999999999999999999999999999999999999999999999864 369999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
-|...++|++||.|||..... ....+....++++.++|+.+
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~---------------------------------------L~~w~k~~i~~r~~ELl~lv 121 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPK---------------------------------------LLGWDKERIKKRADELLDLV 121 (309)
T ss_pred hhhcccCCCccHHHHHHhhhh---------------------------------------hcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999963210 00123445678899999999
Q ss_pred CCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHh
Q 006275 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~ 321 (652)
|+++ ++.+|++++|||||+|||.+||||+.+|+|||+||||++|||-++..|.+.+ ++.++|||+||||++++..
T Consensus 122 gL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k 201 (309)
T COG1125 122 GLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK 201 (309)
T ss_pred CCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh
Confidence 9986 5999999999999999999999999999999999999999999999998765 3579999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
++|||++|++|++..| +++++++..
T Consensus 202 Ladri~vm~~G~i~Q~-~~P~~il~~ 226 (309)
T COG1125 202 LADRIAVMDAGEIVQY-DTPDEILAN 226 (309)
T ss_pred hhceEEEecCCeEEEe-CCHHHHHhC
Confidence 9999999999998655 556665543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-48 Score=388.67 Aligned_cols=209 Identities=33% Similarity=0.533 Sum_probs=186.6
Q ss_pred ceEEEeEEEEeCC-----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------- 160 (652)
+|++++++|.|.. ..+|+||||+|++||++||||.+|||||||+|+|.++..|++|+|.++|.+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 4899999999975 359999999999999999999999999999999999999999999999843
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
.+|||++|++.++.+.||++|++..+. ....+..+.+++
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLe---------------------------------------iag~~k~ei~~R 121 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLE---------------------------------------LAGVPKAEIKQR 121 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHh---------------------------------------hcCCCHHHHHHH
Confidence 369999999999889999999964321 011344567889
Q ss_pred HHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 006275 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (652)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsH 314 (652)
+.++|+.+|++ +..++++.+|||||||||+|||||+.+|+|||.|||||+|||++.+.+.++|+ +.|.||++|||
T Consensus 122 V~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 122 VAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred HHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 99999999998 78999999999999999999999999999999999999999999999988874 57999999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
.++.+.++||||.+|++|++ +..|+..+...
T Consensus 201 Em~Vvk~ic~rVavm~~G~l-vE~G~v~~vF~ 231 (339)
T COG1135 201 EMEVVKRICDRVAVLDQGRL-VEEGTVSEVFA 231 (339)
T ss_pred hHHHHHHHhhhheEeeCCEE-EEeccHHHhhc
Confidence 99999999999999999998 57787766554
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=374.25 Aligned_cols=218 Identities=23% Similarity=0.406 Sum_probs=189.4
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-------------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------- 161 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~------------- 161 (652)
.+.|++++++++|+++.|++||||+|++||+++|+||+|||||||||+|.|+++|++|+|.++|.+.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 4579999999999999999999999999999999999999999999999999999999999998642
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
++|+++|.-.++.++||+||+...+.+. ..++...+++.+..
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~--------------------------------------~~lp~~~i~~lv~~ 127 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREH--------------------------------------TKLPESLIRELVLM 127 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhh--------------------------------------ccCCHHHHHHHHHH
Confidence 5999999999999999999996433221 11233344555566
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (652)
-|+.+|+.....++++++|||||++|++||||++.||++|++||||+||||.+...+.++++ +.|.|+|+||||++
T Consensus 128 KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 128 KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred HHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 68899998766999999999999999999999999999999999999999999877766653 46999999999999
Q ss_pred HHHhhcCeEEEEcCCeEEEecCChHHHHHHHHHH
Q 006275 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~ 351 (652)
.+..+||||+++.+|++ .+.|+++++......|
T Consensus 208 s~~~i~Drv~~L~~gkv-~~~Gt~~el~~sd~P~ 240 (263)
T COG1127 208 SLLTIADRVAVLADGKV-IAEGTPEELLASDDPW 240 (263)
T ss_pred HHHhhhceEEEEeCCEE-EEeCCHHHHHhCCCHH
Confidence 99999999999999998 6889988876644433
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=373.20 Aligned_cols=209 Identities=27% Similarity=0.441 Sum_probs=186.0
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------ccee
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (652)
||+++||++.|+++.+++++||+|++||+++++|||||||||+||+|.++++|++|+|.++|+++. .+|+
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 589999999999999999999999999999999999999999999999999999999999998863 3565
Q ss_pred cccccccCCCCCCHHHHHHHhhh--hcc----HHHHHHHHhhCCCCh-hhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~--~~~----~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
-| ...++|++||.+|+..... .|. ..++.++|+.+|+.. ++.+++|++|||||||||.+||||+.+|+|||
T Consensus 81 iQ--qigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 81 IQ--QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred hh--hcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 54 4578999999999997643 343 345789999999975 58999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcCCc
Q 006275 567 LDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFSPF 635 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~~~ 635 (652)
||||+++||+-++..+++.+.+ +++|||+||||++++.+++|||.+|++|+++.| +.+++++...+..
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~-~~P~~il~~Pan~ 230 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY-DTPDEILANPAND 230 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe-CCHHHHHhCccHH
Confidence 9999999999999999998764 467999999999999999999999999999865 7777766555443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=379.91 Aligned_cols=213 Identities=27% Similarity=0.413 Sum_probs=178.8
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------ceEEEEec
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQ 168 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------~~i~~v~Q 168 (652)
..|+++|++++|++.++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.|.. .+||||||
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 46999999999997689999999999999999999999999999999999999999999998753 47999999
Q ss_pred cCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 169 EFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 169 ~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
... ..+..||+|-++.+-.......+ .... .-.+.+.++|+.+
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~----------------------------------~~~~-~d~~~v~~aL~~V 127 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFR----------------------------------RLNK-KDKEKVDEALERV 127 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccc----------------------------------cccH-HHHHHHHHHHHHc
Confidence 653 33567999988643211100000 0111 1256788899999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (652)
|+. +..++++.+|||||+|||.|||||+++|++|||||||+|+|+.++..+.++|+ +.|+|||+||||++.+.++|
T Consensus 128 gm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 128 GME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYF 206 (254)
T ss_pred Cch-hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhC
Confidence 997 79999999999999999999999999999999999999999999999988863 45999999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
|+|+.|+... .+.|+..++..
T Consensus 207 D~vi~Ln~~~--~~~G~~~~~~~ 227 (254)
T COG1121 207 DRVICLNRHL--IASGPPEEVLT 227 (254)
T ss_pred CEEEEEcCee--EeccChhhccC
Confidence 9999998655 46787766543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=383.00 Aligned_cols=212 Identities=27% Similarity=0.418 Sum_probs=180.7
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v 166 (652)
.++++|++++|+++++++|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.++|.+ .++|||
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 4899999999999999999999999999999999999999999999999999999999999864 269999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
||.+...+..||+|.+..+-.... ..+. ....+-++.+.+.|+.+
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~----------~~~~-------------------------~~~~~D~~~v~~aL~~~ 126 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHL----------GLFG-------------------------RPSKEDEEIVEEALELL 126 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCccc----------cccc-------------------------CCCHhHHHHHHHHHHHh
Confidence 999888788999998853210000 0000 00111233567788999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~ 322 (652)
|+. +..+|++.+|||||||||.|||||+++|+||||||||++||......++++++ +.|+|||+|.||++++.++
T Consensus 127 ~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 127 GLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred CcH-HHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 996 78999999999999999999999999999999999999999999999988874 4689999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|||++.|++|++ ...|.+.+.+
T Consensus 206 ad~~i~lk~G~i-~a~G~p~evl 227 (258)
T COG1120 206 ADHLILLKDGKI-VAQGTPEEVL 227 (258)
T ss_pred CCEEEEEECCeE-EeecCcchhc
Confidence 999999999998 4677766554
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=374.31 Aligned_cols=206 Identities=31% Similarity=0.495 Sum_probs=182.9
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec-------ccceecc
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQ 495 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~-------~~~~~~~ 495 (652)
.+|+++|+++.|+++++|+||||+|++|++++|+||||||||||+|+|+|+++|.+|+|.+.|.+. ..+|++|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 469999999999866899999999999999999999999999999999999999999999988753 4679998
Q ss_pred cccccCCCCCCHHHHHHHhhhh----------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 496 NQAEALDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
.......+..||+|.+..+... .+.+.+.++|+++|+. ++.++++.+|||||+|||.|||||+++|++|
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll 161 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLL 161 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence 7655667789999999876321 1236789999999995 8999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||||+|+|+.++..++++|.++ +.|||+||||+..+..+||+|+.|++..+ ..|++++..+.
T Consensus 162 lLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~--~~G~~~~~~~~ 228 (254)
T COG1121 162 LLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI--ASGPPEEVLTE 228 (254)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeE--eccChhhccCH
Confidence 999999999999999999999765 56999999999999999999999976544 56888877654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=377.45 Aligned_cols=203 Identities=32% Similarity=0.512 Sum_probs=180.5
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------ccee
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (652)
+++++|++++|+++++++|+||+|++||+++|+||||||||||||+|+|+++|.+|+|.++|+++. .+|+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999998763 2567
Q ss_pred cccccccCCCCCCHHHHHHHhhh-------hcc---HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 494 EQNQAEALDLDKTVLETVAEAAE-------DWR---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~-------~~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
+|.. ...+.+||+|.+..+.. .+. .+.+.++|+.+|+ .++.++.+.+|||||||||.|||||+++|+
T Consensus 82 pQ~~--~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~-~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 82 PQSP--SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGL-EHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred ccCC--CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCc-HHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 7654 45678899999987632 122 2347788999999 578999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||+|||||++||+.++..+++.++++ +.|||+|.||++.+.++||++++|++|++. ..|.+++.+.
T Consensus 159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~-a~G~p~evlT 228 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV-AQGTPEEVLT 228 (258)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-eecCcchhcC
Confidence 99999999999999999999999866 369999999999999999999999999998 4688776543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=363.79 Aligned_cols=213 Identities=31% Similarity=0.432 Sum_probs=188.4
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-----------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------- 490 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------- 490 (652)
+++|++++|+++||++.|++|+||+|++||+++|+||||||||||||+|.|+++|++|+|.++|.++..
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 567999999999999999999999999999999999999999999999999999999999999988631
Q ss_pred --ceecccccccCCCCCCHHHHHHHhhhhc---c----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccC
Q 006275 491 --NYFEQNQAEALDLDKTVLETVAEAAEDW---R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (652)
Q Consensus 491 --~~~~~~~~~~~~~~~tv~e~~~~~~~~~---~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~ 561 (652)
+..+ |...++.++||+||+.+....+ . .+-+..-|+.+|+.....+++|++|||||++|++||||++.+
T Consensus 86 r~GvlF--Q~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 86 RMGVLF--QQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred heeEEe--eccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 2333 3456889999999999854322 1 123555689999987778999999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcCCccc
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFSPFLL 637 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~~~~~ 637 (652)
|+||++||||+||||-+...+.++|++. +.|+|+||||++.+..+|||++++.+|+|. +.|++++..+...|..+
T Consensus 164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~sd~P~v~ 242 (263)
T COG1127 164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLASDDPWVR 242 (263)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHhCCCHHHH
Confidence 9999999999999999999999988754 569999999999999999999999999998 67999999888887654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=369.00 Aligned_cols=191 Identities=36% Similarity=0.507 Sum_probs=172.1
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec-----ccceecccc
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQ 497 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~-----~~~~~~~~~ 497 (652)
.+++++++++.|+...+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|.++ ..+|++|+
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~- 80 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE- 80 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc-
Confidence 358999999999999999999999999999999999999999999999999999999999999876 22466664
Q ss_pred cccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 498 AEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 498 ~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
..++|.+||.+|+.+..... ..+.+.++|+.+|+. +..+++|++|||||||||+|||||+.+|+|||||||+
T Consensus 81 -~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 81 -DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred -CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 56899999999999875431 234688999999994 7899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEeCC
Q 006275 572 NHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGS 616 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~drvi~l~~g 616 (652)
++||..++..|++.+.+ .+.|||+||||++++-.++|||++|.++
T Consensus 159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 159 GALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999987754 3579999999999999999999999984
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-46 Score=365.41 Aligned_cols=197 Identities=28% Similarity=0.465 Sum_probs=169.6
Q ss_pred eEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------
Q 006275 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (652)
Q Consensus 98 i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------- 160 (652)
++++|+++.|+. ..+|+++||+|++||+++|+||+||||||||++|.|+..|++|.|.++|.+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 679999999954 369999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..|||++|++.+.+.+||.||+.....- . ........+++
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~---------------~------------------------~~~~~~~~~~~ 122 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLI---------------A------------------------GKSAGRRKRAA 122 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHH---------------c------------------------CCChhHHHHHH
Confidence 2599999999999999999999632110 0 00111234566
Q ss_pred HHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecC
Q 006275 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHD 315 (652)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd 315 (652)
.++++.+|+.+...++++.+|||||||||||||||+.+|++||.||||.+||.++.+.+.++|+ +.|+|||+||||
T Consensus 123 ~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 123 EELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred HHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 7888999997555558899999999999999999999999999999999999999999988874 458999999999
Q ss_pred HHHHHhhcCeEEEEcCCeE
Q 006275 316 RAFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~ 334 (652)
.+.+ .+|||++.+.+|++
T Consensus 203 ~~lA-~~~dr~i~l~dG~~ 220 (226)
T COG1136 203 PELA-KYADRVIELKDGKI 220 (226)
T ss_pred HHHH-HhCCEEEEEeCCee
Confidence 9988 58999999999984
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=363.56 Aligned_cols=208 Identities=30% Similarity=0.506 Sum_probs=184.8
Q ss_pred cEEEEEeeeeEeCCee----eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc--------
Q 006275 423 SVVTIKNLEFGYEDRL----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-------- 490 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-------- 490 (652)
++++++|+++.|+.+. ++++|||+|.+||++||+|++|||||||.++|+|+.+|++|+|.++|.++.+
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4799999999999776 9999999999999999999999999999999999999999999999976533
Q ss_pred ---ceecccccccCCCCCCHHHHHHHhhhh----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 491 ---NYFEQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 491 ---~~~~~~~~~~~~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
.+++|++...+.|..||.+.+...... ....++.++|+.+|+....++++|.+|||||+||+||||||+.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 356777777889999999998876542 2234589999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+||||||||+||...+..+.+++.+. +.|+|+||||+..+..+||||++|++|++++. ++..+....
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~-~~~~~l~~~ 232 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI-GPTEELLSH 232 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe-echhhhhcC
Confidence 99999999999999999999988654 56999999999999999999999999999863 555554443
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=361.57 Aligned_cols=206 Identities=27% Similarity=0.490 Sum_probs=178.4
Q ss_pred CceEEEeEEEEeCCee----eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC-----------C
Q 006275 96 SGVKLENISKSYKGVT----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS-----------N 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~----vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~-----------~ 160 (652)
.+|+++|+++.|++.. +|++|||+|.+||++||+|++|||||||+++|+|+.+|++|+|.++|. .
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 3699999999998876 999999999999999999999999999999999999999999999984 2
Q ss_pred ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 ~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..|.+|+|+| .+.|..||++-+...+.. ......+++
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~-----------------------------------------~~~~~~~~~ 120 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRP-----------------------------------------HGLSKSQQR 120 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhcc-----------------------------------------CCccHHHHH
Confidence 3599999998 455677888776532210 011233455
Q ss_pred HHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 006275 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (652)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsH 314 (652)
+.++++.+|+++.+++|++.+|||||+|||||||||..+|++||||||||+||+.....+.++|. +++.|+|+|||
T Consensus 121 i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH 200 (252)
T COG1124 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200 (252)
T ss_pred HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC
Confidence 88999999999999999999999999999999999999999999999999999999999998873 46889999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecCChHH
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g~~~~ 343 (652)
|+..+.++||||++|++|.++ ..+.-.+
T Consensus 201 dl~~v~~~cdRi~Vm~~G~iv-E~~~~~~ 228 (252)
T COG1124 201 DLALVEHMCDRIAVMDNGQIV-EIGPTEE 228 (252)
T ss_pred cHHHHHHHhhheeeeeCCeEE-Eeechhh
Confidence 999999999999999999984 4444333
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=388.45 Aligned_cols=212 Identities=29% Similarity=0.442 Sum_probs=185.9
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEe
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~ 167 (652)
+.|+++|++++|++..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.+ ..||+|+
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 46999999999999999999999999999999999999999999999999999999999999853 3699999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|+..++|.+||+|||..+++.. ......++.+++.++++.++
T Consensus 84 Q~YALFPHltV~~NVafGLk~~--------------------------------------~~~~~~~i~~rv~e~L~lV~ 125 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVR--------------------------------------KKLKKAEIKARVEEALELVG 125 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhc--------------------------------------CCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999997543200 00122345678889999999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhc
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~ 323 (652)
+. +..+|++.+|||||||||||||||+.+|++||||||+|+||..-+..+...| ++.|+|.|+||||.+++..++
T Consensus 126 L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~ms 204 (352)
T COG3842 126 LE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMS 204 (352)
T ss_pred ch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhc
Confidence 97 6899999999999999999999999999999999999999999888776544 567999999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
|||++|++|++. ..|++.++...
T Consensus 205 DrI~Vm~~G~I~-Q~gtP~eiY~~ 227 (352)
T COG3842 205 DRIAVMNDGRIE-QVGTPEEIYER 227 (352)
T ss_pred cceEEccCCcee-ecCCHHHHhhC
Confidence 999999999984 55776665543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=370.75 Aligned_cols=202 Identities=29% Similarity=0.418 Sum_probs=178.6
Q ss_pred EEEEEeeeeEeCC-----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
||++++|++.|.. ..+++||||+|++||++||+|+||||||||+|+|.++.+|++|+|.++|.++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 5899999999975 46899999999999999999999999999999999999999999999998763
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHc
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~ 559 (652)
.++++|+ .++..++||++|+++..... ...++.++|+.+|+. +..+++|.+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQh--FnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQH--FNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEecc--ccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHh
Confidence 2345544 56777899999999865422 235688999999995 7899999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
.+|+|||+|||||+|||++.+.+.++|++ ++.||++|||.|+.+.++||||.+|++|++++ .|+..+.+
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE-~G~v~~vF 230 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE-EGTVSEVF 230 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE-eccHHHhh
Confidence 99999999999999999999999998875 45699999999999999999999999999986 47666554
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=383.94 Aligned_cols=209 Identities=29% Similarity=0.440 Sum_probs=183.8
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEe
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~ 167 (652)
..|+++|+++.|++..+++++||+|+.||+++|+||||||||||||+|+|+.+|++|+|.++|.+ ..||||+
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 35999999999988769999999999999999999999999999999999999999999999853 4799999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|++.++|.+||+||+...++. ..++..++++++++..+.++
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~---------------------------------------~~~~k~ei~~rV~eva~~L~ 122 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKL---------------------------------------RGVPKAEIDKRVKEVAKLLG 122 (338)
T ss_pred CCccccCCCcHHHHhhhhhhh---------------------------------------CCCchHHHHHHHHHHHHHcC
Confidence 999999999999999754321 01233466788999999999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhc
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~ 323 (652)
+. ++++|++.+|||||||||||||||+.+|+++|||||+|+||+..+..+...+ ++.|.|+|+||||..++..++
T Consensus 123 l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtla 201 (338)
T COG3839 123 LE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA 201 (338)
T ss_pred Ch-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhC
Confidence 97 7899999999999999999999999999999999999999999887776554 457899999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|||++|++|.+. .-|++.+..
T Consensus 202 dri~Vm~~G~i~-Q~g~p~ely 222 (338)
T COG3839 202 DRIVVMNDGRIQ-QVGTPLELY 222 (338)
T ss_pred CEEEEEeCCeee-ecCChHHHh
Confidence 999999999984 446655543
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=370.25 Aligned_cols=209 Identities=29% Similarity=0.466 Sum_probs=182.2
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC-----------CceEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS-----------NMKIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~-----------~~~i~~ 165 (652)
+|+++|+++.|+..++++|||++|+.||++||+|||||||||||++|+|++.|++|.|.++|. ..+|||
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 489999999999999999999999999999999999999999999999999999999999875 247999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
|+|+..+++.+||.+||..+..-. ....+...+..++.++|+.
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~-------------------------------------~~~p~~~~~r~rv~elL~l 124 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVR-------------------------------------KERPSEAEIRARVEELLRL 124 (345)
T ss_pred EEechhhcccchHHhhhhhccccc-------------------------------------ccCCChhhHHHHHHHHHHH
Confidence 999999999999999997543210 0011223556788889999
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~ 321 (652)
+.+. ...++++.+|||||||||||||||+.+|++||||||+++||+.-+..|..+| .+.|.|+|+||||.+++.+
T Consensus 125 vqL~-~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 125 VQLE-GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE 203 (345)
T ss_pred hccc-chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh
Confidence 9986 6889999999999999999999999999999999999999999887776665 4569999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+||||++|++|++. ..|+.++.
T Consensus 204 ladrvvvl~~G~Ie-qvg~p~ev 225 (345)
T COG1118 204 LADRVVVLNQGRIE-QVGPPDEV 225 (345)
T ss_pred hcceEEEecCCeee-eeCCHHHH
Confidence 99999999999984 44665554
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=354.35 Aligned_cols=216 Identities=24% Similarity=0.413 Sum_probs=183.1
Q ss_pred CceEEEeEEEEe-CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------c
Q 006275 96 SGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (652)
Q Consensus 96 ~~i~v~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------~ 161 (652)
.+|+++|+++.| +++++|++|||+|++||+++|||++|||||||||+|.|+.+|++|+|.++|.. .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 369999999999 66789999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
+|||++|.+.+.+..+|.+|++.+.-.....+ ...+. +-..+-...+-+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~------~slfg-------------------------lfsk~dk~~Al~ 130 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTW------RSLFG-------------------------LFSKEDKAQALD 130 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHH------HHHhC-------------------------CCCHHHHHHHHH
Confidence 69999999999999999999975432211110 00000 111122445667
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (652)
.|+++|+. +...++..+|||||+|||+|||||+++|+|+|.|||++.|||.+.+.+++.|+ +.|.|||+..|+++
T Consensus 131 aLervgi~-~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 131 ALERVGIL-DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HHHHcCcH-HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 89999997 56677789999999999999999999999999999999999999999998885 46999999999999
Q ss_pred HHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
.+.++||||+-|++|++ +|+|+.++.
T Consensus 210 lA~~Y~~Riigl~~G~i-vfDg~~~el 235 (258)
T COG3638 210 LAKKYADRIIGLKAGRI-VFDGPASEL 235 (258)
T ss_pred HHHHHHhhheEecCCcE-EEeCChhhh
Confidence 99999999999999998 699987664
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=417.14 Aligned_cols=340 Identities=22% Similarity=0.284 Sum_probs=243.4
Q ss_pred cHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHc---cCCCe
Q 006275 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVP 308 (652)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~---~~g~t 308 (652)
++..++. .|+.+|+.....++++.+|||||+|||+||+||+.+| ++|||||||+|||+..++.|.++|+ +.|.|
T Consensus 465 ~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~T 543 (943)
T PRK00349 465 EIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNT 543 (943)
T ss_pred HHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 3445554 6888999632379999999999999999999999997 9999999999999999999988764 56899
Q ss_pred EEEEecCHHHHHhhcCeEEEE------cCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcc
Q 006275 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLIN-RLGAGAN 381 (652)
Q Consensus 309 vIivsHd~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 381 (652)
||+|+|+++++. .||+|++| ++|++ .+.|+++++...... +.. .+.+
T Consensus 544 VIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~i-v~~g~~~e~~~~~~~---------------------l~~~~l~~--- 597 (943)
T PRK00349 544 LIVVEHDEDTIR-AADYIVDIGPGAGVHGGEV-VASGTPEEIMKNPNS---------------------LTGQYLSG--- 597 (943)
T ss_pred EEEEeCCHHHHH-hCCEEEEeccccCCCCCEE-eeccCHHHHhcChhh---------------------eeehhhcc---
Confidence 999999999986 69999999 77776 678887665321100 000 0000
Q ss_pred ccchhHHHHHHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCC
Q 006275 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (652)
Q Consensus 382 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGs 461 (652)
+. ....+.. + .....+.|+++|++. ..|+++||+|+.|++++|+|+|||
T Consensus 598 --~~--------------~~~~~~~--------~--~~~~~~~L~v~~l~~-----~~L~~isl~Ip~GeivgVtGvsGS 646 (943)
T PRK00349 598 --KK--------------KIEVPKE--------R--RKGNGKFLKLKGARE-----NNLKNVDVEIPLGKFTCVTGVSGS 646 (943)
T ss_pred --cc--------------ccccccc--------c--cCCCcceEEecCCcc-----CCcCceEEEEeCCCEEEEEcCCCC
Confidence 00 0000000 0 001234689999862 359999999999999999999999
Q ss_pred cHHHHHHHHh---------CCCCCCee------------EEEECceecc-------------------------------
Q 006275 462 GKSTLLKLIM---------GLEKPRGG------------EVLLGEHNVL------------------------------- 489 (652)
Q Consensus 462 GKSTLl~~l~---------g~~~p~~G------------~i~~~g~~~~------------------------------- 489 (652)
|||||++-+. +...+..+ .|.++..++.
T Consensus 647 GKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g 726 (943)
T PRK00349 647 GKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARG 726 (943)
T ss_pred CHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCceEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccC
Confidence 9999998764 11111111 1222221110
Q ss_pred --cceecccc------------------------------------------------cccCCCCCCHHHHHHHhhhhcc
Q 006275 490 --PNYFEQNQ------------------------------------------------AEALDLDKTVLETVAEAAEDWR 519 (652)
Q Consensus 490 --~~~~~~~~------------------------------------------------~~~~~~~~tv~e~~~~~~~~~~ 519 (652)
+..|..|. ...-..++|+.|++.+......
T Consensus 727 ~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~ 806 (943)
T PRK00349 727 YKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPK 806 (943)
T ss_pred CCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCccccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchh
Confidence 00111110 0000113566666665433333
Q ss_pred HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceE
Q 006275 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTV 593 (652)
Q Consensus 520 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv 593 (652)
.....+.|..+|+....+++++.+||||||||+.||++|+.+| +++||||||+|||+..+..+.++|+++ +.||
T Consensus 807 i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TV 886 (943)
T PRK00349 807 IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTV 886 (943)
T ss_pred hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 3455678999999533468999999999999999999999999 999999999999999999999998865 4699
Q ss_pred EEEecCHHHHHhhccEEEEE------eCCEEEeecCChhhHhhhcC
Q 006275 594 ITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNVCFTSFS 633 (652)
Q Consensus 594 i~vsHd~~~i~~~~drvi~l------~~g~i~~~~g~~~~~~~~~~ 633 (652)
|+|||+++++. .||+|+.| ++|+++ +.|++++......
T Consensus 887 IiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv-~~Gt~~el~~~~~ 930 (943)
T PRK00349 887 VVIEHNLDVIK-TADWIIDLGPEGGDGGGEIV-ATGTPEEVAKVEA 930 (943)
T ss_pred EEEecCHHHHH-hCCEEEEecCCcCCCCCEEE-EeCCHHHHHhCcc
Confidence 99999999986 69999999 689987 5688888765443
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=381.48 Aligned_cols=206 Identities=28% Similarity=0.451 Sum_probs=183.0
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceec
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFE 494 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~ 494 (652)
+.++++||+++|++..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++. .++++
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 4699999999999999999999999999999999999999999999999999999999999999873 24555
Q ss_pred ccccccCCCCCCHHHHHHHhhh-hc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEE
Q 006275 495 QNQAEALDLDKTVLETVAEAAE-DW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~-~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlL 567 (652)
| +..++|++||.+||+++.. .+ ...++.++|+.+++. ++.+++|.+|||||||||||||||+.+|++|||
T Consensus 84 Q--~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 84 Q--SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred c--CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 5 4679999999999999865 11 124688999999995 689999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 568 DEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 568 DEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
|||.|+||..-+..|+..+++ .+.|.|+||||.+++..++|||++|++|+|.. .|.++++....
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q-~gtP~eiY~~P 228 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ-VGTPEEIYERP 228 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee-cCCHHHHhhCc
Confidence 999999999999888877654 46799999999999999999999999999975 47777655443
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=376.36 Aligned_cols=208 Identities=27% Similarity=0.436 Sum_probs=179.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v 166 (652)
.+|+++|++|+|++..+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ .+|||+
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 46999999999998889999999999999999999999999999999999999999999998753 359999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++.+|++||+... ... . ..+..+...++.++++.+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~-~~~--------------~------------------------~~~~~~~~~~~~~~l~~~ 126 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVF-GRY--------------F------------------------GLSAAAARALVPPLLEFA 126 (306)
T ss_pred eccCcCCCCCcHHHHHHHH-HHH--------------c------------------------CCCHHHHHHHHHHHHHHc
Confidence 9999888889999998521 000 0 011112334566788888
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~ 323 (652)
|+. +..++++.+||||||||++|||||+++|++|||||||+|||+.++.++.++|++ .|+|||++||+++++..+|
T Consensus 127 ~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~ 205 (306)
T PRK13537 127 KLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLC 205 (306)
T ss_pred CCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 986 567889999999999999999999999999999999999999999999988753 5899999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|||++|++|++ .+.|+.+++
T Consensus 206 d~i~il~~G~i-~~~g~~~~l 225 (306)
T PRK13537 206 DRLCVIEEGRK-IAEGAPHAL 225 (306)
T ss_pred CEEEEEECCEE-EEECCHHHH
Confidence 99999999998 467876554
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=361.20 Aligned_cols=210 Identities=28% Similarity=0.447 Sum_probs=182.7
Q ss_pred CceEEEeEEEEeCCe-eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceE
Q 006275 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i 163 (652)
.++++++++|+|++. ++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ .+|
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 358999999999776 89999999999999999999999999999999999999999999988753 359
Q ss_pred EEEeccCccC-CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 164 AFLSQEFEVS-MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 164 ~~v~Q~~~~~-~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|||+|+|..+ +..||.+++..+..+ . .++..++++++.+.
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n-----------------~----------------------g~~~~e~~~rv~~~ 122 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLEN-----------------L----------------------GLPREEIEERVAEA 122 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhh-----------------c----------------------CCCHHHHHHHHHHH
Confidence 9999999654 466999998643211 0 13334567888999
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (652)
++.+|+. +..++++.+|||||||||+||.+|+.+|++|||||||++||+.+++.+.+++++ .|+|||++|||+++
T Consensus 123 l~~vgl~-~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 123 LELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred HHHcCch-hhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 9999997 569999999999999999999999999999999999999999999999887743 37899999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
+..+||++++|++|++ .++|.+.++..
T Consensus 202 ~~~~ad~v~vl~~G~i-~~~g~p~~i~~ 228 (235)
T COG1122 202 VLEYADRVVVLDDGKI-LADGDPAEIFN 228 (235)
T ss_pred HHhhCCEEEEEECCEE-eecCCHHHHhh
Confidence 9999999999999998 57887655543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=379.87 Aligned_cols=208 Identities=27% Similarity=0.454 Sum_probs=179.3
Q ss_pred ceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------
Q 006275 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------ 160 (652)
+|+++|++++|++ .++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4899999999952 469999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
.+|||++|++.+++..||+||+...... ...+..+..+++
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~v 121 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEIKRKV 121 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHH
Confidence 2599999999988889999998632110 001112334567
Q ss_pred HHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006275 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (652)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (652)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+|||+
T Consensus 122 ~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 122 TELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7889999996 678999999999999999999999999999999999999999999999888753 48999999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
++.+.++||+|++|++|++. ..|+..++.
T Consensus 201 ~~~v~~~~d~v~vl~~G~iv-~~g~~~~v~ 229 (343)
T TIGR02314 201 MDVVKRICDCVAVISNGELI-EQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999984 678776654
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=338.66 Aligned_cols=202 Identities=28% Similarity=0.466 Sum_probs=178.6
Q ss_pred ceEEEeEEEEeCCee-eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------ce
Q 006275 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------~~ 162 (652)
+|+++||++.|++.+ +|+||||+|++||++.|+||+|||||||||+|.+..+|++|+|.++|.+ .+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 489999999996544 9999999999999999999999999999999999999999999998753 36
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
||+|+|++.+.+..||+||+..++.- ......++.+++.++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v---------------------------------------~G~~~~~i~~rV~~~ 121 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRV---------------------------------------IGKPPREIRRRVSEV 121 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhc---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999999999999998643210 012344667889999
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFL 319 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l 319 (652)
|+.+|+. +-.+..+.+|||||||||+||||++.+|++||.||||.+|||+....+++++ .+.|.|||++|||.+.+
T Consensus 122 L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 122 LDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred HHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 9999997 4567778999999999999999999999999999999999999999888776 46799999999999999
Q ss_pred HhhcCeEEEEcCCeEEEec
Q 006275 320 DQLCTKIVETEMGVSRTYE 338 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~ 338 (652)
+++-.|++.+++|++....
T Consensus 201 ~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 201 NRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HhccCcEEEEeCCEEEecc
Confidence 9999999999999986443
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-44 Score=361.75 Aligned_cols=207 Identities=29% Similarity=0.435 Sum_probs=175.5
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------ceEE
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKIA 164 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------~~i~ 164 (652)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 478999999988889999999999999999999999999999999999999999999998732 2499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+++..||.||+....... . .........++.++++
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~---------------~-----------------------~~~~~~~~~~~~~~l~ 122 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREH---------------T-----------------------RLSEEEIREIVLEKLE 122 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhc---------------c-----------------------CCCHHHHHHHHHHHHH
Confidence 9999998877889999985321000 0 0011122345667888
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~ 320 (652)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||+||||++++.
T Consensus 123 ~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 123 AVGLR-GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred HcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 89986 566888999999999999999999999999999999999999999999888753 4889999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
.+||+|++|++|++ .+.|+++++
T Consensus 202 ~~~d~v~~l~~G~i-~~~g~~~~~ 224 (235)
T cd03261 202 AIADRIAVLYDGKI-VAEGTPEEL 224 (235)
T ss_pred HhcCEEEEEECCeE-EEecCHHHH
Confidence 99999999999998 466776554
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=380.23 Aligned_cols=208 Identities=26% Similarity=0.401 Sum_probs=180.6
Q ss_pred ceEEEeEEEEe-CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEe
Q 006275 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (652)
Q Consensus 97 ~i~v~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~ 167 (652)
+|+++|++++| +++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..||||+
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999 77789999999999999999999999999999999999999999999998753 3699999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|++.+++.+||+||+...+.. ......+...++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~g 123 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKI---------------------------------------RGMPKAEIEERVAEAARILE 123 (356)
T ss_pred CCccccCCCCHHHHHHhHHhh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999998999999998643210 00111223456778899999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~ 323 (652)
+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+ +.|.|+|+||||.+++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~ 202 (356)
T PRK11650 124 LE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLA 202 (356)
T ss_pred Ch-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 96 68899999999999999999999999999999999999999999999887764 35899999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+|++|++|++. ..|+++++.
T Consensus 203 D~i~vl~~G~i~-~~g~~~~~~ 223 (356)
T PRK11650 203 DRVVVMNGGVAE-QIGTPVEVY 223 (356)
T ss_pred CEEEEEeCCEEE-EECCHHHHH
Confidence 999999999984 567766653
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=377.88 Aligned_cols=210 Identities=24% Similarity=0.383 Sum_probs=182.1
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEE
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFL 166 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v 166 (652)
++.|+++|++++|++..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.. ..||||
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 346999999999998889999999999999999999999999999999999999999999998742 469999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++.+||+||+...+... ..+..+..+++.++++.+
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~---------------------------------------~~~~~~~~~~v~~~l~~~ 124 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKML---------------------------------------GVPKEERKQRVKEALELV 124 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHc---------------------------------------CCCHHHHHHHHHHHHHHc
Confidence 99999989999999986432100 011123345677888999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~ 322 (652)
|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+ +.|+|+|+||||.+++..+
T Consensus 125 gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l 203 (351)
T PRK11432 125 DLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV 203 (351)
T ss_pred CCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 996 57899999999999999999999999999999999999999999999987764 3589999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
||+|++|++|++. ..|+.+++.
T Consensus 204 aD~i~vm~~G~i~-~~g~~~~~~ 225 (351)
T PRK11432 204 SDTVIVMNKGKIM-QIGSPQELY 225 (351)
T ss_pred CCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999985 567766543
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=356.64 Aligned_cols=197 Identities=26% Similarity=0.444 Sum_probs=168.6
Q ss_pred ceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------c
Q 006275 97 GVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (652)
Q Consensus 97 ~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------~ 161 (652)
+|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 3789999999964 469999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
.++|++|++.+++..|+.||+...... . ........+++.+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~ 121 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRI---------------I------------------------GVPPRDANERVSA 121 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHH
Confidence 599999999887788999998532100 0 0011122345667
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~ 318 (652)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .++|||+||||+++
T Consensus 122 ~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 122 ALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 88889986 567888999999999999999999999999999999999999999999888753 48899999999999
Q ss_pred HHhhcCeEEEEcCCe
Q 006275 319 LDQLCTKIVETEMGV 333 (652)
Q Consensus 319 l~~~~d~ii~l~~G~ 333 (652)
+..+||+|++|++|+
T Consensus 201 ~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 201 VETYRHRTLTLSRGR 215 (216)
T ss_pred HHHhCCEEEEEeCCc
Confidence 999999999999886
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=355.38 Aligned_cols=198 Identities=32% Similarity=0.470 Sum_probs=170.2
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q~ 169 (652)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 478999999988889999999999999999999999999999999999999999999998743 259999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+++..|+++|+....... ........+++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLR---------------------------------------GVPKAEIRARVRELLELVGLE 121 (213)
T ss_pred hhhccCCcHHHHHHhHHHHc---------------------------------------CCCHHHHHHHHHHHHHHcCCh
Confidence 98877889999985321100 000011234566778888986
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (652)
+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .|+|||++|||++++.++||+
T Consensus 122 -~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 122 -GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred -hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 567888999999999999999999999999999999999999999999988753 488999999999999999999
Q ss_pred EEEEcCCeEE
Q 006275 326 IVETEMGVSR 335 (652)
Q Consensus 326 ii~l~~G~~~ 335 (652)
|++|++|++.
T Consensus 201 v~~l~~G~i~ 210 (213)
T cd03259 201 IAVMNEGRIV 210 (213)
T ss_pred EEEEECCEEE
Confidence 9999999874
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=406.22 Aligned_cols=327 Identities=24% Similarity=0.298 Sum_probs=231.3
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~ 316 (652)
.+..+|+.....++++.+|||||+|||+||+||+.+| ++|||||||+|||+..+..|.++|+ +.|.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3677888532368999999999999999999999986 8999999999999999999988764 4689999999999
Q ss_pred HHHHhhcCeEEEE------cCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCccccchhHHH
Q 006275 317 AFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLIN-RLGAGANSGRASSAE 389 (652)
Q Consensus 317 ~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~ 389 (652)
+++. .||+|++| ++|++ .+.|++.++...... ... .+.+ ..
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~I-v~~g~~~el~~~~~~---------------------lt~~~l~~-----~~---- 597 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEV-VASGTPEEILANPDS---------------------LTGQYLSG-----KK---- 597 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEE-eeccCHHHHhcCchh---------------------eeeecccc-----cc----
Confidence 9995 89999999 67766 577776554211000 000 0000 00
Q ss_pred HHHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHH
Q 006275 390 KKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469 (652)
Q Consensus 390 ~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~ 469 (652)
....+ + . . ..+....|+++|++. ..|+|+||+|+.|++++|+|+||||||||++-
T Consensus 598 ----------~~~~~---~--~---~--~~~~~~~l~l~~~~~-----~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~ 652 (924)
T TIGR00630 598 ----------KIEVP---K--E---R--RPGNGKFLTLKGARE-----NNLKNITVSIPLGLFTCITGVSGSGKSTLIND 652 (924)
T ss_pred ----------ccccc---c--c---c--cCCCcceEEEEeCcc-----CCcCceEEEEeCCCEEEEECCCCCCHHHHHHH
Confidence 00000 0 0 0 001233699999873 25999999999999999999999999999983
Q ss_pred Hh---------C-CCCCC-----ee------EEEECceecc---------------------------------cceecc
Q 006275 470 IM---------G-LEKPR-----GG------EVLLGEHNVL---------------------------------PNYFEQ 495 (652)
Q Consensus 470 l~---------g-~~~p~-----~G------~i~~~g~~~~---------------------------------~~~~~~ 495 (652)
+. + ..+|. .| .|.++..++. ++.|..
T Consensus 653 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSf 732 (924)
T TIGR00630 653 TLYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSF 732 (924)
T ss_pred HHHHHHHHHhcccccCCCCcCccccccCCCceEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCC
Confidence 32 1 11110 11 2344332210 011111
Q ss_pred ccc------------------------------------------------ccCCCCCCHHHHHHHhhhhccHHHHHHHH
Q 006275 496 NQA------------------------------------------------EALDLDKTVLETVAEAAEDWRIDDIKGLL 527 (652)
Q Consensus 496 ~~~------------------------------------------------~~~~~~~tv~e~~~~~~~~~~~~~~~~~L 527 (652)
|.. ..-..++|+.|.+.+...........+.|
T Consensus 733 N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L 812 (924)
T TIGR00630 733 NVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTL 812 (924)
T ss_pred CCCCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHH
Confidence 100 00012344555544433322333456788
Q ss_pred hhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc---CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHH
Q 006275 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK---PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRY 601 (652)
Q Consensus 528 ~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~---~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~ 601 (652)
..+|+.....++++.+|||||+||++||++|+. +|+++||||||+|||+.++..+.++|+++ +.|||+|+|+++
T Consensus 813 ~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~ 892 (924)
T TIGR00630 813 CDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD 892 (924)
T ss_pred HHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 899985334689999999999999999999997 59999999999999999999999999865 469999999999
Q ss_pred HHHhhccEEEEE------eCCEEEeecCChhh
Q 006275 602 FVKQIVNRVVEV------KGSNLQDYAGDYNV 627 (652)
Q Consensus 602 ~i~~~~drvi~l------~~g~i~~~~g~~~~ 627 (652)
++. .||++++| ++|+++ +.|++++
T Consensus 893 ~i~-~aD~ii~Lgp~~G~~gG~iv-~~G~~~~ 922 (924)
T TIGR00630 893 VIK-TADYIIDLGPEGGDGGGTIV-ASGTPEE 922 (924)
T ss_pred HHH-hCCEEEEecCCccCCCCEEE-EeCCHHH
Confidence 985 59999999 689987 4577664
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=340.03 Aligned_cols=209 Identities=30% Similarity=0.482 Sum_probs=183.1
Q ss_pred ceEEEeEEEEeCCee-eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEE
Q 006275 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v 166 (652)
+|++.+++++|++.. +++||||++++|+++||+|+|||||||+|++|++++.|++|+|.++|.+ .+||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 488999999999865 9999999999999999999999999999999999999999999998753 369999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+-+..++..+|++||+.. |.... .+...+++.++.++.+.|
T Consensus 81 ~~e~glY~RlT~rEnl~~-Fa~L~--------------------------------------~l~~~~~kari~~l~k~l 121 (245)
T COG4555 81 FGERGLYARLTARENLKY-FARLN--------------------------------------GLSRKEIKARIAELSKRL 121 (245)
T ss_pred cCCcChhhhhhHHHHHHH-HHHHh--------------------------------------hhhhhHHHHHHHHHHHHh
Confidence 987788889999999863 21100 012234577888899999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhc
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l~~~~ 323 (652)
++. +..|+.+.+||-||||||+|||||+++|++|+|||||||||..++..+.+++ ++.|++||++||+++++..+|
T Consensus 122 ~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealC 200 (245)
T COG4555 122 QLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALC 200 (245)
T ss_pred ChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhh
Confidence 996 7899999999999999999999999999999999999999999999998876 456999999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
|+|+++++|.+ ++.|+.++...
T Consensus 201 Drvivlh~Gev-v~~gs~~~l~~ 222 (245)
T COG4555 201 DRVIVLHKGEV-VLEGSIEALDA 222 (245)
T ss_pred heEEEEecCcE-EEcCCHHHHHH
Confidence 99999999998 58888766543
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=375.02 Aligned_cols=210 Identities=28% Similarity=0.440 Sum_probs=179.8
Q ss_pred CCCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEE
Q 006275 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIA 164 (652)
Q Consensus 94 ~~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~ 164 (652)
...+|+++|++++|+++.+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..||
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 3457999999999999899999999999999999999999999999999999999999999998753 3599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+++..|++||+... ... . .........++.++++
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~-~~~--------------~------------------------~~~~~~~~~~~~~ll~ 158 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVF-GRY--------------F------------------------GMSTREIEAVIPSLLE 158 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHH-HHH--------------c------------------------CCCHHHHHHHHHHHHH
Confidence 999999888889999998521 000 0 0001112334567788
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHh
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~ 321 (652)
.+|+. +..++++.+|||||||||+||+||+++|++|||||||+|||+.++.++.++|++ .|+|||++||+++++.+
T Consensus 159 ~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~ 237 (340)
T PRK13536 159 FARLE-SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER 237 (340)
T ss_pred HcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 88986 567889999999999999999999999999999999999999999999988753 58999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+||||++|++|++ .+.|+.+++
T Consensus 238 ~~d~i~il~~G~i-~~~g~~~~l 259 (340)
T PRK13536 238 LCDRLCVLEAGRK-IAEGRPHAL 259 (340)
T ss_pred hCCEEEEEECCEE-EEEcCHHHH
Confidence 9999999999998 467876554
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=370.58 Aligned_cols=202 Identities=31% Similarity=0.485 Sum_probs=179.6
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc--------ceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------NYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------~~~~~ 495 (652)
.|+++||++.||+..+++++||+|+.||+++|+||||||||||||+|+|+.+|++|+|.++|.++.. ++++|
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 5899999999987669999999999999999999999999999999999999999999999987732 35555
Q ss_pred cccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+ ..++|++||++|+.+..... ...++.+..+.+++ .++++++|.+|||||||||||||||+++|+++||||
T Consensus 83 ~--yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l-~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE 159 (338)
T COG3839 83 N--YALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGL-EHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159 (338)
T ss_pred C--ccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCC-hhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence 4 67899999999999976532 24567888999999 578999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 570 PTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
|+|+||...+..+...|++ ++.|+|+||||..++..++|||++|++|+|... |.+.+..
T Consensus 160 PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~-g~p~ely 222 (338)
T COG3839 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQV-GTPLELY 222 (338)
T ss_pred chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeec-CChHHHh
Confidence 9999999999988887765 457999999999999999999999999999864 6665544
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=369.01 Aligned_cols=207 Identities=31% Similarity=0.509 Sum_probs=178.8
Q ss_pred ceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEE
Q 006275 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (652)
Q Consensus 97 ~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v 166 (652)
.++++|+++.|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+ .+|||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 488999999999 6899999999999999999999999999999999999999999999999742 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++.+|++||+..... +.. .......+++.++++.+
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~---------------l~~------------------------~~~~~~~~~~~~~l~~~ 124 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFAR---------------LYG------------------------LSKEEAEERIEELLELF 124 (293)
T ss_pred ccCCCCCccccHHHHHHHHHH---------------HhC------------------------CChhHHHHHHHHHHHHc
Confidence 999999999999999852100 000 00012345788899999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCC-CeEEEEecCHHHHHhh
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQD-VPMVIISHDRAFLDQL 322 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g-~tvIivsHd~~~l~~~ 322 (652)
|+.. ..++++.+||+|||||++||+||+.+|++|||||||+||||.++..+.++|+ +.| +|||++||.++.+..+
T Consensus 125 ~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 125 GLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEEL 203 (293)
T ss_pred CCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh
Confidence 9975 4578899999999999999999999999999999999999999999998875 345 7999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||+|+++++|++ .+.|..+++
T Consensus 204 ~d~v~il~~G~~-~~~g~~~~l 224 (293)
T COG1131 204 CDRVIILNDGKI-IAEGTPEEL 224 (293)
T ss_pred CCEEEEEeCCEE-EEeCCHHHH
Confidence 999999999998 466776654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=359.64 Aligned_cols=204 Identities=27% Similarity=0.416 Sum_probs=180.8
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECce---ecc--------cce
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NVL--------PNY 492 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~---~~~--------~~~ 492 (652)
+|+++|+++.|+...+++|||++|+.||.+|+.||||||||||||+|+|++.|++|+|.++|. +.. .++
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 589999999999999999999999999999999999999999999999999999999999998 432 356
Q ss_pred ecccccccCCCCCCHHHHHHHhhhh--------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAED--------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~--------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+.|+ +.+++.+||.+||+++... ....++.++|+.+.+ ..+.+++|.+|||||||||||||||+.+|++
T Consensus 82 vFQ~--YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL-~~la~ryP~QLSGGQrQRVALARALA~eP~v 158 (345)
T COG1118 82 VFQH--YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL-EGLADRYPAQLSGGQRQRVALARALAVEPKV 158 (345)
T ss_pred EEec--hhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcc-cchhhcCchhcChHHHHHHHHHHHhhcCCCe
Confidence 6654 5689999999999998632 223457888999999 4789999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||||+++||..-+..+...|++ ++.|+|+||||.+++.++||||++|++|+|.. .|+++++...
T Consensus 159 LLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq-vg~p~ev~~~ 228 (345)
T COG1118 159 LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ-VGPPDEVYDH 228 (345)
T ss_pred EeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee-eCCHHHHhcC
Confidence 999999999999999988888765 46799999999999999999999999999974 5777776543
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=421.36 Aligned_cols=328 Identities=23% Similarity=0.282 Sum_probs=234.0
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~ 317 (652)
|..+|+.....++++.+|||||+|||+||+||..+| ++|||||||+|||+..++.|.++|+ +.|.|||+||||++
T Consensus 460 L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~ 539 (1809)
T PRK00635 460 LIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ 539 (1809)
T ss_pred HHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 457788632368999999999999999999999999 8999999999999999999988764 46899999999999
Q ss_pred HHHhhcCeEEEEc------CCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHH
Q 006275 318 FLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKK 391 (652)
Q Consensus 318 ~l~~~~d~ii~l~------~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 391 (652)
. .++||+|++|. +|++ .+.|+++++...... ....+.+.. .
T Consensus 540 v-i~~aDrVi~L~pGag~~gG~I-v~~G~~~eil~~~~~---------------------l~~~~l~~~----~------ 586 (1809)
T PRK00635 540 M-ISLADRIIDIGPGAGIFGGEV-LFNGSPREFLAKSDS---------------------LTAKYLRQE----L------ 586 (1809)
T ss_pred H-HHhCCEEEEEcCCcccCCCEE-EEecCHHHHhhChHH---------------------HHHHHhcCc----c------
Confidence 5 48999999997 4454 577877665321100 000000000 0
Q ss_pred HHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHH---
Q 006275 392 LERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK--- 468 (652)
Q Consensus 392 l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~--- 468 (652)
....+ .........+++++++. ..|+++||+|+.||+++|+|+||||||||++
T Consensus 587 --------~~~~~-----------~~~~~~~~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L 642 (1809)
T PRK00635 587 --------TIPIP-----------EKRTNSLGTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTL 642 (1809)
T ss_pred --------cccCc-----------ccccCCCCeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHH
Confidence 00000 00001123689999863 3699999999999999999999999999999
Q ss_pred ------HHhCCCCCCee----E----EEECceec------------------c---------------cceecccc----
Q 006275 469 ------LIMGLEKPRGG----E----VLLGEHNV------------------L---------------PNYFEQNQ---- 497 (652)
Q Consensus 469 ------~l~g~~~p~~G----~----i~~~g~~~------------------~---------------~~~~~~~~---- 497 (652)
.|.|...+..+ . |.+|..++ . ...|..+.
T Consensus 643 ~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~ 722 (1809)
T PRK00635 643 VPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGA 722 (1809)
T ss_pred HHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCC
Confidence 56665322111 1 12221111 0 00011110
Q ss_pred ---------------c------------------ccCCCCCCHHHHHHHhhhh--------ccHHHHHHHHhhCCCChhh
Q 006275 498 ---------------A------------------EALDLDKTVLETVAEAAED--------WRIDDIKGLLGRCNFKADM 536 (652)
Q Consensus 498 ---------------~------------------~~~~~~~tv~e~~~~~~~~--------~~~~~~~~~L~~~~l~~~~ 536 (652)
+ .......||.|++...... ....+..++|+.+|+. +.
T Consensus 723 C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~vGL~-~l 801 (1809)
T PRK00635 723 CAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLD-YL 801 (1809)
T ss_pred CCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHcCCc-ch
Confidence 0 0122356778877654321 1112223578889984 44
Q ss_pred -hccCcCCCCHHHHHHHHHHHHHc---cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccE
Q 006275 537 -LDRKVSLLSGGEKARLAFCKFMV---KPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNR 609 (652)
Q Consensus 537 -~~~~~~~LSgGqrqrv~LAral~---~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~dr 609 (652)
.++++.+||||||||++|||+|+ .+|++|||||||+|||+.+.+.+.++|+++ +.|||+|||+++++ .+||+
T Consensus 802 ~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDr 880 (1809)
T PRK00635 802 PLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADY 880 (1809)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCE
Confidence 68999999999999999999997 699999999999999999999999999765 46999999999999 78999
Q ss_pred EEEEe------CCEEEeecCChhhHhh
Q 006275 610 VVEVK------GSNLQDYAGDYNVCFT 630 (652)
Q Consensus 610 vi~l~------~g~i~~~~g~~~~~~~ 630 (652)
+++|. +|+++ ..|+++++..
T Consensus 881 Vi~L~p~gg~~~G~iv-~~Gtpeel~~ 906 (1809)
T PRK00635 881 VLELGPEGGNLGGYLL-ASCSPEELIH 906 (1809)
T ss_pred EEEEccCCCCCCCEEE-EeCCHHHHHh
Confidence 99996 67876 4688877654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=376.90 Aligned_cols=209 Identities=29% Similarity=0.454 Sum_probs=182.0
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEe
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~ 167 (652)
.+|+++|++++|++..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..||||+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 35999999999998889999999999999999999999999999999999999999999998743 3599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|++.+++.+||+||+...+.. ...+..+...++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~l~ 123 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKN---------------------------------------RGMGRAEVAERVAELLDLVG 123 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999998999999998643210 00111233456778899999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~ 323 (652)
+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+ +.+.|+|+||||.+++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~ 202 (353)
T TIGR03265 124 LP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMA 202 (353)
T ss_pred CC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 96 67899999999999999999999999999999999999999999999988764 35899999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+|++|++|++. ..|+.+++.
T Consensus 203 d~i~vl~~G~i~-~~g~~~~~~ 223 (353)
T TIGR03265 203 DRIVVMNHGVIE-QVGTPQEIY 223 (353)
T ss_pred CEEEEEECCEEE-EEcCHHHHH
Confidence 999999999984 567766554
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=345.64 Aligned_cols=202 Identities=29% Similarity=0.403 Sum_probs=179.2
Q ss_pred cEEEEEeeeeEe-CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------
Q 006275 423 SVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (652)
Q Consensus 423 ~~i~~~~v~~~y-~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (652)
.+|+++||++.| +++.+|++|||+|++||+++|+||||||||||||+|.|+.+|++|+|.++|.++.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 479999999999 6789999999999999999999999999999999999999999999999997652
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhh-----------h---ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHH
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAE-----------D---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~-----------~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~L 554 (652)
.++++| ..++.+.++|++|+..+.- . .+...+.++|+++|+. +...++..+|||||||||+|
T Consensus 82 ~iGmIfQ--~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQ--QFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEec--cCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcchhHHHHH
Confidence 234444 4578899999999987531 1 1234577899999994 67889999999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
||||+++|+|+|.|||+++|||.+.+.+++.|++. +.|||+..|+++.+.++||||+-|++|+|+ |+|+.++.
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el 235 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASEL 235 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhh
Confidence 99999999999999999999999999999999754 569999999999999999999999999998 88988763
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=353.41 Aligned_cols=204 Identities=28% Similarity=0.472 Sum_probs=173.6
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEec
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~Q 168 (652)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 578999999998889999999999999999999999999999999999999999999998742 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++..|+++|+...... . .........++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03265 81 DLSVDDELTGWENLYIHARL---------------Y------------------------GVPGAERRERIDELLDFVGL 121 (220)
T ss_pred CccccccCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99887788999998521100 0 00111233456778889998
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .++|||++||+++++..+||
T Consensus 122 ~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 122 L-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred H-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 567889999999999999999999999999999999999999999999887743 48899999999999999999
Q ss_pred eEEEEcCCeEEEecCChH
Q 006275 325 KIVETEMGVSRTYEGNYS 342 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~ 342 (652)
+|+++++|++. ..|+.+
T Consensus 201 ~i~~l~~G~i~-~~~~~~ 217 (220)
T cd03265 201 RVAIIDHGRII-AEGTPE 217 (220)
T ss_pred EEEEEeCCEEE-EeCChH
Confidence 99999999984 445543
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=376.65 Aligned_cols=211 Identities=26% Similarity=0.404 Sum_probs=182.6
Q ss_pred CCCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEE
Q 006275 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAF 165 (652)
Q Consensus 94 ~~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~ 165 (652)
..+.|+++|++++|++.++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.. ..|||
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4456999999999998889999999999999999999999999999999999999999999998753 35999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++.+||+||+...+... .....+..+++.++++.
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~---------------------------------------~~~~~~~~~~~~~~l~~ 131 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQ---------------------------------------KTPAAEITPRVMEALRM 131 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhc---------------------------------------CCCHHHHHHHHHHHHHH
Confidence 999999999999999986432100 01112234567788889
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~ 321 (652)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||.+++..
T Consensus 132 ~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~ 210 (375)
T PRK09452 132 VQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALT 210 (375)
T ss_pred cCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9996 67899999999999999999999999999999999999999999999988764 358999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+||+|++|++|++. ..|++.++.
T Consensus 211 laDri~vl~~G~i~-~~g~~~~i~ 233 (375)
T PRK09452 211 MSDRIVVMRDGRIE-QDGTPREIY 233 (375)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999984 567766554
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=347.35 Aligned_cols=193 Identities=35% Similarity=0.514 Sum_probs=166.9
Q ss_pred EEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
+++++||++.|+. ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.++.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 3689999999963 37999999999999999999999999999999999999999999999997763
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhh----h--ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHc
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE----D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~----~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~ 559 (652)
.++++|+ .++.+.+|+.||+..... . .....+..+++.+|+.....+++|.+|||||||||||||||+
T Consensus 81 R~~~iGfvFQ~--~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 81 RRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHhEEEECcc--CCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 2455554 578899999999986421 1 123457788999999645445899999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
.+|+|+|.||||.+||.++.+.+.+++.+. +.||||||||...+. +|||++.|.+|++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 999999999999999999999999998765 459999999998775 69999999999854
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=369.13 Aligned_cols=207 Identities=28% Similarity=0.428 Sum_probs=176.4
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEe
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~ 167 (652)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+||++
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 5999999999998889999999999999999999999999999999999999999999998742 3699999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|++.+++..|++||+.... .. . ..+......++.++++.+|
T Consensus 84 q~~~~~~~~tv~e~l~~~~-~~--------------~------------------------~~~~~~~~~~~~~ll~~~~ 124 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFG-RY--------------F------------------------GMSTREIEAVIPSLLEFAR 124 (303)
T ss_pred ccccCCcCCcHHHHHHHHH-HH--------------c------------------------CCCHHHHHHHHHHHHHHCC
Confidence 9998878899999985210 00 0 0001112334556788888
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcC
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d 324 (652)
+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .|+|||++||+++++..+||
T Consensus 125 l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d 203 (303)
T TIGR01288 125 LE-SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCD 203 (303)
T ss_pred Ch-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 86 567888999999999999999999999999999999999999999999988753 58999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~ 344 (652)
+|++|++|++ .+.|+.+++
T Consensus 204 ~i~~l~~G~i-~~~g~~~~~ 222 (303)
T TIGR01288 204 RLCVLESGRK-IAEGRPHAL 222 (303)
T ss_pred EEEEEECCEE-EEEcCHHHH
Confidence 9999999997 466775543
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=354.19 Aligned_cols=207 Identities=34% Similarity=0.493 Sum_probs=184.4
Q ss_pred cEEEEEeeeeEeCCe-eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------c
Q 006275 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~-~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (652)
.+++++++++.|++. .+|+++||+|++||+++|+|+||||||||+++|+|+++|++|.|.++|.++. .
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 468999999999876 8999999999999999999999999999999999999999999999997643 4
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+++.|+++.. ++..||.+.++++.... ...++.++|..+|+. +..++++.+|||||||||+||.+|+.+|++
T Consensus 82 G~VfQnpd~q-~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 82 GLVFQNPDDQ-LFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred EEEEECcccc-cccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-hhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 6788887654 46789999999875421 234578899999995 679999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
|||||||++||+.+++.+.+.++++ +.|+|++|||++++..+|||+++|++|++. +.|++.++++..
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~~~~ 230 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIFNDA 230 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHhhhh
Confidence 9999999999999999999999876 359999999999999999999999999996 678888776654
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=374.42 Aligned_cols=208 Identities=25% Similarity=0.419 Sum_probs=181.1
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCC--cEEEECCCC--------ceEEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS--GNVIKAKSN--------MKIAFL 166 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~--G~i~~~~~~--------~~i~~v 166 (652)
.|+++|++++|++..+|+|+||+|++|++++|+|||||||||||++|+|+++|++ |+|.++|.. ..|+|+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 3899999999998889999999999999999999999999999999999999999 999998743 359999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++.+||+||+...+... ..+..+...++.++++.+
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~~---------------------------------------~~~~~~~~~~v~~~l~~~ 125 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRAQ---------------------------------------KMPKADIAERVADALKLV 125 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHHc---------------------------------------CCCHHHHHHHHHHHHHhc
Confidence 99999989999999986432100 011223445677889999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cC-CCeEEEEecCHHHHHh
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ-DVPMVIISHDRAFLDQ 321 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~-g~tvIivsHd~~~l~~ 321 (652)
|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+ +. |.|+|+||||++++..
T Consensus 126 gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~ 204 (362)
T TIGR03258 126 GLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALT 204 (362)
T ss_pred CCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 996 67899999999999999999999999999999999999999999999988764 23 7899999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+||+|++|++|++. ..|+.+++.
T Consensus 205 l~dri~vl~~G~i~-~~g~~~~~~ 227 (362)
T TIGR03258 205 LADKAGIMKDGRLA-AHGEPQALY 227 (362)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999984 668776654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=375.76 Aligned_cols=208 Identities=26% Similarity=0.420 Sum_probs=178.9
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q 168 (652)
.|+++|++++|+++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..|+|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 4899999999998889999999999999999999999999999999999999999999998742 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++.+||+||+...... . .....+..+++.++++.+|+
T Consensus 83 ~~~l~~~~tv~eni~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~lgL 123 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKL---------------A------------------------GAKKEEINQRVNQVAEVLQL 123 (369)
T ss_pred CcccCCCCCHHHHHHhHHhh---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99988889999998632110 0 00111234566788899999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+ +.|.|+|+||||++++..+||
T Consensus 124 ~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d 202 (369)
T PRK11000 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred h-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC
Confidence 6 57889999999999999999999999999999999999999999999887764 348999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+|++|++|++. ..|+..++.
T Consensus 203 ~i~vl~~G~i~-~~g~~~~i~ 222 (369)
T PRK11000 203 KIVVLDAGRVA-QVGKPLELY 222 (369)
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999984 567765543
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=355.05 Aligned_cols=211 Identities=29% Similarity=0.443 Sum_probs=175.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q 168 (652)
.|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 3899999999998889999999999999999999999999999999999999999999998742 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++..||.||+....... . ... ..+......++.++++.+|+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~-~----------~~~------------------------~~~~~~~~~~~~~~l~~~~l 126 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVK-P----------RSE------------------------RPPEAEIRAKVHELLKLVQL 126 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhc-c----------ccc------------------------cCCHHHHHHHHHHHHHHcCC
Confidence 998877889999985321100 0 000 00001123355677888898
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||++||+++++..+||
T Consensus 127 ~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d 205 (239)
T cd03296 127 D-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred h-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 5 567888999999999999999999999999999999999999999999988753 38899999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~ 344 (652)
+|++|++|++. ..|+.+++
T Consensus 206 ~i~~l~~G~i~-~~~~~~~~ 224 (239)
T cd03296 206 RVVVMNKGRIE-QVGTPDEV 224 (239)
T ss_pred EEEEEECCeEE-EecCHHHH
Confidence 99999999974 56765544
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=373.52 Aligned_cols=210 Identities=24% Similarity=0.406 Sum_probs=181.5
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEE
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFL 166 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v 166 (652)
.++|+++|++++|++..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..|||+
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 446999999999998889999999999999999999999999999999999999999999998753 359999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++.+||.||+...+... .....+..+++.++++.+
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~---------------------------------------~~~~~~~~~~v~~~l~~l 137 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQD---------------------------------------KLPKAEIASRVNEMLGLV 137 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHc---------------------------------------CCCHHHHHHHHHHHHHHc
Confidence 99999999999999986432100 011123345677889999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhh
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~ 322 (652)
|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.| ++.|.|+|+||||.+++..+
T Consensus 138 ~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l 216 (377)
T PRK11607 138 HMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTM 216 (377)
T ss_pred CCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 996 6789999999999999999999999999999999999999999998887544 45689999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
||+|++|++|++. ..|+..++.
T Consensus 217 aDri~vl~~G~i~-~~g~~~~~~ 238 (377)
T PRK11607 217 AGRIAIMNRGKFV-QIGEPEEIY 238 (377)
T ss_pred CCEEEEEeCCEEE-EEcCHHHHH
Confidence 9999999999984 567766654
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=349.05 Aligned_cols=198 Identities=30% Similarity=0.464 Sum_probs=170.3
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q~ 169 (652)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 478999999998889999999999999999999999999999999999999999999998742 259999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+++..|++||+...... . ........+++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKL---------------R------------------------KVPKDEIDERVREVAELLQIE 121 (213)
T ss_pred hhhccCCCHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCH
Confidence 9887788999998532100 0 001112234566778888986
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (652)
+..++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++|||++++..+||+
T Consensus 122 -~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 122 -HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred -HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 567888999999999999999999999999999999999999999999988743 489999999999999999999
Q ss_pred EEEEcCCeEE
Q 006275 326 IVETEMGVSR 335 (652)
Q Consensus 326 ii~l~~G~~~ 335 (652)
|+++++|++.
T Consensus 201 i~~l~~g~~~ 210 (213)
T cd03301 201 IAVMNDGQIQ 210 (213)
T ss_pred EEEEECCEEE
Confidence 9999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=351.22 Aligned_cols=195 Identities=30% Similarity=0.501 Sum_probs=166.3
Q ss_pred eEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------
Q 006275 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (652)
Q Consensus 98 i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------- 160 (652)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 478999999976 679999999999999999999999999999999999999999999998632
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..++|++|++.+++..|++||+...... . ........+++
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLL---------------A------------------------GVPKKERRERA 121 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhh---------------c------------------------CCCHHHHHHHH
Confidence 2599999999887788999998532100 0 00011123456
Q ss_pred HHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006275 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (652)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (652)
.++++.+|+. +..++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .++|||+|||+
T Consensus 122 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 122 EELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred HHHHHHcCCc-hhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 6788889996 456888999999999999999999999999999999999999999999888753 48899999999
Q ss_pred HHHHHhhcCeEEEEcCCe
Q 006275 316 RAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~ 333 (652)
++++. +||++++|++|+
T Consensus 201 ~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 201 PELAE-YADRIIELRDGK 217 (218)
T ss_pred HHHHh-hhcEEEEeeCCc
Confidence 99997 999999999886
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=360.01 Aligned_cols=211 Identities=21% Similarity=0.317 Sum_probs=177.6
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------c
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------~ 161 (652)
+.+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 346999999999998889999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
.++|++|++.+++..|+.||+...+... . ..+......++.+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~--------------~------------------------~~~~~~~~~~~~~ 126 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREH--------------T------------------------QLPAPLLHSTVMM 126 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHc--------------c------------------------CCCHHHHHHHHHH
Confidence 5999999998877889999985321100 0 0000112234567
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~ 317 (652)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||+||||++
T Consensus 127 ~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 127 KLEAVGLR-GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 78889986 567888999999999999999999999999999999999999999999887753 3789999999999
Q ss_pred HHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
++..+||+|++|++|++. +.|+.+++.
T Consensus 206 ~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 232 (269)
T PRK11831 206 EVLSIADHAYIVADKKIV-AHGSAQALQ 232 (269)
T ss_pred HHHHhhCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999984 667766543
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=371.13 Aligned_cols=212 Identities=29% Similarity=0.437 Sum_probs=181.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q 168 (652)
.|+++|++++|++.++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.+ ..|+|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 4899999999998889999999999999999999999999999999999999999999998743 36999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++.+||+||+...+... .. ....+..+..+++.++++.+|+
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~--------------~~---------------------~~~~~~~~~~~~~~~~l~~~~L 126 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVL--------------PR---------------------RERPNAAAIKAKVTQLLEMVQL 126 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhc--------------cc---------------------ccCCCHHHHHHHHHHHHHHcCC
Confidence 999988999999986332100 00 0001112334567788999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+ +.|+|+|+||||++++..+||
T Consensus 127 ~-~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D 205 (353)
T PRK10851 127 A-HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD 205 (353)
T ss_pred c-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 67899999999999999999999999999999999999999999998887764 348999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+|++|++|++. ..|+..++.
T Consensus 206 ri~vl~~G~i~-~~g~~~~i~ 225 (353)
T PRK10851 206 RVVVMSQGNIE-QAGTPDQVW 225 (353)
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999984 667766654
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=348.93 Aligned_cols=197 Identities=29% Similarity=0.504 Sum_probs=168.2
Q ss_pred ceEEEeEEEEe-CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------ce
Q 006275 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (652)
Q Consensus 97 ~i~v~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------~~ 162 (652)
+|+++|++++| +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 37899999999 46789999999999999999999999999999999999999999999998742 25
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
++|++|++.+++..|+.+|+...... . .......+.++.++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 121 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEV---------------R------------------------GKKEREIQRRVGAA 121 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHH
Confidence 99999999887788999998532100 0 00111223456678
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l 319 (652)
++.+|+. +..++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||+|||+++++
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 200 (214)
T TIGR02673 122 LRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200 (214)
T ss_pred HHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 8888986 567888999999999999999999999999999999999999999999988753 589999999999999
Q ss_pred HhhcCeEEEEcCCe
Q 006275 320 DQLCTKIVETEMGV 333 (652)
Q Consensus 320 ~~~~d~ii~l~~G~ 333 (652)
..+||++++|++|+
T Consensus 201 ~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 201 DRVAHRVIILDDGR 214 (214)
T ss_pred HHhcCEEEEecCCC
Confidence 99999999999874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=353.25 Aligned_cols=216 Identities=28% Similarity=0.431 Sum_probs=175.9
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEEE
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~v 166 (652)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 468999999988889999999999999999999999999999999999999999999998742 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++..||+||+......... ..+ .... ..........++.++++.+
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~-----~~~---~~~~---------------------~~~~~~~~~~~~~~~l~~~ 131 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTG-----SGL---LLAR---------------------ARREEREARERAEELLERV 131 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccc-----ccc---cccc---------------------ccccHHHHHHHHHHHHHHc
Confidence 9999888888999998532110000 000 0000 0000112234567788899
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~ 323 (652)
|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .|+|||++|||++++..+|
T Consensus 132 ~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~ 210 (236)
T cd03219 132 GLA-DLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLA 210 (236)
T ss_pred Ccc-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 996 567889999999999999999999999999999999999999999999988743 5889999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|+|+++++|++. ..|+.+++
T Consensus 211 d~i~~l~~G~i~-~~~~~~~~ 230 (236)
T cd03219 211 DRVTVLDQGRVI-AEGTPDEV 230 (236)
T ss_pred CEEEEEeCCEEE-eecCHHHh
Confidence 999999999984 56765544
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=349.46 Aligned_cols=198 Identities=31% Similarity=0.429 Sum_probs=169.0
Q ss_pred eEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----ceEEEEec
Q 006275 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQ 168 (652)
Q Consensus 98 i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----~~i~~v~Q 168 (652)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 478999999987 789999999999999999999999999999999999999999999998743 36999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++..|++||+...... . ........+++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03293 81 QDALLPWLTVLDNVALGLEL---------------Q------------------------GVPKAEARERAEELLELVGL 121 (220)
T ss_pred ccccccCCCHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99877778999998532100 0 00011123456678888898
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .++|||++||+++++..+||
T Consensus 122 ~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 200 (220)
T cd03293 122 S-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred h-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 6 567888999999999999999999999999999999999999999999988743 48899999999999999999
Q ss_pred eEEEEc--CCeEE
Q 006275 325 KIVETE--MGVSR 335 (652)
Q Consensus 325 ~ii~l~--~G~~~ 335 (652)
++++|+ +|++.
T Consensus 201 ~i~~l~~~~G~i~ 213 (220)
T cd03293 201 RVVVLSARPGRIV 213 (220)
T ss_pred EEEEEECCCCEEE
Confidence 999999 68873
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=370.36 Aligned_cols=207 Identities=29% Similarity=0.487 Sum_probs=176.2
Q ss_pred ceEEEeEEEEeC----CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------
Q 006275 97 GVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (652)
Q Consensus 97 ~i~v~~ls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------ 160 (652)
+|+++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 489999999997 3679999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..|+|++|++.+++..||+||+...... . .........++
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLEL---------------A------------------------GTPKAEIKARV 121 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHH
Confidence 2599999999887889999998532100 0 00111223456
Q ss_pred HHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006275 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (652)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (652)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||++||+
T Consensus 122 ~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 122 TELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 6788899996 567889999999999999999999999999999999999999999999988753 48999999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
++++..+||+|++|++|++. +.|+..++
T Consensus 201 ~~~i~~~~d~v~~l~~G~i~-~~g~~~~~ 228 (343)
T PRK11153 201 MDVVKRICDRVAVIDAGRLV-EQGTVSEV 228 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999984 66765554
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=363.47 Aligned_cols=206 Identities=25% Similarity=0.485 Sum_probs=177.7
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEec
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~Q 168 (652)
++++|++++|++..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ ..+||++|
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q 82 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecC
Confidence 899999999998889999999999999999999999999999999999999999999998743 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++..|+.||+..... +. ..+..+..+++.++++.+|+
T Consensus 83 ~~~l~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~gl 123 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAG---------------IY------------------------GMKGQLLKQRVEEMIELVGL 123 (301)
T ss_pred CCCCCCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHCCC
Confidence 9988888999999752100 00 00111223456678889999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .++|||++||+++++.++||||
T Consensus 124 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i 202 (301)
T TIGR03522 124 R-PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRV 202 (301)
T ss_pred c-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEE
Confidence 6 567899999999999999999999999999999999999999999999988753 3789999999999999999999
Q ss_pred EEEcCCeEEEecCChHHH
Q 006275 327 VETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 327 i~l~~G~~~~~~g~~~~~ 344 (652)
+++++|++. +.|+.+++
T Consensus 203 ~~l~~G~i~-~~g~~~~~ 219 (301)
T TIGR03522 203 IIINKGKIV-ADKKLDEL 219 (301)
T ss_pred EEEECCEEE-EeCCHHHH
Confidence 999999985 67876654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=344.73 Aligned_cols=198 Identities=28% Similarity=0.515 Sum_probs=170.3
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------ceEEEEeccCc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------MKIAFLSQEFE 171 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------~~i~~v~Q~~~ 171 (652)
|+++|+++.|+++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 478999999988889999999999999999999999999999999999999999999998854 36999999998
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcc
Q 006275 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (652)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (652)
+++..|++||+..... .. ........+.+.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~ 120 (210)
T cd03269 81 LYPKMKVIDQLVYLAQ---------------LK------------------------GLKKEEARRRIDEWLERLELS-E 120 (210)
T ss_pred CCcCCcHHHHHHHHHH---------------Hc------------------------CCChHHHHHHHHHHHHHcCCh-H
Confidence 8778899999752100 00 001112234566788888986 5
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEEE
Q 006275 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (652)
Q Consensus 252 ~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~ii~ 328 (652)
..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .++|||++||+++++..+||++++
T Consensus 121 ~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 200 (210)
T cd03269 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200 (210)
T ss_pred HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEE
Confidence 67788999999999999999999999999999999999999999999888753 478999999999999999999999
Q ss_pred EcCCeEE
Q 006275 329 TEMGVSR 335 (652)
Q Consensus 329 l~~G~~~ 335 (652)
+++|++.
T Consensus 201 l~~g~i~ 207 (210)
T cd03269 201 LNKGRAV 207 (210)
T ss_pred EeCCEEE
Confidence 9999874
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=350.98 Aligned_cols=203 Identities=31% Similarity=0.411 Sum_probs=174.7
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------cc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------PN 491 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------~~ 491 (652)
|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 47899999999889999999999999999999999999999999999999999999999997652 12
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh---cc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
|++|. ..+++..|+.+|+...... .. ...+.++++.+++. +..++++.+|||||||||+|||||+.+|+|
T Consensus 81 ~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~l 157 (235)
T cd03261 81 MLFQS--GALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVALARALALDPEL 157 (235)
T ss_pred EEccC--cccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 44443 3456678999999764221 11 23467889999995 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||||||++||+.++..+.+.|++. +.|||+||||++++..+||||++|++|++. +.|+++++...
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~ 227 (235)
T cd03261 158 LLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEGTPEELRAS 227 (235)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE-EecCHHHHcCC
Confidence 9999999999999999999999864 569999999999999999999999999997 46777776543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-44 Score=336.99 Aligned_cols=213 Identities=30% Similarity=0.435 Sum_probs=183.4
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-----------eEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~-----------~i~ 164 (652)
+.+.++|+.|+|++++++++|||+|++||++||+|||||||||.+.++.|+++|++|+|.+++.+. .||
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 358999999999999999999999999999999999999999999999999999999999997643 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|+||++.++..+||+||++..+.-.. .+ ....+-+.++.++|+
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~-----------------~d--------------------~~~~~~~~~l~~LL~ 125 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIRE-----------------KD--------------------LKKAERKEELDALLE 125 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhh-----------------cc--------------------hhHHHHHHHHHHHHH
Confidence 99999999999999999974431100 00 000112334668899
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH---HHccCCCeEEEEecCHHHHHh
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG---YLGKQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~---~L~~~g~tvIivsHd~~~l~~ 321 (652)
+|++. +..+.+..+||||||+|+.|||||+.+|+++||||||+|+||-+...+.+ .|++.|..|+++.|+..+...
T Consensus 126 ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~ 204 (243)
T COG1137 126 EFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLD 204 (243)
T ss_pred HhchH-HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHh
Confidence 99996 68899999999999999999999999999999999999999998776655 567889999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
+|||.+++.+|++ .+.|++++.+..
T Consensus 205 i~dRaYIi~~G~v-la~G~p~ei~~n 229 (243)
T COG1137 205 ICDRAYIISDGKV-LAEGSPEEIVNN 229 (243)
T ss_pred hhheEEEEecCeE-EecCCHHHHhcC
Confidence 9999999999998 578998877653
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=348.18 Aligned_cols=199 Identities=30% Similarity=0.477 Sum_probs=170.8
Q ss_pred ceEEEeEEEEeCCe----eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceE
Q 006275 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKI 163 (652)
Q Consensus 97 ~i~v~~ls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i 163 (652)
+|+++|++++|+++ ++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 37899999999876 79999999999999999999999999999999999999999999998743 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|++.+++..||+||+...... . .........++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 121 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGL---------------Y------------------------GLKGDELTARLEELA 121 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHH
Confidence 9999999887778999998521100 0 001112234566788
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~ 320 (652)
+.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .|+|||+|||+++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 200 (218)
T cd03266 122 DRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE 200 (218)
T ss_pred HHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 888986 567888999999999999999999999999999999999999999999888753 4889999999999999
Q ss_pred hhcCeEEEEcCCeEE
Q 006275 321 QLCTKIVETEMGVSR 335 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~ 335 (652)
.+||++++|++|++.
T Consensus 201 ~~~d~i~~l~~G~i~ 215 (218)
T cd03266 201 RLCDRVVVLHRGRVV 215 (218)
T ss_pred HhcCEEEEEECCEEe
Confidence 999999999999874
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=353.38 Aligned_cols=211 Identities=24% Similarity=0.415 Sum_probs=178.5
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------- 160 (652)
+.|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 45999999999998889999999999999999999999999999999999999999999998732
Q ss_pred --------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCCh
Q 006275 161 --------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (652)
Q Consensus 161 --------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (652)
.+++|++|++.+++..|++||+...... +. ....
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~--------------~~------------------------~~~~ 125 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------VL------------------------GLSK 125 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH--------------hC------------------------CCCH
Confidence 2599999999887788999998532100 00 0011
Q ss_pred hcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeE
Q 006275 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (652)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tv 309 (652)
.....++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|+ +.|+||
T Consensus 126 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~ti 205 (257)
T PRK10619 126 QEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205 (257)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 12244566788899996433478899999999999999999999999999999999999999999998764 358999
Q ss_pred EEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 310 IivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+||||++++..+||||+++++|+++ +.|+++++.
T Consensus 206 iivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 240 (257)
T PRK10619 206 VVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQLF 240 (257)
T ss_pred EEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhh
Confidence 99999999999999999999999985 667776653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=352.71 Aligned_cols=209 Identities=26% Similarity=0.448 Sum_probs=176.3
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------------- 160 (652)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 5899999999988889999999999999999999999999999999999999999999987631
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..++|++|++.+++..|+.||+...... .. ........++
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~--------------~~------------------------~~~~~~~~~~ 124 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVI--------------VK------------------------GEPKEEATAR 124 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHH--------------hc------------------------CCCHHHHHHH
Confidence 2599999999887788999998532100 00 0001122345
Q ss_pred HHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecC
Q 006275 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHD 315 (652)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd 315 (652)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|+ +.|+|||++||+
T Consensus 125 ~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 125 ARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred HHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 66778888986 45688899999999999999999999999999999999999999999988774 358899999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
++++..+||+|++|++|++. +.|+.+++.
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 232 (250)
T PRK11264 204 MSFARDVADRAIFMDQGRIV-EQGPAKALF 232 (250)
T ss_pred HHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999984 667766553
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=347.21 Aligned_cols=204 Identities=28% Similarity=0.434 Sum_probs=172.2
Q ss_pred eEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEE
Q 006275 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (652)
Q Consensus 98 i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v 166 (652)
|+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 578999999987 789999999999999999999999999999999999999999999998753 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++..|+++|+...... . ........+++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~ 121 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARL---------------K------------------------GLPKSEIKEEVELLLRVL 121 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHc
Confidence 9998887788999997521100 0 000111234556778888
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcC
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d 324 (652)
|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .++|||++||+++++..+||
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 122 GLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCD 200 (220)
T ss_pred CCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcC
Confidence 886 567888999999999999999999999999999999999999999999988753 35899999999999999999
Q ss_pred eEEEEcCCeEEEecCChH
Q 006275 325 KIVETEMGVSRTYEGNYS 342 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~ 342 (652)
+++++++|++. ..|+.+
T Consensus 201 ~i~~l~~g~i~-~~~~~~ 217 (220)
T cd03263 201 RIAIMSDGKLR-CIGSPQ 217 (220)
T ss_pred EEEEEECCEEE-ecCCHH
Confidence 99999999984 556544
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=349.80 Aligned_cols=206 Identities=28% Similarity=0.423 Sum_probs=174.4
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEEE
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~v 166 (652)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 478999999998889999999999999999999999999999999999999999999998742 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++..|++||+....... .........++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~ 121 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIR---------------------------------------GLSKKEREEKLEELLEEF 121 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhc---------------------------------------CCCHHHHHHHHHHHHHHc
Confidence 99998877889999985321000 000011233456778888
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (652)
|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+ +.++|||++|||++++..+|
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~ 200 (232)
T cd03218 122 HIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSIT 200 (232)
T ss_pred CCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 986 56788899999999999999999999999999999999999999999988774 35889999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|+|++|++|++. ..|+.+++
T Consensus 201 d~i~~l~~G~i~-~~~~~~~~ 220 (232)
T cd03218 201 DRAYIIYEGKVL-AEGTPEEI 220 (232)
T ss_pred CEEEEEECCeEE-EEeCHHHh
Confidence 999999999984 56765554
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=346.33 Aligned_cols=192 Identities=31% Similarity=0.540 Sum_probs=165.0
Q ss_pred EEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------ceEEEEeccC
Q 006275 99 KLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEF 170 (652)
Q Consensus 99 ~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------~~i~~v~Q~~ 170 (652)
+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36899999987 789999999999999999999999999999999999999999999998754 2699999997
Q ss_pred cc-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 171 EV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 171 ~~-~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
.. .+..|++||+...... .. ....++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~~~l~ 117 (205)
T cd03226 81 DYQLFTDSVREELLLGLKE-----------------------------------------LD--AGNEQAETVLKDLDLY 117 (205)
T ss_pred hhhhhhccHHHHHhhhhhh-----------------------------------------cC--ccHHHHHHHHHHcCCc
Confidence 42 3467999998522100 00 0123456778888986
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeE
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i 326 (652)
+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||++||+++++..+||++
T Consensus 118 -~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i 196 (205)
T cd03226 118 -ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRV 196 (205)
T ss_pred -hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 56788999999999999999999999999999999999999999999998875 34889999999999999999999
Q ss_pred EEEcCCeE
Q 006275 327 VETEMGVS 334 (652)
Q Consensus 327 i~l~~G~~ 334 (652)
++|++|++
T Consensus 197 ~~l~~G~i 204 (205)
T cd03226 197 LLLANGAI 204 (205)
T ss_pred EEEECCEE
Confidence 99999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=350.27 Aligned_cols=209 Identities=23% Similarity=0.414 Sum_probs=177.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------ceEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------~~i~ 164 (652)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 3789999999988889999999999999999999999999999999999999999999998742 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+++..||.+|+...... .. .........++.++++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~l~ 122 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLR--------------VR------------------------GASKEEAEKQARELLA 122 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHH--------------hc------------------------CCCHHHHHHHHHHHHH
Confidence 999999887788999998522100 00 0011122345667888
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (652)
.+|+. +..++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.++|+ +.++|||++||+++++..
T Consensus 123 ~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 201 (240)
T PRK09493 123 KVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEK 201 (240)
T ss_pred HcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 89986 56788899999999999999999999999999999999999999999988874 358999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+||+++++++|++. +.|+++++.
T Consensus 202 ~~d~i~~l~~G~i~-~~g~~~~~~ 224 (240)
T PRK09493 202 VASRLIFIDKGRIA-EDGDPQVLI 224 (240)
T ss_pred hCCEEEEEECCEEE-eeCCHHHHh
Confidence 99999999999984 667766653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=361.78 Aligned_cols=206 Identities=28% Similarity=0.422 Sum_probs=180.2
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------cce
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNY 492 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~ 492 (652)
..+|+++||+++|+++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 35799999999999889999999999999999999999999999999999999999999999998752 245
Q ss_pred ecccccccCCCCCCHHHHHHHhhhhc--c----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
++|. ..+++.+|+.||+.+..... . ...+.++++.+++. ...++++.+||||||||++|||||+.+|++||
T Consensus 85 v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll 161 (306)
T PRK13537 85 VPQF--DNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLV 161 (306)
T ss_pred Eecc--CcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 5554 35667899999998643221 1 23466889999995 56899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||||+|||+.++..+.++|+++ +.|||++||+++++..+||||++|++|++. +.|++++..+.
T Consensus 162 LDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~ 228 (306)
T PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI-AEGAPHALIES 228 (306)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHhc
Confidence 99999999999999999999875 469999999999999999999999999997 56888876544
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=349.98 Aligned_cols=207 Identities=31% Similarity=0.522 Sum_probs=174.8
Q ss_pred ceEEEeEEEEeCCe----eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------
Q 006275 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------ 160 (652)
+|+++|++++|+++ ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 37899999999876 89999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..++|++|++.+++..|+.||+...+.. . ..........+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEI---------------A------------------------GVPKAEIEERV 121 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHH
Confidence 2599999999887788999998532100 0 00011123345
Q ss_pred HHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006275 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (652)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (652)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||++||+
T Consensus 122 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 122 LELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred HHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 6778888986 567888999999999999999999999999999999999999999999888743 38899999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
++++..+||++++|++|++. ..|+.+++
T Consensus 201 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 228 (233)
T cd03258 201 MEVVKRICDRVAVMEKGEVV-EEGTVEEV 228 (233)
T ss_pred HHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999999999984 55665543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=344.17 Aligned_cols=197 Identities=29% Similarity=0.458 Sum_probs=168.8
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEec
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~Q 168 (652)
|+++|++++|+++++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 57899999998888999999999999 999999999999999999999999999999998753 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++..|+.||+...... . ..+.....+.+.++++.+|+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l 120 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWL---------------K------------------------GIPSKEVKARVDEVLELVNL 120 (211)
T ss_pred CCcccccCCHHHHHHHHHHH---------------h------------------------CCCHHHHHHHHHHHHHHCCC
Confidence 99887778999998521100 0 00011123456677888888
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||+||||++++.++|||+
T Consensus 121 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i 199 (211)
T cd03264 121 G-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQV 199 (211)
T ss_pred H-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEE
Confidence 6 566888999999999999999999999999999999999999999999988853 2689999999999999999999
Q ss_pred EEEcCCeEE
Q 006275 327 VETEMGVSR 335 (652)
Q Consensus 327 i~l~~G~~~ 335 (652)
+++++|++.
T Consensus 200 ~~l~~g~i~ 208 (211)
T cd03264 200 AVLNKGKLV 208 (211)
T ss_pred EEEECCEEE
Confidence 999999874
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=360.47 Aligned_cols=208 Identities=22% Similarity=0.324 Sum_probs=174.7
Q ss_pred eEEEeEEEEeCC-----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------
Q 006275 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (652)
Q Consensus 98 i~v~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------ 160 (652)
|+++|++++|++ .++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999974 469999999999999999999999999999999999999999999998752
Q ss_pred --ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 --MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 --~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..||||+|+|. ..+..||+||+...... . ..+.....+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~-----------------~----------------------~~~~~~~~~ 123 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMN-----------------F----------------------GVSEEDAKQ 123 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHH-----------------c----------------------CCCHHHHHH
Confidence 25999999973 22457999998522100 0 011112334
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (652)
++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .|.|||++|
T Consensus 124 ~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiit 203 (290)
T PRK13634 124 KAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVT 203 (290)
T ss_pred HHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5678889999965567899999999999999999999999999999999999999999999887743 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
||++++..+||||++|++|++ .+.|+..++.
T Consensus 204 Hd~~~~~~~~drv~~l~~G~i-~~~g~~~~~~ 234 (290)
T PRK13634 204 HSMEDAARYADQIVVMHKGTV-FLQGTPREIF 234 (290)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEECCHHHHh
Confidence 999999999999999999998 4678766654
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=361.37 Aligned_cols=210 Identities=22% Similarity=0.342 Sum_probs=175.4
Q ss_pred ceEEEeEEEEeCCe-----eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------- 160 (652)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 38999999999753 59999999999999999999999999999999999999999999986421
Q ss_pred -----------------------ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhh
Q 006275 161 -----------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216 (652)
Q Consensus 161 -----------------------~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (652)
..|||++|+|. .++..||+||+...... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~-----------------~---------- 134 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS-----------------M---------- 134 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHH-----------------c----------
Confidence 24899999873 33457999998522100 0
Q ss_pred HHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHH
Q 006275 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE 296 (652)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~ 296 (652)
..+..+..+++.++++.+|+..+..++++.+|||||||||+|||||+.+|++|||||||++||+.++.
T Consensus 135 ------------~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~ 202 (305)
T PRK13651 135 ------------GVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVK 202 (305)
T ss_pred ------------CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 01112334567788999999656789999999999999999999999999999999999999999999
Q ss_pred HHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 297 WLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 297 ~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
.+.++|+ +.|+|||+||||++++.++||||++|++|++ .+.|+..++..
T Consensus 203 ~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i-~~~g~~~~~~~ 254 (305)
T PRK13651 203 EILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI-IKDGDTYDILS 254 (305)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEE-EEECCHHHHhc
Confidence 9988774 4589999999999999999999999999997 46777666543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=354.12 Aligned_cols=198 Identities=24% Similarity=0.401 Sum_probs=171.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----ceEEEEeccC
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----~~i~~v~Q~~ 170 (652)
+.|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|++
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 90 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDA 90 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCc
Confidence 45999999999998889999999999999999999999999999999999999999999987643 3699999999
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc
Q 006275 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (652)
Q Consensus 171 ~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (652)
.+++..||+||+...+.. ....++.++++.+|+.
T Consensus 91 ~l~~~~tv~enl~~~~~~---------------------------------------------~~~~~~~~~l~~~gl~- 124 (257)
T PRK11247 91 RLLPWKKVIDNVGLGLKG---------------------------------------------QWRDAALQALAAVGLA- 124 (257)
T ss_pred cCCCCCcHHHHHHhcccc---------------------------------------------hHHHHHHHHHHHcCCh-
Confidence 887778999998532100 0112345677888886
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeE
Q 006275 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 251 ~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i 326 (652)
+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.++|||+||||++++..+||+|
T Consensus 125 ~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i 204 (257)
T PRK11247 125 DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRV 204 (257)
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 56788899999999999999999999999999999999999999999988774 34899999999999999999999
Q ss_pred EEEcCCeEEEecCC
Q 006275 327 VETEMGVSRTYEGN 340 (652)
Q Consensus 327 i~l~~G~~~~~~g~ 340 (652)
+++++|++. ..++
T Consensus 205 ~~l~~G~i~-~~~~ 217 (257)
T PRK11247 205 LLIEEGKIG-LDLT 217 (257)
T ss_pred EEEECCEEE-eecc
Confidence 999999984 4454
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=334.30 Aligned_cols=207 Identities=28% Similarity=0.410 Sum_probs=174.6
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCe-----eEEEECceecc-------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----GEVLLGEHNVL------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~-----G~i~~~g~~~~------- 489 (652)
.+.++++|+++.|+++.+|++||++|++++++||+||+|||||||||++.++.+... |+|.++|+++.
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 345899999999999999999999999999999999999999999999999987765 99999999873
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhhhcc------HHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAEDWR------IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~------~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+.++|.+ +. +.+|++||++++..... .+.+...|.+..+. .+.+++.+..||||||||+|||
T Consensus 85 ~lRr~vGMVFQkP--nP-Fp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 85 ELRRRVGMVFQKP--NP-FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHHheeeccCC--CC-CCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence 23445543 33 45999999999864322 12245556655553 2456788899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~--tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
|||+.+|+|||||||||+|||-+...+.++|.++.. |||+|||.+.-+.+++|++.++..|+++++ |+.++++...
T Consensus 162 RalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~-g~T~~iF~~P 239 (253)
T COG1117 162 RALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF-GPTDKIFTNP 239 (253)
T ss_pred HHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE-cCHHhhhcCc
Confidence 999999999999999999999999999999998853 999999999999999999999999999986 7777665443
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=346.03 Aligned_cols=198 Identities=26% Similarity=0.456 Sum_probs=169.1
Q ss_pred eEEEeEEEEe-CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------ceE
Q 006275 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (652)
Q Consensus 98 i~v~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------~~i 163 (652)
|+++|++++| +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 7899999999 66789999999999999999999999999999999999999999999998742 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|++.+++..|+.||+...... . .....+...++.+++
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 122 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLII---------------A------------------------GASGDDIRRRVSAAL 122 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHh---------------c------------------------CCCHHHHHHHHHHHH
Confidence 9999999877889999998532100 0 001112233456778
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (652)
+.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+ +.+.|||++|||++++.
T Consensus 123 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 123 DKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLIS 201 (222)
T ss_pred HHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 888886 56788899999999999999999999999999999999999999999988764 34789999999999999
Q ss_pred hhcCeEEEEcCCeEE
Q 006275 321 QLCTKIVETEMGVSR 335 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~ 335 (652)
.+||+|++|++|++.
T Consensus 202 ~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 202 RRSYRMLTLSDGHLH 216 (222)
T ss_pred HhCCEEEEEECCEEc
Confidence 999999999999874
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=345.78 Aligned_cols=192 Identities=27% Similarity=0.425 Sum_probs=167.2
Q ss_pred EEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------
Q 006275 424 VVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (652)
+|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 4789999999964 47999999999999999999999999999999999999999999999997652
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p 562 (652)
.+|++|+ ..+++..|+.+|+...... ....++.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 81 ~i~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 81 HIGMVFQD--HRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred hceEEecC--ccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1344443 3456678999999764221 1234578899999995 5678999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEE
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i 618 (652)
++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999875 46999999999999999999999999874
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=365.82 Aligned_cols=203 Identities=26% Similarity=0.377 Sum_probs=176.4
Q ss_pred EEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
||+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4899999999952 47999999999999999999999999999999999999999999999998762
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
.++++|+ ..+++..|+.+|+.+.... + ...++.++++.+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~--~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQH--FNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECC--ccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 1344443 3566789999999875421 1 123577899999995 67899999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|++|||||||++||+.++..+.++|++. +.|||+||||++.+.++||+|++|++|++++ .|++++++.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~-~g~~~~v~~ 230 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QGTVSEIFS 230 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHc
Confidence 99999999999999999999999998764 5699999999999999999999999999984 577776654
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=353.54 Aligned_cols=199 Identities=24% Similarity=0.324 Sum_probs=170.2
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----ceEEEEeccCc
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFE 171 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----~~i~~v~Q~~~ 171 (652)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 3789999999988889999999999999999999999999999999999999999999998743 25899999998
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcc
Q 006275 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (652)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (652)
+++..||.+|+...... . .........++.++++.+|+. +
T Consensus 81 ~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~gl~-~ 120 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQL---------------A------------------------GVEKMQRLEIAHQMLKKVGLE-G 120 (255)
T ss_pred cCCCCcHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh-h
Confidence 87778999998532100 0 001111234567788899986 5
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEE
Q 006275 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIV 327 (652)
Q Consensus 252 ~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ii 327 (652)
..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .|+|||+||||++++..+||+|+
T Consensus 121 ~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~ 200 (255)
T PRK11248 121 AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV 200 (255)
T ss_pred HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 67888999999999999999999999999999999999999999999988753 48999999999999999999999
Q ss_pred EEc--CCeEE
Q 006275 328 ETE--MGVSR 335 (652)
Q Consensus 328 ~l~--~G~~~ 335 (652)
+|+ +|++.
T Consensus 201 ~l~~~~G~i~ 210 (255)
T PRK11248 201 LLSPGPGRVV 210 (255)
T ss_pred EEeCCCcEEE
Confidence 998 47763
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=341.73 Aligned_cols=222 Identities=29% Similarity=0.401 Sum_probs=187.5
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-----------eEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~-----------~i~ 164 (652)
+.+++++++++||+-.+++||||+|++||+++||||||||||||+++|+|+++|++|+|.+.|.++ .|+
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 458899999999999999999999999999999999999999999999999999999999998643 589
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
.-+|.+.+++++||.||++.+...... +...+.... ..-...+..+++.++|+
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~-------~~~~l~~~~--------------------~~~~e~~~~e~A~~~Le 135 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLG-------LSGLLGRPR--------------------ARKEEREARERARELLE 135 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhh-------hhhhhcccc--------------------chhhHHHHHHHHHHHHH
Confidence 999999999999999999754321100 111110000 00012345667888999
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHHHH
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~-~g~tvIivsHd~~~l~ 320 (652)
.+|+. +..+++..+||+|||+|+.|||||+.+|++||||||.+||.+.....+.++++ + .|.||++|.||+..+.
T Consensus 136 ~vgL~-~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm 214 (250)
T COG0411 136 FVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVM 214 (250)
T ss_pred HcCCc-hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHh
Confidence 99997 68899999999999999999999999999999999999999999998887764 3 5799999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
.+||||+||+.|++ ..+|++++...
T Consensus 215 ~l~dri~Vl~~G~~-IAeG~P~eV~~ 239 (250)
T COG0411 215 GLADRIVVLNYGEV-IAEGTPEEVRN 239 (250)
T ss_pred hhccEEEeccCCcC-cccCCHHHHhc
Confidence 99999999999998 58899887654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=343.27 Aligned_cols=194 Identities=32% Similarity=0.477 Sum_probs=168.7
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc--------eEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~--------~i~~v~Q~ 169 (652)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4789999999888899999999999999999999999999999999999999999999988542 59999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+++..|++||+...... .. .-..++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~~~l~ 117 (208)
T cd03268 81 PGFYPNLTARENLRLLARL-----------------------------------------LG--IRKKRIDEVLDVVGLK 117 (208)
T ss_pred CccCccCcHHHHHHHHHHh-----------------------------------------cC--CcHHHHHHHHHHcCCH
Confidence 9887889999998532100 00 0023455677888885
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeE
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~i 326 (652)
+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .++|||++|||++++..+||++
T Consensus 118 -~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v 196 (208)
T cd03268 118 -DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRI 196 (208)
T ss_pred -HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE
Confidence 567888999999999999999999999999999999999999999999888753 5899999999999999999999
Q ss_pred EEEcCCeEE
Q 006275 327 VETEMGVSR 335 (652)
Q Consensus 327 i~l~~G~~~ 335 (652)
+++++|++.
T Consensus 197 ~~l~~g~i~ 205 (208)
T cd03268 197 GIINKGKLI 205 (208)
T ss_pred EEEECCEEE
Confidence 999999874
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=331.56 Aligned_cols=205 Identities=27% Similarity=0.404 Sum_probs=177.5
Q ss_pred EEEEEeeeeEeCCee-eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--cceecc-----
Q 006275 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQ----- 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~-vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--~~~~~~----- 495 (652)
||++.+++++|++.. +++||||+++.||++||+|+|||||||+||+|++++.|++|.|+++|.+.. |..+.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 589999999999865 899999999999999999999999999999999999999999999998752 111111
Q ss_pred cccccCCCCCCHHHHHHHhhhhcc------HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAEDWR------IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~~~------~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+-+..++..+|+.||+.+...... ..++.++.+++++ .+..++++.+||-||||||+|||||+++|++++|||
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l-~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE 159 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL-LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE 159 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhCh-HHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC
Confidence 123456778999999998754322 3457788889998 578999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 570 PTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||||+.+++.+.+.|.+. +.+||++||++++++.+||||++|++|+++ +.|+.+....
T Consensus 160 P~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l~~ 222 (245)
T COG4555 160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEALDA 222 (245)
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE-EcCCHHHHHH
Confidence 99999999999999999865 459999999999999999999999999998 5688776543
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=372.14 Aligned_cols=213 Identities=30% Similarity=0.402 Sum_probs=180.2
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ .+|||
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 36999999999999999999999999999999999999999999999999999999999998742 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++.+|++||+........ ..+. .......+++.++++.
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~----------~~~~-------------------------~~~~~~~~~v~~~le~ 126 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHR----------SRFD-------------------------TWTETDRAAVERAMER 126 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhc----------cccc-------------------------CCCHHHHHHHHHHHHH
Confidence 9999988889999999863211000 0000 0001123456788899
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (652)
+|+. +..++++.+|||||||||+|||||+++|++|||||||+|||+.++..+.++|+ +.++|||++|||++++.++
T Consensus 127 vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~ 205 (402)
T PRK09536 127 TGVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARY 205 (402)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 9996 67899999999999999999999999999999999999999999999888764 3588999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|||+++|++|++. ..|++++++
T Consensus 206 adrii~l~~G~iv-~~G~~~ev~ 227 (402)
T PRK09536 206 CDELVLLADGRVR-AAGPPADVL 227 (402)
T ss_pred CCEEEEEECCEEE-EecCHHHHh
Confidence 9999999999984 678776654
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=357.74 Aligned_cols=209 Identities=23% Similarity=0.416 Sum_probs=175.2
Q ss_pred ceEEEeEEEEeCC-----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------- 160 (652)
.|+++|+++.|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999974 369999999999999999999999999999999999999999999998732
Q ss_pred -ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 -MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 -~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..|||++|+|. ..+..||++|+...... ..+...+...+
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~ 122 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPIN---------------------------------------LGLSEEEIENR 122 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHH---------------------------------------CCCCHHHHHHH
Confidence 25999999974 23467999998521100 00112233456
Q ss_pred HHHHhhhcCCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006275 239 VSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~~-~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (652)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .|.|||+||
T Consensus 123 ~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt 202 (287)
T PRK13637 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS 202 (287)
T ss_pred HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 778899999962 467899999999999999999999999999999999999999999999888742 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
||++++..+||||+++++|++. +.|+..++.
T Consensus 203 Hd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 233 (287)
T PRK13637 203 HSMEDVAKLADRIIVMNKGKCE-LQGTPREVF 233 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999984 678766654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=344.30 Aligned_cols=196 Identities=28% Similarity=0.450 Sum_probs=167.0
Q ss_pred eEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------ceE
Q 006275 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (652)
Q Consensus 98 i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------~~i 163 (652)
|+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999965 579999999999999999999999999999999999999999999998742 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|++.+++..|++||+...... . ........+++.+++
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 121 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEV---------------T------------------------GVPPREIRKRVPAAL 121 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHH
Confidence 9999999887788999998532100 0 000112234566778
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (652)
+.+|+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+ +.++|||+|||+++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 122 ELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 888886 56788899999999999999999999999999999999999999999988774 35899999999999999
Q ss_pred hhcCeEEEEcCCe
Q 006275 321 QLCTKIVETEMGV 333 (652)
Q Consensus 321 ~~~d~ii~l~~G~ 333 (652)
.+||++++|++|+
T Consensus 201 ~~~d~i~~l~~G~ 213 (214)
T cd03292 201 TTRHRVIALERGK 213 (214)
T ss_pred HhCCEEEEEeCCc
Confidence 9999999999886
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=358.70 Aligned_cols=206 Identities=31% Similarity=0.454 Sum_probs=181.7
Q ss_pred EEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------ccee
Q 006275 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYF 493 (652)
Q Consensus 424 ~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~ 493 (652)
.++++||++.|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+.. .+|+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 478999999999 699999999999999999999999999999999999999999999999997653 2566
Q ss_pred cccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlL 567 (652)
+|.. .+++.+|+.|++.+....+ ..+.+.++++.+++.. ..++++.+||+||||||.||+||+.+|+||||
T Consensus 84 ~~~~--~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 84 PQEP--SLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred ccCC--CCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6553 4788999999999875433 2356889999999965 45888999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---C-ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcC
Q 006275 568 DEPTNHLDIPSKEMLEEAISEY---K-GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFS 633 (652)
Q Consensus 568 DEPt~~LD~~~~~~l~~~l~~~---~-~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~ 633 (652)
||||+|||+.++..+.++|+++ + .||+++||.+++++.+||||++|++|+++ +.|..++......
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~-~~g~~~~l~~~~~ 229 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII-AEGTPEELKEKFG 229 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEE-EeCCHHHHHHhhc
Confidence 9999999999999999999865 3 49999999999999999999999999998 4577777554433
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=351.79 Aligned_cols=215 Identities=27% Similarity=0.429 Sum_probs=175.9
Q ss_pred ceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------ce
Q 006275 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (652)
Q Consensus 97 ~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------~~ 162 (652)
+|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 378999999998 7789999999999999999999999999999999999999999999998742 24
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
++|++|++.+++..||++|+.......... .. .+ . ........+++.++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~------~~-~~-------------~-----------~~~~~~~~~~~~~~ 129 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPT------WR-SL-------------L-----------GRFSEEDKERALSA 129 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccc------hh-hh-------------h-----------ccccHHHHHHHHHH
Confidence 999999998877889999985321100000 00 00 0 00001123456678
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (652)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .|+|||+|||++++
T Consensus 130 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~ 208 (243)
T TIGR02315 130 LERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL 208 (243)
T ss_pred HHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 8888986 567888999999999999999999999999999999999999999999888743 37899999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+.++||++++|++|++. +.|+.+++
T Consensus 209 ~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (243)
T TIGR02315 209 AKKYADRIVGLKAGEIV-FDGAPSEL 233 (243)
T ss_pred HHHhcCeEEEEECCEEE-ecCCHHHh
Confidence 99999999999999984 66776553
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=343.71 Aligned_cols=197 Identities=29% Similarity=0.494 Sum_probs=168.1
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------ceEEE
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAF 165 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------~~i~~ 165 (652)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 478999999998889999999999999999999999999999999999999999999998742 24999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++..|+.||+...... .. ........+++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~l~~ 122 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIK--------------VK------------------------GMSKAEAEERALELLEK 122 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHH--------------hc------------------------CCCHHHHHHHHHHHHHH
Confidence 99999887788999998532100 00 00011223445677888
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (652)
+|+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|+ +.|+|||++||+++++.++
T Consensus 123 ~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~ 201 (213)
T cd03262 123 VGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201 (213)
T ss_pred cCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 8886 46788899999999999999999999999999999999999999999988875 3588999999999999999
Q ss_pred cCeEEEEcCCe
Q 006275 323 CTKIVETEMGV 333 (652)
Q Consensus 323 ~d~ii~l~~G~ 333 (652)
||+|++|++|+
T Consensus 202 ~d~i~~l~~g~ 212 (213)
T cd03262 202 ADRVIFMDDGR 212 (213)
T ss_pred CCEEEEEeCCc
Confidence 99999999886
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=366.27 Aligned_cols=205 Identities=26% Similarity=0.426 Sum_probs=181.2
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceec
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFE 494 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~ 494 (652)
.+|+++||+++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 3699999999999888999999999999999999999999999999999999999999999998763 23555
Q ss_pred ccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 495 QNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
|+ ..+++.+||.+|+.+.... .....+.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 83 Q~--~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD 159 (353)
T TIGR03265 83 QS--YALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLD 159 (353)
T ss_pred CC--cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 54 4678899999999876432 1234678899999995 6889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 569 EPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 569 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||++||..++..+.+.|++. +.|+|+||||.+++..+||||++|++|++.. .|++++..+.
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~-~g~~~~~~~~ 225 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ-VGTPQEIYRH 225 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhC
Confidence 999999999999999988754 5699999999999999999999999999974 5777776543
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=349.73 Aligned_cols=207 Identities=28% Similarity=0.411 Sum_probs=174.7
Q ss_pred eEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEE
Q 006275 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (652)
Q Consensus 98 i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v 166 (652)
++++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999987 789999999999999999999999999999999999999999999998742 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++..|++||+..... +. ..+.......+.++++.+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~l 121 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPK---------------LL------------------------KWPKEKIRERADELLALV 121 (242)
T ss_pred ccCccccCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHc
Confidence 999988778899999852100 00 001112234566788889
Q ss_pred CCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 006275 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~ 321 (652)
|+.. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++ .|+|||++||+++++..
T Consensus 122 ~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~ 201 (242)
T cd03295 122 GLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFR 201 (242)
T ss_pred CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 9864 367888999999999999999999999999999999999999999999888753 38999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+||+|++|++|++. ..|+.+++
T Consensus 202 ~~d~i~~l~~G~i~-~~~~~~~~ 223 (242)
T cd03295 202 LADRIAIMKNGEIV-QVGTPDEI 223 (242)
T ss_pred hCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999984 55665543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=367.02 Aligned_cols=204 Identities=27% Similarity=0.422 Sum_probs=179.5
Q ss_pred EEEEEeeeeEe-CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceec
Q 006275 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFE 494 (652)
Q Consensus 424 ~i~~~~v~~~y-~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~ 494 (652)
+|+++|++++| +++.+|+++||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|.++. .+|++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999 7788999999999999999999999999999999999999999999999998763 24555
Q ss_pred ccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
|+ ..+++++||.+|+.+..... ....+.++++.+++. +..++++.+|||||||||+|||||+.+|+|||||
T Consensus 83 Q~--~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 83 QN--YALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred CC--ccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 54 46788999999998764321 124577899999994 6889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 569 EPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 569 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||++||+.++..+.+.|++. +.|+|+||||++++..+||+|++|++|++.. .|++++..+.
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~-~g~~~~~~~~ 225 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ-IGTPVEVYEK 225 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ECCHHHHHhC
Confidence 999999999999999888753 5699999999999999999999999999974 5777776543
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=350.28 Aligned_cols=214 Identities=26% Similarity=0.428 Sum_probs=175.1
Q ss_pred eEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------ceE
Q 006275 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (652)
Q Consensus 98 i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------~~i 163 (652)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 789999999999999999999999999999999999999999999998742 249
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|++.+++..||++|+.......... . ..+. .........++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~------~-~~~~------------------------~~~~~~~~~~~~~~l 129 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRST------W-RSLF------------------------GLFPKEEKQRALAAL 129 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchh------h-hhhc------------------------ccCcHHHHHHHHHHH
Confidence 99999998877889999985321100000 0 0000 000011234566788
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l 319 (652)
+.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||++|||++++
T Consensus 130 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 130 ERVGLL-DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred HHcCCh-hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 888986 567888999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHH
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
..+||++++|++|++. +.|+++++
T Consensus 209 ~~~~d~v~~l~~G~i~-~~~~~~~~ 232 (241)
T cd03256 209 REYADRIVGLKDGRIV-FDGPPAEL 232 (241)
T ss_pred HHhCCEEEEEECCEEE-eecCHHHh
Confidence 9999999999999974 66776654
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=357.42 Aligned_cols=210 Identities=22% Similarity=0.297 Sum_probs=175.5
Q ss_pred ceEEEeEEEEeCCe-----eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------- 160 (652)
+|+++|++|+|+.. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 48999999999632 59999999999999999999999999999999999999999999998743
Q ss_pred ---ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHH
Q 006275 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (652)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (652)
..|||++|+|. ..+..||.+|+...... . ..+..+..
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~--------------~-------------------------~~~~~~~~ 121 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQN--------------F-------------------------GIPKEKAE 121 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHH--------------c-------------------------CCCHHHHH
Confidence 14999999972 22456999998522100 0 01112234
Q ss_pred HHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 006275 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (652)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivs 313 (652)
.++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+ +.|.|||++|
T Consensus 122 ~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vt 201 (288)
T PRK13643 122 KIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201 (288)
T ss_pred HHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5667888889986456789999999999999999999999999999999999999999999988764 3589999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
||++++..+||||++|++|++ .+.|+.+++..
T Consensus 202 Hd~~~~~~~~dri~~l~~G~i-~~~g~~~~~~~ 233 (288)
T PRK13643 202 HLMDDVADYADYVYLLEKGHI-ISCGTPSDVFQ 233 (288)
T ss_pred cCHHHHHHhCCEEEEEECCEE-EEECCHHHHHc
Confidence 999999999999999999998 47788777643
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=347.30 Aligned_cols=207 Identities=23% Similarity=0.367 Sum_probs=173.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEe
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~ 167 (652)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 3789999999998889999999999999999999999999999999999999999999998743 2599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|++.+++..|+++|+...... . ..........+.++++.+|
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~g 121 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAAL---------------H------------------------GLSRAEARERIAALLARLG 121 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcC
Confidence 998887888999997521100 0 0001112334567788889
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~ 323 (652)
+. ...++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||++||+++++. .|
T Consensus 122 l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~ 199 (236)
T TIGR03864 122 LA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE-AD 199 (236)
T ss_pred Ch-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh-hC
Confidence 86 567888999999999999999999999999999999999999999999887742 4889999999999996 49
Q ss_pred CeEEEEcCCeEEEecCChHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+|++|++|++. ..|+.+++.
T Consensus 200 d~i~~l~~G~i~-~~~~~~~~~ 220 (236)
T TIGR03864 200 DRLVVLHRGRVL-ADGAAAELR 220 (236)
T ss_pred CEEEEEeCCeEE-EeCCHHHHH
Confidence 999999999984 567665543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=343.27 Aligned_cols=193 Identities=33% Similarity=0.487 Sum_probs=168.8
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceeccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~~ 496 (652)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|.
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 47899999998889999999999999999999999999999999999999999999999998752 2345554
Q ss_pred ccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
..+++..|+.+|+...... .....+.++++.+++. +..++++.+||||||||++|||||+.+|++||||||
T Consensus 81 --~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 81 --YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred --hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3456678999999764321 1123577889999995 567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
|++||+.++..+.++|+++ +.|||++|||++++.++||++++|++|++..
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 158 LSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999999999864 4699999999999999999999999999863
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=344.03 Aligned_cols=195 Identities=32% Similarity=0.477 Sum_probs=164.3
Q ss_pred EEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEE
Q 006275 99 KLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (652)
Q Consensus 99 ~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v 166 (652)
+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999987 789999999999999999999999999999999999999999999998742 259999
Q ss_pred eccCcc-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 167 SQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 167 ~Q~~~~-~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
+|++.. ++..|+.+|+...... . .........++.++++.
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~ 121 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLEN---------------L------------------------GLPEEEIEERVEEALEL 121 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHH
Confidence 999743 4678999998532100 0 00011123345677888
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~ 322 (652)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .|+|||++|||++++..+
T Consensus 122 ~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 122 VGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200 (211)
T ss_pred cCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 8986 567888999999999999999999999999999999999999999999988743 478999999999999999
Q ss_pred cCeEEEEcCCe
Q 006275 323 CTKIVETEMGV 333 (652)
Q Consensus 323 ~d~ii~l~~G~ 333 (652)
||+|++|++|+
T Consensus 201 ~d~i~~l~~G~ 211 (211)
T cd03225 201 ADRVIVLEDGK 211 (211)
T ss_pred CCEEEEEeCCC
Confidence 99999998874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=356.86 Aligned_cols=209 Identities=22% Similarity=0.319 Sum_probs=174.5
Q ss_pred ceEEEeEEEEeCC-----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------- 160 (652)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999974 469999999999999999999999999999999999999999999998742
Q ss_pred ---ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHH
Q 006275 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (652)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (652)
..|+|++|++. ..+..|+.||+...... . ........
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~ 122 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN---------------F------------------------GFSEDEAK 122 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHH---------------c------------------------CCCHHHHH
Confidence 25999999973 23457999998522100 0 01111233
Q ss_pred HHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 006275 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (652)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivs 313 (652)
.++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|+ +.|.|||++|
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivs 202 (287)
T PRK13641 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVT 202 (287)
T ss_pred HHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4567788899996456789999999999999999999999999999999999999999999988875 3589999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
||++++.++||+|++|++|++ ...|+.+++.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~i-~~~g~~~~~~ 233 (287)
T PRK13641 203 HNMDDVAEYADDVLVLEHGKL-IKHASPKEIF 233 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEeCCHHHHh
Confidence 999999999999999999997 4667766543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=331.94 Aligned_cols=211 Identities=20% Similarity=0.319 Sum_probs=165.9
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCC-----cEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-----GNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~-----G~i~~~~~~--------- 160 (652)
...++++|+++.|+.+.+|++||++|++++++|++||+|||||||||++..+..... |+|.++|.+
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 346999999999999999999999999999999999999999999999999987654 999998753
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
.+||+|+|.|..++ +||+||+..+.+-. ...+ .++++
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~----g~~~-----------------------------------~~lde 124 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH----GIKD-----------------------------------KELDE 124 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhh----ccch-----------------------------------HHHHH
Confidence 36999999998865 99999997543210 0000 01111
Q ss_pred HHHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
.+++.|....|. .+.+++....||||||||++|||||+.+|+|||||||||+|||.+...+.+++.+ ..-|||+|
T Consensus 125 iVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviV 204 (253)
T COG1117 125 IVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIV 204 (253)
T ss_pred HHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEE
Confidence 111111111111 1345666788999999999999999999999999999999999998777776543 46799999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
||++.-+.+++|+..++..|.++.| |+.+++..
T Consensus 205 THnmqQAaRvSD~taFf~~G~LvE~-g~T~~iF~ 237 (253)
T COG1117 205 THNMQQAARVSDYTAFFYLGELVEF-GPTDKIFT 237 (253)
T ss_pred eCCHHHHHHHhHhhhhhcccEEEEE-cCHHhhhc
Confidence 9999999999999999999998644 55455443
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=364.91 Aligned_cols=205 Identities=27% Similarity=0.450 Sum_probs=180.8
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------ccee
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYF 493 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~ 493 (652)
.++|+++|+++.|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+++
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 45799999999999888999999999999999999999999999999999999999999999998762 2355
Q ss_pred cccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlL 567 (652)
+|+ ..+++.+|+.+|+.+.... ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||
T Consensus 84 fQ~--~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 84 FQS--YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred eCC--cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 554 4678899999999976431 1134678899999994 678999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 568 DEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 568 DEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||++||+.++..+.+.|++. +.|+|+||||.+++..+||||++|++|++.. .|++++...
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~-~g~~~~~~~ 226 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ-IGSPQELYR 226 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999988753 5699999999999999999999999999974 577777654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=361.13 Aligned_cols=199 Identities=29% Similarity=0.455 Sum_probs=169.6
Q ss_pred EEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEeccCccCCC
Q 006275 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQEFEVSMS 175 (652)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~Q~~~~~~~ 175 (652)
++|+++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..+||++|++.+++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 46888889999999999999999999999999999999999999999999998743 259999999988888
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccC
Q 006275 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (652)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (652)
.||+||+..... +. ........+++.++++.+|+. +..++
T Consensus 81 ~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~ 120 (302)
T TIGR01188 81 LTGRENLEMMGR---------------LY------------------------GLPKDEAEERAEELLELFELG-EAADR 120 (302)
T ss_pred CcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-hHhCC
Confidence 999999852110 00 001112234567889999996 56789
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEcCC
Q 006275 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l~~G 332 (652)
++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|+ +.|+|||++||+++++..+||+|++|++|
T Consensus 121 ~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999988874 35899999999999999999999999999
Q ss_pred eEEEecCChHHH
Q 006275 333 VSRTYEGNYSQY 344 (652)
Q Consensus 333 ~~~~~~g~~~~~ 344 (652)
++. +.|+.+++
T Consensus 201 ~i~-~~g~~~~l 211 (302)
T TIGR01188 201 RII-AEGTPEEL 211 (302)
T ss_pred EEE-EECCHHHH
Confidence 984 66776554
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=343.60 Aligned_cols=196 Identities=24% Similarity=0.442 Sum_probs=166.1
Q ss_pred eEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------
Q 006275 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (652)
Q Consensus 98 i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------- 160 (652)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 789999999964 469999999999999999999999999999999999999999999998632
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..|+|++|++.+++..|++||+..... .. ..+.....+++
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~ 122 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLL---------------IG------------------------KKSVKEAKERA 122 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHH---------------hc------------------------CCCHHHHHHHH
Confidence 359999999887778899999853210 00 00001123345
Q ss_pred HHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006275 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (652)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (652)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .++|||++|||
T Consensus 123 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 123 YEMLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred HHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 6788888986 567888999999999999999999999999999999999999999999888752 48899999999
Q ss_pred HHHHHhhcCeEEEEcCCeE
Q 006275 316 RAFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~ 334 (652)
++++.. ||+|++|++|++
T Consensus 202 ~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 202 LELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred HHHHhh-cCEEEEEeCCEe
Confidence 999964 899999999976
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=348.76 Aligned_cols=209 Identities=26% Similarity=0.424 Sum_probs=176.1
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~ 165 (652)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 5899999999998889999999999999999999999999999999999999999999998732 35999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++..|+.||+...... .. ..+.......+.++++.
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~~~~~~l~~ 124 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQI---------------RD-----------------------DLSAEQREDRANELMEE 124 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhc---------------cc-----------------------ccCHHHHHHHHHHHHHH
Confidence 99999887778999998532100 00 00011123455677888
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (652)
+|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|+ +.|.|||++||+++++..+
T Consensus 125 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~ 203 (241)
T PRK10895 125 FHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAV 203 (241)
T ss_pred cCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence 8886 45688899999999999999999999999999999999999999998887764 4589999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
||+++++++|++. +.|+++++.
T Consensus 204 ~d~v~~l~~G~i~-~~~~~~~~~ 225 (241)
T PRK10895 204 CERAYIVSQGHLI-AHGTPTEIL 225 (241)
T ss_pred cCEEEEEeCCeEE-eeCCHHHHh
Confidence 9999999999974 677776653
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=347.30 Aligned_cols=208 Identities=26% Similarity=0.419 Sum_probs=176.4
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------------- 160 (652)
+|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 4899999999988889999999999999999999999999999999999999999999998742
Q ss_pred ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHH
Q 006275 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (652)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (652)
..|+|++|++.+++..|+.||+....... . .........++.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~-------------~-------------------------~~~~~~~~~~~~ 123 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRV-------------L-------------------------GLSKDQALARAE 123 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHH-------------c-------------------------CCCHHHHHHHHH
Confidence 25999999998877889999985211000 0 000011233566
Q ss_pred HHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 006275 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (652)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~ 317 (652)
++++.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|+ +.++|||++||+++
T Consensus 124 ~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 124 KLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 778888986 56788899999999999999999999999999999999999999999988875 35899999999999
Q ss_pred HHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
++..+||++++|++|++. +.|+++++
T Consensus 203 ~~~~~~d~i~~l~~g~i~-~~~~~~~~ 228 (242)
T PRK11124 203 VARKTASRVVYMENGHIV-EQGDASCF 228 (242)
T ss_pred HHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 999999999999999984 67776654
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=354.49 Aligned_cols=206 Identities=26% Similarity=0.380 Sum_probs=174.1
Q ss_pred ceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
+|+++|+++.|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 589999999996 4679999999999999999999999999999999999999999999998742 25999
Q ss_pred EeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 166 LSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 166 v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
++|++. .++..||++|+...... ...+......++.++++
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~ 124 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVN---------------------------------------MGLDKDEVERRVEEALK 124 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHHH
Confidence 999973 34567999998522100 00111123345667888
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (652)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|+|||++|||++++.+
T Consensus 125 ~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 125 AVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 89986 67889999999999999999999999999999999999999999999988874 348999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~ 343 (652)
+||+|++|++|++. +.|+.++
T Consensus 204 ~~d~i~~l~~G~i~-~~g~~~~ 224 (274)
T PRK13647 204 WADQVIVLKEGRVL-AEGDKSL 224 (274)
T ss_pred hCCEEEEEECCEEE-EECCHHH
Confidence 99999999999984 6677543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=339.76 Aligned_cols=207 Identities=28% Similarity=0.400 Sum_probs=182.9
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc---------cee
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP---------NYF 493 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~---------~~~ 493 (652)
+++++++++++||+-.+++||||+|++||++|||||||||||||+++|.|+++|++|+|.++|.++.. +..
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 56899999999999999999999999999999999999999999999999999999999999998732 222
Q ss_pred cccccccCCCCCCHHHHHHHhhh------------------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHH
Q 006275 494 EQNQAEALDLDKTVLETVAEAAE------------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~------------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LA 555 (652)
+-.|...+++++||.||+..+.. ....+++.++|+.+|+. +..+++..+||+|||+|+.||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhcCChhHhHHHHHH
Confidence 32344567899999999987632 11134578899999995 788999999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||+.+|++|+||||.+||.+.....+.+.|++. +.||++|-||++.+..+||||+||+.|++. ..|+|++..+.
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~eV~~d 240 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPEEVRNN 240 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHHHHhcC
Confidence 9999999999999999999999999999998765 359999999999999999999999999987 57999987654
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=360.81 Aligned_cols=213 Identities=21% Similarity=0.381 Sum_probs=178.3
Q ss_pred CCceEEEeEEEEeCC-------------eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-
Q 006275 95 SSGVKLENISKSYKG-------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~-------------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~- 160 (652)
.++|+++|++++|+. .++++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 457999999999962 469999999999999999999999999999999999999999999998742
Q ss_pred ------------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHH
Q 006275 161 ------------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226 (652)
Q Consensus 161 ------------~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (652)
.+|+|++|++ .+.+..||.+|+...... ..
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~--------------~~---------------------- 129 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT--------------YH---------------------- 129 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH--------------hc----------------------
Confidence 2599999998 466678999998532110 00
Q ss_pred HHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--
Q 006275 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-- 304 (652)
Q Consensus 227 ~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~-- 304 (652)
..++..+..+++.++++.+|+..+..++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 130 -~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 130 -PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred -cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 00111233456678889999965678999999999999999999999999999999999999999999999887742
Q ss_pred --CCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 305 --QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 305 --~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.+.|||+||||++++..+||+|++|.+|++ +..|+.+++.
T Consensus 209 ~~~~~til~iTHdl~~~~~~~dri~vl~~G~i-ve~g~~~~i~ 250 (331)
T PRK15079 209 REMGLSLIFIAHDLAVVKHISDRVLVMYLGHA-VELGTYDEVY 250 (331)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE-EEEcCHHHHH
Confidence 489999999999999999999999999988 4667766554
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=365.65 Aligned_cols=201 Identities=24% Similarity=0.322 Sum_probs=172.7
Q ss_pred EEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------ceEEEEeccC
Q 006275 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQEF 170 (652)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------~~i~~v~Q~~ 170 (652)
|.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+||+|++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 45788889999999999999999999999999999999999999999999998742 3699999999
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc
Q 006275 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (652)
Q Consensus 171 ~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (652)
++++.+||+||+...... ......+..+++.++++.+|+.
T Consensus 81 ~l~~~~TV~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~vgL~- 120 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPEL---------------------------------------LGWPEQERKEKALELLKLVGLE- 120 (363)
T ss_pred cCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhcCCc-
Confidence 998999999998632100 0011122345677889999996
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeE
Q 006275 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 251 ~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i 326 (652)
...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|. +.++|||+||||++++..+||+|
T Consensus 121 ~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 67899999999999999999999999999999999999999999999988763 34899999999999999999999
Q ss_pred EEEcCCeEEEecCChHHHHH
Q 006275 327 VETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 327 i~l~~G~~~~~~g~~~~~~~ 346 (652)
++|++|++ ...|+.+++..
T Consensus 201 ~vl~~G~i-v~~g~~~ei~~ 219 (363)
T TIGR01186 201 VIMKAGEI-VQVGTPDEILR 219 (363)
T ss_pred EEEeCCEE-EeeCCHHHHHh
Confidence 99999997 46687776544
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=359.10 Aligned_cols=212 Identities=17% Similarity=0.255 Sum_probs=175.6
Q ss_pred CCCceEEEeEEEEeCC-----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------
Q 006275 94 ISSGVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------- 160 (652)
Q Consensus 94 ~~~~i~v~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------- 160 (652)
..+.|+++|++|+|++ .++|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 3457999999999964 359999999999999999999999999999999999999999999998621
Q ss_pred ------------------ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHH
Q 006275 161 ------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221 (652)
Q Consensus 161 ------------------~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (652)
..|+||+|++. ..+..||+||+...... .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~--------------~------------------ 145 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA--------------L------------------ 145 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHh--------------c------------------
Confidence 24999999973 22456999998532100 0
Q ss_pred HHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q 006275 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY 301 (652)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~ 301 (652)
..+......++.++++.+|+.....++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++
T Consensus 146 -------~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~ 218 (320)
T PRK13631 146 -------GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218 (320)
T ss_pred -------CCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 0011122345667888899864567888999999999999999999999999999999999999999999888
Q ss_pred Hc---cCCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 302 LG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 302 L~---~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+ +.|.|||+||||++++..+||+|++|++|++. ..|+.+++.
T Consensus 219 L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~ 264 (320)
T PRK13631 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL-KTGTPYEIF 264 (320)
T ss_pred HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 74 35899999999999999999999999999984 678776654
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=345.54 Aligned_cols=202 Identities=23% Similarity=0.387 Sum_probs=168.2
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCC-----CCCCcEEEECCCC------------
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN------------ 160 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~-----~p~~G~i~~~~~~------------ 160 (652)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999998888999999999999999999999999999999999999 9999999998742
Q ss_pred ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHH
Q 006275 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (652)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (652)
..++|++|++.++ ..||+||+....... . ........+++.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~---------------~-----------------------~~~~~~~~~~~~ 121 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLH---------------G-----------------------IKLKEELDERVE 121 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhc---------------C-----------------------CCcHHHHHHHHH
Confidence 2599999998876 789999985321000 0 000011234566
Q ss_pred HHhhhcCCCcccccCC--CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCH
Q 006275 241 KLMPELGFTADDGDRL--VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDR 316 (652)
Q Consensus 241 ~ll~~lgl~~~~~~~~--~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~--g~tvIivsHd~ 316 (652)
++++.+|+. +..++. +.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++. ..|||++|||+
T Consensus 122 ~~l~~~~l~-~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 200 (227)
T cd03260 122 EALRKAALW-DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNM 200 (227)
T ss_pred HHHHHcCCC-hHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccH
Confidence 788888986 344555 5999999999999999999999999999999999999999999887532 27999999999
Q ss_pred HHHHhhcCeEEEEcCCeEEEecCC
Q 006275 317 AFLDQLCTKIVETEMGVSRTYEGN 340 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~~~~g~ 340 (652)
+++..+||+|+++++|++. +.|+
T Consensus 201 ~~~~~~~d~i~~l~~G~i~-~~g~ 223 (227)
T cd03260 201 QQAARVADRTAFLLNGRLV-EFGP 223 (227)
T ss_pred HHHHHhCCEEEEEeCCEEE-EecC
Confidence 9999999999999999974 4454
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=355.84 Aligned_cols=209 Identities=24% Similarity=0.378 Sum_probs=174.1
Q ss_pred eEEEeEEEEeCC-----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------
Q 006275 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (652)
Q Consensus 98 i~v~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------ 160 (652)
|+++|++++|++ +++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999964 359999999999999999999999999999999999999999999998742
Q ss_pred --ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 --MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 --~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..|||++|+|. ..+..||.+|+...... ...+......
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~---------------------------------------~~~~~~~~~~ 123 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKN---------------------------------------FKMNLDEVKN 123 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHH---------------------------------------cCCCHHHHHH
Confidence 25899999973 22445999998522100 0011112344
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (652)
++.++++.+|+..+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .|.|||+||
T Consensus 124 ~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vt 203 (286)
T PRK13646 124 YAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVS 203 (286)
T ss_pred HHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5677888899964567888999999999999999999999999999999999999999999888753 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
|+++++.++||||++|++|++. ..|+..++..
T Consensus 204 H~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 235 (286)
T PRK13646 204 HDMNEVARYADEVIVMKEGSIV-SQTSPKELFK 235 (286)
T ss_pred cCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999984 6787766543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=323.93 Aligned_cols=195 Identities=30% Similarity=0.410 Sum_probs=173.3
Q ss_pred EEEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------
Q 006275 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (652)
||+++||++.|++ +++|+||||+|++||++-|+||||||||||||+|++..+|++|+|+++|.++.
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 5899999999974 55999999999999999999999999999999999999999999999998863
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
.+.++| +..+.++.||+||+++.... .-..++.+.|+.+|+. +..+..|.+|||||||||+||||++.+|+
T Consensus 81 IGvVFQ--D~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 81 IGVVFQ--DFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred eeeEee--eccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 133443 45678899999999987532 1234688899999995 67889999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEee
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~ 621 (652)
+||.||||.+||+.....+++++.++ +.||||.|||.+.+.++-.|++.|++|++...
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 99999999999999999999998876 45999999999999999999999999999864
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=347.15 Aligned_cols=208 Identities=21% Similarity=0.297 Sum_probs=174.1
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCC-----CcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-----~G~i~~~~~~----------- 160 (652)
+|+++|++++|++.++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 378999999999888999999999999999999999999999999999999998 9999998742
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..++|++|++.+++ .|++||+...... .. .........++
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~ 121 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRL---------------HG-----------------------IKDKKELDEIV 121 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 25999999988766 9999998532100 00 00011223456
Q ss_pred HHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006275 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (652)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (652)
.++++.+|+.. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .++|||+|||
T Consensus 122 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH 201 (247)
T TIGR00972 122 EESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201 (247)
T ss_pred HHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEec
Confidence 67788888852 356788999999999999999999999999999999999999999999988753 2589999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+++++..+||+|++|++|++. ..|+.+++
T Consensus 202 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 230 (247)
T TIGR00972 202 NMQQAARISDRTAFFYDGELV-EYGPTEQI 230 (247)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999984 56776554
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=340.89 Aligned_cols=192 Identities=29% Similarity=0.451 Sum_probs=166.8
Q ss_pred EEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------cceecccc
Q 006275 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNYFEQNQ 497 (652)
Q Consensus 426 ~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~~~~~~~ 497 (652)
+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+.
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 46899999987 78999999999999999999999999999999999999999999999998752 34555543
Q ss_pred cccCCCCCCHHHHHHHhhhh--ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q 006275 498 AEALDLDKTVLETVAEAAED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (652)
Q Consensus 498 ~~~~~~~~tv~e~~~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD 575 (652)
.. ..+..|+.+|+...... ....++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 81 ~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 81 DY-QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred hh-hhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 21 23467999999764322 1234678899999995 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 576 IPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 576 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999865 469999999999999999999999999873
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=342.82 Aligned_cols=203 Identities=25% Similarity=0.398 Sum_probs=167.7
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEEE
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~v 166 (652)
|+++|++++|+++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 578999999998889999999999999999999999999999999999999999999998732 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++..|+++|+....... . ......++.++++.+
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~-~----------------------------------------~~~~~~~~~~~l~~~ 119 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYAR-R----------------------------------------RAKRKARLERVYELF 119 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhc-C----------------------------------------chhHHHHHHHHHHHH
Confidence 99998878889999985321100 0 000112233344444
Q ss_pred -CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 006275 247 -GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 247 -gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~ 322 (652)
++. ...++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .++|||++|||++++..+
T Consensus 120 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 198 (222)
T cd03224 120 PRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI 198 (222)
T ss_pred Hhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 233 456788999999999999999999999999999999999999999999988753 578999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~ 343 (652)
||+|+++++|++. ..|+.++
T Consensus 199 ~d~i~~l~~G~i~-~~~~~~~ 218 (222)
T cd03224 199 ADRAYVLERGRVV-LEGTAAE 218 (222)
T ss_pred ccEEEEeeCCeEE-EeCCHHH
Confidence 9999999999974 5566544
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=344.19 Aligned_cols=199 Identities=24% Similarity=0.446 Sum_probs=168.5
Q ss_pred CceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------
Q 006275 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------- 160 (652)
++|+++|+++.|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 35999999999974 469999999999999999999999999999999999999999999998732
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..++|++|++.+++..|++||+..... +. ........+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~ 124 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLL---------------IG------------------------KKKPAEINS 124 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHH---------------hc------------------------CCCHHHHHH
Confidence 359999999988778899999853210 00 001112234
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (652)
++.++++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .|+|||+||
T Consensus 125 ~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~s 203 (233)
T PRK11629 125 RALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203 (233)
T ss_pred HHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 566788889996 566888999999999999999999999999999999999999999999888743 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEE
Q 006275 314 HDRAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~ 335 (652)
|+++++.. ++++++|++|++.
T Consensus 204 H~~~~~~~-~~~~~~l~~G~i~ 224 (233)
T PRK11629 204 HDLQLAKR-MSRQLEMRDGRLT 224 (233)
T ss_pred CCHHHHHh-hCEEEEEECCEEE
Confidence 99999976 5699999999874
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=367.01 Aligned_cols=194 Identities=24% Similarity=0.344 Sum_probs=165.3
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------ceEEEEeccCccCCCC
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQEFEVSMSR 176 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------~~i~~v~Q~~~~~~~~ 176 (652)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.+++..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999998742 2599999999988889
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
||.||+...... . ........+++.++++.+|+. +..+++
T Consensus 122 Tv~enl~~~~~~---------------~------------------------~~~~~~~~~~~~e~L~~~gL~-~~~~~~ 161 (400)
T PRK10070 122 TVLDNTAFGMEL---------------A------------------------GINAEERREKALDALRQVGLE-NYAHSY 161 (400)
T ss_pred CHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCC-hhhhcC
Confidence 999998532110 0 001112234567788999996 578899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEcCC
Q 006275 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ii~l~~G 332 (652)
+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +.++|||+||||++++..+||+|++|++|
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999988774 25899999999999999999999999999
Q ss_pred eEEEecCChHHHH
Q 006275 333 VSRTYEGNYSQYV 345 (652)
Q Consensus 333 ~~~~~~g~~~~~~ 345 (652)
++. ..|+.+++.
T Consensus 242 ~i~-~~g~~~~l~ 253 (400)
T PRK10070 242 EVV-QVGTPDEIL 253 (400)
T ss_pred EEE-ecCCHHHHH
Confidence 984 667766553
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=345.60 Aligned_cols=216 Identities=29% Similarity=0.423 Sum_probs=177.9
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~ 165 (652)
+|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 5899999999988889999999999999999999999999999999999999999999998742 24999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++..|++||+......... +...+. .........++.++++.
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~-------~~~~~~------------------------~~~~~~~~~~~~~~l~~ 130 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKS-------VFASLF------------------------FRLSAEEKDRIEEVLET 130 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccc-------cccccc------------------------cccHHHHHHHHHHHHHH
Confidence 99999888888999998532110000 000000 00001123456778888
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~ 323 (652)
+|+. +..++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .++|||++||+++++..+|
T Consensus 131 ~~l~-~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~ 209 (242)
T TIGR03411 131 IGLA-DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIA 209 (242)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 8986 567888999999999999999999999999999999999999999999988753 3689999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+|+++++|++. +.|+.+++.
T Consensus 210 d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 210 DKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred CEEEEEECCeEE-eeCCHHHHh
Confidence 999999999984 667766653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=360.89 Aligned_cols=207 Identities=26% Similarity=0.393 Sum_probs=180.1
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------cc
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PN 491 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~ 491 (652)
+..+|+++||+++|+++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 345799999999999999999999999999999999999999999999999999999999999998752 23
Q ss_pred eecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
|++|+ ..+++.+|+.+|+.+....+ ....+.++++.+++. +..++++.+|||||||||+||+||+.+|++|
T Consensus 118 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL 194 (340)
T PRK13536 118 VVPQF--DNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTLARALINDPQLL 194 (340)
T ss_pred EEeCC--ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 55544 45667899999997543211 123456789999995 5689999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||||+|||+.++..+.++|+++ +.|||++||+++++.++||||++|++|++. +.|++++..+.
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~ 262 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALIDE 262 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhh
Confidence 999999999999999999999875 469999999999999999999999999997 56888876543
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=342.51 Aligned_cols=199 Identities=31% Similarity=0.485 Sum_probs=165.4
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----ceEEEEeccCccC
Q 006275 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVS 173 (652)
Q Consensus 99 ~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----~~i~~v~Q~~~~~ 173 (652)
+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.+.
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 36899999988889999999999999999999999999999999999999999999999853 3699999998653
Q ss_pred --CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcc
Q 006275 174 --MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (652)
Q Consensus 174 --~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (652)
+..|++||+......... .. ........+++.++++.+|+. +
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~----------~~-------------------------~~~~~~~~~~~~~~l~~~~l~-~ 124 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKG----------LF-------------------------RRLSKADKAKVDEALERVGLS-E 124 (213)
T ss_pred cCCCCcHHHHHHhccccccc----------cc-------------------------cCCCHHHHHHHHHHHHHcCCH-H
Confidence 347999998532110000 00 000011234566788888986 5
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEEE
Q 006275 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (652)
Q Consensus 252 ~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~ii~ 328 (652)
..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .++|||++|||++++.++||+|++
T Consensus 125 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 125 LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 67888999999999999999999999999999999999999999999888743 578999999999999999999999
Q ss_pred EcCCe
Q 006275 329 TEMGV 333 (652)
Q Consensus 329 l~~G~ 333 (652)
|++|.
T Consensus 205 l~~~~ 209 (213)
T cd03235 205 LNRTV 209 (213)
T ss_pred EcCcE
Confidence 98864
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=342.48 Aligned_cols=199 Identities=27% Similarity=0.400 Sum_probs=168.6
Q ss_pred CceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------
Q 006275 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------- 160 (652)
++|+++|++++|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 46999999999975 359999999999999999999999999999999999999999999998732
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..++|++|++.+++..|+.||+..... .. ........+
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~ 125 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPAL---------------LR------------------------GESSRQSRN 125 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHH---------------hc------------------------CCCHHHHHH
Confidence 259999999988777899999853210 00 000112234
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEe
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIIS 313 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivs 313 (652)
++.++++.+|+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|+ +.|.|||++|
T Consensus 126 ~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 204 (228)
T PRK10584 126 GAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVT 204 (228)
T ss_pred HHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 567788888986 56788899999999999999999999999999999999999999999998874 3488999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEE
Q 006275 314 HDRAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~ 335 (652)
||++++. .||+++++++|++.
T Consensus 205 H~~~~~~-~~d~i~~l~~g~i~ 225 (228)
T PRK10584 205 HDLQLAA-RCDRRLRLVNGQLQ 225 (228)
T ss_pred cCHHHHH-hCCEEEEEECCEEE
Confidence 9999985 59999999999874
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=356.67 Aligned_cols=205 Identities=26% Similarity=0.400 Sum_probs=177.2
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------cce
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNY 492 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~ 492 (652)
..+|+++|++++|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 34799999999999889999999999999999999999999999999999999999999999997652 235
Q ss_pred ecccccccCCCCCCHHHHHHHhhhh--cc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
++|+ ..+++..|+.+|+...... .. ...+.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 82 v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 82 VPQF--DNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred Eecc--ccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5554 3456678999999753211 11 23466789999985 56799999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||||+|||+.++..+.++|+++ +.|||++|||++++..+|||+++|++|++. ..|++++...
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 224 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI-AEGRPHALID 224 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999875 469999999999999999999999999987 4688777654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=343.80 Aligned_cols=202 Identities=26% Similarity=0.414 Sum_probs=166.0
Q ss_pred ceEEEeEEEEeCCe----eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------
Q 006275 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------ 160 (652)
+|+++|++++|++. ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999765 79999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 -MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 -~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..++|++|++ .+.+..|+++|+....... .. .. .......
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~--------------~~--~~---------------------~~~~~~~ 123 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH--------------GK--LS---------------------KKEARKE 123 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhc--------------cC--Cc---------------------HHHHHHH
Confidence 2599999998 3556789999985321000 00 00 0000011
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (652)
.+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|+|||++|
T Consensus 124 ~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 203 (228)
T cd03257 124 AVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFIT 203 (228)
T ss_pred HHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 1235677788854567888999999999999999999999999999999999999999999988753 388999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEE
Q 006275 314 HDRAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~ 335 (652)
|+++++..+||+|++|++|++.
T Consensus 204 H~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 204 HDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred CCHHHHHHhcCeEEEEeCCEEE
Confidence 9999999999999999999874
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=340.37 Aligned_cols=198 Identities=28% Similarity=0.391 Sum_probs=171.2
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------cceecc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQ 495 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~~ 495 (652)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 57899999999889999999999999999999999999999999999999999999999997652 234454
Q ss_pred cccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+ ..+++..|+.+|+....... ....+.++++.+++. +..++++.+|||||||||+||||++.+|++|||||
T Consensus 81 ~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE 157 (220)
T cd03265 81 D--LSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157 (220)
T ss_pred C--ccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4 34566789999997642211 123578899999995 66799999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChh
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~ 626 (652)
||++||+.+++.+.++|++. +.|||+||||++++..+|||+++|++|++.. .|+++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 217 (220)
T cd03265 158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA-EGTPE 217 (220)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-eCChH
Confidence 99999999999999998763 5699999999999999999999999999974 35544
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=345.42 Aligned_cols=203 Identities=23% Similarity=0.359 Sum_probs=171.7
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v 166 (652)
.|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 5899999999988889999999999999999999999999999999999999999999998742 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.++. .|+++|+...... . . ....++.++++.+
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~---------------~--------------------------~--~~~~~~~~~l~~~ 118 (241)
T PRK14250 83 FQQPHLFE-GTVKDNIEYGPML---------------K--------------------------G--EKNVDVEYYLSIV 118 (241)
T ss_pred ecCchhch-hhHHHHHhcchhh---------------c--------------------------C--cHHHHHHHHHHHc
Confidence 99987754 6999997421000 0 0 0012345677888
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhh
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~ 322 (652)
|+..+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.+.|++ .|.|||++|||++++..+
T Consensus 119 ~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~ 198 (241)
T PRK14250 119 GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI 198 (241)
T ss_pred CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHh
Confidence 8864467888999999999999999999999999999999999999999999887753 489999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||+|+++++|++. ..|...++
T Consensus 199 ~d~i~~l~~G~i~-~~~~~~~~ 219 (241)
T PRK14250 199 GDYTAFLNKGILV-EYAKTYDF 219 (241)
T ss_pred CCEEEEEeCCEEE-EeCCHHHH
Confidence 9999999999985 45655444
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=348.46 Aligned_cols=207 Identities=29% Similarity=0.390 Sum_probs=174.7
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v 166 (652)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 4899999999998889999999999999999999999999999999999999999999998742 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++..|++||+....... ..........+.++++.+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~ 122 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPH---------------------------------------GLSRAEDDALVAAALAQV 122 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhccc---------------------------------------CCCcHHHHHHHHHHHHHc
Confidence 99988877889999985321000 000011223456778888
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHc------cCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCH
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDR 316 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~------~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~ 316 (652)
|+. +..++.+.+|||||||||+|||||+ .+|++|||||||+|||+.++..+.++|+ +.|.|||++|||+
T Consensus 123 ~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 123 DLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred CCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 886 5678899999999999999999999 5999999999999999999999888764 4588999999999
Q ss_pred HHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 317 AFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+++..+||+|++|++|++. ..|+++++
T Consensus 202 ~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 228 (258)
T PRK13548 202 NLAARYADRIVLLHQGRLV-ADGTPAEV 228 (258)
T ss_pred HHHHHhcCEEEEEECCEEE-eeCCHHHH
Confidence 9999999999999999874 56766554
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=344.26 Aligned_cols=203 Identities=28% Similarity=0.447 Sum_probs=175.0
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 489999999999889999999999999999999999999999999999999999999999997652 234444
Q ss_pred cccccCCCCCCHHHHHHHhhhh--------c--cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 496 NQAEALDLDKTVLETVAEAAED--------W--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~--------~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
+ ..+++..|+.+|+...... . ..+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|
T Consensus 82 ~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 158 (239)
T cd03296 82 H--YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKVL 158 (239)
T ss_pred C--CcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3 3456678999999764321 1 123467889999994 6678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||||++||+.+++.+.++|.++ +.|||+||||++++..+||++++|++|++. ..|++++..+
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 226 (239)
T cd03296 159 LLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE-QVGTPDEVYD 226 (239)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHHhc
Confidence 999999999999999999999864 469999999999999999999999999997 4577776543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=347.40 Aligned_cols=208 Identities=25% Similarity=0.423 Sum_probs=175.7
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------------
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------- 160 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------------- 160 (652)
|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 478999999988889999999999999999999999999999999999999999999988632
Q ss_pred ------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhc
Q 006275 161 ------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (652)
Q Consensus 161 ------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (652)
..++|++|++.+++..|+.+|+....... . ......
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--------------~------------------------~~~~~~ 122 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--------------L------------------------GMARAE 122 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--------------c------------------------CCCHHH
Confidence 25999999998878899999985321000 0 001112
Q ss_pred HHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 006275 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (652)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvI 310 (652)
....+.++++.+|+. +..++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .|.|||
T Consensus 123 ~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 201 (252)
T TIGR03005 123 AEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTML 201 (252)
T ss_pred HHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 234566778888986 567888999999999999999999999999999999999999999999887743 489999
Q ss_pred EEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 311 ivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
++||+++++..+|||+++|++|++. ..|+++++.
T Consensus 202 ivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T TIGR03005 202 LVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEIF 235 (252)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999984 667766654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=357.76 Aligned_cols=211 Identities=22% Similarity=0.387 Sum_probs=177.2
Q ss_pred CceEEEeEEEEeCC----------eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----
Q 006275 96 SGVKLENISKSYKG----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----- 160 (652)
+.|+++|+++.|+. .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 46999999999962 469999999999999999999999999999999999999999999998742
Q ss_pred --------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhC
Q 006275 161 --------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (652)
Q Consensus 161 --------~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (652)
.+|+|++|++ .+.+..|+.+++...+... ...
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--------------------------------------~~~ 125 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--------------------------------------TSL 125 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--------------------------------------cCC
Confidence 2599999998 4666789988874221000 001
Q ss_pred ChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCC
Q 006275 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (652)
Q Consensus 231 ~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g 306 (652)
...+...++.++++.+|+.....++++.+|||||||||+|||||+.+|++||+||||++||+.++.++.++|+ +.|
T Consensus 126 ~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g 205 (327)
T PRK11308 126 SAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELG 205 (327)
T ss_pred CHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcC
Confidence 1122345677889999996556799999999999999999999999999999999999999999999988774 358
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 307 ~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.|||+||||++.+.++||+|++|.+|+++ ..|+.+++.
T Consensus 206 ~til~iTHdl~~~~~~adrv~vm~~G~iv-e~g~~~~~~ 243 (327)
T PRK11308 206 LSYVFISHDLSVVEHIADEVMVMYLGRCV-EKGTKEQIF 243 (327)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999999984 667765543
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=349.42 Aligned_cols=209 Identities=25% Similarity=0.463 Sum_probs=173.4
Q ss_pred ceEEEeEEEEeC---------CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------
Q 006275 97 GVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~---------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------- 160 (652)
+|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 589999999995 3579999999999999999999999999999999999999999999998742
Q ss_pred ------ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCCh
Q 006275 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (652)
Q Consensus 161 ------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (652)
..|+|++|++. +.+..|++||+...... .. .+..
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~--------------~~------------------------~~~~ 123 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH--------------LT------------------------SLDE 123 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH--------------hc------------------------CCCH
Confidence 25999999973 44568999997522100 00 0011
Q ss_pred hcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCe
Q 006275 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVP 308 (652)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~t 308 (652)
.....++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|+|
T Consensus 124 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 203 (265)
T TIGR02769 124 SEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTA 203 (265)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 122345667888889864567888999999999999999999999999999999999999999988887743 4899
Q ss_pred EEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 309 vIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||+||||++++..+||++++|++|++. ..|+.+++
T Consensus 204 iiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 238 (265)
T TIGR02769 204 YLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQL 238 (265)
T ss_pred EEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHH
Confidence 999999999999999999999999884 66776554
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=344.36 Aligned_cols=213 Identities=24% Similarity=0.318 Sum_probs=173.8
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCC--CCCCcEEEECCCC-----------ceEE
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKIA 164 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p~~G~i~~~~~~-----------~~i~ 164 (652)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.+ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 47899999999888999999999999999999999999999999999995 7999999998742 2389
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+++..|+.+|+....... . ..... ...+.....+++.++++
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~----------~-~~~~~---------------------~~~~~~~~~~~~~~~l~ 128 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNAR----------R-SARGE---------------------EPLDLLDFLKLLKAKLA 128 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHh----------h-ccccc---------------------ccccHHHHHHHHHHHHH
Confidence 9999998888889999985321100 0 00000 00011123346678889
Q ss_pred hcCCCcccccCCCC-CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 006275 245 ELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~lgl~~~~~~~~~~-~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~ 320 (652)
.+|+.....++++. +|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .|+|||+||||++++.
T Consensus 129 ~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 129 LLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLN 208 (243)
T ss_pred HcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHH
Confidence 99996455677776 5999999999999999999999999999999999999999988753 4789999999999999
Q ss_pred hh-cCeEEEEcCCeEEEecCChHH
Q 006275 321 QL-CTKIVETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 321 ~~-~d~ii~l~~G~~~~~~g~~~~ 343 (652)
.+ ||++++|++|++. +.|++++
T Consensus 209 ~~~~d~i~~l~~G~i~-~~g~~~~ 231 (243)
T TIGR01978 209 YIKPDYVHVLLDGRIV-KSGDVEL 231 (243)
T ss_pred hhcCCeEEEEeCCEEE-EecCHHH
Confidence 98 8999999999984 6677553
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=362.47 Aligned_cols=207 Identities=26% Similarity=0.436 Sum_probs=181.1
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cce
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNY 492 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~ 492 (652)
..++|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 345699999999999888999999999999999999999999999999999999999999999998763 235
Q ss_pred ecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
++|+ ..+++.+||.+|+.+..... ...++.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 91 vfQ~--~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL 167 (375)
T PRK09452 91 VFQS--YALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL 167 (375)
T ss_pred EecC--cccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5554 46788999999998764311 123577889999995 68899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 567 LDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||||++||..++..|.+.|++. +.|+|+||||.+++..+||||++|++|++.. .|+++++++.
T Consensus 168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~~i~~~ 235 (375)
T PRK09452 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ-DGTPREIYEE 235 (375)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhC
Confidence 99999999999999999988754 5699999999999999999999999999974 4777765543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=346.72 Aligned_cols=200 Identities=28% Similarity=0.416 Sum_probs=173.6
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----cceeccc
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQN 496 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----~~~~~~~ 496 (652)
+++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|.
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 45699999999999888999999999999999999999999999999999999999999999987642 3455554
Q ss_pred ccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q 006275 497 QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~ 576 (652)
..+++..|+.+|+..........++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus 90 --~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 90 --ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166 (257)
T ss_pred --ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 34556689999998643221234678899999995 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCCh
Q 006275 577 PSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625 (652)
Q Consensus 577 ~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~ 625 (652)
.++..+.+.|.++ +.|||+||||++++..+||+|++|++|++.. .++.
T Consensus 167 ~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~-~~~~ 218 (257)
T PRK11247 167 LTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL-DLTV 218 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-eccc
Confidence 9999999988754 5699999999999999999999999999974 3443
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=351.85 Aligned_cols=210 Identities=24% Similarity=0.389 Sum_probs=176.4
Q ss_pred CceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------ce
Q 006275 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MK 162 (652)
Q Consensus 96 ~~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------~~ 162 (652)
++|+++|++++|+ ++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4699999999996 5679999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 163 i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
++|++|++. ..+..|++||+...... . .........++.+
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~--------------~-------------------------~~~~~~~~~~~~~ 124 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVN--------------L-------------------------KLPEDEVRKRVDN 124 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHH--------------c-------------------------CCCHHHHHHHHHH
Confidence 999999974 23567999998532100 0 0011122345667
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~ 317 (652)
+++.+|+. ...++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .|.|||++||+++
T Consensus 125 ~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 125 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred HHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 88889996 578899999999999999999999999999999999999999999988887642 4899999999999
Q ss_pred HHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
++..+|||+++|++|++ .+.|+++++..
T Consensus 204 ~~~~~~dri~~l~~G~i-~~~g~~~~~~~ 231 (283)
T PRK13636 204 IVPLYCDNVFVMKEGRV-ILQGNPKEVFA 231 (283)
T ss_pred HHHHhCCEEEEEECCEE-EEeCCHHHHhc
Confidence 99999999999999998 47788776543
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=350.57 Aligned_cols=208 Identities=21% Similarity=0.291 Sum_probs=172.4
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------ceEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------~~i~ 164 (652)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 3789999999988889999999999999999999999999999999999999999999998743 2499
Q ss_pred EEeccCcc-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 165 ~v~Q~~~~-~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
|++|++.. .+..|+.+|+...... . .........++.+++
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~--------------~-------------------------~~~~~~~~~~~~~~l 121 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRN--------------L-------------------------GVPEAEITRRVDEAL 121 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHH--------------c-------------------------CCCHHHHHHHHHHHH
Confidence 99999753 2445788887421100 0 000111233456678
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~ 320 (652)
+.+|+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .|.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 122 TLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred HHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 888885 567888999999999999999999999999999999999999999999888753 4889999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.+||++++|++|++. ..|+.+++.
T Consensus 201 ~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (271)
T PRK13638 201 EISDAVYVLRQGQIL-THGAPGEVF 224 (271)
T ss_pred HhCCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999974 667766543
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=349.42 Aligned_cols=211 Identities=17% Similarity=0.378 Sum_probs=173.9
Q ss_pred CceEEEeEEEEeCC---------eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------
Q 006275 96 SGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------ 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~---------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------ 160 (652)
++|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46999999999962 469999999999999999999999999999999999999999999998742
Q ss_pred ----ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhc
Q 006275 161 ----MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (652)
Q Consensus 161 ----~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (652)
..++|++|++. +.+..|+.+++....... .......
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--------------------------------------~~~~~~~ 124 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN--------------------------------------TDLEPEQ 124 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc--------------------------------------cCCCHHH
Confidence 25999999974 445668888874211000 0001112
Q ss_pred HHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 006275 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (652)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvI 310 (652)
..+.+.++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .|.|||
T Consensus 125 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvi 204 (267)
T PRK15112 125 REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204 (267)
T ss_pred HHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 2345667888999854567788899999999999999999999999999999999999999999888753 488999
Q ss_pred EEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 311 ivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
++||+++++..+||+|++|++|++. ..|+++++.
T Consensus 205 ivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 238 (267)
T PRK15112 205 YVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVL 238 (267)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHh
Confidence 9999999999999999999999984 667766654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=363.57 Aligned_cols=203 Identities=29% Similarity=0.448 Sum_probs=177.7
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
.|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 489999999999889999999999999999999999999999999999999999999999998752 235555
Q ss_pred cccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+ ..+++.+|+.+|+.+.... ....++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~--~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE 159 (369)
T PRK11000 83 S--YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (369)
T ss_pred C--cccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4 4577789999999875421 1124578899999995 67899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||++||+.+++.+.+.|+++ +.|+|+||||++++..+||++++|++|++.. .|++++...
T Consensus 160 Pts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~-~g~~~~i~~ 223 (369)
T PRK11000 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELYH 223 (369)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 99999999999999888754 5699999999999999999999999999974 577776543
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=344.73 Aligned_cols=211 Identities=22% Similarity=0.290 Sum_probs=175.1
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC----------c
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------M 161 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~----------~ 161 (652)
.|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 58999999999988899999999999999999999999999999999999974 69999998742 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
.|+|++|++.+++..|+.||+....... . .. ....+..+.+.+
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~-----------~-~~-------------------------~~~~~~~~~~~~ 125 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLN-----------R-LV-------------------------KSKKELQERVRW 125 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhc-----------c-cc-------------------------CCHHHHHHHHHH
Confidence 5999999988778899999985321100 0 00 000112344567
Q ss_pred HhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCH
Q 006275 242 LMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDR 316 (652)
Q Consensus 242 ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~ 316 (652)
+++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++||++
T Consensus 126 ~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 205 (250)
T PRK14247 126 ALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFP 205 (250)
T ss_pred HHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 778888742 346888999999999999999999999999999999999999999999988753 378999999999
Q ss_pred HHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+++..+||+|++|++|++ ...|+.+++.
T Consensus 206 ~~~~~~~d~i~~l~~G~i-~~~g~~~~~~ 233 (250)
T PRK14247 206 QQAARISDYVAFLYKGQI-VEWGPTREVF 233 (250)
T ss_pred HHHHHhcCEEEEEECCeE-EEECCHHHHH
Confidence 999999999999999997 4667766553
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=345.68 Aligned_cols=211 Identities=25% Similarity=0.389 Sum_probs=174.7
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------- 160 (652)
++|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 36999999999988889999999999999999999999999999999999999999999998754
Q ss_pred ----ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhc
Q 006275 161 ----MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (652)
Q Consensus 161 ----~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (652)
..++|++|++. +....|+.+|+...+.. .. ..+...
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~--------------~~------------------------~~~~~~ 126 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMA--------------VG------------------------ARHYGD 126 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHH--------------hc------------------------cCcHHH
Confidence 14999999974 44566888887421100 00 000011
Q ss_pred HHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEE
Q 006275 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMV 310 (652)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvI 310 (652)
....+.++++.+|+.....++.+.+|||||||||+|||||+.+|+||||||||+|||+.+++++.+.|+ +.|.|||
T Consensus 127 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 206 (258)
T PRK11701 127 IRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 234456778888886446788899999999999999999999999999999999999999999988764 2488999
Q ss_pred EEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 311 ivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
++||+++++..+||+|+++++|++. +.|+.+++.
T Consensus 207 ~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 240 (258)
T PRK11701 207 IVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQVL 240 (258)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999984 667766543
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=342.73 Aligned_cols=202 Identities=30% Similarity=0.421 Sum_probs=173.7
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------ccee
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYF 493 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~~ 493 (652)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 46899999998888999999999999999999999999999999999999999999999997652 1234
Q ss_pred cccccccCCCCCCHHHHHHHhhhhc----------------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHH
Q 006275 494 EQNQAEALDLDKTVLETVAEAAEDW----------------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~~----------------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAra 557 (652)
+|+ ..+++..|+.+|+....... ....+.++++.+++. ...++++.+|||||||||+||||
T Consensus 81 ~q~--~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~a 157 (236)
T cd03219 81 FQI--PRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEIARA 157 (236)
T ss_pred ecc--cccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHHHHH
Confidence 443 34667789999997643211 123467889999995 56789999999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++. ..|++++...
T Consensus 158 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 232 (236)
T cd03219 158 LATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI-AEGTPDEVRN 232 (236)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-eecCHHHhcc
Confidence 99999999999999999999999999999865 469999999999999999999999999997 4577776543
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=351.74 Aligned_cols=206 Identities=27% Similarity=0.343 Sum_probs=174.3
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------ceEE
Q 006275 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIA 164 (652)
Q Consensus 99 ~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------~~i~ 164 (652)
.++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 56799999999999999999999999999999999999999999999999999999998732 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+++..|+.||+...... . .........++.++++
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~ 146 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEV---------------Q------------------------GVPRAEREERAAEALE 146 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHH
Confidence 999999887788999998532100 0 0001112345667788
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~ 320 (652)
.+|+. +..++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||++||+++++.
T Consensus 147 ~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 147 LVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred HcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 88986 567889999999999999999999999999999999999999999999887643 3799999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
++||++++|++|++. ..|+.+++.
T Consensus 226 ~~~d~v~~l~~G~i~-~~g~~~~~~ 249 (269)
T cd03294 226 RLGDRIAIMKDGRLV-QVGTPEEIL 249 (269)
T ss_pred HhcCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999984 567665543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=360.17 Aligned_cols=204 Identities=28% Similarity=0.427 Sum_probs=179.1
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 489999999999889999999999999999999999999999999999999999999999998762 235555
Q ss_pred cccccCCCCCCHHHHHHHhhhh------c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 496 NQAEALDLDKTVLETVAEAAED------W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~------~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
+ ..+++.+|+.+|+.+.... . ...++.++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 82 ~--~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalArAL~~~P~ll 158 (353)
T PRK10851 82 H--YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQIL 158 (353)
T ss_pred C--cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4 4677889999999875321 1 124577899999995 6789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||||++||+.++..+.+.|++. +.|+|+||||++++..+||||++|++|++.. .|+++++++.
T Consensus 159 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~-~g~~~~i~~~ 227 (353)
T PRK10851 159 LLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ-AGTPDQVWRE 227 (353)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhC
Confidence 999999999999999999988754 4699999999999999999999999999974 5777776543
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=344.57 Aligned_cols=210 Identities=19% Similarity=0.295 Sum_probs=171.2
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~--------- 160 (652)
.+.|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 356999999999988889999999999999999999999999999999999964 589999998732
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..++|++|++.+++ .|+.||+...+... .. .......+
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~~-----------------------~~~~~~~~ 124 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRVN---------------GV-----------------------KDKAYLAE 124 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHHc---------------CC-----------------------CCHHHHHH
Confidence 25999999987765 59999985321100 00 00001223
Q ss_pred HHHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++
T Consensus 125 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~ 204 (253)
T PRK14242 125 RVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIV 204 (253)
T ss_pred HHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4555666777632 245778899999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|||++++..+||+|++|++|++. ..|..+++
T Consensus 205 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 235 (253)
T PRK14242 205 THNMQQAARVSDVTAFFYMGKLI-EVGPTEQI 235 (253)
T ss_pred EecHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999984 56766554
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=338.27 Aligned_cols=193 Identities=33% Similarity=0.472 Sum_probs=168.3
Q ss_pred EEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----cceecc
Q 006275 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQ 495 (652)
Q Consensus 425 i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----~~~~~~ 495 (652)
|+++|+++.|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 478999999987 78999999999999999999999999999999999999999999999998752 245555
Q ss_pred cccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
. ..+++..|+.+|+...... ...+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 81 ~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 81 Q--DALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred c--cccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 4 3455678999999764321 1134577899999995 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEe--CCEEEe
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK--GSNLQD 620 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~--~g~i~~ 620 (652)
||++||+.++..+.++|+++ +.|||+||||++++..+||++++|+ +|++.+
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 99999999999999999764 4699999999999999999999999 799864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=344.72 Aligned_cols=201 Identities=28% Similarity=0.402 Sum_probs=172.9
Q ss_pred EEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------
Q 006275 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (652)
+|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 478999999998 778999999999999999999999999999999999999999999999997652
Q ss_pred cceecccccccCCCCCCHHHHHHHhhh--------------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHH
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|++|+ ..+++..|+.+|+..... .....++.++++.+++. ...++++.+|||||||||+||
T Consensus 81 i~~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 81 IGMIFQH--YNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred eEEEcCC--CcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 1344443 345667899999975321 11234577889999994 667899999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
|||+.+|++|||||||++||+.++..+.+.|++. +.|||+||||++++.++||++++|++|++. ..|++++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAPSEL 233 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHh
Confidence 9999999999999999999999999999999764 459999999999999999999999999997 45776654
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=346.21 Aligned_cols=222 Identities=20% Similarity=0.370 Sum_probs=177.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~ 165 (652)
+|+++|+++.|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence 5999999999998889999999999999999999999999999999999999999999998742 24899
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++..|+.||+......... ......+... +.. .....+....+.++++.
T Consensus 85 ~~q~~~~~~~~tv~enl~~~~~~~~~-----~~~~~~~~~~----~~~---------------~~~~~~~~~~~~~~l~~ 140 (255)
T PRK11300 85 TFQHVRLFREMTVIENLLVAQHQQLK-----TGLFSGLLKT----PAF---------------RRAESEALDRAATWLER 140 (255)
T ss_pred eccCcccCCCCcHHHHHHHhhhcccc-----chhhhhhccc----ccc---------------ccchhHHHHHHHHHHHh
Confidence 99999888888999998632110000 0000000000 000 00000122456677888
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHHHHh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~-~g~tvIivsHd~~~l~~ 321 (652)
+|+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+ + .++|||++||+++++.+
T Consensus 141 ~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~ 219 (255)
T PRK11300 141 VGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMG 219 (255)
T ss_pred CChh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHH
Confidence 8985 56789999999999999999999999999999999999999999999988874 3 38899999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+||+++++++|++. +.|+.+++
T Consensus 220 ~~d~i~~l~~g~i~-~~~~~~~~ 241 (255)
T PRK11300 220 ISDRIYVVNQGTPL-ANGTPEEI 241 (255)
T ss_pred hCCEEEEEECCeEE-ecCCHHHH
Confidence 99999999999984 66765554
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=341.91 Aligned_cols=204 Identities=23% Similarity=0.332 Sum_probs=168.0
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEEE
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~v 166 (652)
|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 578999999998889999999999999999999999999999999999999999999998632 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++..|+.+|+...+... .. .....+.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~-~~-----------------------------------------~~~~~~~~~l~~~ 118 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAAL-PR-----------------------------------------RSRKIPDEIYELF 118 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhc-Cc-----------------------------------------chHHHHHHHHHHH
Confidence 99998877789999985322100 00 0001122334444
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhh
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~ 322 (652)
+......++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++||+++++..+
T Consensus 119 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 198 (230)
T TIGR03410 119 PVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAREL 198 (230)
T ss_pred HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHh
Confidence 3212456788999999999999999999999999999999999999999999988753 478999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||+|+++++|++. ..|+.+++
T Consensus 199 ~d~v~~l~~g~i~-~~~~~~~~ 219 (230)
T TIGR03410 199 ADRYYVMERGRVV-ASGAGDEL 219 (230)
T ss_pred CCEEEEEECCEEE-EECCHHHc
Confidence 9999999999984 66765553
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=347.61 Aligned_cols=205 Identities=29% Similarity=0.377 Sum_probs=176.4
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (652)
..+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 34799999999999889999999999999999999999999999999999999999999999997652
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhh---cc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccC
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~ 561 (652)
.+|++|+ ..+++..|+.+|+...... .. ...+.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 85 ~i~~v~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~ 161 (269)
T PRK11831 85 RMSMLFQS--GALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALARAIALE 161 (269)
T ss_pred cEEEEecc--cccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 1244443 3456678999999764211 11 23466789999995 677999999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|++|||||||++||+.+++.+.++|+++ +.|||+||||++++..+||++++|++|++. +.|+.+++.+
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 233 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV-AHGSAQALQA 233 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999999999865 469999999999999999999999999997 4577777654
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=342.46 Aligned_cols=207 Identities=23% Similarity=0.332 Sum_probs=169.5
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~ 164 (652)
.+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.. ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 36999999999988889999999999999999999999999999999999999999999998742 2499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+++..||.+|+....... . . ......+.++++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~-~-~---------------------------------------~~~~~~~~~~l~ 122 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFA-E-R---------------------------------------DQFQERIKWVYE 122 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhcc-C-h---------------------------------------hHHHHHHHHHHH
Confidence 9999988777789999985321000 0 0 000111223333
Q ss_pred hc-CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006275 245 EL-GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~l-gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (652)
.+ ++. +..++++.+||||||||++|||||+.+|+||||||||+|||+.+++.+.++|+ +.|.|||++||+++++.
T Consensus 123 ~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (237)
T PRK11614 123 LFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQAL 201 (237)
T ss_pred HHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence 33 232 34566789999999999999999999999999999999999999999988764 35899999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
++||+++++++|++ .+.|+.++..
T Consensus 202 ~~~d~i~~l~~G~i-~~~~~~~~~~ 225 (237)
T PRK11614 202 KLADRGYVLENGHV-VLEDTGDALL 225 (237)
T ss_pred hhCCEEEEEeCCEE-EeeCCHHHHh
Confidence 99999999999998 4678766553
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=318.66 Aligned_cols=207 Identities=24% Similarity=0.383 Sum_probs=176.0
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q~ 169 (652)
|.+.+|.++|+..+. ..+++|++||++||+||+||||||||++|+|+..|.+|+|.++|.+ .-+++++|+
T Consensus 2 l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQE 79 (231)
T COG3840 2 LALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE 79 (231)
T ss_pred ccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhc
Confidence 678999999987652 4678999999999999999999999999999999999999999864 249999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
.+++..+||.+|+..+....... + .+-.+++...+..+|+.
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL--------------------------------------~-a~~r~~v~~aa~~vGl~ 120 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKL--------------------------------------N-AEQREKVEAAAAQVGLA 120 (231)
T ss_pred cccchhhhhhhhhcccCCccccc--------------------------------------C-HHHHHHHHHHHHHhChh
Confidence 99999999999986433221000 0 01234566778888986
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCe
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d~ 325 (652)
...+|.+.+|||||||||+|||+|+.+-+|||||||||+|||.-+.++..++ .+.+.|+++|||.++.+.+++++
T Consensus 121 -~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~ 199 (231)
T COG3840 121 -GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADR 199 (231)
T ss_pred -hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhc
Confidence 6789999999999999999999999999999999999999999998887765 35789999999999999999999
Q ss_pred EEEEcCCeEEEecCChHHHHHH
Q 006275 326 IVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 326 ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
++++++|++ .+.|...+++..
T Consensus 200 ~~fl~~Gri-~~~g~~~~~~~~ 220 (231)
T COG3840 200 VVFLDNGRI-AAQGSTQELLSG 220 (231)
T ss_pred eEEEeCCEE-EeeccHHHHhcc
Confidence 999999998 588877766543
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=316.59 Aligned_cols=203 Identities=28% Similarity=0.454 Sum_probs=176.2
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc--------ceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------NYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------~~~~~ 495 (652)
+|.+++|.++|+..+. .++++|+.||++||+||+||||||||++|+|+..|.+|.|+++|.+... ..++
T Consensus 1 ~l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF- 77 (231)
T COG3840 1 MLALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF- 77 (231)
T ss_pred CccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh-
Confidence 3678899999976543 5789999999999999999999999999999999999999999988631 1222
Q ss_pred cccccCCCCCCHHHHHHHhhh------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
|+.+++..+||.+|+..+.. ....+.+..++.++|+ ..+.++.|.+|||||||||+|||+|+++-+||+|||
T Consensus 78 -QEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl-~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE 155 (231)
T COG3840 78 -QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL-AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE 155 (231)
T ss_pred -hccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhCh-hhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC
Confidence 45678999999999988643 2234568889999999 578899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
|+++|||.-+..|..++.+. +.|++||||..+.+.++++|++++++|+|. +.|..++.+...
T Consensus 156 PFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~~~~~ 221 (231)
T COG3840 156 PFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELLSGK 221 (231)
T ss_pred chhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHHhccC
Confidence 99999999999999988755 459999999999999999999999999997 678888766543
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=342.70 Aligned_cols=200 Identities=27% Similarity=0.389 Sum_probs=172.0
Q ss_pred EEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------c
Q 006275 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------P 490 (652)
Q Consensus 425 i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------~ 490 (652)
++++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 78999999999999999999999999999999999999999999999997652 1
Q ss_pred ceecccccccCCCCCCHHHHHHHhhh--------------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHH
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
+|++|+ ..+++..|+.+|+..... ....+.+.++++.+++. ...++++.+|||||||||+|||
T Consensus 81 ~~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 81 GMIFQQ--FNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred EEEccc--CcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHHHH
Confidence 244443 345667899999975321 11234567889999994 6678999999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+++++
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 232 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF-DGPPAEL 232 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-ecCHHHh
Confidence 999999999999999999999999999999764 4699999999999999999999999999974 5777664
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=352.11 Aligned_cols=203 Identities=23% Similarity=0.367 Sum_probs=178.8
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------cceec
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFE 494 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~ 494 (652)
.++++|++++|+++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 489999999999889999999999999999999999999999999999999999999999998752 24555
Q ss_pred ccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
|. ..+++.+|+.||+.+..... ...++.++++.+|+. +..++++..|||||||||+|||||+.+|++||||
T Consensus 82 q~--~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 82 EH--NPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred CC--CCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 44 35677889999997643211 134578899999995 5679999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 569 EPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 569 EPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||+|||+.+++.+.+.|+++ +.|||++||+++++.++||||++|++|++. +.|+.+++..
T Consensus 159 EPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 221 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSA 221 (301)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHH
Confidence 999999999999999999876 469999999999999999999999999997 5688887654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=363.91 Aligned_cols=203 Identities=25% Similarity=0.429 Sum_probs=177.9
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cce
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (652)
++|+++|++++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .++
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 3699999999999999999999999999999999999999999999999999999999999998753 134
Q ss_pred ecccccccCCCCCCHHHHHHHhhh----------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p 562 (652)
+.|. ..+++.+|+.+|+..... ....+.+.++++.+++. +..++++.+||||||||++|||||+++|
T Consensus 82 v~q~--~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 82 VPQD--TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred EccC--CCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 4443 456678999999976421 11234578899999994 6789999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+||||||||+|||+.++..+.++|+++ +.|||++|||++++.++|||+++|++|++. ..|++++++
T Consensus 159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv-~~G~~~ev~ 227 (402)
T PRK09536 159 PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR-AAGPPADVL 227 (402)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 999999999999999999999998865 459999999999999999999999999997 468887654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=337.56 Aligned_cols=194 Identities=26% Similarity=0.401 Sum_probs=169.5
Q ss_pred EEEEEeeeeEeCCe----eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------c
Q 006275 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------P 490 (652)
Q Consensus 424 ~i~~~~v~~~y~~~----~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~ 490 (652)
+|+++|++++|+++ ++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 47899999999876 7999999999999999999999999999999999999999999999997653 1
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+|++|. ..+++..|+.+|+...... .....+.++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 81 ~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 81 GFVSDS--TGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred EEecCC--cccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 344443 3456678999999764321 1134577899999994 678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
|||||||++||+.+++.+.++|+++ +.|||+||||++++..+||++++|++|++..
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 9999999999999999999999865 4699999999999999999999999999863
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=359.94 Aligned_cols=204 Identities=26% Similarity=0.401 Sum_probs=179.0
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCe--eEEEECceecc--------ccee
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLLGEHNVL--------PNYF 493 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~--G~i~~~g~~~~--------~~~~ 493 (652)
.|+++||+++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++ |+|.++|.++. .+++
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 4899999999998889999999999999999999999999999999999999999 99999998752 2355
Q ss_pred cccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlL 567 (652)
+|+ ..+++.+||.+|+.+..... ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 85 fQ~--~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 85 FQN--YALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred ECC--cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 554 45788999999998764321 123577899999995 678999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc-----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 568 DEPTNHLDIPSKEMLEEAISEY-----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 568 DEPt~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||++||+.++..+.+.|++. +.|+|+||||++++..+||||++|++|++.. .|+++++.+.
T Consensus 162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~-~g~~~~~~~~ 229 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA-HGEPQALYDA 229 (362)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhC
Confidence 9999999999999999988643 4699999999999999999999999999974 5877776543
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=349.58 Aligned_cols=207 Identities=24% Similarity=0.386 Sum_probs=173.7
Q ss_pred ceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 97 ~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
+|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 5899999999964 359999999999999999999999999999999999999999999998743 259
Q ss_pred EEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
+|++|+|. .++..||++|+...... ...+.....+++.++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 124 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLEN---------------------------------------KGIPHEEMKERVNEA 124 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHh---------------------------------------CCCCHHHHHHHHHHH
Confidence 99999984 55678999998522100 001111233456678
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~-~g~tvIivsHd~~~ 318 (652)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ + .|+|||+||||+++
T Consensus 125 l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 125 LELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred HHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 8889996 57789999999999999999999999999999999999999999999988764 2 48999999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+ .+||+|+++++|++. ..|+.+++.
T Consensus 204 ~-~~~dri~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13650 204 V-ALSDRVLVMKNGQVE-STSTPRELF 228 (279)
T ss_pred H-HhCCEEEEEECCEEE-EECCHHHHH
Confidence 9 589999999999974 567766553
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=335.89 Aligned_cols=193 Identities=27% Similarity=0.470 Sum_probs=168.5
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceeccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~~ 496 (652)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|.
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 47899999999889999999999999999999999999999999999999999999999998752 2344443
Q ss_pred ccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
..+++..|+.+|+...... .....+.++++.+++. +..++++.+||||||||++|||||+.+|++||||||
T Consensus 81 --~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 81 --YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred --hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455678999999764221 1123467889999994 677999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
|+|||+.+++.+.+.|+++ +.|||+||||++++.++||++++|++|+++.
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 9999999999999999764 4699999999999999999999999999874
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=344.51 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=171.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~---------- 160 (652)
++|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|..
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 469999999999888899999999999999999999999999999999999985 79999987632
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..++|++|++.++. .|++||+...... . .........+
T Consensus 91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~------------------------~~~~~~~~~~ 130 (258)
T PRK14268 91 LRKNVGMVFQKPNPFP-MSIYDNVAYGPRI---------------H------------------------GANKKDLDGV 130 (258)
T ss_pred HhhhEEEEecCCccCc-ccHHHHHHHHHHH---------------c------------------------CCCHHHHHHH
Confidence 24999999987765 8999998532100 0 0000112234
Q ss_pred HHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.++++.+|+. ....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||+||
T Consensus 131 ~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivs 210 (258)
T PRK14268 131 VENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVT 210 (258)
T ss_pred HHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 55667777763 2346788999999999999999999999999999999999999999999988753 378999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||++++.++||+|++|++|++. +.|..+++
T Consensus 211 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 240 (258)
T PRK14268 211 HNMQQAARISDYTGFFLMGELI-EFGQTRQI 240 (258)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999984 66766554
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=350.09 Aligned_cols=207 Identities=22% Similarity=0.313 Sum_probs=171.3
Q ss_pred eEEEeEEEEeCC-----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------
Q 006275 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (652)
Q Consensus 98 i~v~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------ 160 (652)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 899999999974 369999999999999999999999999999999999999999999998742
Q ss_pred --ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 --MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 --~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..|+|++|++. ..+..|+++|+...... . .........
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~ 123 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQN---------------F------------------------GVSQEEAEA 123 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHH---------------c------------------------CCCHHHHHH
Confidence 24999999972 22456999998521100 0 000112233
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEec
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISH 314 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsH 314 (652)
++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .++|||+|||
T Consensus 124 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH 203 (280)
T PRK13649 124 LAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203 (280)
T ss_pred HHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 4567788888864467888999999999999999999999999999999999999999999888743 4889999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+++++..+||++++|++|++. +.|+.+++
T Consensus 204 ~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 232 (280)
T PRK13649 204 LMDDVANYADFVYVLEKGKLV-LSGKPKDI 232 (280)
T ss_pred cHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999974 55766554
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=375.21 Aligned_cols=249 Identities=22% Similarity=0.374 Sum_probs=186.8
Q ss_pred HHHHhhhhhHHhhhccCccccccccccccCCCCCCCCCCCceEEEeEEEEeCCe---eeeeeeeEEEECCCEEEEECCCC
Q 006275 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNG 133 (652)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ls~~y~~~---~vL~~vsl~i~~Ge~~~lvG~NG 133 (652)
..+.++..+.+++|+.-++.+..... . ..... .....|+++||+|+|+.+ ++|+|+||+|++||++|||||||
T Consensus 429 s~lmkgvGAs~rvFel~dr~P~i~~~-G--~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSG 504 (716)
T KOG0058|consen 429 SELMKGVGASERVFELMDRKPRIPLT-G--TLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSG 504 (716)
T ss_pred HHHHHhcchHHHHHHHhccCCCCCCC-C--ccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCC
Confidence 44555556667777665554322222 1 11111 245679999999999876 49999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCCcEEEECCCCc----------eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006275 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203 (652)
Q Consensus 134 sGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~ 203 (652)
+||||+.++|..+|+|++|+|.++|.++ +||+|.|+|.+ ++.||+|||..+..+. . .++++.+-
T Consensus 505 sGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL-Fs~sI~eNI~YG~~~~-t----~e~i~~AA 578 (716)
T KOG0058|consen 505 SGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL-FSGSIRENIAYGLDNA-T----DEEIEAAA 578 (716)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee-ecccHHHHHhcCCCCC-C----HHHHHHHH
Confidence 9999999999999999999999999753 69999999977 8899999998654421 0 01111111
Q ss_pred hhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEE
Q 006275 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (652)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLL 283 (652)
+.+ ...+++..+.+ |..+..+ ....+||||||||+||||||++||.||||
T Consensus 579 k~A-Nah~FI~~~p~----------------------------gY~T~VG-EkG~qLSGGQKQRIAIARALlr~P~VLIL 628 (716)
T KOG0058|consen 579 KMA-NAHEFITNFPD----------------------------GYNTVVG-EKGSQLSGGQKQRIAIARALLRNPRVLIL 628 (716)
T ss_pred HHh-ChHHHHHhCcc----------------------------ccccccC-CccccccchHHHHHHHHHHHhcCCCEEEE
Confidence 100 11122221111 2222233 33689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 284 DEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 284 DEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
||.||+||.++...+.+.|.+ .+.|||+|.|++..+. -||+|+++++|++ ...|++++++..
T Consensus 629 DEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~-~Ad~Ivvi~~G~V-~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 629 DEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVR-HADQIVVIDKGRV-VEMGTHDELLSK 692 (716)
T ss_pred echhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhh-hccEEEEEcCCeE-EecccHHHHhhC
Confidence 999999999999999888853 4799999999999995 5999999999998 578888887654
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=345.14 Aligned_cols=211 Identities=26% Similarity=0.342 Sum_probs=175.3
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v 166 (652)
+|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 4899999999998889999999999999999999999999999999999999999999998743 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++..|+.||+........ ..+. ........++.++++.+
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~----------~~~~-------------------------~~~~~~~~~~~~~l~~~ 126 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWL----------SLWG-------------------------RLSAEDNARVNQAMEQT 126 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhh----------hhcc-------------------------CCCHHHHHHHHHHHHHc
Confidence 999877777899999753210000 0000 00011234456778888
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (652)
|+. +..++++.+|||||+|||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.++|||++||+++++.++|
T Consensus 127 ~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~ 205 (255)
T PRK11231 127 RIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYC 205 (255)
T ss_pred CCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhc
Confidence 885 56788999999999999999999999999999999999999999999988874 35889999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|+++++++|++. ..|+++++
T Consensus 206 d~i~~l~~G~i~-~~~~~~~~ 225 (255)
T PRK11231 206 DHLVVLANGHVM-AQGTPEEV 225 (255)
T ss_pred CEEEEEECCeEE-EEcCHHHh
Confidence 999999999974 56765554
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=340.29 Aligned_cols=202 Identities=28% Similarity=0.420 Sum_probs=173.6
Q ss_pred EEEEEeeeeEeCCe----eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc---------
Q 006275 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------- 490 (652)
Q Consensus 424 ~i~~~~v~~~y~~~----~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------- 490 (652)
+|+++|++++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 47899999999876 89999999999999999999999999999999999999999999999987521
Q ss_pred ----ceecccccccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 491 ----NYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 491 ----~~~~~~~~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
+|++|+ ..+++..|+.+|+...... . ....+.++++.+++. +..++++.+||||||||++|||||+.
T Consensus 81 ~~~i~~~~q~--~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 81 RRRIGMIFQH--FNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HhheEEEccC--cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 233333 3456678999999764321 1 133577899999994 66789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|++.. .|+.++..
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 229 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE-EGTVEEVF 229 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 99999999999999999999999999764 4599999999999999999999999999974 56666543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=338.70 Aligned_cols=190 Identities=32% Similarity=0.495 Sum_probs=164.2
Q ss_pred EEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------
Q 006275 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (652)
Q Consensus 425 i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------- 489 (652)
|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 478999999986 78999999999999999999999999999999999999999999999997652
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
.+|++|. ..+++..|+.+|+....... ....+.++++.+|+. ...++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQS--FNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeec--cccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHHHHHHcc
Confidence 1233333 34566789999998643211 124577899999995 56789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEE
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i 618 (652)
+|++|||||||++||+.++..+.++|+++ +.|||+||||++++. +||++++|++|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999999864 459999999999997 8999999999874
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=336.80 Aligned_cols=196 Identities=24% Similarity=0.366 Sum_probs=166.3
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q~ 169 (652)
|+++|++++|+++. .|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 47899999998754 39999999999999999999999999999999999999999998743 259999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+++..|++||+......... . ....+.++.++++.+|+.
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~~--------------------------------------~-~~~~~~~~~~~l~~~~l~ 119 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGLK--------------------------------------L-TAEDRQAIEVALARVGLA 119 (211)
T ss_pred cccCCCCcHHHHHhcccccccC--------------------------------------c-cHHHHHHHHHHHHHcCCH
Confidence 9887788999998532110000 0 001133566778888986
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (652)
+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .++|||++||+++++..+||+
T Consensus 120 -~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 120 -GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred -HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE
Confidence 567888999999999999999999999999999999999999999999888753 489999999999999999999
Q ss_pred EEEEcCCeEE
Q 006275 326 IVETEMGVSR 335 (652)
Q Consensus 326 ii~l~~G~~~ 335 (652)
|+++++|++.
T Consensus 199 i~~l~~G~i~ 208 (211)
T cd03298 199 VVFLDNGRIA 208 (211)
T ss_pred EEEEECCEEe
Confidence 9999999874
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=340.92 Aligned_cols=203 Identities=26% Similarity=0.384 Sum_probs=175.6
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------cc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~ 491 (652)
+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 478999999998888999999999999999999999999999999999999999999999997753 12
Q ss_pred eecccccccCCCCCCHHHHHHHhhh---h----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
|++|+ ..+++..|+.+|+.+... . .....+.++++.+|+. ...++++.+||||||||++|||||+.+|++
T Consensus 81 ~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 81 MVFQQ--FYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred EEecc--cccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 44443 345667899999976421 1 1123467899999995 567999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|++. +.|+++++.+
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 225 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA-EDGDPQVLIK 225 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eeCCHHHHhc
Confidence 9999999999999999999999765 469999999999999999999999999997 4588777654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=334.81 Aligned_cols=193 Identities=28% Similarity=0.386 Sum_probs=169.6
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceeccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~~ 496 (652)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 47899999998889999999999999999999999999999999999999999999999997652 2344443
Q ss_pred ccccCCCCCCHHHHHHHhhhh--ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCC
Q 006275 497 QAEALDLDKTVLETVAEAAED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~L 574 (652)
..+++..|+.+|+...... ....++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 81 --~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 81 --PGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred --CccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 3466788999999765321 2345678889999994 5678999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 575 DIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 575 D~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
|+.+++.+.++|.++ +.|||+||||++++..+||++++|++|++..
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999764 4699999999999999999999999999863
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=350.79 Aligned_cols=205 Identities=25% Similarity=0.359 Sum_probs=175.3
Q ss_pred EEEEEeeeeEeCC-----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
+|+++|++++|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 4899999999973 25999999999999999999999999999999999999999999999998752
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.+|+.|+....+ +..|+.+|+.+..... ....+.++++.+++.....++++.+||||||||++|||||
T Consensus 81 ~~~~~ig~v~q~~~~~l-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQL-FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhc-ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 235566533233 3469999998754321 1234678899999954567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|++. +.|+++++..
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 233 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII-SCGTPSDVFQ 233 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHc
Confidence 9999999999999999999999999998764 469999999999999999999999999997 5688887654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=347.62 Aligned_cols=209 Identities=22% Similarity=0.378 Sum_probs=175.3
Q ss_pred CceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEE
Q 006275 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~ 164 (652)
.+++++|++++|+ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.. ..++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 3589999999996 4569999999999999999999999999999999999999999999998742 2499
Q ss_pred EEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 165 FLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 165 ~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
|++|++. .++..||.+|+...... . ..+.....+++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~--------------~-------------------------~~~~~~~~~~~~~~l 122 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPIN--------------L-------------------------GLDEETVAHRVSSAL 122 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHH--------------c-------------------------CCCHHHHHHHHHHHH
Confidence 9999974 33567999998521100 0 011112234566788
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l 319 (652)
+.+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ .|.|||++||+++++
T Consensus 123 ~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~ 201 (277)
T PRK13652 123 HMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV 201 (277)
T ss_pred HHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 888986 678899999999999999999999999999999999999999999999887742 489999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.++||||++|++|++ .+.|+.+++.
T Consensus 202 ~~~~drv~~l~~G~i-~~~g~~~~~~ 226 (277)
T PRK13652 202 PEMADYIYVMDKGRI-VAYGTVEEIF 226 (277)
T ss_pred HHhCCEEEEEECCeE-EEECCHHHHh
Confidence 999999999999998 4678877664
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=351.13 Aligned_cols=203 Identities=26% Similarity=0.387 Sum_probs=174.0
Q ss_pred EEEEeeeeEeCC-----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 425 i~~~~v~~~y~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999974 46999999999999999999999999999999999999999999999998652
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHc
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~ 559 (652)
.+|++|+....+ +..|+.+|+.+..... ....+.++++.+++.....++++.+|||||||||+|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 83 LRKKVGIVFQFPEHQL-FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHhhEEEEeeCchhhh-hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 245566532233 3579999998653211 12356788999999646678999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|++. ..|+++++.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 234 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF-LQGTPREIF 234 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999999998764 469999999999999999999999999997 467777654
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=343.13 Aligned_cols=211 Identities=21% Similarity=0.253 Sum_probs=172.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~---------- 160 (652)
.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 368999999999888899999999999999999999999999999999999987 49999998742
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..++|++|++.+++..|+.||+...... .... ........+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~---------------~~~~----------------------~~~~~~~~~ 125 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKL---------------NGLV----------------------KSKKELDER 125 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHh---------------cCcc----------------------CCHHHHHHH
Confidence 2599999999887788999998532110 0000 000112234
Q ss_pred HHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++|
T Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~s 205 (253)
T PRK14267 126 VEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT 205 (253)
T ss_pred HHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 455666667632 246778999999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|+++++..+||+|++|++|++. ..|+.+++
T Consensus 206 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 235 (253)
T PRK14267 206 HSPAQAARVSDYVAFLYLGKLI-EVGPTRKV 235 (253)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999984 66776554
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=336.73 Aligned_cols=191 Identities=30% Similarity=0.420 Sum_probs=166.0
Q ss_pred EEEEEeeeeEe-CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------
Q 006275 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y-~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (652)
+|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 47899999999 4678999999999999999999999999999999999999999999999997652
Q ss_pred cceecccccccCCCCCCHHHHHHHhhh------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
.+|++|. ..+++..|+.+|+..... ......+.++++.+++. +..++++.+|||||||||+|||||+.+|+
T Consensus 81 i~~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 81 IGVVFQD--FRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred eEEEecC--hhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 1234443 345667899999976421 11234578899999995 56789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCE
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSN 617 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~ 617 (652)
+|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999865 4699999999999999999999999874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=359.85 Aligned_cols=206 Identities=27% Similarity=0.445 Sum_probs=179.9
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cce
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNY 492 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~ 492 (652)
..++|+++|+++.|++..+|+++||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|.++. .+|
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 356799999999999888999999999999999999999999999999999999999999999998762 245
Q ss_pred ecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
++|+ ..+++.+|+.||+.+..... ...++.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 96 vfQ~--~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 96 MFQS--YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EeCC--CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6654 46788999999998764321 124577899999995 67899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 567 LDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||||++||..++..+.+.|+ +.+.|+|+||||.+++..+|||+++|++|++.. .|+++++..
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~~~~~ 239 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ-IGEPEEIYE 239 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE-EcCHHHHHh
Confidence 999999999999998886654 346799999999999999999999999999974 577776654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=350.86 Aligned_cols=209 Identities=21% Similarity=0.281 Sum_probs=171.4
Q ss_pred CceEEEeEEEEeCCe-----eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------- 160 (652)
..|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 359999999999764 49999999999999999999999999999999999999999999987632
Q ss_pred -----ceEEEEeccCcc-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhc
Q 006275 161 -----MKIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (652)
Q Consensus 161 -----~~i~~v~Q~~~~-~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (652)
..|+|++|++.. .+..|++||+...... . ......
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~---------------~------------------------~~~~~~ 125 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN---------------L------------------------GENKQE 125 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH---------------c------------------------CCCHHH
Confidence 258999999742 2346999998521100 0 000111
Q ss_pred HHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 006275 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (652)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvI 310 (652)
...++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .++|||
T Consensus 126 ~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 205 (289)
T PRK13645 126 AYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRII 205 (289)
T ss_pred HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2234566788888854567889999999999999999999999999999999999999999999887642 488999
Q ss_pred EEecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 311 ivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+|||+++++.++||+|++|++|++. +.|+.+++
T Consensus 206 iisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 238 (289)
T PRK13645 206 MVTHNMDQVLRIADEVIVMHEGKVI-SIGSPFEI 238 (289)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999974 56766554
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=354.41 Aligned_cols=210 Identities=24% Similarity=0.345 Sum_probs=174.3
Q ss_pred ceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC----CCCcEEEECCCCc-------
Q 006275 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSNM------- 161 (652)
Q Consensus 97 ~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~----p~~G~i~~~~~~~------- 161 (652)
.|+++|+++.|+. .++|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999976 469999999999999999999999999999999999997 4899999987531
Q ss_pred -------eEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCCh
Q 006275 162 -------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (652)
Q Consensus 162 -------~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (652)
.|+|++|++. +.+..|+.+++....... .....
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--------------------------------------~~~~~ 124 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--------------------------------------QGGNK 124 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--------------------------------------cCCCH
Confidence 4999999983 556788888764221100 00111
Q ss_pred hcHHHHHHHHhhhcCCCc--ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCC
Q 006275 233 DTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (652)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g 306 (652)
.+..+++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|
T Consensus 125 ~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g 204 (326)
T PRK11022 125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204 (326)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 223456778899999963 35688899999999999999999999999999999999999999999988764 358
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 307 ~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.|+|+||||++.+..+||+|++|.+|+++ ..|+..++.
T Consensus 205 ~til~iTHdl~~~~~~adri~vm~~G~iv-e~g~~~~~~ 242 (326)
T PRK11022 205 MALVLITHDLALVAEAAHKIIVMYAGQVV-ETGKAHDIF 242 (326)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999999984 667766554
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=347.68 Aligned_cols=212 Identities=26% Similarity=0.364 Sum_probs=175.2
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
.+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 46999999999988889999999999999999999999999999999999999999999998743 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++..|+.+|+........ ..+. ........++.++++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~----------~~~~-------------------------~~~~~~~~~~~~~l~~ 134 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWH----------GALG-------------------------RFGAADREKVEEAISL 134 (265)
T ss_pred eccCCCCCCCccHHHHHHhCccccc----------cccc-------------------------CCCHHHHHHHHHHHHH
Confidence 9999877778899999853210000 0000 0001123445677888
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~ 321 (652)
+|+. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++|++ .|.|||++||+++++.+
T Consensus 135 ~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~ 213 (265)
T PRK10575 135 VGLK-PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAAR 213 (265)
T ss_pred cCCH-HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 8885 567888999999999999999999999999999999999999999988887642 48999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+||+|++|++|++. ..|+.+++
T Consensus 214 ~~d~i~~l~~G~i~-~~~~~~~~ 235 (265)
T PRK10575 214 YCDYLVALRGGEMI-AQGTPAEL 235 (265)
T ss_pred hCCEEEEEECCeEE-EecCHHHh
Confidence 99999999999984 56665543
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=343.87 Aligned_cols=194 Identities=27% Similarity=0.402 Sum_probs=169.8
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----cceeccccc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQNQA 498 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----~~~~~~~~~ 498 (652)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~-- 78 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN-- 78 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC--
Confidence 488999999998888999999999999999999999999999999999999999999999998753 2455554
Q ss_pred ccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 499 EALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 499 ~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
..+++..|+.+|+...... .....+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~ 157 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 3456678999999764211 1124578899999995 56789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEe--CCEEEe
Q 006275 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK--GSNLQD 620 (652)
Q Consensus 573 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~--~g~i~~ 620 (652)
+||+.++..+.+.|+++ +.|||+||||++++..+||++++|+ +|++.+
T Consensus 158 ~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 158 ALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 99999999999999865 4699999999999999999999998 599874
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=357.47 Aligned_cols=203 Identities=29% Similarity=0.411 Sum_probs=175.1
Q ss_pred EEEEEeeeeEeC----CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 424 VVTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~----~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
||+++||+++|+ ++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 489999999997 468999999999999999999999999999999999999999999999998753
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
.+|++|+ ..+++..|+.+|+.+.... . ....+.++++.+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~--~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQH--FNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCC--CccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 1244443 3466778999999875321 1 123567889999995 67899999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+|||+++|++|++.. .|+.++...
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~-~g~~~~~~~ 230 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE-QGTVSEVFS 230 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 99999999999999999999999999865 4699999999999999999999999999974 577666543
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=338.05 Aligned_cols=192 Identities=29% Similarity=0.456 Sum_probs=164.8
Q ss_pred EEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----cceeccccccc
Q 006275 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQNQAEA 500 (652)
Q Consensus 426 ~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----~~~~~~~~~~~ 500 (652)
+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+....
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 3689999998888999999999999999999999999999999999999999999999997642 34666653221
Q ss_pred CCCCCCHHHHHHHhhhh----------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 501 LDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 501 ~~~~~tv~e~~~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
..+..|+.+|+...... ...+.+.++++.+++. +..++++.+||||||||++|||||+.+|++||||||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 12447999999764321 1124577899999994 678899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEE
Q 006275 571 TNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i 618 (652)
|++||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|.+
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 9999999999999999865 35999999999999999999999998754
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=349.06 Aligned_cols=205 Identities=26% Similarity=0.404 Sum_probs=174.9
Q ss_pred EEEEEeeeeEeCC-----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
.|+++||++.|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999974 46999999999999999999999999999999999999999999999997752
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCC-hhhhccCcCCCCHHHHHHHHHHHHHc
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFK-ADMLDRKVSLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~-~~~~~~~~~~LSgGqrqrv~LAral~ 559 (652)
.+|++|+... ..+..|+.+|+.+.... . ....+.++++.+|+. .+..++++.+||||||||++|||||+
T Consensus 82 ~~~ig~v~q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 82 RKKVGLVFQYPEY-QLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred hhceEEEecCchh-ccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 1355665322 23467999999864321 1 123577899999995 24679999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|++. ..|+.+++++
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 234 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE-LQGTPREVFK 234 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999764 469999999999999999999999999997 4687777654
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=354.46 Aligned_cols=208 Identities=23% Similarity=0.419 Sum_probs=178.2
Q ss_pred CcEEEEEeeeeEeCC-------------eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 422 RSVVTIKNLEFGYED-------------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~-------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
+++|+++||++.|+. ..+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 467999999999962 4689999999999999999999999999999999999999999999999875
Q ss_pred c-------------cceecccccccCCCCCCHHHHHHHhhhh----cc----HHHHHHHHhhCCCChhhhccCcCCCCHH
Q 006275 489 L-------------PNYFEQNQAEALDLDKTVLETVAEAAED----WR----IDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (652)
Q Consensus 489 ~-------------~~~~~~~~~~~~~~~~tv~e~~~~~~~~----~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgG 547 (652)
. .+|+.|+....+++.+|+.+|+.+.... .. ...+.++++.+++.....++++.+||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 2 2355665433577789999998764211 11 2346788999999656789999999999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecC
Q 006275 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAG 623 (652)
Q Consensus 548 qrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g 623 (652)
|||||+|||||+.+|+||||||||++||+.++..+.++|++. +.|+|+||||++++.++||||++|++|++++ .|
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive-~g 244 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE-LG 244 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-Ec
Confidence 999999999999999999999999999999999999988754 5699999999999999999999999999985 47
Q ss_pred ChhhHhh
Q 006275 624 DYNVCFT 630 (652)
Q Consensus 624 ~~~~~~~ 630 (652)
+.+++++
T Consensus 245 ~~~~i~~ 251 (331)
T PRK15079 245 TYDEVYH 251 (331)
T ss_pred CHHHHHc
Confidence 7666543
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=344.70 Aligned_cols=210 Identities=28% Similarity=0.386 Sum_probs=175.5
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEEe
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLS 167 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v~ 167 (652)
|+++|+++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 789999999998899999999999999999999999999999999999999999999998742 2499999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|++..++..||.||+........ ... ........+++.++++.+|
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~----------~~~-------------------------~~~~~~~~~~~~~~l~~~~ 126 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHR----------SLW-------------------------AGDSPHDAAVVDRALARTE 126 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhh----------hhc-------------------------cCCCHHHHHHHHHHHHHcC
Confidence 99877778899999853210000 000 0001112335667888888
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcC
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d 324 (652)
+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .+.|||++||+++++..+||
T Consensus 127 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 127 LS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD 205 (256)
T ss_pred cH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 85 677899999999999999999999999999999999999999999999888753 48899999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~ 344 (652)
+|++|++|++. ..|+.+++
T Consensus 206 ~i~~l~~G~i~-~~g~~~~~ 224 (256)
T TIGR03873 206 HVVVLDGGRVV-AAGPPREV 224 (256)
T ss_pred EEEEEeCCCEE-EecCHHHh
Confidence 99999999974 66765554
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=343.07 Aligned_cols=209 Identities=22% Similarity=0.296 Sum_probs=170.5
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~---------- 160 (652)
.+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 469999999999888899999999999999999999999999999999999997 48999997642
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..|+|++|++.++ ..||+||+....... . ..........
T Consensus 86 ~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~~ 126 (254)
T PRK14273 86 LRRKIGMVFQTPNPF-LMSIYDNISYGPKIH---------------G-----------------------TKDKKKLDEI 126 (254)
T ss_pred HhhceEEEeeccccc-cCcHHHHHHHHHHhc---------------C-----------------------CCCHHHHHHH
Confidence 2499999998775 589999985321100 0 0000112233
Q ss_pred HHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.++++.+|+. .+..++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++|
T Consensus 127 ~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~s 206 (254)
T PRK14273 127 VEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVT 206 (254)
T ss_pred HHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 44556666652 1346778999999999999999999999999999999999999999999888753 368999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|+++++..+||+|++|++|++. ..|+.+++
T Consensus 207 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 236 (254)
T PRK14273 207 HNMQQAGRISDRTAFFLNGCIE-EESSTDEL 236 (254)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999984 56776554
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=352.58 Aligned_cols=209 Identities=24% Similarity=0.317 Sum_probs=175.7
Q ss_pred CCCCcEEEEEeeeeEeCC-----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----
Q 006275 419 RSGRSVVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---- 489 (652)
Q Consensus 419 ~~~~~~i~~~~v~~~y~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---- 489 (652)
.++.++|+++|+++.|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 16 ~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 345678999999999974 36999999999999999999999999999999999999999999999986542
Q ss_pred ----------------------cceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCc
Q 006275 490 ----------------------PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKV 541 (652)
Q Consensus 490 ----------------------~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~ 541 (652)
.+++.|+....+ +..|+.+|+.+.... .....+.++++.+++.....++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQL-FKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhcc-ccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 124444432223 346999999765321 112346788999999645689999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEE
Q 006275 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 542 ~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i 618 (652)
.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||||++|++|++
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999754 46999999999999999999999999999
Q ss_pred EeecCChhhHh
Q 006275 619 QDYAGDYNVCF 629 (652)
Q Consensus 619 ~~~~g~~~~~~ 629 (652)
. ..|+++++.
T Consensus 255 ~-~~g~~~~~~ 264 (320)
T PRK13631 255 L-KTGTPYEIF 264 (320)
T ss_pred E-EeCCHHHHh
Confidence 7 458777654
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=346.18 Aligned_cols=212 Identities=24% Similarity=0.312 Sum_probs=176.4
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
..|+++|++++|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 45999999999998889999999999999999999999999999999999999999999998743 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++..|+++|+.......... +. ........++.++++.
T Consensus 86 v~q~~~~~~~~tv~~~~~~~~~~~~~~----------~~-------------------------~~~~~~~~~~~~~l~~ 130 (265)
T PRK10253 86 LAQNATTPGDITVQELVARGRYPHQPL----------FT-------------------------RWRKEDEEAVTKAMQA 130 (265)
T ss_pred eeccCcCCCCCcHHHHHHhCccccccc----------cc-------------------------CCCHHHHHHHHHHHHH
Confidence 999998877889999985321000000 00 0000112345677888
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~ 321 (652)
+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .+.|||++||+++++.+
T Consensus 131 ~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~ 209 (265)
T PRK10253 131 TGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACR 209 (265)
T ss_pred cCCH-HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 8886 567899999999999999999999999999999999999999999999887743 48899999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+||+|+++++|++. ..|..+++
T Consensus 210 ~~d~i~~l~~G~i~-~~g~~~~~ 231 (265)
T PRK10253 210 YASHLIALREGKIV-AQGAPKEI 231 (265)
T ss_pred hCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999974 66765554
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=346.73 Aligned_cols=207 Identities=27% Similarity=0.399 Sum_probs=172.6
Q ss_pred ceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEE
Q 006275 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~ 164 (652)
+|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 378999999996 4679999999999999999999999999999999999999999999998742 2499
Q ss_pred EEeccCcc-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 165 ~v~Q~~~~-~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
|++|++.. ++..|+++|+...... . ..+.....+++.+++
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~--------------~-------------------------~~~~~~~~~~~~~~l 121 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPEN--------------L-------------------------CLPPIEIRKRVDRAL 121 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHH--------------c-------------------------CCCHHHHHHHHHHHH
Confidence 99999853 4567999998521100 0 011112334566778
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (652)
+.+|+. ...++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|.|||++|||++++
T Consensus 122 ~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~- 199 (274)
T PRK13644 122 AEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL- 199 (274)
T ss_pred HHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-
Confidence 888986 56788999999999999999999999999999999999999999999988774 4589999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
..||+|+++++|++. +.|+.+++.
T Consensus 200 ~~~d~v~~l~~G~i~-~~g~~~~~~ 223 (274)
T PRK13644 200 HDADRIIVMDRGKIV-LEGEPENVL 223 (274)
T ss_pred hhCCEEEEEECCEEE-EECCHHHHh
Confidence 569999999999984 667766543
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=342.41 Aligned_cols=204 Identities=27% Similarity=0.401 Sum_probs=175.1
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-----------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------- 490 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------- 490 (652)
+.+|+++|+++.|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred CceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 347999999999998899999999999999999999999999999999999999999999999986521
Q ss_pred ceecccccccCCCCCCHHHHHHHhhh------------------hc---cHHHHHHHHhhCCCChhhhccCcCCCCHHHH
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAE------------------DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~------------------~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqr 549 (652)
.|++| ...+++..|+.+|+..... .. ....+.++++.+|+. +..++++.+||||||
T Consensus 83 ~~~~q--~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 83 VRTFQ--HVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQ 159 (255)
T ss_pred EEecc--CcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhhCCHHHH
Confidence 12343 3456677899999986421 00 113467788999984 678999999999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCCh
Q 006275 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625 (652)
Q Consensus 550 qrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~ 625 (652)
|||+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||++||+++++.++||++++|++|++. +.|+.
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~ 238 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL-ANGTP 238 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-ecCCH
Confidence 9999999999999999999999999999999999998754 469999999999999999999999999997 45777
Q ss_pred hhHh
Q 006275 626 NVCF 629 (652)
Q Consensus 626 ~~~~ 629 (652)
+++.
T Consensus 239 ~~~~ 242 (255)
T PRK11300 239 EEIR 242 (255)
T ss_pred HHHh
Confidence 6654
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=345.81 Aligned_cols=211 Identities=24% Similarity=0.420 Sum_probs=177.4
Q ss_pred EEEEEeeeeEeC---------CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----
Q 006275 424 VVTIKNLEFGYE---------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~---------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----- 489 (652)
+|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 589999999995 367999999999999999999999999999999999999999999999997652
Q ss_pred --------cceecccccccCCCCCCHHHHHHHhhh---h----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHH
Q 006275 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 --------~~~~~~~~~~~~~~~~tv~e~~~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~L 554 (652)
.+|++|.....+.+..|+.+|+..... . .....+.++++.+++.....++++.+|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 234444432234567899999864321 1 1124577899999995456789999999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++. ..|+.++...
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHHcC
Confidence 99999999999999999999999999999998764 569999999999999999999999999997 4588887765
Q ss_pred hcCCc
Q 006275 631 SFSPF 635 (652)
Q Consensus 631 ~~~~~ 635 (652)
..+++
T Consensus 241 ~~~~~ 245 (265)
T TIGR02769 241 FKHPA 245 (265)
T ss_pred CCCHH
Confidence 44444
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=392.67 Aligned_cols=315 Identities=19% Similarity=0.238 Sum_probs=189.1
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHH---------HHHcCCCCCCcEEEECCCCceEEEEe
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR---------IIAGQEEPDSGNVIKAKSNMKIAFLS 167 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~---------~L~G~~~p~~G~i~~~~~~~~i~~v~ 167 (652)
.|++++++. ..|+++||+|++|++++|+|+||||||||++ .|.|...+..+ +.. +.-.++-++.
T Consensus 600 ~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~-i~g-~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLS-IQW-GAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCccccc-ccc-cccceeEEec
Confidence 588888863 3799999999999999999999999999999 56665433211 110 1112456666
Q ss_pred ccCccCC-C---CC---HHHHHHHhhHHHHHHH-HHHHHHHHHHh-------h-----------------h---c---ch
Q 006275 168 QEFEVSM-S---RT---VREEFMSAFKEEMEIA-GKLERVQKALE-------S-----------------A---V---DD 209 (652)
Q Consensus 168 Q~~~~~~-~---~T---v~e~i~~~~~~~~~~~-~~~~~~~~~~~-------~-----------------~---~---~~ 209 (652)
|.|.--. . .| +++.+...|....... .........+. . | . ..
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 6652211 1 11 3444443322100000 00000000000 0 0 0 00
Q ss_pred hHHHHhhHHHH---HHHH---HHH-H-hCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHc---cCC
Q 006275 210 MDLMGRLLDEF---DLLQ---RKA-Q-AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---QDP 278 (652)
Q Consensus 210 ~~~~~~~~~~~---~~~~---~~~-~-~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~---~~p 278 (652)
.+.++...+.. +.+. ..+ . ..+...+.+++ ++|+.+|+.....++++.+|||||+|||+|||||+ .+|
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P 831 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKP 831 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCC
Confidence 01110000000 0000 000 0 01123445566 57888999632368899999999999999999997 699
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEc------CCeEEEecCChHHHHHHHH
Q 006275 279 DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKA 349 (652)
Q Consensus 279 ~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l~------~G~~~~~~g~~~~~~~~~~ 349 (652)
++|||||||+|||+.+++.+.++|+ +.|.|||+|||+++++ .+||+|++|. .|++ ...|+.+++.....
T Consensus 832 ~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~i-v~~Gtpeel~~~~s 909 (1809)
T PRK00635 832 TLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYL-LASCSPEELIHLHT 909 (1809)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEE-EEeCCHHHHHhccC
Confidence 9999999999999999999988764 4689999999999999 8999999996 4555 57788766532100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEe
Q 006275 350 AWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKN 429 (652)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~ 429 (652)
.. . ..+...+... ... . ... |+.. .. ++..+
T Consensus 910 ~t-----~---------~~l~~~l~~~-------------------------~~~---~--~~~-~~~~---~~-l~~~~ 940 (1809)
T PRK00635 910 PT-----A---------KALRPYLSSP-------------------------QEL---P--YLP-DPSP---KP-PVPAD 940 (1809)
T ss_pred ch-----H---------HHHHHHhhcc-------------------------ccc---c--ccc-cccc---cc-cccce
Confidence 00 0 0000000000 000 0 000 1100 11 34556
Q ss_pred eeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHH
Q 006275 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (652)
Q Consensus 430 v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l 470 (652)
+.+.+.....|+|+||+|++|++++|+|+||||||||+..+
T Consensus 941 i~i~~~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~ 981 (1809)
T PRK00635 941 ITIKNAYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI 981 (1809)
T ss_pred EEEeccccccccceeEEecCCcEEEEECCCCCChhHHHHHH
Confidence 66666545679999999999999999999999999977665
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=341.47 Aligned_cols=210 Identities=25% Similarity=0.406 Sum_probs=172.6
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------------- 160 (652)
+|+++|++++|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 5999999999988889999999999999999999999999999999999999999999998643
Q ss_pred ---ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcH
Q 006275 161 ---MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (652)
Q Consensus 161 ---~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (652)
..++|++|++. +.+..|+.+|+...+.. ... ......
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~--------------~~~------------------------~~~~~~ 124 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA--------------IGA------------------------RHYGNI 124 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHH--------------hcc------------------------cchHHH
Confidence 14899999974 33456888887421100 000 000011
Q ss_pred HHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEE
Q 006275 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVI 311 (652)
Q Consensus 236 ~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIi 311 (652)
...+.++++.+|+.....++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|+ +.+.|||+
T Consensus 125 ~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 204 (253)
T TIGR02323 125 RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVII 204 (253)
T ss_pred HHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 24556788888986446788899999999999999999999999999999999999999999988774 24899999
Q ss_pred EecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 312 vsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|||+++++..+||+++++++|++. ..|..+++.
T Consensus 205 vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~~~ 237 (253)
T TIGR02323 205 VTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQVL 237 (253)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999984 566655543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=333.56 Aligned_cols=193 Identities=25% Similarity=0.436 Sum_probs=168.8
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------cceeccccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------PNYFEQNQA 498 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------~~~~~~~~~ 498 (652)
++++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~-- 78 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE-- 78 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccC--
Confidence 47899999999889999999999999999999999999999999999999999999999997652 2355544
Q ss_pred ccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 499 EALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 499 ~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
..+++..|+.+|+...... ...+.+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~ 157 (210)
T cd03269 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157 (210)
T ss_pred CcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 3456678999998764321 1134577889999995 56789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 573 HLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 573 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
+||+.+++.+.+.|+++ +.|||++|||++++..+||++++|++|++..
T Consensus 158 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 158 GLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99999999999999865 4599999999999999999999999999864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=345.23 Aligned_cols=216 Identities=21% Similarity=0.374 Sum_probs=177.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCCC------------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN------------ 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~---~G~i~~~~~~------------ 160 (652)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|..
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 3699999999999889999999999999999999999999999999999999986 4999988742
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..++|++|++.+++..|+.+|+............ ... .........
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~------~~~-------------------------~~~~~~~~~ 131 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWR------TCF-------------------------SWFTREQKQ 131 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchh------hhc-------------------------ccccHHHHH
Confidence 1489999999887888999998532100000000 000 000012234
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (652)
++.++++.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||++|
T Consensus 132 ~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~t 210 (262)
T PRK09984 132 RALQALTRVGMV-HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTL 210 (262)
T ss_pred HHHHHHHHcCCH-HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 567788899986 567889999999999999999999999999999999999999999999888753 479999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||++++..+||+|+++++|++ .+.|+++++
T Consensus 211 H~~~~~~~~~d~i~~l~~g~i-~~~g~~~~~ 240 (262)
T PRK09984 211 HQVDYALRYCERIVALRQGHV-FYDGSSQQF 240 (262)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEeCCHHHh
Confidence 999999999999999999998 577887664
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=348.27 Aligned_cols=205 Identities=23% Similarity=0.381 Sum_probs=173.4
Q ss_pred EEEEEeeeeEeCC-----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
+|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999973 46999999999999999999999999999999999999999999999998652
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.+|++|+....+ +..|+.+|+.+.... . ....+.++++.+++.....++++.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQL-FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhh-ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 134444422123 357999999764321 1 1234678899999954578999999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++. ..|+.++..+
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 234 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI-KHASPKEIFS 234 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999999999999865 359999999999999999999999999987 4577776543
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=342.25 Aligned_cols=210 Identities=21% Similarity=0.320 Sum_probs=172.7
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~----------- 160 (652)
.|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 58999999999988899999999999999999999999999999999999974 79999998742
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..++|++|++.+++..|+++|+...+... . ........+.+
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~---------------~-----------------------~~~~~~~~~~~ 125 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLN---------------G-----------------------VRNKKDLDELV 125 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhc---------------C-----------------------CCCHHHHHHHH
Confidence 24999999988877889999985321100 0 00011123345
Q ss_pred HHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006275 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (652)
Q Consensus 240 ~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (652)
.++++.+|+. ....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||+|||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH 205 (258)
T PRK14241 126 EKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH 205 (258)
T ss_pred HHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 5667777763 1356788999999999999999999999999999999999999999999888753 3689999999
Q ss_pred CHHHHHhhcCeEEEEc------CCeEEEecCChHHHH
Q 006275 315 DRAFLDQLCTKIVETE------MGVSRTYEGNYSQYV 345 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~------~G~~~~~~g~~~~~~ 345 (652)
+++++.++||+|++++ +|++ .+.|+.+++.
T Consensus 206 ~~~~~~~~~d~i~~l~~~~~~~~g~i-~~~~~~~~~~ 241 (258)
T PRK14241 206 NMQQAARVSDQTAFFNLEATGKPGRL-VEIDDTEKIF 241 (258)
T ss_pred CHHHHHHhCCEEEEEecccCCCCceE-EecCCHHHHH
Confidence 9999999999999996 6877 4667766553
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=343.00 Aligned_cols=210 Identities=21% Similarity=0.293 Sum_probs=171.6
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~--------- 160 (652)
...|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 346999999999998889999999999999999999999999999999999986 589999998732
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
.+|+|++|++.++. .|+++|+....... . ........+
T Consensus 91 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~--------------~------------------------~~~~~~~~~ 131 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLF--------------E------------------------KLSRAEMDE 131 (260)
T ss_pred HHhcceEEEecCCccCc-CcHHHHHhhhHhhc--------------C------------------------CCCHHHHHH
Confidence 25999999987655 89999985321100 0 001111233
Q ss_pred HHHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
++.++++.+|+. ....++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ .+.|||++
T Consensus 132 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~ 211 (260)
T PRK10744 132 RVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIV 211 (260)
T ss_pred HHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 455667777763 1345778899999999999999999999999999999999999999999888753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||+++++..+||+++++++|++. ..|+.+++
T Consensus 212 sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 242 (260)
T PRK10744 212 THNMQQAARCSDYTAFMYLGELI-EFGNTDTI 242 (260)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999984 55665554
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=338.25 Aligned_cols=207 Identities=24% Similarity=0.363 Sum_probs=173.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q 168 (652)
+|+++|++++|++.. .++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 378999999998644 38999999999999999999999999999999999999999998753 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++..|+.||+...+... .. .....+.++.++++.+|+
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~-------------~~--------------------------~~~~~~~~~~~~l~~~~l 119 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPG-------------LK--------------------------LNAAQREKLHAIARQMGI 119 (232)
T ss_pred ccccccCCcHHHHHhcccccc-------------cC--------------------------CCHHHHHHHHHHHHHcCc
Confidence 998877889999985321100 00 000113456678888898
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+||||||||++||||++.+|++|||||||+|||+.+++.+.++|++ .|+|||++||+++++..+||
T Consensus 120 ~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 120 E-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred H-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 6 578899999999999999999999999999999999999999999998887642 48899999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
+|+++++|++. +.|+++++..
T Consensus 199 ~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 199 RSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred EEEEEECCEEE-EeCCHHHHHh
Confidence 99999999984 6788766543
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=350.78 Aligned_cols=205 Identities=23% Similarity=0.290 Sum_probs=174.3
Q ss_pred EEEEEeeeeEeCCe-----eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~-----~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
+|+++|++++|++. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999743 5999999999999999999999999999999999999999999999865420
Q ss_pred -------------------------cceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhc
Q 006275 490 -------------------------PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLD 538 (652)
Q Consensus 490 -------------------------~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~ 538 (652)
.+|++|+....+ +..|+.+|+.+.... ....++.++++.+|+..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL-FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccc-ccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 245666543333 457999999865321 113457889999999646789
Q ss_pred cCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeC
Q 006275 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKG 615 (652)
Q Consensus 539 ~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~ 615 (652)
+++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++. +.|||+||||++++..+||||++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999998764 56999999999999999999999999
Q ss_pred CEEEeecCChhhHhh
Q 006275 616 SNLQDYAGDYNVCFT 630 (652)
Q Consensus 616 g~i~~~~g~~~~~~~ 630 (652)
|++. ..|++++...
T Consensus 241 G~i~-~~g~~~~~~~ 254 (305)
T PRK13651 241 GKII-KDGDTYDILS 254 (305)
T ss_pred CEEE-EECCHHHHhc
Confidence 9987 4577776543
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=340.87 Aligned_cols=210 Identities=20% Similarity=0.323 Sum_probs=171.7
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC--C---CCcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~--p---~~G~i~~~~~~---------- 160 (652)
+.|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|..
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 35899999999998889999999999999999999999999999999999986 4 68999998732
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..++|++|++.+++..|+.||+...+... . .......+.+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--------------~------------------------~~~~~~~~~~ 124 (252)
T PRK14256 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--------------G------------------------RVNRSEADEI 124 (252)
T ss_pred hhccEEEEecCCCCCCcCcHHHHHHhHHHhc--------------C------------------------CCCHHHHHHH
Confidence 24999999998877789999985321100 0 0000112234
Q ss_pred HHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.++++.+|+.. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .++|||+||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivs 204 (252)
T PRK14256 125 VESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204 (252)
T ss_pred HHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 556677777642 245677899999999999999999999999999999999999999999888753 368999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|+++++..+|||++++++|++. ..|+.+++
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 234 (252)
T PRK14256 205 HNMQQAARVSDYTAFFYMGDLV-ECGETKKI 234 (252)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999974 55765554
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=337.07 Aligned_cols=197 Identities=26% Similarity=0.449 Sum_probs=166.5
Q ss_pred EEEEEeeeeEeCCe----eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~----~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
+|+++||+++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999765 7999999999999999999999999999999999999999999999997652
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhh----ccH---HH-HHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED----WRI---DD-IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~----~~~---~~-~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.+|++|+....+.+..|+.+|+...... ... .. +.++++.+++.....++++.+|||||||||+|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 1234444322345678999998754211 111 12 247889999854567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 9999999999999999999999999999764 4699999999999999999999999999863
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=343.00 Aligned_cols=212 Identities=18% Similarity=0.285 Sum_probs=173.1
Q ss_pred CCCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC--------
Q 006275 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN-------- 160 (652)
Q Consensus 94 ~~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~-------- 160 (652)
.++.|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 34579999999999988899999999999999999999999999999999999975 89999998732
Q ss_pred ----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHH
Q 006275 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (652)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (652)
..++|++|++.+++ .|+.||+...... . .+. .......
T Consensus 96 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~-----------~-~~~-------------------------~~~~~~~ 137 (267)
T PRK14235 96 VELRARVGMVFQKPNPFP-KSIYENVAYGPRI-----------H-GLA-------------------------RSKAELD 137 (267)
T ss_pred HHHhhceEEEecCCCCCC-CcHHHHHHHHHHh-----------c-ccc-------------------------cchHHHH
Confidence 24899999987765 5999998532100 0 000 0001123
Q ss_pred HHHHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEE
Q 006275 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (652)
Q Consensus 237 ~~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIi 311 (652)
.++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||+
T Consensus 138 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiii 217 (267)
T PRK14235 138 EIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVI 217 (267)
T ss_pred HHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 34566777778742 245778999999999999999999999999999999999999999999988753 3689999
Q ss_pred EecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 312 vsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+||+++++..+||++++|++|++. ..|+.+++
T Consensus 218 vtH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 249 (267)
T PRK14235 218 VTHSMQQAARVSQRTAFFHLGNLV-EVGDTEKM 249 (267)
T ss_pred EEcCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999984 56765554
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=339.13 Aligned_cols=202 Identities=27% Similarity=0.418 Sum_probs=175.3
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------cce
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNY 492 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~ 492 (652)
+|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 689999999998888999999999999999999999999999999999999999999999997652 123
Q ss_pred ecccccccCCCCCCHHHHHHHhhhh--------------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAED--------------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~--------------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.+|. ..+++..|+.+|+...... .....+.++++.+++. ...++++.+|||||||||+|||||
T Consensus 82 ~~q~--~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 82 KFQK--PTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eccc--cccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHH
Confidence 3333 3566778999999764210 0123577889999995 567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+.+|++|||||||++||+.++..+.++|+++. .|||+|||+++++.++||++++|++|++. ..|+++++.
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-eeCCHHHHh
Confidence 99999999999999999999999999998763 59999999999999999999999999997 457777664
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=345.14 Aligned_cols=208 Identities=24% Similarity=0.364 Sum_probs=173.7
Q ss_pred ceEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------ceE
Q 006275 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKI 163 (652)
Q Consensus 97 ~i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------~~i 163 (652)
+|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.. ..|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 3789999999964 579999999999999999999999999999999999999999999998743 248
Q ss_pred EEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
+|++|++. ..+..||.||+...... . .........++.++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~--------------~-------------------------~~~~~~~~~~~~~~ 121 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLN--------------L-------------------------GLSKEEVEKRVKEA 121 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHH--------------c-------------------------CCCHHHHHHHHHHH
Confidence 99999973 33457999998521100 0 00011223456678
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l 319 (652)
++.+|+. +..++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|++ .|.|||++|||++++
T Consensus 122 l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~ 200 (275)
T PRK13639 122 LKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLV 200 (275)
T ss_pred HHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 8888986 577899999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
..+||+|++|++|++. ..|+.+++.
T Consensus 201 ~~~~d~i~~l~~G~i~-~~g~~~~~~ 225 (275)
T PRK13639 201 PVYADKVYVMSDGKII-KEGTPKEVF 225 (275)
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999984 568766654
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=337.47 Aligned_cols=201 Identities=26% Similarity=0.401 Sum_probs=172.7
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------ccee
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYF 493 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~~ 493 (652)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 47899999999889999999999999999999999999999999999999999999999997642 1234
Q ss_pred cccccccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlL 567 (652)
+|. ..+++..|+.+|+...... . ....+.++++.+++. +..++.+.+||||||||++|||||+.+|++|||
T Consensus 81 ~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 157 (232)
T cd03218 81 PQE--ASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLL 157 (232)
T ss_pred cCC--ccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 443 3456678999999764321 1 123467889999995 677899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 568 DEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 568 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
||||++||+.+++.+.++|++. +.|||++|||++++..+||++++|++|++. ..|+.++..
T Consensus 158 DEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 221 (232)
T cd03218 158 DEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL-AEGTPEEIA 221 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EEeCHHHhh
Confidence 9999999999999999998764 459999999999999999999999999997 457766653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=352.20 Aligned_cols=213 Identities=20% Similarity=0.358 Sum_probs=175.6
Q ss_pred CCceEEEeEEEEeC----CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCCC-------
Q 006275 95 SSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~---~G~i~~~~~~------- 160 (652)
++.|+++|+++.|+ ..++|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 45799999999995 256999999999999999999999999999999999999996 9999998753
Q ss_pred -------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCC
Q 006275 161 -------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (652)
Q Consensus 161 -------~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (652)
..|+|++|++ .+.+.+|+.+++...+... ....
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~--------------------------------------~~~~ 131 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH--------------------------------------KGMS 131 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHh--------------------------------------cCCC
Confidence 2599999998 4667789998875321000 0011
Q ss_pred hhcHHHHHHHHhhhcCCCc--ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cC
Q 006275 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (652)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~ 305 (652)
..+...++.++++.+|+.. ...++++.+|||||+|||+|||||+.+|++||+||||++||+.++..+.++|+ +.
T Consensus 132 ~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 211 (330)
T PRK09473 132 KAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF 211 (330)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc
Confidence 1123345667788888863 23567899999999999999999999999999999999999999999988764 34
Q ss_pred CCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 306 g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
|.|+|+||||++.+.++||+|++|.+|++ +..|+.+++..
T Consensus 212 g~til~iTHdl~~~~~~~Dri~vm~~G~i-ve~g~~~~i~~ 251 (330)
T PRK09473 212 NTAIIMITHDLGVVAGICDKVLVMYAGRT-MEYGNARDVFY 251 (330)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEE-EEECCHHHHHh
Confidence 89999999999999999999999999998 46787666543
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=335.64 Aligned_cols=199 Identities=31% Similarity=0.457 Sum_probs=171.0
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------ceEEEEeccCc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------MKIAFLSQEFE 171 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------~~i~~v~Q~~~ 171 (652)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 478999999998889999999999999999999999999999999999999999999998743 36999999988
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcc
Q 006275 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (652)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (652)
+++..|+++|+..... +. .. .+.++.++++.+|+. +
T Consensus 81 ~~~~~t~~~~~~~~~~---------------~~------------------------~~----~~~~~~~~l~~~~l~-~ 116 (223)
T TIGR03740 81 LYENLTARENLKVHTT---------------LL------------------------GL----PDSRIDEVLNIVDLT-N 116 (223)
T ss_pred ccccCCHHHHHHHHHH---------------Hc------------------------CC----CHHHHHHHHHHcCCc-H
Confidence 8778899999742110 00 00 023455678888886 5
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEE
Q 006275 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVE 328 (652)
Q Consensus 252 ~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~ 328 (652)
..++.+.+|||||+||++||||++.+|++|||||||+|||+.+++.+.++|+ +.|.|||++|||++++..+||+|++
T Consensus 117 ~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 196 (223)
T TIGR03740 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGI 196 (223)
T ss_pred HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEE
Confidence 6788899999999999999999999999999999999999999999988874 3578999999999999999999999
Q ss_pred EcCCeEEEecCCh
Q 006275 329 TEMGVSRTYEGNY 341 (652)
Q Consensus 329 l~~G~~~~~~g~~ 341 (652)
+++|++. ..|+.
T Consensus 197 l~~g~i~-~~~~~ 208 (223)
T TIGR03740 197 ISEGVLG-YQGKI 208 (223)
T ss_pred EeCCEEE-EecCh
Confidence 9999984 45553
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=345.98 Aligned_cols=208 Identities=23% Similarity=0.362 Sum_probs=174.8
Q ss_pred CceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
++|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.. ..|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 36999999999974 469999999999999999999999999999999999999999999998853 259
Q ss_pred EEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
+|++|++. .++..||.||+....... .....+...++.++
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~---------------------------------------~~~~~~~~~~~~~~ 124 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENI---------------------------------------GVPREEMVERVDQA 124 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhC---------------------------------------CCCHHHHHHHHHHH
Confidence 99999984 556789999985321000 00111223456778
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (652)
++.+|+. +..++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|.|||++||++++
T Consensus 125 l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 125 LRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred HHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 8888986 678889999999999999999999999999999999999999999999988752 38999999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+. .||+|+++++|++ .+.|+.+++.
T Consensus 204 ~~-~~d~i~~l~~G~i-~~~g~~~~~~ 228 (279)
T PRK13635 204 AA-QADRVIVMNKGEI-LEEGTPEEIF 228 (279)
T ss_pred HH-cCCEEEEEECCEE-EEECCHHHHh
Confidence 96 5999999999997 4678766554
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=351.62 Aligned_cols=208 Identities=24% Similarity=0.406 Sum_probs=178.4
Q ss_pred CcEEEEEeeeeEeCC----------eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--
Q 006275 422 RSVVTIKNLEFGYED----------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~----------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-- 489 (652)
.++|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 457999999999962 47899999999999999999999999999999999999999999999998752
Q ss_pred -----------cceecccccccCCCCCCHHHHHHHhhhh-------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHH
Q 006275 490 -----------PNYFEQNQAEALDLDKTVLETVAEAAED-------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (652)
Q Consensus 490 -----------~~~~~~~~~~~~~~~~tv~e~~~~~~~~-------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqr 551 (652)
.++++|+....+++.+++.+++...... .....+.++|+.+|+.....++++.+||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 2356666544577888999888643211 1134578899999996556799999999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhh
Q 006275 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNV 627 (652)
Q Consensus 552 v~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~ 627 (652)
|+|||||+.+|+|||+||||++||..++..+.++|.++ +.|||+||||+..+.++||||++|++|++++ .|+.++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive-~g~~~~ 241 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE-KGTKEQ 241 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 99999999999999999999999999999999988754 5699999999999999999999999999985 476666
Q ss_pred Hhh
Q 006275 628 CFT 630 (652)
Q Consensus 628 ~~~ 630 (652)
+++
T Consensus 242 ~~~ 244 (327)
T PRK11308 242 IFN 244 (327)
T ss_pred Hhc
Confidence 543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=341.30 Aligned_cols=206 Identities=23% Similarity=0.344 Sum_probs=176.0
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (652)
+..|+++||++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 45699999999999889999999999999999999999999999999999999999999999997652
Q ss_pred -----------cceecccccccCCCCCCHHHHHHHhhh-------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHH
Q 006275 490 -----------PNYFEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (652)
Q Consensus 490 -----------~~~~~~~~~~~~~~~~tv~e~~~~~~~-------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqr 551 (652)
.+|++|+ ..+++..|+.+|+..... .....++.++++.+|+.....++++.+||||||||
T Consensus 83 ~~~~~~~~~~~i~~v~q~--~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQH--FNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cchHHHHHhhceEEEecC--cccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 1233433 345566899999975321 11124577899999996433488899999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 552 v~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
++|||||+.+|++|||||||++||+.+++.+.++|+++ +.|||+||||++++..+||||++|++|+++ +.|+++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 239 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQL 239 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 99999999999999999999999999999999998765 469999999999999999999999999998 45887776
Q ss_pred hh
Q 006275 629 FT 630 (652)
Q Consensus 629 ~~ 630 (652)
..
T Consensus 240 ~~ 241 (257)
T PRK10619 240 FG 241 (257)
T ss_pred hh
Confidence 54
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=343.33 Aligned_cols=210 Identities=20% Similarity=0.286 Sum_probs=169.5
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~--------- 160 (652)
.++|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 19 EHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred CceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 346999999999998889999999999999999999999999999999999864 789999987632
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..++|++|++.+++ .|+++|+...+... . . ......+.
T Consensus 99 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~--~---------------------~~~~~~~~ 139 (268)
T PRK14248 99 NLRREIGMVFQKPNPFP-KSIYNNITHALKYA---------------G--E---------------------RRKSVLDE 139 (268)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhc---------------C--C---------------------CcHHHHHH
Confidence 25999999987765 59999986321100 0 0 00001122
Q ss_pred HHHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
.+.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||++
T Consensus 140 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~ 219 (268)
T PRK14248 140 IVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIV 219 (268)
T ss_pred HHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3344555666531 345788999999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||+++++..+||+|++|++|++. +.|+.+++
T Consensus 220 tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 250 (268)
T PRK14248 220 THNMQQALRVSDRTAFFLNGDLV-EYDQTEQI 250 (268)
T ss_pred EeCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999984 56766554
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=383.70 Aligned_cols=211 Identities=30% Similarity=0.488 Sum_probs=184.2
Q ss_pred CCCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccC-cc
Q 006275 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF-EV 172 (652)
Q Consensus 94 ~~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~-~~ 172 (652)
...+|+++|++++|+++++|+++||+|++|+++||+|||||||||||++|+|+++|++|+|.+ |....|||++|++ .+
T Consensus 316 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l 394 (635)
T PRK11147 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAEL 394 (635)
T ss_pred CCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCccccc
Confidence 345799999999999888999999999999999999999999999999999999999999998 5667899999986 46
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccc
Q 006275 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (652)
Q Consensus 173 ~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (652)
++..||.+|+...... .........+.+++..+|+..+.
T Consensus 395 ~~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~~~~ 433 (635)
T PRK11147 395 DPEKTVMDNLAEGKQE-----------------------------------------VMVNGRPRHVLGYLQDFLFHPKR 433 (635)
T ss_pred CCCCCHHHHHHhhccc-----------------------------------------ccccchHHHHHHHHHhcCCCHHH
Confidence 6778999998532100 00000123456778888986556
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEc-C
Q 006275 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE-M 331 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~-~ 331 (652)
.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..|.++|++.+.|||+||||++++..+||+|++++ +
T Consensus 434 ~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~ 513 (635)
T PRK11147 434 AMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGN 513 (635)
T ss_pred HhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCC
Confidence 788999999999999999999999999999999999999999999999998887899999999999999999999997 8
Q ss_pred CeEEEecCChHHHHH
Q 006275 332 GVSRTYEGNYSQYVL 346 (652)
Q Consensus 332 G~~~~~~g~~~~~~~ 346 (652)
|++..|.|+|++|..
T Consensus 514 g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 514 GKIGRYVGGYHDARQ 528 (635)
T ss_pred CeEEEccCCHHHHHH
Confidence 999999999999964
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=347.59 Aligned_cols=205 Identities=25% Similarity=0.354 Sum_probs=174.3
Q ss_pred EEEEEeeeeEeCC-----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3899999999963 36999999999999999999999999999999999999999999999997752
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.+|++|+....++ ..|+.+|+.+.... .....+.++++.+|+..+..++++.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLF-EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccc-hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 2455665322333 45999999865321 11245678899999964667899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|++. ..|++++.+.
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 235 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV-SQTSPKELFK 235 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999999864 469999999999999999999999999997 4577776543
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=344.55 Aligned_cols=201 Identities=28% Similarity=0.400 Sum_probs=173.4
Q ss_pred EEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cce
Q 006275 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (652)
Q Consensus 424 ~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (652)
+|+++|+++.|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 699999999996 567999999999999999999999999999999999999999999999998752 245
Q ss_pred ecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
++|+.. ...+..|+.+|+.+.... .....+.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 84 v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 84 VFQDPD-DQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EecChh-hhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 555432 233467999999864321 1124577889999994 67899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhh
Q 006275 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNV 627 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~ 627 (652)
|||||++||+.++..+.++|+++ +.|||+||||++++.++|||+++|++|++.. .|++++
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~ 224 (274)
T PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA-EGDKSL 224 (274)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 99999999999999999999765 4699999999999999999999999999974 566654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=341.34 Aligned_cols=207 Identities=22% Similarity=0.323 Sum_probs=175.2
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee-----cc--------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----VL-------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-----~~-------- 489 (652)
.+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 47999999999988889999999999999999999999999999999999999999999999976 31
Q ss_pred ------cceecccccccCCCCCCHHHHHHHhhh---h----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHH
Q 006275 490 ------PNYFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 ------~~~~~~~~~~~~~~~~tv~e~~~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.+|++|+....+.+..++.+|+..... . .....+.++++.+++.....++.+.+||||||||++|||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 235555543345566788888764321 0 112346788999998544678999999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++..
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~~ 241 (258)
T PRK11701 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQVLD 241 (258)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHhc
Confidence 999999999999999999999999999998753 569999999999999999999999999997 4577776643
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=343.07 Aligned_cols=205 Identities=29% Similarity=0.394 Sum_probs=176.0
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------c
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (652)
++++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 8 ~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred CCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 456799999999998889999999999999999999999999999999999999999999999997652 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhh----------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
+|++|. ..+.+..|+.+|+..... ......+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 88 ~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 88 AYLPQQ--LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred EEeccC--CCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 344443 245567899999976421 01123577899999994 67899999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+|+||||||||++||+.+++.+.++|.++ +.|||+||||++++.++||++++|++|++. ..|+.+++.
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~-~~~~~~~~~ 236 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI-AQGTPAELM 236 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHhc
Confidence 99999999999999999999999998754 469999999999999999999999999997 456666543
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=335.04 Aligned_cols=200 Identities=28% Similarity=0.405 Sum_probs=169.9
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------ccee
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYF 493 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~~ 493 (652)
|+++||+++|+++++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 57899999999888999999999999999999999999999999999999999999999997652 1244
Q ss_pred cccccccCCCCCCHHHHHHHhhhhc----cHHHHHHHHhhC-CCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 494 EQNQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRC-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~~----~~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
+|. ..+++.+|+.+|+....... ....+.++++.+ ++ ....++++.+||||||||++|||||+.+|++||||
T Consensus 81 ~q~--~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 157 (222)
T cd03224 81 PEG--RRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL-KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD 157 (222)
T ss_pred ccc--cccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhh-hhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 443 34667789999997653221 123355677777 45 45678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 569 EPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 569 EPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
|||++||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|++.. .|+.++.
T Consensus 158 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 219 (222)
T cd03224 158 EPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGTAAEL 219 (222)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCCHHHH
Confidence 999999999999999999865 4699999999999999999999999999974 4666554
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=333.16 Aligned_cols=191 Identities=28% Similarity=0.434 Sum_probs=166.1
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------cce
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PNY 492 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~~ 492 (652)
|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 47899999999889999999999999999999999999999999999999999999999998652 124
Q ss_pred ecccccccCCCCCCHHHHHHHhhh---hc----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
++|. ..+++..|+.+|+..... .. ....+.++++.+++. ...++++.+||||||||++|||||+.+|++|
T Consensus 81 ~~q~--~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 157 (213)
T cd03262 81 VFQQ--FNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVM 157 (213)
T ss_pred Eecc--cccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 4443 345667899999876421 11 123567889999995 5679999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEE
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i 618 (652)
||||||+|||+.+++.+.+.|+++ +.|||++|||++++.++||++++|++|++
T Consensus 158 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 158 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999865 46999999999999999999999999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=334.34 Aligned_cols=199 Identities=26% Similarity=0.381 Sum_probs=171.4
Q ss_pred EEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------ccee
Q 006275 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYF 493 (652)
Q Consensus 425 i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~ 493 (652)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 578999999986 78999999999999999999999999999999999999999999999998752 2344
Q ss_pred cccccccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlL 567 (652)
.|+ ..+++..|+.+|+...... . ....+.++++.+++. +..++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 81 PQF--DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cCc--CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 543 3455678999999764321 1 123567889999994 667899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhh
Q 006275 568 DEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNV 627 (652)
Q Consensus 568 DEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~ 627 (652)
||||++||+.+++.+.++|+++. .|||++|||++++..+||++++|++|++.. .|++++
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~ 218 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC-IGSPQE 218 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe-cCCHHH
Confidence 99999999999999999998753 599999999999999999999999999974 465543
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=338.82 Aligned_cols=210 Identities=18% Similarity=0.269 Sum_probs=171.4
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC---CCC--CCcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ---EEP--DSGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~---~~p--~~G~i~~~~~~---------- 160 (652)
++|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+ ++| ++|+|.++|.+
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 358999999999988899999999999999999999999999999999997 455 58999998742
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..++|++|++.++. .|+.+|+...+... . .......++.
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~---------------~-----------------------~~~~~~~~~~ 122 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRVN---------------G-----------------------VKDNAFIRQR 122 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHHc---------------C-----------------------CCcHHHHHHH
Confidence 14999999987765 69999985321100 0 0000012334
Q ss_pred HHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .++|||+||
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivt 202 (250)
T PRK14245 123 VEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVT 202 (250)
T ss_pred HHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 556777778742 245778899999999999999999999999999999999999999999988753 478999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+++++.++||+|++|++|++ ...|+.+++.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~~-~~~~~~~~~~ 233 (250)
T PRK14245 203 HNMQQAARVSDKTAFFYMGEM-VEYDDTKKIF 233 (250)
T ss_pred CCHHHHHhhCCEEEEEECCEE-EEECCHHHHh
Confidence 999999999999999999998 4667766653
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=334.12 Aligned_cols=194 Identities=26% Similarity=0.412 Sum_probs=168.1
Q ss_pred EEEEEeeeeEe-CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------
Q 006275 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y-~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (652)
+|+++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 47899999999 6678999999999999999999999999999999999999999999999997652
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
.+|++|. ..+++..|+.+|+...... . ....+.++++.+++. +..++++.+||||||||++|||||+.+|+
T Consensus 81 i~~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 81 IGMIFQD--HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred eEEEecC--ccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 1244443 3455778999999764211 1 123467889999995 56789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
+|||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|+++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999998865 4699999999999999999999999999864
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=343.23 Aligned_cols=208 Identities=22% Similarity=0.334 Sum_probs=174.8
Q ss_pred CcEEEEEeeeeEeCC---------eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---
Q 006275 422 RSVVTIKNLEFGYED---------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~---------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--- 489 (652)
+++|+++||+++|+. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 357999999999962 46999999999999999999999999999999999999999999999997652
Q ss_pred -------cceecccccccCCCCCCHHHHHHHhhhh-------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHH
Q 006275 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED-------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 -------~~~~~~~~~~~~~~~~tv~e~~~~~~~~-------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|++|+....+.+..|+.+++...... ...+.+.++++.+++.....++++.+|||||||||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 1344444322245567888887643211 11235778899999954567888999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||+.+|+||||||||++||+.++..+.+.|.++ +.|||+|||+++++..+||++++|++|++. ..|+++++.+
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 239 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVLA 239 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHhc
Confidence 9999999999999999999999999999998864 569999999999999999999999999997 4677777654
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=327.37 Aligned_cols=207 Identities=25% Similarity=0.484 Sum_probs=183.9
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc------eEEEEeccC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEF 170 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~------~i~~v~Q~~ 170 (652)
++++++|+++|+++.+++|+||+|++|++.|++|+|||||||.+|+|+|+++|++|+|.++|.+. +|||+|.+-
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 48999999999999999999999999999999999999999999999999999999999998543 699999999
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc
Q 006275 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (652)
Q Consensus 171 ~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (652)
.+++.+||.|.+.. |.. + ..++..++..++..+|+++++.
T Consensus 82 GLy~k~tv~dql~y-la~--------------L------------------------kGm~~~e~~~~~~~wLer~~i~- 121 (300)
T COG4152 82 GLYPKMTVEDQLKY-LAE--------------L------------------------KGMPKAEIQKKLQAWLERLEIV- 121 (300)
T ss_pred ccCccCcHHHHHHH-HHH--------------h------------------------cCCcHHHHHHHHHHHHHhcccc-
Confidence 99999999998742 100 1 1244456677888899999997
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhcCeEE
Q 006275 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIV 327 (652)
Q Consensus 251 ~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l~~~~d~ii 327 (652)
....+++.+||-|++|++.+..+++++|+++|||||||||||...+.|.+.+ ++.|.|||++||.++.+.++||+++
T Consensus 122 ~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll 201 (300)
T COG4152 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL 201 (300)
T ss_pred ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh
Confidence 5677889999999999999999999999999999999999999999998764 6789999999999999999999999
Q ss_pred EEcCCeEEEecCChHHH
Q 006275 328 ETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 328 ~l~~G~~~~~~g~~~~~ 344 (652)
.|+.|.. +..|+..+.
T Consensus 202 mL~kG~~-V~~G~v~~i 217 (300)
T COG4152 202 MLKKGQT-VLYGTVEDI 217 (300)
T ss_pred eecCCce-EEeccHHHH
Confidence 9999987 467876554
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=338.05 Aligned_cols=203 Identities=26% Similarity=0.404 Sum_probs=173.9
Q ss_pred EEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------ccee
Q 006275 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (652)
Q Consensus 425 i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (652)
++++|++++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999987 78999999999999999999999999999999999999999999999997652 1344
Q ss_pred cccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCCh-hhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
+|. ..+++..|+.+|+...... .....+.++++.+++.. ...++++.+|||||||||+|||||+.+|++||
T Consensus 81 ~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 81 IQQ--IGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred ccC--ccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 443 3466678999999764221 11235778899999963 36789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 567 LDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||||++||+.++..+.+.|.+. +.|||+||||++++..+||+|++|++|++.. .|+.++..+
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 225 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ-VGTPDEILR 225 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHHc
Confidence 99999999999999999998864 4699999999999999999999999999974 577666543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=336.64 Aligned_cols=192 Identities=21% Similarity=0.339 Sum_probs=162.9
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
++|+++|+++.|+++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 46999999999988889999999999999999999999999999999999999999999998742 35999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.++. .|++||+..... +. .......++.++++.
T Consensus 86 ~~q~~~l~~-~tv~enl~~~~~---------------~~--------------------------~~~~~~~~~~~~l~~ 123 (225)
T PRK10247 86 CAQTPTLFG-DTVYDNLIFPWQ---------------IR--------------------------NQQPDPAIFLDDLER 123 (225)
T ss_pred Eeccccccc-ccHHHHHHhHHh---------------hc--------------------------CCChHHHHHHHHHHH
Confidence 999988754 599999752100 00 000012344567888
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~ 321 (652)
+|+.....++++.+|||||+|||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|.|||++||+++++.
T Consensus 124 ~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~- 202 (225)
T PRK10247 124 FALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN- 202 (225)
T ss_pred cCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-
Confidence 88864467889999999999999999999999999999999999999999999887753 4889999999999995
Q ss_pred hcCeEEEEc
Q 006275 322 LCTKIVETE 330 (652)
Q Consensus 322 ~~d~ii~l~ 330 (652)
.||++++|+
T Consensus 203 ~~d~i~~l~ 211 (225)
T PRK10247 203 HADKVITLQ 211 (225)
T ss_pred hCCEEEEEe
Confidence 699999996
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=351.69 Aligned_cols=216 Identities=21% Similarity=0.297 Sum_probs=174.3
Q ss_pred CceEEEeEEEEeC----CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC----CCCcEEEECCCC-------
Q 006275 96 SGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSN------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~----p~~G~i~~~~~~------- 160 (652)
++|+++|++++|+ ...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 3689999999993 3579999999999999999999999999999999999997 589999998742
Q ss_pred -------ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCC
Q 006275 161 -------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (652)
Q Consensus 161 -------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (652)
..|+|++|++. +.+..||.+++...+... . .. . . + ...
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~-~-----------~~--~-------~---------~---~~~ 128 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGW-T-----------YK--G-------R---------W---WQR 128 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhh-h-----------cc--c-------c---------c---ccc
Confidence 25999999985 446678998875211000 0 00 0 0 0 000
Q ss_pred hhcHHHHHHHHhhhcCCCc--ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----C
Q 006275 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (652)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~ 305 (652)
.....+++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .
T Consensus 129 ~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 208 (330)
T PRK15093 129 FGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN 208 (330)
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 0122356678899999963 246788999999999999999999999999999999999999999999888753 5
Q ss_pred CCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 306 g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|.|||+||||++++.++||+|++|.+|++ +..|+..++.
T Consensus 209 g~tii~itHdl~~v~~~~dri~vm~~G~i-ve~g~~~~i~ 247 (330)
T PRK15093 209 NTTILLISHDLQMLSQWADKINVLYCGQT-VETAPSKELV 247 (330)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEE-EEECCHHHHH
Confidence 89999999999999999999999999998 4677765543
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=335.45 Aligned_cols=206 Identities=27% Similarity=0.429 Sum_probs=174.6
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q~ 169 (652)
|+++|++++|+++++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 478999999998889999999999999999999999999999999999999999999998742 369999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.++...|+.+|+...+... ..........+..+++.+|+.
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLK---------------------------------------KLPKAEIKERVAEALDLVQLE 121 (232)
T ss_pred cccCCCCcHHHHHHHHHHhc---------------------------------------CCCHHHHHHHHHHHHHHcCCc
Confidence 98777789999975321100 000111234556778888986
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (652)
+..++.+.+|||||+||++|||||+.+|++|||||||+|||+.+++++.++|++ .|+|||++||+++++.++||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 122 -GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred -hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 677888999999999999999999999999999999999999999999988743 389999999999999999999
Q ss_pred EEEEcCCeEEEecCChHHH
Q 006275 326 IVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 326 ii~l~~G~~~~~~g~~~~~ 344 (652)
++++++|++. +.|+..++
T Consensus 201 i~~l~~G~~~-~~~~~~~~ 218 (232)
T cd03300 201 IAVMNKGKIQ-QIGTPEEI 218 (232)
T ss_pred EEEEECCEEE-ecCCHHHH
Confidence 9999999984 55665444
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=336.10 Aligned_cols=203 Identities=27% Similarity=0.394 Sum_probs=173.7
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------cceec
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFE 494 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~ 494 (652)
+|+++|++++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 478999999999889999999999999999999999999999999999999999999999997652 23444
Q ss_pred ccccccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 495 QNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
|+ ..+++..|+.+|+...... . ....+.++++.+|+. ...++++.+||||||||++|||||+.+|++||||
T Consensus 81 q~--~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 81 QQ--PTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred CC--CCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 43 3455678999998764321 1 123567889999995 5678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 569 EPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 569 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||++||+.+++.+.+.|.++ +.|||+||||++++.. ||++++|++|++.. .|++++....
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~-~~~~~~~~~~ 222 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLA-DGAAAELRGA 222 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEE-eCCHHHHHHH
Confidence 999999999999999998764 4699999999999975 99999999999974 5777665543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=339.35 Aligned_cols=203 Identities=27% Similarity=0.426 Sum_probs=174.2
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (652)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 689999999999888999999999999999999999999999999999999999999999987652
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhh---hc----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.+|++|+ ..+++..|+.+|+..... .. ....+.++++.+|+. ...++++.+|||||||||+|||||
T Consensus 83 ~~~~i~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al 159 (250)
T PRK11264 83 LRQHVGFVFQN--FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARAL 159 (250)
T ss_pred hhhhEEEEecC--cccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHH
Confidence 1233333 345667899999975321 11 123467889999995 567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|++. ..|+.+++.+
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 233 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV-EQGPAKALFA 233 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999999999998764 469999999999999999999999999997 4577776643
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=332.33 Aligned_cols=191 Identities=29% Similarity=0.388 Sum_probs=165.4
Q ss_pred EEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------c
Q 006275 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------P 490 (652)
Q Consensus 425 i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------~ 490 (652)
++++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964 68999999999999999999999999999999999999999999999997652 1
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
.|++|+ ..+++..|+.+|+...... ...+.+.++++.+++. ...++++.+||||||||++|||||+.+|++
T Consensus 81 ~~v~q~--~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 81 GVVFQD--FRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred EEEecC--chhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 234443 3466678999999865321 1123567889999994 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEE
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i 618 (652)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999865 46999999999999999999999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=335.83 Aligned_cols=197 Identities=30% Similarity=0.461 Sum_probs=167.9
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC-----CCCeeEEEECceecc----------
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~-----~p~~G~i~~~g~~~~---------- 489 (652)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 47899999999889999999999999999999999999999999999999 999999999998652
Q ss_pred --cceecccccccCCCCCCHHHHHHHhhhh---c----cHHHHHHHHhhCCCChhhhccC--cCCCCHHHHHHHHHHHHH
Q 006275 490 --PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFKADMLDRK--VSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 --~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~----~~~~~~~~L~~~~l~~~~~~~~--~~~LSgGqrqrv~LAral 558 (652)
.+|++|+ ..++ ..|+.+|+...... . ....+.++++.+|+. +..++. +.+||||||||++|||||
T Consensus 81 ~~i~~~~q~--~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LSgG~~qrv~la~al 156 (227)
T cd03260 81 RRVGMVFQK--PNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW-DEVKDRLHALGLSGGQQQRLCLARAL 156 (227)
T ss_pred hhEEEEecC--chhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCC-hHHhccCCcccCCHHHHHHHHHHHHH
Confidence 1244443 2344 78999999764321 1 124577889999995 445555 599999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~ 626 (652)
+.+|++|||||||++||+.++..+.+.|+++. .|||++|||++++..+||++++|++|++.. .|+++
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~ 225 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE-FGPTE 225 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE-ecCcc
Confidence 99999999999999999999999999998763 599999999999999999999999999974 35543
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=336.77 Aligned_cols=203 Identities=27% Similarity=0.376 Sum_probs=173.9
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------ccee
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (652)
.|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 489999999998888999999999999999999999999999999999999999999999997652 1344
Q ss_pred cccccccCCCCCCHHHHHHHhhh--hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 494 EQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
+|+ ..++ ..|+.+|+..... .....++.++++.+++..+..++++.+||||||||++|||||+.+|++|||||||
T Consensus 83 ~q~--~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 83 FQQ--PHLF-EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred ecC--chhc-hhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 444 2333 3699999875422 1223457788999999645678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 572 NHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
++||+.+++.+.+.|++. +.|||+||||++++..+||+|++|++|++.. .|+.++...
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 221 (241)
T PRK14250 160 SALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE-YAKTYDFFT 221 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE-eCCHHHHhc
Confidence 999999999999998764 5699999999999999999999999999974 466666543
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=354.63 Aligned_cols=199 Identities=26% Similarity=0.410 Sum_probs=170.3
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------ce
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------~~ 162 (652)
+|++ |++++|+++. + |+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..
T Consensus 1 ~l~~-~l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 3777 9999998754 3 8999999999999999999999999999999999999999987632 25
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
++|++|++.+++.+||+||+...+.. ...+++.++
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~---------------------------------------------~~~~~~~~~ 112 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAK---------------------------------------------SMVAQFDKI 112 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhh---------------------------------------------hhHHHHHHH
Confidence 99999999988889999998532110 012345577
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (652)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|+|||+||||+++
T Consensus 113 l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~ 191 (352)
T PRK11144 113 VALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE 191 (352)
T ss_pred HHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 8888986 578899999999999999999999999999999999999999999999887743 48899999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+..+||+|++|++|++. ..|+..++.
T Consensus 192 ~~~~~d~i~~l~~G~i~-~~g~~~~i~ 217 (352)
T PRK11144 192 ILRLADRVVVLEQGKVK-AFGPLEEVW 217 (352)
T ss_pred HHHhCCEEEEEeCCEEE-EecCHHHHH
Confidence 99999999999999984 557655543
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=335.38 Aligned_cols=206 Identities=30% Similarity=0.425 Sum_probs=174.2
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q~ 169 (652)
|+++|+++.|++. +|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4789999999864 8999999999999999999999999999999999999999999998742 269999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+++..|+.||+...+... ........+.+.++++.+|+.
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~l~ 120 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKR---------------------------------------KVDKKEIERKVLEIAEMLGID 120 (235)
T ss_pred CccCCCccHHHHHHHHHHHc---------------------------------------CCCHHHHHHHHHHHHHHcCCh
Confidence 88877889999985321100 001112234556778888986
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (652)
+..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .++|||++||+++++..+||+
T Consensus 121 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 121 -HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred -hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 677888999999999999999999999999999999999999999999988753 389999999999999999999
Q ss_pred EEEEcCCeEEEecCChHHHH
Q 006275 326 IVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 326 ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+++++|++. ..|+++++.
T Consensus 200 i~~l~~G~i~-~~~~~~~~~ 218 (235)
T cd03299 200 VAIMLNGKLI-QVGKPEEVF 218 (235)
T ss_pred EEEEECCEEE-EecCHHHHH
Confidence 9999999884 567765543
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=330.88 Aligned_cols=192 Identities=27% Similarity=0.387 Sum_probs=167.4
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------cceecc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQ 495 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~~ 495 (652)
|+++|+++.|+++++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 47899999998889999999999999 99999999999999999999999999999999997652 134444
Q ss_pred cccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+ ..+++..|+.+|+...... .....+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 80 ~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 156 (211)
T cd03264 80 E--FGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156 (211)
T ss_pred C--CcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3 3456678999998764221 1124577889999995 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 570 PTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
||++||+.+++.+.+.|+++ +.|||+||||++++.++|||+++|++|++..
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 157 PTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999876 4699999999999999999999999999863
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=338.02 Aligned_cols=210 Identities=21% Similarity=0.277 Sum_probs=169.8
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCC--CC---CCcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EP---DSGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p---~~G~i~~~~~~---------- 160 (652)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 3699999999999888999999999999999999999999999999999985 36 59999998742
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..++|++|++.++. .|++||+...... ... .........
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~ 124 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRL---------------KGI-----------------------KDKQVLDEA 124 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHH---------------cCC-----------------------CcHHHHHHH
Confidence 25999999988755 8999998532100 000 000012233
Q ss_pred HHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.++++.+|+.. ...++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++|
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 204 (252)
T PRK14239 125 VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT 204 (252)
T ss_pred HHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 445566666531 345778899999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+++++..+||+|+++++|++. +.|+..++.
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T PRK14239 205 RSMQQASRISDRTGFFLDGDLI-EYNDTKQMF 235 (252)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999984 667765543
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=337.22 Aligned_cols=202 Identities=26% Similarity=0.350 Sum_probs=174.0
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (652)
+|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 589999999999889999999999999999999999999999999999999999999999998641
Q ss_pred --cceecccccccCCCCCCHHHHHHHhh-h---h---ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 490 --PNYFEQNQAEALDLDKTVLETVAEAA-E---D---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 490 --~~~~~~~~~~~~~~~~tv~e~~~~~~-~---~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
.+|++|. ..+++..|+.+|+.... . . .....+.++++.+|+. ...++++.+||||||||++|||||+.
T Consensus 82 ~~i~~~~q~--~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 82 RNVGMVFQQ--YNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred hheEEEecC--ccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1244443 34666789999986421 1 1 1123577889999995 57799999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+|++|||||||++||+.++..+.+.|++. +.|||+||||.+++..+||++++|++|++. +.|+++++.
T Consensus 159 ~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 229 (242)
T PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCFT 229 (242)
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhc
Confidence 99999999999999999999999999864 469999999999999999999999999997 457777653
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=339.59 Aligned_cols=211 Identities=20% Similarity=0.278 Sum_probs=171.2
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC--C---CCcEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~--p---~~G~i~~~~~~--------- 160 (652)
.++|+++|+++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 346999999999998889999999999999999999999999999999999987 3 58999988742
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..++|++|++.+++ .|++||+...... .. .....+...
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~ 130 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFP-QSIFDNVAYGPRI---------------HG-----------------------TKNKKKLQE 130 (259)
T ss_pred HHhhceEEEecCCcccc-cCHHHHHHhHHHh---------------cC-----------------------CCCHHHHHH
Confidence 24999999988765 4999998521100 00 000011223
Q ss_pred HHHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
++.++++.+|+.. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .++|||+|
T Consensus 131 ~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiv 210 (259)
T PRK14274 131 IVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIV 210 (259)
T ss_pred HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4455666667642 245778899999999999999999999999999999999999999999888753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
||+++++.++||||++|++|++. ..|+.+++.
T Consensus 211 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 242 (259)
T PRK14274 211 THNMQQAARVSDQTAFFYMGELV-ECNDTNKMF 242 (259)
T ss_pred EcCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999984 667766553
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=332.41 Aligned_cols=193 Identities=23% Similarity=0.316 Sum_probs=165.9
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-------eEEEEec
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLSQ 168 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~-------~i~~v~Q 168 (652)
++|+++|++++|+++++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|... .++|++|
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q 89 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeec
Confidence 469999999999888899999999999999999999999999999999999999999999987532 4999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++..|++||+..... +. ....++.+.++++.+|+
T Consensus 90 ~~~~~~~~t~~e~l~~~~~---------------~~---------------------------~~~~~~~~~~~l~~~~l 127 (214)
T PRK13543 90 LPGLKADLSTLENLHFLCG---------------LH---------------------------GRRAKQMPGSALAIVGL 127 (214)
T ss_pred CcccccCCcHHHHHHHHHH---------------hc---------------------------CCcHHHHHHHHHHHcCC
Confidence 9887777899999752110 00 00112334567788888
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCe
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ 325 (652)
. +..++++.+|||||||||+||||++.+|++|||||||++||+.+++++.++|+ +.++|||++|||++++.++||+
T Consensus 128 ~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~ 206 (214)
T PRK13543 128 A-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTR 206 (214)
T ss_pred h-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcce
Confidence 6 56788899999999999999999999999999999999999999999988874 3589999999999999999999
Q ss_pred EEEEcC
Q 006275 326 IVETEM 331 (652)
Q Consensus 326 ii~l~~ 331 (652)
+++++.
T Consensus 207 i~~l~~ 212 (214)
T PRK13543 207 MLTLEA 212 (214)
T ss_pred EEEEee
Confidence 998863
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=338.25 Aligned_cols=208 Identities=20% Similarity=0.296 Sum_probs=169.3
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~----------- 160 (652)
+|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 5899999999998889999999999999999999999999999999999997 479999998742
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..++|++|++.++ ..|++||+...+... .. .........+
T Consensus 84 ~~~i~~~~q~~~~~-~~tv~enl~~~~~~~---------------~~-----------------------~~~~~~~~~~ 124 (251)
T PRK14251 84 RKEVGMVFQQPTPF-PFSVYDNVAYGLKIA---------------GV-----------------------KDKELIDQRV 124 (251)
T ss_pred hccEEEEecCCccC-CCcHHHHHHHHHHHc---------------CC-----------------------CCHHHHHHHH
Confidence 2499999998775 479999985321100 00 0000112334
Q ss_pred HHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006275 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (652)
Q Consensus 240 ~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (652)
.++++.+|+. ....++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+|||
T Consensus 125 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH 204 (251)
T PRK14251 125 EESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTH 204 (251)
T ss_pred HHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4556666663 1345778899999999999999999999999999999999999999999888754 3689999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+++++..+||+|++|++|++. ..|+.+++
T Consensus 205 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 233 (251)
T PRK14251 205 NLQQAGRISDQTAFLMNGDLI-EAGPTEEM 233 (251)
T ss_pred CHHHHHhhcCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999985 45665544
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=337.40 Aligned_cols=208 Identities=20% Similarity=0.302 Sum_probs=168.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~----------- 160 (652)
.|+++|+++.|+++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 58999999999888899999999999999999999999999999999999763 69999998742
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..++|++|++.++. .|+++|+...... ... .......+.+
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~---------------~~~-----------------------~~~~~~~~~~ 123 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRT---------------HGI-----------------------KDKKKLDEIV 123 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHh---------------cCC-----------------------CCHHHHHHHH
Confidence 25999999987765 8999998532100 000 0000122334
Q ss_pred HHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006275 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (652)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (652)
.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||+|||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 203 (250)
T PRK14240 124 EKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 45555555531 345778999999999999999999999999999999999999999999888753 3789999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+++.+..+||+|+++++|++. ..|+.+++
T Consensus 204 ~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 232 (250)
T PRK14240 204 NMQQASRISDKTAFFLNGEIV-EFGDTVDL 232 (250)
T ss_pred CHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999985 55665554
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=372.30 Aligned_cols=211 Identities=39% Similarity=0.650 Sum_probs=185.7
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCC
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 502 (652)
.+|+++|++++|+++++|+++||+|.+|+++||||+||||||||||+|+|...|++|+|...+. +..+|+.|.. ...
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-~~v~~l~Q~~--~~~ 78 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-LRVGYLSQEP--PLD 78 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-ceEEEeCCCC--CcC
Confidence 4699999999999999999999999999999999999999999999999999999999998753 4567887764 455
Q ss_pred CCCCHHHHHHHhhhh-----------------------------------cc-HHHHHHHHhhCCCChhhhccCcCCCCH
Q 006275 503 LDKTVLETVAEAAED-----------------------------------WR-IDDIKGLLGRCNFKADMLDRKVSLLSG 546 (652)
Q Consensus 503 ~~~tv~e~~~~~~~~-----------------------------------~~-~~~~~~~L~~~~l~~~~~~~~~~~LSg 546 (652)
...||.+.+..+... |. ..++..+|..+|+... ++++.+|||
T Consensus 79 ~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG 156 (530)
T COG0488 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG 156 (530)
T ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence 667888877654210 11 1356778888999643 899999999
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChh
Q 006275 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (652)
Q Consensus 547 Gqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~ 626 (652)
|||.||+||+||+.+|++|||||||||||.++..+|.+.|.++.+|||+||||++|+..+|++|+.++.|++..|.|+|+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hHhhhcCCcccc
Q 006275 627 VCFTSFSPFLLV 638 (652)
Q Consensus 627 ~~~~~~~~~~~~ 638 (652)
.|.+..+....-
T Consensus 237 ~~~~~r~~~~~~ 248 (530)
T COG0488 237 SYLEQKAERLRQ 248 (530)
T ss_pred HHHHHHHHHHHH
Confidence 998877665533
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=331.09 Aligned_cols=190 Identities=35% Similarity=0.509 Sum_probs=163.1
Q ss_pred EEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------ccee
Q 006275 426 TIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (652)
Q Consensus 426 ~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (652)
+++|++++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999987 78999999999999999999999999999999999999999999999997652 1344
Q ss_pred cccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlL 567 (652)
+|... ...+..|+.+|+...... .....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~q~~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 81 FQNPD-DQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred ecChh-hhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44321 124568999998764321 1123567889999995 667899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCE
Q 006275 568 DEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSN 617 (652)
Q Consensus 568 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~ 617 (652)
||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999865 3599999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=330.88 Aligned_cols=189 Identities=28% Similarity=0.441 Sum_probs=160.6
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------ceEEE
Q 006275 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAF 165 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------~~i~~ 165 (652)
++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 4789999998889999999999999999999999999999999999999999999998753 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++..|++||+...... . ........+++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~ 121 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKY---------------K------------------------KLSKKEKREKKKEALEK 121 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHH
Confidence 99999887788999998532100 0 00011223456678888
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~ 322 (652)
+|+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||++||+++++ .+
T Consensus 122 ~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~ 199 (206)
T TIGR03608 122 VGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQ 199 (206)
T ss_pred cCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hh
Confidence 8985 567888999999999999999999999999999999999999999999988753 488999999999977 58
Q ss_pred cCeEEEE
Q 006275 323 CTKIVET 329 (652)
Q Consensus 323 ~d~ii~l 329 (652)
||+|++|
T Consensus 200 ~d~i~~l 206 (206)
T TIGR03608 200 ADRVIEL 206 (206)
T ss_pred cCEEEeC
Confidence 9999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=343.81 Aligned_cols=204 Identities=25% Similarity=0.345 Sum_probs=171.7
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------cc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~ 491 (652)
||+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 489999999998888999999999999999999999999999999999999999999999998752 12
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
|++|+.. ...+..++.+|+...... . ....+.++++.+++. +..++++.+||||||||++|||||+.+|+||
T Consensus 81 ~v~q~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~ll 158 (271)
T PRK13638 81 TVFQDPE-QQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158 (271)
T ss_pred EEeeChh-hccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 4444321 122345788888754211 1 123466789999984 6678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|++.. .|++++...
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 225 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT-HGAPGEVFA 225 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHhc
Confidence 999999999999999999999865 4599999999999999999999999999874 577766543
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=348.50 Aligned_cols=196 Identities=22% Similarity=0.328 Sum_probs=169.7
Q ss_pred eEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------cceecccccccCC
Q 006275 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQNQAEALD 502 (652)
Q Consensus 432 ~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~~~~~~~~~ 502 (652)
++|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++|. ..++
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~--~~~~ 78 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQY--ASVD 78 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCC--CCCC
Confidence 4688888999999999999999999999999999999999999999999999997752 2455554 3566
Q ss_pred CCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q 006275 503 LDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (652)
Q Consensus 503 ~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~ 576 (652)
+.+|+.+|+.+..... ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 7889999997643211 123577899999995 568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 577 PSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 577 ~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
.+++.+.++|+++ +.|||++||+++++.++||+|++|++|++. +.|++++..+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII-AEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHh
Confidence 9999999999865 469999999999999999999999999997 46887776543
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=340.92 Aligned_cols=211 Identities=23% Similarity=0.331 Sum_probs=172.3
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~--------- 160 (652)
.+.|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|..
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4579999999999988999999999999999999999999999999999999985 79999998732
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..++|++|++.+++ .|+++|+...+... . ..........
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--------------~------------------------~~~~~~~~~~ 139 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--------------K------------------------LVPRKEFRGV 139 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhc--------------c------------------------CCCHHHHHHH
Confidence 25999999988765 89999985321100 0 0001112233
Q ss_pred HHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.++++.+|+.. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .++|||+||
T Consensus 140 ~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivs 219 (276)
T PRK14271 140 AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219 (276)
T ss_pred HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 455667777742 235677899999999999999999999999999999999999999999888753 258999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+++++.++|||+++|++|++. ..|+.+++.
T Consensus 220 H~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 250 (276)
T PRK14271 220 HNLAQAARISDRAALFFDGRLV-EEGPTEQLF 250 (276)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999974 557766553
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=332.72 Aligned_cols=192 Identities=31% Similarity=0.496 Sum_probs=164.8
Q ss_pred EEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
+|+++||++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 3789999999974 57999999999999999999999999999999999999999999999997652
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhh--h----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHc
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~--~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~ 559 (652)
.+|++|+ ..+++..|+.+|+..... . .....+.++++.+|+. +..++++.+|||||||||+|||||+
T Consensus 81 ~~~~i~~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 81 RNKKLGFIYQF--HHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHhcEEEEecc--cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 1234443 345667899999976321 1 1123567899999995 5678999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.. ||++++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999754 4699999999999965 7999999999874
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=336.23 Aligned_cols=209 Identities=23% Similarity=0.319 Sum_probs=171.6
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCCC----------ceE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~---p~~G~i~~~~~~----------~~i 163 (652)
+++++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+ ..|
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4889999999998889999999999999999999999999999999999974 699999998743 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|++.++. .|++||+...... ..... +......++.+++
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~~-----------~~~~~--------------------------~~~~~~~~~~~~l 123 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPKL-----------HGMIK--------------------------NKDEEEALVVDCL 123 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHhh-----------cCccc--------------------------ChHHHHHHHHHHH
Confidence 99999988764 6999998532100 00000 0011233455677
Q ss_pred hhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHH
Q 006275 244 PELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAF 318 (652)
Q Consensus 244 ~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~ 318 (652)
+.+|+.+ ...++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++ .++|||+|||++++
T Consensus 124 ~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 203 (246)
T PRK14269 124 QKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203 (246)
T ss_pred HHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 7888742 235778899999999999999999999999999999999999999999888753 48899999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+..+||+|+++++|++. ..|+..++
T Consensus 204 ~~~~~d~i~~l~~G~i~-~~g~~~~~ 228 (246)
T PRK14269 204 GKRVADYTAFFHLGELI-EFGESKEF 228 (246)
T ss_pred HHhhCcEEEEEECCEEE-EECCHHHH
Confidence 99999999999999984 55665554
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=350.17 Aligned_cols=206 Identities=21% Similarity=0.340 Sum_probs=175.0
Q ss_pred EEEEEeeeeEeC----CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC----CCeeEEEECceecc------
Q 006275 424 VVTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK----PRGGEVLLGEHNVL------ 489 (652)
Q Consensus 424 ~i~~~~v~~~y~----~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~----p~~G~i~~~g~~~~------ 489 (652)
+|+++|+++.|+ ...+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 689999999993 4579999999999999999999999999999999999996 58999999998752
Q ss_pred --------cceecccccccCCCCCCHHHHHHHhhh------------hccHHHHHHHHhhCCCCh--hhhccCcCCCCHH
Q 006275 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE------------DWRIDDIKGLLGRCNFKA--DMLDRKVSLLSGG 547 (652)
Q Consensus 490 --------~~~~~~~~~~~~~~~~tv~e~~~~~~~------------~~~~~~~~~~L~~~~l~~--~~~~~~~~~LSgG 547 (652)
.++++|+....+++.+|+.+++..... ......+.++|+.+|+.. +..++++.+||||
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG 162 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEG 162 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 235666654446778899998865211 011245788999999963 3468999999999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecC
Q 006275 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAG 623 (652)
Q Consensus 548 qrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g 623 (652)
|||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.++||||++|++|+|++ .|
T Consensus 163 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive-~g 241 (330)
T PRK15093 163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE-TA 241 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EC
Confidence 999999999999999999999999999999999999998763 5699999999999999999999999999985 57
Q ss_pred ChhhHhh
Q 006275 624 DYNVCFT 630 (652)
Q Consensus 624 ~~~~~~~ 630 (652)
+.+++++
T Consensus 242 ~~~~i~~ 248 (330)
T PRK15093 242 PSKELVT 248 (330)
T ss_pred CHHHHHh
Confidence 7766543
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=335.80 Aligned_cols=203 Identities=22% Similarity=0.364 Sum_probs=174.4
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------cce
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNY 492 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~ 492 (652)
+++++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 689999999999889999999999999999999999999999999999999999999999997652 123
Q ss_pred ecccccccCCCCCCHHHHHHHhhhh-------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAED-------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~-------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
++|+ ..+++..|+.+|+...... .....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (241)
T PRK10895 83 LPQE--ASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFI 159 (241)
T ss_pred eccC--CcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4443 3456678999998764211 1123577889999984 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||||++||+.++..+.+.+.++ +.|||++|||++++..+||++++|++|++.. .|+++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 226 (241)
T PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA-HGTPTEILQ 226 (241)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe-eCCHHHHhc
Confidence 999999999999999999888754 5699999999999999999999999999974 688777653
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=334.91 Aligned_cols=206 Identities=32% Similarity=0.479 Sum_probs=173.9
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q~ 169 (652)
|+++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 478999999998889999999999999999999999999999999999999999999998643 359999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+++..|+.||+...... . ........+.+.++++.+++.
T Consensus 81 ~~~~~~~t~~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEI---------------R------------------------KHPKAKIKARVEELLELVQLE 121 (237)
T ss_pred hhhccCCcHHHHHHhHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCH
Confidence 9877778999998532100 0 000011223456778888885
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (652)
+..++.+.+|||||+||++|||||+.+|+++||||||+|||+.+++++.++|++ .++|||++||+++++.++||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 122 -GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred -hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 567888999999999999999999999999999999999999999999988753 378999999999999999999
Q ss_pred EEEEcCCeEEEecCChHHH
Q 006275 326 IVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 326 ii~l~~G~~~~~~g~~~~~ 344 (652)
++++++|++. ..|+.+++
T Consensus 201 i~~l~~g~i~-~~~~~~~~ 218 (237)
T TIGR00968 201 IVVMSNGKIE-QIGSPDEV 218 (237)
T ss_pred EEEEECCEEE-EecCHHHH
Confidence 9999999984 55665554
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=342.67 Aligned_cols=207 Identities=25% Similarity=0.390 Sum_probs=172.3
Q ss_pred CceEEEeEEEEeC--CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
.+|+++|+++.|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4699999999995 4579999999999999999999999999999999999999999999998743 259
Q ss_pred EEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
+|++|++. .++..|++||+....... ..........+.++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~---------------------------------------~~~~~~~~~~~~~~ 126 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENK---------------------------------------KVPPKKMKDIIDDL 126 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHc---------------------------------------CCCHHHHHHHHHHH
Confidence 99999974 456789999985321000 00111223456678
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~-g~tvIivsHd~~~ 318 (652)
++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ . +.|||++||++++
T Consensus 127 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 205 (271)
T PRK13632 127 AKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE 205 (271)
T ss_pred HHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH
Confidence 8888986 567889999999999999999999999999999999999999999999988753 3 5899999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+. .||++++|++|++. ..|+.+++
T Consensus 206 ~~-~~d~v~~l~~G~i~-~~g~~~~~ 229 (271)
T PRK13632 206 AI-LADKVIVFSEGKLI-AQGKPKEI 229 (271)
T ss_pred Hh-hCCEEEEEECCEEE-EecCHHHH
Confidence 95 79999999999984 55665544
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=337.01 Aligned_cols=210 Identities=20% Similarity=0.314 Sum_probs=168.2
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCC-----CcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-----~G~i~~~~~~----------- 160 (652)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 589999999999888999999999999999999999999999999999999874 8999998732
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..++|++|++.+++..|+.||+...+... .. . ......+.+
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~-~~---------------~----------------------~~~~~~~~~ 125 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLA-GI---------------R----------------------DRDHLMEVA 125 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhc-CC---------------C----------------------CHHHHHHHH
Confidence 25999999998877789999985322100 00 0 000011122
Q ss_pred HHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006275 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (652)
Q Consensus 240 ~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (652)
.+++..+++. ....++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .++|||++||
T Consensus 126 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 205 (252)
T PRK14272 126 ERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTH 205 (252)
T ss_pred HHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 2333333321 1345778899999999999999999999999999999999999999999988753 3689999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+++++..+||+|++|++|++. ..|+.+++.
T Consensus 206 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 235 (252)
T PRK14272 206 NMHQAARVSDTTSFFLVGDLV-EHGPTDQLF 235 (252)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999984 667765543
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=335.77 Aligned_cols=203 Identities=28% Similarity=0.388 Sum_probs=174.0
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-----GGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~~~--------- 489 (652)
+|+++||+++|+++.+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 478999999999888999999999999999999999999999999999999998 999999998753
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhhc-------cHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHHH
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAEDW-------RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.+|++|+ ..+++ .|+.+|+....... ....+.++++.+|+.. +..++++.+||||||||++|||
T Consensus 81 ~~~i~~v~q~--~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 81 RRRVGMVFQK--PNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HhheEEEecC--cccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence 1244443 34555 89999998643211 1235678899999852 4578899999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||+.+|++|||||||++||+.++..+.++|+++. .|||+||||++++..+||++++|++|++. ..|+.+++.+
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 232 (247)
T TIGR00972 158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV-EYGPTEQIFT 232 (247)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999999999999998753 59999999999999999999999999997 4577777654
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=333.07 Aligned_cols=194 Identities=28% Similarity=0.435 Sum_probs=166.9
Q ss_pred cEEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 423 SVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
++|+++||++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 47999999999974 57999999999999999999999999999999999999999999999997652
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhh------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.+|++|+ ..+++..|+.+|+..... ....+++.++++.+|+. +..++++.+||||||||++||||+
T Consensus 84 ~~~~~i~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 84 LRNQKLGFIYQF--HHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHhccEEEEecC--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHH
Confidence 1234443 345667899999976421 11124577899999995 567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+ |++++|++|+++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~ 225 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTA 225 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEE
Confidence 9999999999999999999999999999864 45999999999999874 7999999999864
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=356.13 Aligned_cols=204 Identities=24% Similarity=0.331 Sum_probs=174.5
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC----C--------------ce
Q 006275 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----N--------------MK 162 (652)
Q Consensus 101 ~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~----~--------------~~ 162 (652)
.++.+.|+...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. + .+
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 45677888888999999999999999999999999999999999999999999999873 1 25
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|+|++|++.+++..||+||+...+.. . .+...+...++.++
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~---------------~------------------------g~~~~~~~~~a~e~ 148 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEM---------------Q------------------------GMPEAERRKRVDEQ 148 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHH
Confidence 99999999998889999998632110 0 01111234466788
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~ 318 (652)
++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|. +.++|||+||||+++
T Consensus 149 le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e 227 (382)
T TIGR03415 149 LELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE 227 (382)
T ss_pred HHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 8999996 67899999999999999999999999999999999999999999999988764 248999999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+.++||||++|++|++. ..|+.+++.
T Consensus 228 ~~~l~DrI~vl~~G~iv-~~g~~~ei~ 253 (382)
T TIGR03415 228 ALKIGNRIAIMEGGRII-QHGTPEEIV 253 (382)
T ss_pred HHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999984 667766654
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=337.55 Aligned_cols=203 Identities=26% Similarity=0.358 Sum_probs=174.1
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------------
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------- 489 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------- 489 (652)
|+++||++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 47899999999889999999999999999999999999999999999999999999999997652
Q ss_pred --------cceecccccccCCCCCCHHHHHHHhhh-------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHH
Q 006275 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 --------~~~~~~~~~~~~~~~~tv~e~~~~~~~-------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~L 554 (652)
.++++| ...+++..|+.+|+..... ......+.++++.+|+. +..++.+.+||||||||++|
T Consensus 81 ~~~~~~~~i~~v~q--~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~l 157 (252)
T TIGR03005 81 HLRQMRNKIGMVFQ--SFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAI 157 (252)
T ss_pred HHHHHhhCeEEEec--CcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHH
Confidence 123333 3346667899999976421 11123577889999995 67789999999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+|||+++|++|++. ..|+++++..
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 236 (252)
T TIGR03005 158 ARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEIFR 236 (252)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHhc
Confidence 99999999999999999999999999999998764 469999999999999999999999999997 4577777654
Q ss_pred h
Q 006275 631 S 631 (652)
Q Consensus 631 ~ 631 (652)
.
T Consensus 237 ~ 237 (252)
T TIGR03005 237 Q 237 (252)
T ss_pred C
Confidence 3
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=342.54 Aligned_cols=205 Identities=27% Similarity=0.397 Sum_probs=175.1
Q ss_pred cEEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------
Q 006275 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (652)
++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 3799999999996 578999999999999999999999999999999999999999999999998752
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
.+|++|+... ..+..|+.+|+....... ....+..+++.+|+. ...++++.+||||||||++|||||+.+|+
T Consensus 84 ig~v~q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 84 VGMVFQDPDN-QLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred EEEEecCcch-hhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 1355554321 234579999997643211 123577889999995 67899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||||||++||+.++..+.++|+++ +.|||++|||++++..+|||+++|++|++. +.|++++...
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 231 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 231 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 99999999999999999999988754 469999999999999999999999999997 4687776544
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=340.80 Aligned_cols=210 Identities=19% Similarity=0.302 Sum_probs=171.0
Q ss_pred CCCCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC-------
Q 006275 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------- 160 (652)
Q Consensus 93 ~~~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~------- 160 (652)
...++|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 35 ~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 34567999999999988889999999999999999999999999999999999987 689999997642
Q ss_pred -----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcH
Q 006275 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (652)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (652)
..++|++|++.+++ .|+.||+...... .. .. ...
T Consensus 115 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~------------------------~~-~~~ 153 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFP-KSIYDNVAYGLKI---------------QG------------------------YD-GDI 153 (285)
T ss_pred hHhhhccEEEEecCCccCc-CCHHHHHHHHHHH---------------cC------------------------Cc-HHH
Confidence 25999999987765 4999998532100 00 00 011
Q ss_pred HHHHHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 006275 236 DAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (652)
Q Consensus 236 ~~~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvI 310 (652)
..++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||+|||+.+++++.++|++ .+.|||
T Consensus 154 ~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tii 233 (285)
T PRK14254 154 DERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVV 233 (285)
T ss_pred HHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 234556677777642 346788999999999999999999999999999999999999999999988754 257999
Q ss_pred EEecCHHHHHhhcCeEE-EEcCCeEEEecCChHHH
Q 006275 311 IISHDRAFLDQLCTKIV-ETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 311 ivsHd~~~l~~~~d~ii-~l~~G~~~~~~g~~~~~ 344 (652)
++||+++++..+|||++ ++++|++. ..|+..++
T Consensus 234 i~tH~~~~i~~~~dri~v~l~~G~i~-~~g~~~~~ 267 (285)
T PRK14254 234 IVTHNMQQAARISDKTAVFLTGGELV-EFDDTDKI 267 (285)
T ss_pred EEeCCHHHHHhhcCEEEEEeeCCEEE-EeCCHHHH
Confidence 99999999999999975 56999884 55765554
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=337.24 Aligned_cols=207 Identities=21% Similarity=0.305 Sum_probs=173.0
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee-----cc--------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----VL-------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-----~~-------- 489 (652)
++|+++||++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 46999999999988889999999999999999999999999999999999999999999999865 31
Q ss_pred ------cceecccccccCCCCCCHHHHHHHhhh-----h--ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHH
Q 006275 490 ------PNYFEQNQAEALDLDKTVLETVAEAAE-----D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 ------~~~~~~~~~~~~~~~~tv~e~~~~~~~-----~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.+++.|.....+.+..++.+|+..... . .....+.++++.+++.....++.+.+|||||||||+|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 133444322223455688888754211 0 113457788999999545678999999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||+.+|++|||||||++||+.+++.+.++|.+. +.|||+|||+++++..+||++++|++|++.. .|+.+++..
T Consensus 162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~-~~~~~~~~~ 238 (253)
T TIGR02323 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE-SGLTDQVLD 238 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-ECCHHHHhc
Confidence 999999999999999999999999999988753 5699999999999999999999999999974 577776654
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=338.26 Aligned_cols=203 Identities=30% Similarity=0.431 Sum_probs=174.4
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------ccee
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (652)
+|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 589999999999889999999999999999999999999999999999999999999999997642 1344
Q ss_pred cccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHc------cC
Q 006275 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV------KP 561 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~------~~ 561 (652)
+|+ ..+.+..|+.+|+...... .....+.++++.+++. ...++.+.+|||||||||+|||||+ .+
T Consensus 82 ~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~ 158 (258)
T PRK13548 82 PQH--SSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP 158 (258)
T ss_pred ccC--CcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 443 3455678999999764321 1123567889999994 6679999999999999999999999 59
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|++. ..|+++++.+
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 230 (258)
T PRK13548 159 PRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV-ADGTPAEVLT 230 (258)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE-eeCCHHHHhC
Confidence 9999999999999999999999998754 459999999999999999999999999987 4577766543
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=339.10 Aligned_cols=210 Identities=19% Similarity=0.274 Sum_probs=172.0
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~--------- 160 (652)
...|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 346999999999988889999999999999999999999999999999999986 589999988742
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..|+|++|++.+++ .|++||+...+... . .......+.
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~ 138 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFALERA---------------G-----------------------VKDKKVLDE 138 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhHHHhc---------------C-----------------------CCCHHHHHH
Confidence 25999999987755 69999985321100 0 000011233
Q ss_pred HHHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
++.++++.+++.. ...++++.+|||||+||++|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++
T Consensus 139 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~ 218 (267)
T PRK14237 139 IVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIV 218 (267)
T ss_pred HHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4456666767631 346788999999999999999999999999999999999999999999887753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||+++++..+||++++|++|++. ..|+..++
T Consensus 219 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 249 (267)
T PRK14237 219 THNMQQAARASDYTAFFYLGDLI-EYDKTRNI 249 (267)
T ss_pred ecCHHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999984 66776654
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=330.23 Aligned_cols=196 Identities=26% Similarity=0.373 Sum_probs=166.1
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q~ 169 (652)
++++|+++.|+. .+.++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 478999999974 5789999999999999999999999999999999999999999998743 359999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+++..|+.||+...+... . ......+.++.++++.+|+.
T Consensus 79 ~~~~~~~t~~en~~~~~~~~-------------~--------------------------~~~~~~~~~~~~~l~~~~l~ 119 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPG-------------L--------------------------KLNAEQQEKVVDAAQQVGIA 119 (213)
T ss_pred CccCCCCcHHHHHHhHhhcc-------------C--------------------------CccHHHHHHHHHHHHHcCcH
Confidence 98877889999985321100 0 00001133456778888985
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (652)
+..++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|||+++++..+||+
T Consensus 120 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 120 -DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred -HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 567888999999999999999999999999999999999999999999887743 478999999999999999999
Q ss_pred EEEEcCCeEE
Q 006275 326 IVETEMGVSR 335 (652)
Q Consensus 326 ii~l~~G~~~ 335 (652)
+++|++|++.
T Consensus 199 v~~l~~g~i~ 208 (213)
T TIGR01277 199 IAVVSQGKIK 208 (213)
T ss_pred EEEEECCeEE
Confidence 9999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=336.22 Aligned_cols=209 Identities=19% Similarity=0.255 Sum_probs=170.4
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~---------- 160 (652)
++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 469999999999888899999999999999999999999999999999999875 79999998743
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..++|++|++.++. .|+++|+...... ... ........+
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~ 123 (251)
T PRK14270 83 LRKRVGMVFQKPNPFP-MSIYDNVAYGPRI---------------HGI-----------------------KDKKELDKI 123 (251)
T ss_pred HHhheEEEecCCCcCC-CcHHHHHHhHHHh---------------cCC-----------------------CcHHHHHHH
Confidence 24999999988765 8999998522100 000 000011233
Q ss_pred HHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.++++.+|+. ....++++.+||||||||++|||||+.+|+||||||||+|||+.++.++.++|++ .+.|||+||
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivs 203 (251)
T PRK14270 124 VEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVT 203 (251)
T ss_pred HHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 44566666663 1345778899999999999999999999999999999999999999999888753 268999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|+++++..+|||++++++|++. ..|+.++.
T Consensus 204 H~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (251)
T PRK14270 204 HNMQQASRVSDYTAFFLMGDLI-EFNKTEKI 233 (251)
T ss_pred cCHHHHHHhcCEEEEEECCeEE-EeCCHHHH
Confidence 9999999999999999999984 55665554
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=335.45 Aligned_cols=202 Identities=28% Similarity=0.392 Sum_probs=170.6
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEECceecc-----------cc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEVLLGEHNVL-----------PN 491 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~--~p~~G~i~~~g~~~~-----------~~ 491 (652)
|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. .+
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 47899999999889999999999999999999999999999999999995 799999999997642 12
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh---------cc----HHHHHHHHhhCCCChhhhccCcC-CCCHHHHHHHHHHHH
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED---------WR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAFCKF 557 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~---------~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqrqrv~LAra 557 (652)
|++| ...+++..|+.+++...... .. ...+.++++.+++.....++++. +|||||||||+||||
T Consensus 81 ~v~q--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 81 LAFQ--YPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred eeec--cccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 3333 33456778999998653211 01 23467889999996456678887 599999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-ccEEEEEeCCEEEeecCChhhHh
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
|+.+|++|||||||++||+.+++.+.++|+++ +.|||+||||++++..+ ||++++|++|++. ..|+++++.
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELAK 233 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHhc
Confidence 99999999999999999999999999999876 46999999999999998 8999999999997 467777554
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=337.48 Aligned_cols=199 Identities=27% Similarity=0.383 Sum_probs=166.5
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCC
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~ 175 (652)
++|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++.++..
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-LRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-cCEEEeccccccccc
Confidence 3699999999999888999999999999999999999999999999999999999999999863 479999999866544
Q ss_pred --CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccc
Q 006275 176 --RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (652)
Q Consensus 176 --~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~ 253 (652)
.|+.+++... . .....++.++++.+|+. +..
T Consensus 82 l~~~~~~~~~~~--~--------------------------------------------~~~~~~~~~~l~~~gl~-~~~ 114 (251)
T PRK09544 82 LPLTVNRFLRLR--P--------------------------------------------GTKKEDILPALKRVQAG-HLI 114 (251)
T ss_pred cChhHHHHHhcc--c--------------------------------------------cccHHHHHHHHHHcCCh-HHH
Confidence 3555553210 0 00012345667778885 567
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEE
Q 006275 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVET 329 (652)
Q Consensus 254 ~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ii~l 329 (652)
++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||+|||+++++..+||+|++|
T Consensus 115 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 115 DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 888999999999999999999999999999999999999999999888742 3899999999999999999999999
Q ss_pred cCCeEEEecCChHHH
Q 006275 330 EMGVSRTYEGNYSQY 344 (652)
Q Consensus 330 ~~G~~~~~~g~~~~~ 344 (652)
++ ++ ...|+.+++
T Consensus 195 ~~-~i-~~~g~~~~~ 207 (251)
T PRK09544 195 NH-HI-CCSGTPEVV 207 (251)
T ss_pred CC-ce-EeeCCHHHH
Confidence 75 54 466776554
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=331.45 Aligned_cols=194 Identities=28% Similarity=0.406 Sum_probs=166.7
Q ss_pred cEEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 423 SVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
++|+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 47999999999975 36999999999999999999999999999999999999999999999997652
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhh------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.+|++|+ ..+++..|+.+|+..... ....+++.++++.+++. +..++++.+||||||||++|||||
T Consensus 85 ~~~~~i~~~~q~--~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 85 LRAKHVGFVFQS--FMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHhheEEEEEcc--cccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHH
Confidence 1233433 346667899999875421 11234578899999995 667899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
+.+|++|||||||+|||+.+++.+.+.|+++ +.|||++|||++++.. ||++++|++|++.+
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 9999999999999999999999999999754 4699999999999865 99999999999863
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=338.05 Aligned_cols=202 Identities=29% Similarity=0.449 Sum_probs=173.9
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------ccee
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (652)
+|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 589999999999889999999999999999999999999999999999999999999999997642 2344
Q ss_pred cccccccCCCCCCHHHHHHHhhh----------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 494 EQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
+|+ ..+.+..|+.+|+..... ......+.++++.+++. ...++++.+|||||||||+||||++.+|+
T Consensus 82 ~q~--~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ 158 (255)
T PRK11231 82 PQH--HLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTP 158 (255)
T ss_pred ccc--CCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 444 235566799999876421 01123567889999994 56899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+|||||||+|||+.++..+.+.|+++ +.|||++|||++++.++||++++|++|++. ..|+++++.
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 226 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM-AQGTPEEVM 226 (255)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE-EEcCHHHhc
Confidence 99999999999999999999999764 469999999999999999999999999987 457766653
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=335.90 Aligned_cols=208 Identities=22% Similarity=0.286 Sum_probs=169.7
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~----------- 160 (652)
+|+++|+++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 68999999999888899999999999999999999999999999999999874 89999998732
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..++|++|++.++. .|+++|+....... .. ......+..+
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---------------~~-----------------------~~~~~~~~~~ 123 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIH---------------GV-----------------------KSKHKLDRIV 123 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHc---------------CC-----------------------CcHHHHHHHH
Confidence 25999999987765 89999985321100 00 0000112234
Q ss_pred HHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006275 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (652)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (652)
.++++.+|+.. ...++.+.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++||
T Consensus 124 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH 203 (250)
T PRK14262 124 EESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 45566666632 236788999999999999999999999999999999999999999999988753 3689999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+++++..+||+|+++++|++. ..|+.+++
T Consensus 204 ~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 232 (250)
T PRK14262 204 NIGQAIRIADYIAFMYRGELI-EYGPTREI 232 (250)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 999999999999999999984 56765554
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=352.99 Aligned_cols=198 Identities=26% Similarity=0.392 Sum_probs=168.4
Q ss_pred eEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------ceEEEEe
Q 006275 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLS 167 (652)
Q Consensus 102 ~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------~~i~~v~ 167 (652)
|++++|++..+ ++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 89999987664 8999999999999999999999999999999999999999987632 2499999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|++.+++.+||+||+...+.. ........++.++++.+|
T Consensus 82 q~~~l~~~~tv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~g 120 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKR-----------------------------------------ARPSERRISFERVIELLG 120 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhc-----------------------------------------cChhHHHHHHHHHHHHcC
Confidence 999888889999998532110 000112345667888899
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~ 323 (652)
+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||+||||++++..+|
T Consensus 121 L~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~ 199 (354)
T TIGR02142 121 IG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199 (354)
T ss_pred Ch-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 96 578899999999999999999999999999999999999999999999887743 4899999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|+|++|++|++. ..|+.+++
T Consensus 200 d~i~~l~~G~i~-~~g~~~~~ 219 (354)
T TIGR02142 200 DRVVVLEDGRVA-AAGPIAEV 219 (354)
T ss_pred CEEEEEeCCEEE-EECCHHHH
Confidence 999999999984 56765543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=329.95 Aligned_cols=189 Identities=31% Similarity=0.458 Sum_probs=161.9
Q ss_pred eEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------ceEEEEe
Q 006275 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLS 167 (652)
Q Consensus 102 ~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------~~i~~v~ 167 (652)
|++|+|+++.+ |+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 81 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEe
Confidence 99999998766 99999999 9999999999999999999999999999999998732 2599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|++.+++..|+.+|+...... ......+.++.++++.+|
T Consensus 82 q~~~~~~~~t~~~~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~ 120 (214)
T cd03297 82 QQYALFPHLNVRENLAFGLKR-----------------------------------------KRNREDRISVDELLDLLG 120 (214)
T ss_pred cCCccCCCCCHHHHHHHHHhh-----------------------------------------CCHHHHHHHHHHHHHHcC
Confidence 999887788999998522100 000011234567788888
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~ 323 (652)
+. ...++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||++||+++++..+|
T Consensus 121 l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~ 199 (214)
T cd03297 121 LD-HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLA 199 (214)
T ss_pred CH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhc
Confidence 86 567888999999999999999999999999999999999999999999888743 3889999999999999999
Q ss_pred CeEEEEcCCeEE
Q 006275 324 TKIVETEMGVSR 335 (652)
Q Consensus 324 d~ii~l~~G~~~ 335 (652)
|+++++++|++.
T Consensus 200 d~i~~l~~G~i~ 211 (214)
T cd03297 200 DRIVVMEDGRLQ 211 (214)
T ss_pred CEEEEEECCEEE
Confidence 999999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=348.24 Aligned_cols=206 Identities=22% Similarity=0.323 Sum_probs=175.0
Q ss_pred EEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC----CCeeEEEECceecc------
Q 006275 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK----PRGGEVLLGEHNVL------ 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~----p~~G~i~~~g~~~~------ 489 (652)
+|+++|+++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999975 469999999999999999999999999999999999997 48999999998752
Q ss_pred --------cceecccccccCCCCCCHHHHHHHhhh-------hccHHHHHHHHhhCCCCh--hhhccCcCCCCHHHHHHH
Q 006275 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCNFKA--DMLDRKVSLLSGGEKARL 552 (652)
Q Consensus 490 --------~~~~~~~~~~~~~~~~tv~e~~~~~~~-------~~~~~~~~~~L~~~~l~~--~~~~~~~~~LSgGqrqrv 552 (652)
.++++|+....+++.+++.+++..... ....+.+.++|+.+|+.. ...++++.+|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 245566544456778888877654321 112345788999999953 456899999999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 553 ~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
+|||||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++.+.++||||++|++|+|++ .|+.++.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive-~g~~~~~ 241 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE-TGKAHDI 241 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999999999999988764 4699999999999999999999999999985 4776665
Q ss_pred hh
Q 006275 629 FT 630 (652)
Q Consensus 629 ~~ 630 (652)
++
T Consensus 242 ~~ 243 (326)
T PRK11022 242 FR 243 (326)
T ss_pred hh
Confidence 43
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=342.38 Aligned_cols=208 Identities=23% Similarity=0.360 Sum_probs=174.3
Q ss_pred CceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCC---cEEEECCCC----------
Q 006275 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---GNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~---G~i~~~~~~---------- 160 (652)
.+|+++|+++.|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++ |+|.++|..
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 46999999999965 469999999999999999999999999999999999999987 899998743
Q ss_pred ceEEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 ~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..|||++|++. .++..||+||+....... .....+..+++
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---------------------------------------~~~~~~~~~~~ 124 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENR---------------------------------------AVPRPEMIKIV 124 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhC---------------------------------------CCCHHHHHHHH
Confidence 25999999985 456789999985211000 01112234456
Q ss_pred HHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006275 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (652)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (652)
.++++.+|+. +..++++.+|||||+|||+|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||++||+
T Consensus 125 ~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 125 RDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred HHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 7788899996 578899999999999999999999999999999999999999999999888743 48999999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
++++ ..||++++|++|++. ..|+.+++.
T Consensus 204 ~~~~-~~~d~i~~l~~G~i~-~~g~~~~~~ 231 (282)
T PRK13640 204 IDEA-NMADQVLVLDDGKLL-AQGSPVEIF 231 (282)
T ss_pred HHHH-HhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999 579999999999984 667766553
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=339.47 Aligned_cols=208 Identities=26% Similarity=0.395 Sum_probs=172.1
Q ss_pred ceEEEeEEEEeC---------CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------
Q 006275 97 GVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~---------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------- 160 (652)
+|+++|++|.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 589999999997 3679999999999999999999999999999999999999999999998752
Q ss_pred ------ceEEEEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCCh
Q 006275 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (652)
Q Consensus 161 ------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (652)
..++|++|++. +.+..|+.+|+...... +. ..+.
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~--------------~~------------------------~~~~ 124 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH--------------LL------------------------SLDK 124 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh--------------hc------------------------cCCH
Confidence 25999999973 44567999887421100 00 0001
Q ss_pred hcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCe
Q 006275 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVP 308 (652)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~t 308 (652)
.....++.++++.+|+.+...++.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .+.|
T Consensus 125 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~t 204 (268)
T PRK10419 125 AERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTA 204 (268)
T ss_pred HHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcE
Confidence 112335667888889865567889999999999999999999999999999999999999999988887642 4889
Q ss_pred EEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHH
Q 006275 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 309 vIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~ 343 (652)
||++||+++++..+||++++|++|++. ..|+.++
T Consensus 205 iiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~ 238 (268)
T PRK10419 205 CLFITHDLRLVERFCQRVMVMDNGQIV-ETQPVGD 238 (268)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEe-eeCChhh
Confidence 999999999999999999999999874 5565444
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=335.76 Aligned_cols=208 Identities=19% Similarity=0.296 Sum_probs=168.3
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~----------- 160 (652)
.|+++|+++.|+++++|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 58999999999988899999999999999999999999999999999999986 59999998732
Q ss_pred ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHH
Q 006275 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (652)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (652)
..++|++|++.++. .|+.||+....... .. .......+++.
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~~---------------~~-----------------------~~~~~~~~~~~ 123 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGLRAQ---------------GI-----------------------KDKKVLDEVVE 123 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHHHhc---------------CC-----------------------CchHHHHHHHH
Confidence 24999999988765 89999985321100 00 00001122334
Q ss_pred HHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecC
Q 006275 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (652)
Q Consensus 241 ~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd 315 (652)
++++.+|+.. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++||+
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 203 (249)
T PRK14253 124 RSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHS 203 (249)
T ss_pred HHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4555555532 345778899999999999999999999999999999999999999999888753 36899999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
++++..+||++++|++|++. ..|+.+++
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 231 (249)
T PRK14253 204 MQQARRISDRTAFFLMGELV-EHDDTQVI 231 (249)
T ss_pred HHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999984 55665543
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=341.55 Aligned_cols=205 Identities=27% Similarity=0.361 Sum_probs=171.8
Q ss_pred EEEEEeeeeEeCC-----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 3899999999974 36999999999999999999999999999999999999999999999997652
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhhh--cc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.+|++|+....+ +..|+.+|+.+.... .. ...+.++++.+++.....++++.+||||||||++|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQL-FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhh-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 134454421123 346999999764321 11 223567889999964567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+.+|++|||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|++.. .|++++..+
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 234 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL-SGKPKDIFQ 234 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999999999998865 4699999999999999999999999999974 577766543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=319.86 Aligned_cols=210 Identities=27% Similarity=0.438 Sum_probs=172.3
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-----------eEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~-----------~i~ 164 (652)
++++++|++..|+...+|++|||++++||+++|+|+||+||||||++|+|+.++.+|+|.++|.+. .|+
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 469999999999999999999999999999999999999999999999999999999999998643 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
||||.-.+++.+||.||+..+....... ..... + + +.+-++..
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~------------~~~~~-~-~-----------------------e~v~~lFP 124 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDK------------EAQER-D-L-----------------------EEVYELFP 124 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccc------------ccccc-c-H-----------------------HHHHHHCh
Confidence 9999999999999999986432110000 00000 0 0 01111111
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHH
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~ 320 (652)
.+ .+..+++..+|||||||.++|||||+.+|++|||||||.||-|.-.+.+.+.++ +.|.||++|.++..++.
T Consensus 125 ~L---ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al 201 (237)
T COG0410 125 RL---KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFAL 201 (237)
T ss_pred hH---HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHH
Confidence 11 145677789999999999999999999999999999999999999999887763 34779999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
+++||.++|++|++ ++.|+.+++..
T Consensus 202 ~iaDr~yvle~Gri-v~~G~~~eL~~ 226 (237)
T COG0410 202 EIADRGYVLENGRI-VLSGTAAELLA 226 (237)
T ss_pred HhhCEEEEEeCCEE-EEecCHHHHhc
Confidence 99999999999998 58898766543
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=346.87 Aligned_cols=210 Identities=22% Similarity=0.345 Sum_probs=177.4
Q ss_pred CCCcEEEEEeeeeEeC----CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEECceecc---
Q 006275 420 SGRSVVTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHNVL--- 489 (652)
Q Consensus 420 ~~~~~i~~~~v~~~y~----~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~--- 489 (652)
..+++|+++|+++.|+ ...+++|+||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|.++.
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 4456899999999995 357999999999999999999999999999999999999996 999999998752
Q ss_pred -----------cceecccccccCCCCCCHHHHHHHhhhh---c----cHHHHHHHHhhCCCCh--hhhccCcCCCCHHHH
Q 006275 490 -----------PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFKA--DMLDRKVSLLSGGEK 549 (652)
Q Consensus 490 -----------~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~----~~~~~~~~L~~~~l~~--~~~~~~~~~LSgGqr 549 (652)
.++++|+....+++.+++.+++...... . ....+.++|+.+++.. ...++++.+||||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 2355666544677889999888653211 1 1245778899999863 235789999999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCCh
Q 006275 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625 (652)
Q Consensus 550 qrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~ 625 (652)
|||+|||||+.+|+|||+||||++||+.++..+.++|+++ +.|+|+||||++.+.++||||++|++|+|++ .|+.
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive-~g~~ 246 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME-YGNA 246 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCH
Confidence 9999999999999999999999999999999999988754 5699999999999999999999999999985 5777
Q ss_pred hhHhh
Q 006275 626 NVCFT 630 (652)
Q Consensus 626 ~~~~~ 630 (652)
+++++
T Consensus 247 ~~i~~ 251 (330)
T PRK09473 247 RDVFY 251 (330)
T ss_pred HHHHh
Confidence 76653
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=332.91 Aligned_cols=201 Identities=24% Similarity=0.359 Sum_probs=169.7
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------ccee
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYF 493 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~~ 493 (652)
|+++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 47899999999889999999999999999999999999999999999999999999999997652 1244
Q ss_pred cccccccCCCCCCHHHHHHHhhhhc---cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 494 EQNQAEALDLDKTVLETVAEAAEDW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
+|. ..+++..|+.+|+....... ......++++.++......++++.+||||||||++|||||+.+|++||||||
T Consensus 81 ~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 81 PQG--REIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred ccC--CcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 443 34566789999997653221 1223466677776324567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
|++||+.++..+.++|.+. +.|||+||||++++..+||+++++++|++.. .|+.++.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~-~~~~~~~ 219 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA-SGAGDEL 219 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHc
Confidence 9999999999999999864 4699999999999999999999999999974 5666543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=335.08 Aligned_cols=209 Identities=19% Similarity=0.278 Sum_probs=167.5
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCC-----CcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-----~G~i~~~~~~---------- 160 (652)
+.|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 3589999999998888999999999999999999999999999999999999997 6999987632
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..++|++|++.+++ .|+.||+....... .. ......+..
T Consensus 83 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~~-----------------------~~~~~~~~~ 123 (251)
T PRK14249 83 LRKRVGMVFQQPNPFP-KSIFDNVAFGPRML---------------GT-----------------------TAQSRLDEV 123 (251)
T ss_pred hhceEEEEecCCccCc-CcHHHHHhhHHHhc---------------CC-----------------------ChhhHHHHH
Confidence 25999999998765 59999985321000 00 000001122
Q ss_pred HHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.+++..+|+. ....++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||+||
T Consensus 124 ~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivs 203 (251)
T PRK14249 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVT 203 (251)
T ss_pred HHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 33334444442 1345778999999999999999999999999999999999999999999888753 478999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|+++++..+||++++|++|++. ..|+.++.
T Consensus 204 h~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 233 (251)
T PRK14249 204 HNMQQAARASDWTGFLLTGDLV-EYGRTGEI 233 (251)
T ss_pred CCHHHHHhhCCEEEEEeCCeEE-EeCCHHHH
Confidence 9999999999999999999984 55665554
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=340.22 Aligned_cols=208 Identities=24% Similarity=0.402 Sum_probs=172.7
Q ss_pred CceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.. ..+
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 46999999999975 359999999999999999999999999999999999999999999998743 259
Q ss_pred EEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
+|++|++. .++..|+.+|+....... ..........+.++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~ 126 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENH---------------------------------------AVPYDEMHRRVSEA 126 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhc---------------------------------------CCCHHHHHHHHHHH
Confidence 99999985 556778988874221000 00011123345677
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (652)
++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||+|||++++
T Consensus 127 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~ 205 (269)
T PRK13648 127 LKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE 205 (269)
T ss_pred HHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH
Confidence 8888886 567888999999999999999999999999999999999999999999888753 48899999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+.. ||+|++|++|++. +.|+.+++.
T Consensus 206 ~~~-~d~i~~l~~G~i~-~~g~~~~~~ 230 (269)
T PRK13648 206 AME-ADHVIVMNKGTVY-KEGTPTEIF 230 (269)
T ss_pred Hhc-CCEEEEEECCEEE-EecCHHHHh
Confidence 975 9999999999984 567765543
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=342.04 Aligned_cols=204 Identities=28% Similarity=0.421 Sum_probs=173.8
Q ss_pred EEEEEeeeeEeCC---eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------c
Q 006275 424 VVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (652)
Q Consensus 424 ~i~~~~v~~~y~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (652)
+|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 6999999999963 46999999999999999999999999999999999999999999999998762 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+|++|+.. ...+..|+.+|+.+.... .....+.++++.+|+. +..++++.+||||||||++|||||+.+|++
T Consensus 84 ~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 84 GMVFQNPD-NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred eEEEcChH-HhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 35555431 234568999999865321 1124578899999995 678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||||||++||+.++..+.++|+++ +.|||+||||++++. +|||+++|++|++.. .|++++....
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~-~g~~~~~~~~ 230 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVES-TSTPRELFSR 230 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHcC
Confidence 9999999999999999999998754 469999999999995 799999999999974 5777765443
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=342.16 Aligned_cols=208 Identities=22% Similarity=0.323 Sum_probs=172.7
Q ss_pred CceEEEeEEEEeCC------eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------
Q 006275 96 SGVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------- 160 (652)
.+|+++|++++|++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 36999999999963 469999999999999999999999999999999999999999999998732
Q ss_pred --ceEEEEeccCcc-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 --MKIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 --~~i~~v~Q~~~~-~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..++|++|++.. .+..|+.+|+...... ..........
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~---------------------------------------~~~~~~~~~~ 123 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPEN---------------------------------------LGIPPEEIRE 123 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhh---------------------------------------cCCCHHHHHH
Confidence 248999999742 2346898887522100 0011112344
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivs 313 (652)
.+.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|.|||++|
T Consensus 124 ~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvt 202 (280)
T PRK13633 124 RVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILIT 202 (280)
T ss_pred HHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 567788899996 678899999999999999999999999999999999999999999999888743 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+++++.. ||+++++++|++. ..|+.+++.
T Consensus 203 H~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~~ 232 (280)
T PRK13633 203 HYMEEAVE-ADRIIVMDSGKVV-MEGTPKEIF 232 (280)
T ss_pred cChHHHhc-CCEEEEEECCEEE-EecCHHHHh
Confidence 99999976 9999999999974 667766654
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=337.70 Aligned_cols=202 Identities=25% Similarity=0.403 Sum_probs=174.7
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEECceecc----------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHNVL---------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~---------- 489 (652)
++|+++||++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 4799999999999889999999999999999999999999999999999999886 499999997652
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhh--------------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKA 550 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrq 550 (652)
.+|++|+ ..+++..|+.+|+..... ......+.++++.+++. ...++++.+|||||||
T Consensus 83 ~~~~~i~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~q 159 (262)
T PRK09984 83 KSRANTGYIFQQ--FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSGGQQQ 159 (262)
T ss_pred HHHhheEEEccc--cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCHHHHH
Confidence 1344443 345667899999975421 01123578899999994 6789999999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChh
Q 006275 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (652)
Q Consensus 551 rv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~ 626 (652)
||+|||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++. +.|+++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~~ 238 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQ 238 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHH
Confidence 999999999999999999999999999999999999865 469999999999999999999999999996 568877
Q ss_pred hH
Q 006275 627 VC 628 (652)
Q Consensus 627 ~~ 628 (652)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 65
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=338.28 Aligned_cols=204 Identities=28% Similarity=0.390 Sum_probs=175.7
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cc
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (652)
..+|+++|++++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 45699999999999889999999999999999999999999999999999999999999999997652 23
Q ss_pred eecccccccCCCCCCHHHHHHHhh-h---------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccC
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAA-E---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~-~---------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~ 561 (652)
|++|+ ..+++..|+.+|+.... . ......+.++++.+++. +..++++.+||||||||++|||||+.+
T Consensus 85 ~v~q~--~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 85 LLAQN--ATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred Eeecc--CcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 44544 34556789999987631 1 11123567889999994 678999999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++. ..|++++..
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 232 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV-AQGAPKEIV 232 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999998764 459999999999999999999999999987 457776654
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=330.30 Aligned_cols=195 Identities=27% Similarity=0.392 Sum_probs=163.1
Q ss_pred ceEEEeEEEEeCC-------eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC--CC--C-----
Q 006275 97 GVKLENISKSYKG-------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA--KS--N----- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~-------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~--~~--~----- 160 (652)
+|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 3789999999962 469999999999999999999999999999999999999999999997 31 1
Q ss_pred ---------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCC
Q 006275 161 ---------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (652)
Q Consensus 161 ---------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (652)
..++|++|++.+++..|+.||+...+.. . ...
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~--------------~-------------------------~~~ 121 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE--------------R-------------------------GVP 121 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHH--------------c-------------------------CCC
Confidence 2599999999888888999998532100 0 000
Q ss_pred hhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCe
Q 006275 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (652)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~t 308 (652)
.....+++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|
T Consensus 122 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 201 (224)
T TIGR02324 122 REAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAA 201 (224)
T ss_pred HHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 1112345567788889864455788999999999999999999999999999999999999999999888753 5889
Q ss_pred EEEEecCHHHHHhhcCeEEEEc
Q 006275 309 MVIISHDRAFLDQLCTKIVETE 330 (652)
Q Consensus 309 vIivsHd~~~l~~~~d~ii~l~ 330 (652)
||+|||+.+++..+||+++.+.
T Consensus 202 ii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 202 LIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred EEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=370.71 Aligned_cols=213 Identities=34% Similarity=0.526 Sum_probs=181.5
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccC-ccC
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF-EVS 173 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~-~~~ 173 (652)
..+|+++|++++|+++++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++ ...+|||++|++ .++
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i~~v~q~~~~~~ 400 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETVKLAYVDQSRDALD 400 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CceEEEEEeCchhhcC
Confidence 357999999999998889999999999999999999999999999999999999999999985 455899999996 566
Q ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccc
Q 006275 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (652)
Q Consensus 174 ~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~ 253 (652)
+..|++||+....... . ... ....+..+++.+|+.....
T Consensus 401 ~~~tv~e~l~~~~~~~--------------~-------------------------~~~--~~~~~~~~l~~~~l~~~~~ 439 (556)
T PRK11819 401 PNKTVWEEISGGLDII--------------K-------------------------VGN--REIPSRAYVGRFNFKGGDQ 439 (556)
T ss_pred CCCCHHHHHHhhcccc--------------c-------------------------ccc--cHHHHHHHHHhCCCChhHh
Confidence 7789999985321000 0 000 0112345788889864457
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC-C
Q 006275 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM-G 332 (652)
Q Consensus 254 ~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~-G 332 (652)
++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++.+.|||+||||++++..+||+|+++++ |
T Consensus 440 ~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g 519 (556)
T PRK11819 440 QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDS 519 (556)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCC
Confidence 889999999999999999999999999999999999999999999999987766999999999999999999999986 7
Q ss_pred eEEEecCChHHHHHHHH
Q 006275 333 VSRTYEGNYSQYVLEKA 349 (652)
Q Consensus 333 ~~~~~~g~~~~~~~~~~ 349 (652)
.+..+.|+|++|...+.
T Consensus 520 ~~~~~~g~~~~~~~~~~ 536 (556)
T PRK11819 520 QVEWFEGNFQEYEEDKK 536 (556)
T ss_pred eEEEecCCHHHHHHHHH
Confidence 87778999998876543
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=339.92 Aligned_cols=205 Identities=27% Similarity=0.402 Sum_probs=174.3
Q ss_pred cEEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cc
Q 006275 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (652)
Q Consensus 423 ~~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (652)
.+++++|++++|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 3689999999996 457999999999999999999999999999999999999999999999998653 23
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh--cc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
|++|+... ..+..|+.+|+...... .. ...+.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 82 ~v~q~~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 82 LVFQNPDD-QIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred EEecCccc-ccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 44444321 23467999999754321 11 23467889999995 6789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||||++||+.++..+.++|++. +.|||++|||++++.++|||+++|++|++. +.|+++++.+
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 227 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV-AYGTVEEIFL 227 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-EECCHHHHhc
Confidence 999999999999999999998753 569999999999999999999999999997 4688877654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=377.27 Aligned_cols=207 Identities=30% Similarity=0.497 Sum_probs=178.1
Q ss_pred CCCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccC--c
Q 006275 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF--E 171 (652)
Q Consensus 94 ~~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~--~ 171 (652)
...+|+++|++++|+++++|+|+||+|++|+++||+|||||||||||++|+|+++|++|+|.+++ ..+|||++|++ .
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q~~~~~ 387 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQHQLEF 387 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecCcchhh
Confidence 34579999999999988899999999999999999999999999999999999999999999863 35799999974 2
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcc
Q 006275 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (652)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (652)
+....|+.+++... ........+.+++..+|+...
T Consensus 388 l~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~L~~~~l~~~ 422 (638)
T PRK10636 388 LRADESPLQHLARL---------------------------------------------APQELEQKLRDYLGGFGFQGD 422 (638)
T ss_pred CCccchHHHHHHHh---------------------------------------------CchhhHHHHHHHHHHcCCChh
Confidence 33344555543210 000113456678889999655
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006275 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (652)
Q Consensus 252 ~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~ 331 (652)
..++++.+|||||||||+|||+|+.+|+||||||||||||+.++..|.++|++.+.|||+||||++++..+||+|+++++
T Consensus 423 ~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~ 502 (638)
T PRK10636 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHD 502 (638)
T ss_pred HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 67899999999999999999999999999999999999999999999999988778999999999999999999999999
Q ss_pred CeEEEecCChHHHHH
Q 006275 332 GVSRTYEGNYSQYVL 346 (652)
Q Consensus 332 G~~~~~~g~~~~~~~ 346 (652)
|++..+.|+|++|..
T Consensus 503 G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 503 GKVEPFDGDLEDYQQ 517 (638)
T ss_pred CEEEEcCCCHHHHHH
Confidence 998779999999853
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=332.44 Aligned_cols=202 Identities=27% Similarity=0.447 Sum_probs=172.9
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++||+++|++.. .++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 478999999997643 4999999999999999999999999999999999999999999998652 234444
Q ss_pred cccccCCCCCCHHHHHHHhhh------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
. ..+++..|+.+|+..... .....++.++++.+|+. ...++++.+||||||||++||||++.+|++|||||
T Consensus 79 ~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 155 (232)
T PRK10771 79 E--NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155 (232)
T ss_pred c--cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3 346667899999975321 11234578899999994 67899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||++||+.++..+.++|.+. +.|||+||||++++..+||++++|++|++. +.|+++++.+.
T Consensus 156 P~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~~ 220 (232)
T PRK10771 156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLSG 220 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHhC
Confidence 99999999999999988754 459999999999999999999999999997 56888777643
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=338.03 Aligned_cols=196 Identities=20% Similarity=0.315 Sum_probs=160.7
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~--------- 160 (652)
..+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 346999999999998889999999999999999999999999999999999987 689999998742
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..++|++|++.+++ .|++||+....... . .. ...++
T Consensus 91 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---------------~------------------------~~-~~~~~ 129 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFP-KSIYENIAFGARIN---------------G------------------------YT-GDMDE 129 (269)
T ss_pred HHhhceEEEccCCccch-hhHHHHHhhhhhhc---------------C------------------------Cc-HHHHH
Confidence 25999999987765 59999985321000 0 00 00112
Q ss_pred HHHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
.+.++++.+++. ....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++
T Consensus 130 ~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiiv 209 (269)
T PRK14259 130 LVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIV 209 (269)
T ss_pred HHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 233444555442 1346778899999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcC
Q 006275 313 SHDRAFLDQLCTKIVETEM 331 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~ 331 (652)
||+++++..+||++++|++
T Consensus 210 tH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 210 THNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred eCCHHHHHHhcCEEEEEec
Confidence 9999999999999999997
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=326.66 Aligned_cols=190 Identities=23% Similarity=0.339 Sum_probs=163.5
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEe
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~ 167 (652)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 3789999999998889999999999999999999999999999999999999999999998743 2599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|++.+++..|+.||+...... .. .....++.++++.+|
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~-----------------------------------------~~-~~~~~~~~~~l~~~g 118 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRL-----------------------------------------HG-PGDDEALWEALAQVG 118 (204)
T ss_pred CccccCcCCcHHHHHHHHHHh-----------------------------------------cC-ccHHHHHHHHHHHcC
Confidence 998877788999998522100 00 011234567788889
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcC
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d 324 (652)
+. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++||+++++..+.+
T Consensus 119 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 119 LA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred CH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 86 467888999999999999999999999999999999999999999999988753 48899999999999998888
Q ss_pred eEEEE
Q 006275 325 KIVET 329 (652)
Q Consensus 325 ~ii~l 329 (652)
|++.+
T Consensus 198 ~~~~~ 202 (204)
T PRK13538 198 RKLRL 202 (204)
T ss_pred eEEec
Confidence 88776
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=342.02 Aligned_cols=205 Identities=25% Similarity=0.382 Sum_probs=170.9
Q ss_pred cEEEEEeeeeEeCCe-----eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------
Q 006275 423 SVVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~-----~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------- 489 (652)
..|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 359999999999764 4999999999999999999999999999999999999999999999997642
Q ss_pred -------cceecccccccCCCCCCHHHHHHHhhhh--cc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHH
Q 006275 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 -------~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.+|++|+....+ +..|+.+|+.+.... .. ...+.++++.+++.....++++.+||||||||++|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQL-FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEEEEEeCcchhh-hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 134444321122 346999999764321 11 2346678899998545778999999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++.++||++++|++|++.. .|+.++..
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 239 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS-IGSPFEIF 239 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999999988754 4699999999999999999999999999974 46666543
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=334.91 Aligned_cols=205 Identities=28% Similarity=0.382 Sum_probs=173.2
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceecc-------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~------- 489 (652)
..+|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 456999999999998889999999999999999999999999999999999986 58999999997752
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhhh---cc----HHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~L 554 (652)
.+|++|+ ..+++ .|+.+|+...... .. .+++.++++.+++. ....++++.+||||||||++|
T Consensus 91 ~~~~~i~~~~q~--~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 91 LLRAKVGMVFQK--PTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred HHhcceEEEecC--CccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 1244443 23444 7999999764321 11 23467888888873 245688999999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+.+++.+
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 244 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE-FGNTDTIFT 244 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999999999999999999999876 3599999999999999999999999999974 577777654
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=332.82 Aligned_cols=203 Identities=19% Similarity=0.267 Sum_probs=171.2
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-----------c
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----------N 491 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-----------~ 491 (652)
++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 46999999999988889999999999999999999999999999999999999999999999976521 2
Q ss_pred eecccccccCCCCCCHHHHHHHhhhhc----cHHHHHHHHhhC-CCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRC-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~~----~~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
|+.|+ ..+++..|+.+|+....... ....+.++++.+ ++ .+..++++.+||||||||++|||||+.+|+|||
T Consensus 84 ~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LS~G~~qrl~la~al~~~p~ill 160 (237)
T PRK11614 84 IVPEG--RRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRL-HERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160 (237)
T ss_pred EeccC--cccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHH-HHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 33433 34556689999997642111 122355666666 35 345678999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
|||||++||+.++..+.+.|+++ +.|||++|||++++.++|||+++|++|++. +.|++++..
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 225 (237)
T PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV-LEDTGDALL 225 (237)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE-eeCCHHHHh
Confidence 99999999999999999998764 469999999999999999999999999997 467877664
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=333.97 Aligned_cols=205 Identities=27% Similarity=0.384 Sum_probs=172.5
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceecc-------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~------- 489 (652)
.++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 457999999999988889999999999999999999999999999999999974 68999999997652
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhhh-------ccHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED-------WRIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~~-------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~L 554 (652)
.+|++|+ ..+++ .|+.+|+.+.... ...+++.++++.+++.. ...++++.+|||||||||+|
T Consensus 84 ~~~~~i~~v~q~--~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 160 (253)
T PRK14242 84 ELRRRVGMVFQK--PNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCI 160 (253)
T ss_pred HHhhcEEEEecC--CCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 1344443 23444 5999999764321 11235677888888742 34678899999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++.++||+|++|++|++. ..|..+++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 237 (253)
T PRK14242 161 ARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI-EVGPTEQIFT 237 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE-EeCCHHHHHc
Confidence 99999999999999999999999999999999876 359999999999999999999999999997 4577776653
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=350.95 Aligned_cols=196 Identities=23% Similarity=0.373 Sum_probs=170.8
Q ss_pred eEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------cceecccc
Q 006275 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------PNYFEQNQ 497 (652)
Q Consensus 432 ~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~~~~~~~~ 497 (652)
+.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q-- 78 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ-- 78 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC--
Confidence 4678888999999999999999999999999999999999999999999999998763 134444
Q ss_pred cccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 498 AEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 498 ~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
...+++.+|+.+|+.+.... + ..+.+.++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 34677889999999875432 1 134578899999994 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 572 NHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
++||+.++..+++.+.++ +.|||+||||++++..+||||++|++|++.. .|++++++..
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~~ei~~~ 220 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTPDEILRN 220 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCHHHHHhC
Confidence 999999999999988754 5699999999999999999999999999974 5887776554
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=353.86 Aligned_cols=202 Identities=23% Similarity=0.306 Sum_probs=169.2
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------c
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------P 490 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~ 490 (652)
+++.++.+.|+...+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 29 ~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~i 108 (400)
T PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108 (400)
T ss_pred ccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCE
Confidence 33344444444444899999999999999999999999999999999999999999999998752 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+|++|+ ..+++.+|+.+|+.+.... + ...++.++++.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus 109 gyv~Q~--~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~-~~~~~~~~~LSgGq~QRv~LArAL~~~P~i 185 (400)
T PRK10070 109 AMVFQS--FALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDI 185 (400)
T ss_pred EEEECC--CcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-hhhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 344443 4567789999999875321 1 124577899999995 578999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||||||++||+.++..+++.|.++ +.|||+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 186 LLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~-~~g~~~~l~~ 254 (400)
T PRK10070 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV-QVGTPDEILN 254 (400)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE-ecCCHHHHHh
Confidence 9999999999999999999998754 469999999999999999999999999997 4577776654
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=340.65 Aligned_cols=201 Identities=24% Similarity=0.313 Sum_probs=173.3
Q ss_pred EEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------cc
Q 006275 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------PN 491 (652)
Q Consensus 426 ~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~~ 491 (652)
.++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 5679999999999999999999999999999999999999999999999999999999997652 12
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
|++|. ..+++..|+.+|+...... ....++.++++.+++. +..++++.+|||||||||+|||||+.+|+||
T Consensus 106 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~il 182 (269)
T cd03294 106 MVFQS--FALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDIL 182 (269)
T ss_pred EEecC--cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 33433 3456678999999764321 1123577889999994 6789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||||+|||+.+++.+.+.|.++ +.|||++|||++++.++||++++|++|++.. .|+.+++.+
T Consensus 183 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 250 (269)
T cd03294 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ-VGTPEEILT 250 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHHh
Confidence 999999999999999999998765 4699999999999999999999999999974 577777654
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=329.07 Aligned_cols=198 Identities=29% Similarity=0.378 Sum_probs=171.7
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------cceeccccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------PNYFEQNQA 498 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------~~~~~~~~~ 498 (652)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .++.+|.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~-- 78 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIES-- 78 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCC--
Confidence 47899999999889999999999999999999999999999999999999999999999997652 2244443
Q ss_pred ccCCCCCCHHHHHHHhhh--hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q 006275 499 EALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (652)
Q Consensus 499 ~~~~~~~tv~e~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~ 576 (652)
..+++..|+.+|+..... ......+.++++.+++. +..++++.+||||||||++||||++.+|++|||||||++||+
T Consensus 79 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 79 PPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 345567899999875432 12345678899999995 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChh
Q 006275 577 PSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (652)
Q Consensus 577 ~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~ 626 (652)
.+++.+.++|.++ +.|||++|||++++..+|||+++|++|++.. .|++.
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~ 209 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY-QGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE-ecChh
Confidence 9999999999865 3599999999999999999999999999974 46544
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=326.75 Aligned_cols=191 Identities=32% Similarity=0.482 Sum_probs=165.6
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceeccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~~ 496 (652)
|+++|++++|+++.+ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 478999999987543 999999999999999999999999999999999999999999998652 2355554
Q ss_pred ccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
..+++..|+.+|+...... ....++.++++.+++. +..++++.+||||||||++|||||+.+|++||||||
T Consensus 79 --~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP 155 (211)
T cd03298 79 --NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155 (211)
T ss_pred --cccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3456678999999754321 1234578899999995 567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
|++||+.++..+.+.|+++ +.|||+||||++++..+|||+++|++|++..
T Consensus 156 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 9999999999999999754 4699999999999999999999999999863
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=338.80 Aligned_cols=211 Identities=21% Similarity=0.274 Sum_probs=170.0
Q ss_pred CCCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC--------
Q 006275 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (652)
Q Consensus 94 ~~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~-------- 160 (652)
..+.|+++|++++|++.++|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++|+|.++|..
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 3457999999999988889999999999999999999999999999999999864 499999998632
Q ss_pred ----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHH
Q 006275 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (652)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (652)
..++|++|++.++. .||.||+...... ... .+.....
T Consensus 116 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~ 156 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFP-KSIFDNIAYGPRL---------------HGI-----------------------NDKKQLE 156 (286)
T ss_pred HHhhhcEEEECCCCCCCc-cCHHHHHHhHHHh---------------cCC-----------------------CcHHHHH
Confidence 25999999987765 5999998532100 000 0000112
Q ss_pred HHHHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEE
Q 006275 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (652)
Q Consensus 237 ~~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIi 311 (652)
..+.++++.+|+. .+..++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .++|||+
T Consensus 157 ~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIi 236 (286)
T PRK14275 157 EIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMI 236 (286)
T ss_pred HHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 3344555566653 1345778999999999999999999999999999999999999999999988753 3579999
Q ss_pred EecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 312 vsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+|||++++..+||++++|++|++. ..|...++
T Consensus 237 vsH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~~ 268 (286)
T PRK14275 237 VTHNMQQASRVSDYTMFFYEGVLV-EHAPTAQL 268 (286)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999984 66765554
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=328.80 Aligned_cols=197 Identities=26% Similarity=0.404 Sum_probs=166.8
Q ss_pred eEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------
Q 006275 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (652)
Q Consensus 98 i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------- 160 (652)
|+++|+++.|++ +.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 789999999975 569999999999999999999999999999999999999999999998743
Q ss_pred ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHH
Q 006275 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (652)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (652)
..++|++|++.+++..|+.+|+...... .. ....+.....+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~--------------~~------------------------~~~~~~~~~~~~ 123 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALEL--------------QP------------------------NLSYQEARERAR 123 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHh--------------cc------------------------CCCHHHHHHHHH
Confidence 2599999999887778999998532100 00 001112334567
Q ss_pred HHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 006275 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (652)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~ 316 (652)
++++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .++|||++||++
T Consensus 124 ~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 124 AMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 788999985 567888999999999999999999999999999999999999999998887742 489999999999
Q ss_pred HHHHhhcCeEEEEcCCeE
Q 006275 317 AFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~ 334 (652)
+.. ++||+|++|++|++
T Consensus 203 ~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 203 RIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHH-hhCCEEEEEECCEE
Confidence 965 79999999999864
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=338.94 Aligned_cols=204 Identities=27% Similarity=0.399 Sum_probs=174.2
Q ss_pred EEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------c
Q 006275 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------P 490 (652)
Q Consensus 424 ~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~ 490 (652)
+|+++||+++|+ .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 478999999996 467999999999999999999999999999999999999999999999998752 1
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+|++|+... ..+..|+.+|+.+.... .....+.++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 81 ~~v~q~~~~-~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 81 GIVFQNPDD-QLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred EEEeeChhh-hhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 345554321 23457999999764321 1123577899999995 678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|++.. .|+++++..
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 226 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EGTPKEVFS 226 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999999865 4599999999999999999999999999974 588777654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=357.38 Aligned_cols=212 Identities=27% Similarity=0.420 Sum_probs=180.9
Q ss_pred CCCceEEEeEEEEeCC-----------eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--
Q 006275 94 ISSGVKLENISKSYKG-----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-- 160 (652)
Q Consensus 94 ~~~~i~v~~ls~~y~~-----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-- 160 (652)
..+.++++|+++.|.. ..+++||||+|.+||++||||++|||||||.|+|+|+++|++|+|.++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4568999999999962 248999999999999999999999999999999999999999999998754
Q ss_pred ----------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHH
Q 006275 161 ----------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (652)
Q Consensus 161 ----------~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (652)
.++-+++|+| .+.+..||.+++...+.-. .
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~--------------------------------------~ 398 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH--------------------------------------G 398 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh--------------------------------------c
Confidence 3688899998 4667889999885332100 0
Q ss_pred hCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----c
Q 006275 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (652)
Q Consensus 229 ~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~ 304 (652)
.....+..+++.++++.+|++.+.+++++.+|||||||||+|||||+.+|++|++|||||+||+..+..+.++|+ +
T Consensus 399 ~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e 478 (539)
T COG1123 399 GGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478 (539)
T ss_pred ccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH
Confidence 001123345788999999999778999999999999999999999999999999999999999999999988874 4
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 305 ~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
.|.|.|+||||+.++..+||||++|.+|+++ ..|+.++.
T Consensus 479 ~g~t~lfISHDl~vV~~i~drv~vm~~G~iV-E~G~~~~v 517 (539)
T COG1123 479 LGLTYLFISHDLAVVRYIADRVAVMYDGRIV-EEGPTEKV 517 (539)
T ss_pred hCCEEEEEeCCHHHHHhhCceEEEEECCeEE-EeCCHHHH
Confidence 6999999999999999999999999999984 66765443
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=333.81 Aligned_cols=205 Identities=24% Similarity=0.354 Sum_probs=172.9
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc-------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~------- 489 (652)
.++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 4479999999999888899999999999999999999999999999999999987 4899999997652
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhhh---c----cHHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~----~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~L 554 (652)
.+|++|. ..++ ..|+.+|+.+.... . ..+.+.++++.+++. .+..++++.+||||||||++|
T Consensus 85 ~~~~~i~~v~q~--~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 85 ELRRKIGMVFQT--PNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred HHhhceEEEeec--cccc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 1244443 2333 58999999764321 1 123467778888863 245688999999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||+.+|++|||||||++||+.++..+.++|+++. .|||+||||++++.++|||+++|++|++.. .|+.++..+
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 238 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE-ESSTDELFF 238 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 999999999999999999999999999999998763 599999999999999999999999999974 577777653
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=338.27 Aligned_cols=211 Identities=25% Similarity=0.427 Sum_probs=175.8
Q ss_pred EEEEEeeeeEeC---------CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----
Q 006275 424 VVTIKNLEFGYE---------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~---------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----- 489 (652)
+|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 689999999997 478999999999999999999999999999999999999999999999997652
Q ss_pred --------cceecccccccCCCCCCHHHHHHHhhh-------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHH
Q 006275 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 --------~~~~~~~~~~~~~~~~tv~e~~~~~~~-------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~L 554 (652)
.+|++|+....+.+..++.+++..... ......+.++++.+++.....++++.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 234455432235567899998754321 11123578899999996456789999999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++. ..|+.++...
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~ 241 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV-ETQPVGDKLT 241 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe-eeCChhhccC
Confidence 99999999999999999999999999999988754 469999999999999999999999999997 4576666544
Q ss_pred hcCCc
Q 006275 631 SFSPF 635 (652)
Q Consensus 631 ~~~~~ 635 (652)
..+++
T Consensus 242 ~~~~~ 246 (268)
T PRK10419 242 FSSPA 246 (268)
T ss_pred CCCHH
Confidence 33333
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=338.35 Aligned_cols=210 Identities=20% Similarity=0.291 Sum_probs=167.3
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~--------- 160 (652)
.++|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 347999999999988889999999999999999999999999999999999987 699999998742
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..++|++|++.++. .|++||+....... . . . +....+.
T Consensus 102 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-----------~----~----------------------~~~~~~~ 142 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIH-G-----------I----K----------------------DKKTLDE 142 (271)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHHHHHHHhc-C-----------C----C----------------------cHHHHHH
Confidence 25999999987755 59999985321100 0 0 0 0000111
Q ss_pred HHHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
.+.++++.+++. .+..++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++
T Consensus 143 ~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiv 222 (271)
T PRK14238 143 IVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIV 222 (271)
T ss_pred HHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEE
Confidence 222333333221 1345678899999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|||++++..+||++++|++|++. ..|+.+++
T Consensus 223 sH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~ 253 (271)
T PRK14238 223 THNMQQAARISDKTAFFLNGYVN-EYDDTDKI 253 (271)
T ss_pred EcCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999984 55776654
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=339.55 Aligned_cols=211 Identities=24% Similarity=0.301 Sum_probs=172.9
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCC--------CcEEEECCCCc-------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--------SGNVIKAKSNM------- 161 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~--------~G~i~~~~~~~------- 161 (652)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|...
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 378999999999889999999999999999999999999999999999999998 99999987431
Q ss_pred ---eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 162 ---~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
.++|++|++..++..|++||+......... .. ... .......
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~-------------~~---------------------~~~-~~~~~~~ 125 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHAR-------------RA---------------------GAL-THRDGEI 125 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhccccccc-------------cc---------------------ccC-CHHHHHH
Confidence 389999998666678999998532100000 00 000 0112234
Q ss_pred HHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHcc----C
Q 006275 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (652)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~---------~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~ 305 (652)
+.++++.+|+. ...++++.+|||||||||+|||||+ .+|++|||||||++||+.+++++.++|++ .
T Consensus 126 ~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 204 (272)
T PRK13547 126 AWQALALAGAT-ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW 204 (272)
T ss_pred HHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhc
Confidence 56778888986 4678889999999999999999999 59999999999999999999999888753 3
Q ss_pred CCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 306 g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+.|||+||||++++.++||++++|++|++. +.|+.+++
T Consensus 205 ~~tviiisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 242 (272)
T PRK13547 205 NLGVLAIVHDPNLAARHADRIAMLADGAIV-AHGAPADV 242 (272)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCeEE-EecCHHHH
Confidence 899999999999999999999999999974 55665443
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=304.54 Aligned_cols=198 Identities=27% Similarity=0.442 Sum_probs=170.4
Q ss_pred ceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------
Q 006275 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------ 160 (652)
.|+++++++..+. ..||++|+|.|++||.+|||||+||||||||-+++|+..|++|+|.+.|..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 6899999999864 359999999999999999999999999999999999999999999998753
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
.++|+|+|.+.+.+++|..||++.... +... ........
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPle---------------L~ge------------------------~~~~~~~~ 126 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLE---------------LRGE------------------------SSADSRAG 126 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhh---------------hcCC------------------------ccccHHHH
Confidence 369999999999999999999863210 0000 01122345
Q ss_pred HHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEec
Q 006275 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISH 314 (652)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsH 314 (652)
.+++|+.+|+. ..++.++.+|||||+|||+||||++..|+||+.||||-+||.++-+.+.++| ++.|.|.|+|||
T Consensus 127 A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTH 205 (228)
T COG4181 127 AKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205 (228)
T ss_pred HHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeC
Confidence 67889999997 5678889999999999999999999999999999999999999999888876 567999999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEE
Q 006275 315 DRAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~ 335 (652)
|+..+.+ |+|++-|.+|++.
T Consensus 206 D~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 206 DPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred CHHHHHh-hhheeeeecceec
Confidence 9999965 9999999999874
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=339.32 Aligned_cols=207 Identities=24% Similarity=0.330 Sum_probs=172.7
Q ss_pred ceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 97 ~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
+|+++|++++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 5899999999974 249999999999999999999999999999999999999999999998743 249
Q ss_pred EEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
+|++|++. .++..||.+|+....... ........+++.++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~---------------------------------------~~~~~~~~~~~~~~ 124 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQ---------------------------------------GIPREEMIKRVDEA 124 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHc---------------------------------------CCCHHHHHHHHHHH
Confidence 99999974 456789999985321100 00111223455677
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~-~g~tvIivsHd~~~ 318 (652)
++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+ + .|.|||++||++++
T Consensus 125 l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 125 LLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred HHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 8888885 56788899999999999999999999999999999999999999999988874 2 48999999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+. .||+|++|++|++. ..|+.+++.
T Consensus 204 ~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (277)
T PRK13642 204 AA-SSDRILVMKAGEII-KEAAPSELF 228 (277)
T ss_pred HH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence 96 69999999999974 667766654
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=334.79 Aligned_cols=205 Identities=22% Similarity=0.326 Sum_probs=172.8
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc-------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~------- 489 (652)
.++|+++|+++.|+++.+|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 4479999999999988899999999999999999999999999999999999975 7999999997652
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhhh--cc----HHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|++|. ..+++ .|+.+|+.+.... .. ...+.++++.+++. ....++++.+|||||||||+||
T Consensus 90 ~~~~~i~~v~q~--~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 166 (258)
T PRK14268 90 ELRKNVGMVFQK--PNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA 166 (258)
T ss_pred HHhhhEEEEecC--CccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence 1234443 23444 8999999864321 11 22467788888873 2456889999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.++|||+++|++|++. ..|.++++.+
T Consensus 167 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 242 (258)
T PRK14268 167 RTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELI-EFGQTRQIFH 242 (258)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999999999999999875 369999999999999999999999999997 4577777654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=317.20 Aligned_cols=206 Identities=24% Similarity=0.404 Sum_probs=183.1
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------cc
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~ 491 (652)
+.+.++|+.++|+.++++++|||+|++||++|++|||||||||.+.+++|+++|++|+|.+++.++. .+
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 3589999999999999999999999999999999999999999999999999999999999999874 24
Q ss_pred eecccccccCCCCCCHHHHHHHhhhhc--------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAEDW--------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~~--------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
|.+|. ...+..+||.+|+....+.. +..++.++|+.|++ .+..+++..+||||||+|+.|||||+.+|+
T Consensus 83 YLpQE--~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i-~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 83 YLPQE--ASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI-THLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccccc--chHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhch-HHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 66654 46778899999998764321 12246689999999 578899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
++|||||++|+||-+...+++++..+ +..|++.-|+..+...+|||.++|..|++. ..|+++++.+..
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~~n~ 230 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIVNNE 230 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHhcCh
Confidence 99999999999999999999988765 459999999999999999999999999997 579999887653
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=365.44 Aligned_cols=207 Identities=25% Similarity=0.439 Sum_probs=172.9
Q ss_pred CCcEEEEEeeeeEeCCe---eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---c----
Q 006275 421 GRSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---P---- 490 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~---~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---~---- 490 (652)
-++.|+++||+|.|+.+ +||+|+||+|+|||++|||||||+||||+.++|.++++|++|+|.+||.++. +
T Consensus 462 ~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred ccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 45679999999999865 6999999999999999999999999999999999999999999999999873 2
Q ss_pred ---ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCC-------h---hhhccCcCCCCHHHHHHHHHHHH
Q 006275 491 ---NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK-------A---DMLDRKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 491 ---~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~-------~---~~~~~~~~~LSgGqrqrv~LAra 557 (652)
+++.|. +..++.|+.|||.++......+++..+.+..+-. . .....+..+||||||||+|||||
T Consensus 542 ~~Ig~V~QE---PvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARA 618 (716)
T KOG0058|consen 542 RKIGLVGQE---PVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARA 618 (716)
T ss_pred HHeeeeecc---ceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHH
Confidence 233332 3457899999999987765555555444433221 1 12234456999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
|+++|.||||||+||+||.+++..++++|.+. +.|||+|+|++.+|++ +|+|+++++|++++ .|+.++.++..
T Consensus 619 Llr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E-~G~h~eLl~~~ 693 (716)
T KOG0058|consen 619 LLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVE-MGTHDELLSKP 693 (716)
T ss_pred HhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEe-cccHHHHhhCc
Confidence 99999999999999999999999999999865 4699999999999987 99999999999985 58777766554
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=309.70 Aligned_cols=211 Identities=25% Similarity=0.429 Sum_probs=182.3
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------- 160 (652)
+.++++|+.++||...+|++|||+-.+|+++.|||.+||||||+|+||.=+..|+.|.|.++|..
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 45999999999999999999999999999999999999999999999999999999999998632
Q ss_pred --------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCCh
Q 006275 161 --------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (652)
Q Consensus 161 --------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (652)
.+.|+|+|+++++..+||.||++.+--. + + .+..
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvh---V----------L-------------------------g~~k 126 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH---V----------L-------------------------GVSK 126 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchH---h----------h-------------------------cCCH
Confidence 2489999999999999999998643211 0 0 0222
Q ss_pred hcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeE
Q 006275 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPM 309 (652)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tv 309 (652)
.+..++...+|.++|+. +..+.++..|||||+||++|||||+.+|+++|+|||||+|||+-..++.+.+ .+.|+|+
T Consensus 127 ~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTM 205 (256)
T COG4598 127 AEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTM 205 (256)
T ss_pred HHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeE
Confidence 33445667889999997 5677899999999999999999999999999999999999999988877654 5679999
Q ss_pred EEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 310 IivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
++|||.+.|+.+++++|++|++|.+ ..+|++.+...
T Consensus 206 v~VTHEM~FAR~Vss~v~fLh~G~i-EE~G~P~qvf~ 241 (256)
T COG4598 206 VVVTHEMGFARDVSSHVIFLHQGKI-EEEGPPEQVFG 241 (256)
T ss_pred EEEeeehhHHHhhhhheEEeeccee-cccCChHHHhc
Confidence 9999999999999999999999987 57888777654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=334.93 Aligned_cols=201 Identities=30% Similarity=0.460 Sum_probs=173.9
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cceec
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFE 494 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~~ 494 (652)
|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 68999999999889999999999999999999999999999999999999999999999997652 23455
Q ss_pred ccccccCCCCCCHHHHHHHhhh--------h--ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 495 QNQAEALDLDKTVLETVAEAAE--------D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~--------~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
|+. .+.+..|+.+|+..... . .....+.++++.+++ .+..++++.+||||||||++|||||+.+|++
T Consensus 82 q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (256)
T TIGR03873 82 QDS--DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL-SHLADRDMSTLSGGERQRVHVARALAQEPKL 158 (256)
T ss_pred ccC--ccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCc-HhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 442 34567899999976321 0 112357788999999 4678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
|||||||++||+.++..+.++|+++ +.|||++|||++++..+||+|++|++|++. ..|+.+++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 225 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV-AAGPPREVL 225 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE-EecCHHHhh
Confidence 9999999999999999999999876 469999999999999999999999999987 457776653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=333.03 Aligned_cols=205 Identities=25% Similarity=0.323 Sum_probs=173.6
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc--------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL-------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~-------- 489 (652)
.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 369999999999888899999999999999999999999999999999999987 4999999998753
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhh--h------ccHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE--D------WRIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~--~------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~L 554 (652)
.+|++|+ ..+++..|+.+|+..... . .....+.++++.+++.. ...++++.+||||||||++|
T Consensus 83 ~~~~i~~~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14267 83 VRREVGMVFQY--PNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI 160 (253)
T ss_pred HhhceeEEecC--CccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence 1234443 345667899999976431 1 01134667888888742 34688999999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|++.. .|++++..+
T Consensus 161 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 237 (253)
T PRK14267 161 ARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE-VGPTRKVFE 237 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999999999999999999999875 3699999999999999999999999999974 577777654
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=333.20 Aligned_cols=206 Identities=20% Similarity=0.286 Sum_probs=169.6
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC----CCcEEEECCCC--------ceEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p----~~G~i~~~~~~--------~~i~ 164 (652)
.|+++|++++| ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..|+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 58999999999 66799999999999999999999999999999999999999 99999998753 3599
Q ss_pred EEeccCc--cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 165 FLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 165 ~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|++|++. +.+..|+.+++...... ......+.++.++
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~ 121 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLA-----------------------------------------LGKPADDATLTAA 121 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHH-----------------------------------------cCCChHHHHHHHH
Confidence 9999974 22345777775321000 0000012345677
Q ss_pred hhhcCCCcc--cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 006275 243 MPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (652)
Q Consensus 243 l~~lgl~~~--~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~ 316 (652)
++.+|+... ..++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|.|||++||++
T Consensus 122 l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 122 LEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM 201 (254)
T ss_pred HHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 888888632 46788999999999999999999999999999999999999999999887743 478999999999
Q ss_pred HHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+++..+||+++++++|++ ...|+.+++.
T Consensus 202 ~~~~~~~d~v~~l~~G~i-~~~~~~~~~~ 229 (254)
T PRK10418 202 GVVARLADDVAVMSHGRI-VEQGDVETLF 229 (254)
T ss_pred HHHHHhCCEEEEEECCEE-EEecCHHHHh
Confidence 999999999999999997 4667766553
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=332.52 Aligned_cols=191 Identities=28% Similarity=0.446 Sum_probs=159.1
Q ss_pred EEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEe-ccCccCC
Q 006275 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS-QEFEVSM 174 (652)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~-Q~~~~~~ 174 (652)
+.|+.+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++ |.+.+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 55667789999999999999999999999999999999999999999999998742 2599997 5566667
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (652)
..|++||+..... +. .........++.++++.+|+. +..+
T Consensus 109 ~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~gl~-~~~~ 148 (236)
T cd03267 109 DLPVIDSFYLLAA---------------IY------------------------DLPPARFKKRLDELSELLDLE-ELLD 148 (236)
T ss_pred CCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-hHhc
Confidence 8899999742100 00 000111233455677888886 5678
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEc
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ii~l~ 330 (652)
+++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .++|||+|||+++++..+||++++|.
T Consensus 149 ~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 149 TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 88999999999999999999999999999999999999999999988753 37899999999999999999999999
Q ss_pred CCeEE
Q 006275 331 MGVSR 335 (652)
Q Consensus 331 ~G~~~ 335 (652)
+|++.
T Consensus 229 ~G~i~ 233 (236)
T cd03267 229 KGRLL 233 (236)
T ss_pred CCEEE
Confidence 99874
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=331.85 Aligned_cols=204 Identities=25% Similarity=0.337 Sum_probs=174.3
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~--------- 489 (652)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 58999999999988899999999999999999999999999999999999974 7999999998652
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhh-------c-cHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHHHH
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAED-------W-RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~-------~-~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LAra 557 (652)
.+|++|+ ..+++..|+.+|+...... . ..+.+.++++.+++.. ...++++.+|||||||||+||||
T Consensus 83 ~i~~v~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 83 RVQMVFQI--PNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred cEEEEecc--CccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 1344444 3456778999999764311 0 1234678899998842 34688999999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|+.+|++|||||||++||+.++..+.+.|++. +.|||+||||++++..+||++++|++|++. ..|+.+++.+
T Consensus 161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 234 (250)
T PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV-EWGPTREVFT 234 (250)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE-EECCHHHHHc
Confidence 99999999999999999999999999999875 369999999999999999999999999997 4588877654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=369.03 Aligned_cols=211 Identities=34% Similarity=0.537 Sum_probs=179.6
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCc-cC
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE-VS 173 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~-~~ 173 (652)
.++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ ...+|||++|++. ++
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~-~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG-ETVKLAYVDQSRDALD 398 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC-CceEEEEEeCCccccC
Confidence 457999999999988889999999999999999999999999999999999999999999984 4558999999963 66
Q ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccc
Q 006275 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (652)
Q Consensus 174 ~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~ 253 (652)
+..|+.||+....... ... ..+..+.++++.+|+.....
T Consensus 399 ~~~tv~e~l~~~~~~~---------------------------------------~~~--~~~~~~~~~l~~~~l~~~~~ 437 (552)
T TIGR03719 399 PNKTVWEEISGGLDII---------------------------------------QLG--KREVPSRAYVGRFNFKGSDQ 437 (552)
T ss_pred CCCcHHHHHHhhcccc---------------------------------------ccC--cchHHHHHHHHhCCCChhHh
Confidence 7789999985321000 000 00112345788889864457
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC-C
Q 006275 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM-G 332 (652)
Q Consensus 254 ~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~-G 332 (652)
++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++.+.|||+||||++++..+||+|++|++ |
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~ 517 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDS 517 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCC
Confidence 889999999999999999999999999999999999999999999999988767999999999999999999999987 5
Q ss_pred eEEEecCChHHHHHH
Q 006275 333 VSRTYEGNYSQYVLE 347 (652)
Q Consensus 333 ~~~~~~g~~~~~~~~ 347 (652)
++..+.|+|++|...
T Consensus 518 ~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 518 HVEWFEGNYSEYEED 532 (552)
T ss_pred eEEEeCCCHHHHHHH
Confidence 777789999877544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=348.66 Aligned_cols=201 Identities=26% Similarity=0.408 Sum_probs=173.8
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (652)
||++ ||+++|+++.+ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 4778 99999987643 899999999999999999999999999999999999999999997652
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
.+|++|+ ..+++.+|+.+|+.+........++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 i~~v~q~--~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDE 154 (352)
T PRK11144 78 IGYVFQD--ARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDE 154 (352)
T ss_pred EEEEcCC--cccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 1244443 45677899999998764433445688899999995 67899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|++++....
T Consensus 155 Pts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~i~~~ 219 (352)
T PRK11144 155 PLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA-FGPLEEVWAS 219 (352)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE-ecCHHHHHhC
Confidence 99999999999999988754 4699999999999999999999999999974 5777766544
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=333.94 Aligned_cols=210 Identities=18% Similarity=0.259 Sum_probs=169.4
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~---------- 160 (652)
..|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 359999999999888899999999999999999999999999999999999985 48999998742
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..|+|++|++.+++ .|++||+...+... . ..+.......
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---------------~-----------------------~~~~~~~~~~ 126 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRIS---------------A-----------------------KLPQADLDEI 126 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHh---------------c-----------------------CCCHHHHHHH
Confidence 25999999988765 89999985321100 0 0000011223
Q ss_pred HHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.++++.+|+. ....++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||++|
T Consensus 127 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~t 206 (259)
T PRK14260 127 VESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVT 206 (259)
T ss_pred HHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 44555666653 1356778899999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcCeEEEEc-----CCeEEEecCChHHHH
Q 006275 314 HDRAFLDQLCTKIVETE-----MGVSRTYEGNYSQYV 345 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~-----~G~~~~~~g~~~~~~ 345 (652)
|+++++..+||++++|+ +|++ ...|+..++.
T Consensus 207 H~~~~i~~~~d~i~~l~~~~~~~G~i-~~~~~~~~~~ 242 (259)
T PRK14260 207 HNMQQATRVSDFTAFFSTDESRIGQM-VEFGVTTQIF 242 (259)
T ss_pred CCHHHHHHhcCeEEEEeccCCCCceE-EEeCCHHHHh
Confidence 99999999999999997 4876 4667766553
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=332.67 Aligned_cols=213 Identities=21% Similarity=0.283 Sum_probs=168.7
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCC--CCCCcEEEECCCC-----------ceE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKI 163 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p~~G~i~~~~~~-----------~~i 163 (652)
+|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 378999999999888999999999999999999999999999999999995 6999999998743 249
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|++..++..|+.+++...+.. +.. .. .....+.......+.+++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~----------~~~-~~---------------------~~~~~~~~~~~~~~~~~l 128 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNA----------VRS-YR---------------------GQEPLDRFDFQDLMEEKI 128 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhh----------hhc-cc---------------------ccccchHHHHHHHHHHHH
Confidence 9999998766655655443211100 000 00 000011122344566778
Q ss_pred hhcCCCcccccCCCC-CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006275 244 PELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~-~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (652)
+.++++....++++. +|||||||||+|||||+.+|++|||||||+|||+.+++++.++|+ +.++|||++|||++++
T Consensus 129 ~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred HHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 888886455667675 899999999999999999999999999999999999999988663 4588999999999999
Q ss_pred Hhh-cCeEEEEcCCeEEEecCChH
Q 006275 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (652)
Q Consensus 320 ~~~-~d~ii~l~~G~~~~~~g~~~ 342 (652)
..+ ||+|+++++|++. +.|+++
T Consensus 209 ~~~~~d~i~~l~~g~i~-~~g~~~ 231 (248)
T PRK09580 209 DYIKPDYVHVLYQGRIV-KSGDFT 231 (248)
T ss_pred HhhhCCEEEEEECCeEE-EeCCHH
Confidence 887 8999999999984 667765
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=334.28 Aligned_cols=212 Identities=17% Similarity=0.286 Sum_probs=172.9
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC------C---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------S--------- 159 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~------~--------- 159 (652)
.+.|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4579999999999999999999999999999999999999999999999999999997766554 2
Q ss_pred -CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 160 -NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 160 -~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
...++|++|++.+++..|+.+|+....... . .....+...+
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~---------------~-----------------------~~~~~~~~~~ 129 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH---------------G-----------------------IKEKREIKKI 129 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhc---------------C-----------------------CCCHHHHHHH
Confidence 135999999998877889999985321000 0 0000112234
Q ss_pred HHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.++++.+|+.. +..++.+..||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||+||
T Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvs 209 (257)
T PRK14246 130 VEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVS 209 (257)
T ss_pred HHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 556677777742 345778899999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+++++..+||+++++++|++. ..|+.+++.
T Consensus 210 h~~~~~~~~~d~v~~l~~g~i~-~~g~~~~~~ 240 (257)
T PRK14246 210 HNPQQVARVADYVAFLYNGELV-EWGSSNEIF 240 (257)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999885 556655543
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=324.96 Aligned_cols=186 Identities=25% Similarity=0.402 Sum_probs=161.9
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEec
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~Q 168 (652)
|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 478999999998889999999999999999999999999999999999999999999998743 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++..|++||+...... ..++++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~---------------------------------------------~~~~~~~~~l~~~~l 115 (201)
T cd03231 81 APGIKTTLSVLENLRFWHAD---------------------------------------------HSDEQVEEALARVGL 115 (201)
T ss_pred ccccCCCcCHHHHHHhhccc---------------------------------------------ccHHHHHHHHHHcCC
Confidence 98887788999997521000 012345567778888
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCe
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ 325 (652)
. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|+ +.|+|+|++||+...+..+|++
T Consensus 116 ~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 116 N-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred h-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccce
Confidence 6 45688899999999999999999999999999999999999999999998875 3489999999999999999999
Q ss_pred EEEE
Q 006275 326 IVET 329 (652)
Q Consensus 326 ii~l 329 (652)
++.+
T Consensus 195 ~~~~ 198 (201)
T cd03231 195 ELDL 198 (201)
T ss_pred eEec
Confidence 9877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=335.50 Aligned_cols=211 Identities=20% Similarity=0.285 Sum_probs=170.1
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~--------- 160 (652)
.++|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 346999999999988889999999999999999999999999999999999987 489999987632
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..++|++|++.++.. |+.||+...+... .. ......+.
T Consensus 103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---------------~~-----------------------~~~~~~~~ 143 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ---------------GI-----------------------NNRRVLDE 143 (272)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHhc---------------CC-----------------------CcHHHHHH
Confidence 259999999877654 9999985321100 00 00001122
Q ss_pred HHHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
++.++++.+++.. ...++.+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++
T Consensus 144 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiiv 223 (272)
T PRK14236 144 AVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIV 223 (272)
T ss_pred HHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 3444555666532 245778899999999999999999999999999999999999999999888753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
||+++++.++||+|+++++|++. ..|+.+++.
T Consensus 224 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 255 (272)
T PRK14236 224 THNMQQAARVSDYTAFMYMGKLV-EYGDTDTLF 255 (272)
T ss_pred eCCHHHHHhhCCEEEEEECCEEE-ecCCHHHHh
Confidence 99999999999999999999974 567766543
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=331.01 Aligned_cols=210 Identities=22% Similarity=0.379 Sum_probs=175.9
Q ss_pred eEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-C----CCcEEEECCCC--------
Q 006275 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-P----DSGNVIKAKSN-------- 160 (652)
Q Consensus 98 i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-p----~~G~i~~~~~~-------- 160 (652)
++++|++.+|.. .++++||||+|++||++||||.+||||||+.++|+|+++ | .+|+|.++|.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 789999999953 469999999999999999999999999999999999998 4 57899998852
Q ss_pred ------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhC-C
Q 006275 161 ------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV-N 231 (652)
Q Consensus 161 ------~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 231 (652)
..|+|++|+| .+.+-.||.+.+...+... ... .
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--------------------------------------~~~~~ 123 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--------------------------------------GKGLS 123 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--------------------------------------hcchh
Confidence 2699999998 4545667777664322110 000 1
Q ss_pred hhcHHHHHHHHhhhcCCCcc--cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cC
Q 006275 232 LDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (652)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~--~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~ 305 (652)
..+..+++.++|+.+|++.. ..+.++++|||||+|||.||.||+.+|++||.||||++||+..+.++.++|+ +.
T Consensus 124 ~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~ 203 (316)
T COG0444 124 KKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK 203 (316)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhc
Confidence 22345677889999999865 7799999999999999999999999999999999999999999999988774 47
Q ss_pred CCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 306 g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
|.|+|+||||+..+.++||||+||..|++ +..|+..++..
T Consensus 204 ~~aiilITHDl~vva~~aDri~VMYaG~i-VE~g~~~~i~~ 243 (316)
T COG0444 204 GTALILITHDLGVVAEIADRVAVMYAGRI-VEEGPVEEIFK 243 (316)
T ss_pred CCEEEEEeCCHHHHHHhcceEEEEECcEE-EEeCCHHHHhc
Confidence 99999999999999999999999999998 47787666544
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=367.26 Aligned_cols=206 Identities=31% Similarity=0.558 Sum_probs=179.4
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCc--cC
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE--VS 173 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~--~~ 173 (652)
.+|+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .++||++|++. +.
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~~~q~~~~~~~ 396 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-ANIGYYAQDHAYDFE 396 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-eEEEEEcccccccCC
Confidence 4799999999998888999999999999999999999999999999999999999999999864 57999999974 33
Q ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccc
Q 006275 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (652)
Q Consensus 174 ~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~ 253 (652)
...|+.+|+.. +.. ....+.++.++++.+|+..+..
T Consensus 397 ~~~t~~~~~~~-~~~-------------------------------------------~~~~~~~~~~~l~~~~l~~~~~ 432 (530)
T PRK15064 397 NDLTLFDWMSQ-WRQ-------------------------------------------EGDDEQAVRGTLGRLLFSQDDI 432 (530)
T ss_pred CCCcHHHHHHH-hcc-------------------------------------------CCccHHHHHHHHHHcCCChhHh
Confidence 46799988631 000 0011234567788889854567
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCe
Q 006275 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 254 ~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~ 333 (652)
++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++.+.|||+||||++++..+||+|+++++|+
T Consensus 433 ~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~ 512 (530)
T PRK15064 433 KKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDG 512 (530)
T ss_pred cCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 89999999999999999999999999999999999999999999999998877899999999999999999999999999
Q ss_pred EEEecCChHHHHH
Q 006275 334 SRTYEGNYSQYVL 346 (652)
Q Consensus 334 ~~~~~g~~~~~~~ 346 (652)
+..+.|++.++..
T Consensus 513 i~~~~g~~~~~~~ 525 (530)
T PRK15064 513 VVDFSGTYEEYLR 525 (530)
T ss_pred EEEcCCCHHHHHH
Confidence 8668899887754
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=330.89 Aligned_cols=211 Identities=25% Similarity=0.373 Sum_probs=182.6
Q ss_pred ceEEEeEEEEeCCe------------------------eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Q 006275 97 GVKLENISKSYKGV------------------------TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (652)
Q Consensus 97 ~i~v~~ls~~y~~~------------------------~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G 152 (652)
.|+++|+++-|+.+ .-++|+||+|++||+..|.|-+|||||||+++|.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 48899999999641 147899999999999999999999999999999999999999
Q ss_pred EEEECCCC--------------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHH
Q 006275 153 NVIKAKSN--------------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218 (652)
Q Consensus 153 ~i~~~~~~--------------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (652)
+|.++|.+ .++++|+|.+.++|..||.||+..++.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe------------------------------- 132 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE------------------------------- 132 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee-------------------------------
Confidence 99999864 369999999999999999999864321
Q ss_pred HHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHH
Q 006275 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298 (652)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l 298 (652)
...++..+-++++.+.++.+|+. .+.++++.+|||||||||.|||||+.+|+|||+|||||+|||--+..+
T Consensus 133 --------v~Gv~~~er~~~a~~~l~~VgL~-~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m 203 (386)
T COG4175 133 --------VQGVPKAEREERALEALELVGLE-GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203 (386)
T ss_pred --------ecCCCHHHHHHHHHHHHHHcCch-hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence 01233445567788899999997 688999999999999999999999999999999999999999888887
Q ss_pred HHHH----ccCCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHHHH
Q 006275 299 EGYL----GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348 (652)
Q Consensus 299 ~~~L----~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~~ 348 (652)
.+.| ++.++|||+||||++++.++.|||..|++|++ +..|++.+.+...
T Consensus 204 QdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i-vQ~Gtp~eIl~~P 256 (386)
T COG4175 204 QDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI-VQVGTPEEILLNP 256 (386)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE-EEeCCHHHHHcCc
Confidence 7654 45689999999999999999999999999998 4778888776543
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=331.67 Aligned_cols=208 Identities=19% Similarity=0.290 Sum_probs=168.6
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC------------
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------------ 160 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~------------ 160 (652)
-+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 578999999998889999999999999999999999999999999999986 479999998732
Q ss_pred ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHH
Q 006275 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (652)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (652)
..++|++|++.+++ .|+.+|+...... .... .........+.
T Consensus 86 ~~i~~v~q~~~~~~-~tv~~ni~~~~~~---------------~~~~----------------------~~~~~~~~~~~ 127 (251)
T PRK14244 86 AKVGMVFQKPNPFP-KSIYDNVAYGPKL---------------HGLA----------------------KNKKKLDEIVE 127 (251)
T ss_pred hhEEEEecCccccc-CCHHHHHHHHHHh---------------cCCC----------------------CCHHHHHHHHH
Confidence 25999999987765 4999998522100 0000 00011223455
Q ss_pred HHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecC
Q 006275 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (652)
Q Consensus 241 ~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd 315 (652)
++++.+|+.. ...++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .++|||++||+
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~ 207 (251)
T PRK14244 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS 207 (251)
T ss_pred HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 6777788753 235677899999999999999999999999999999999999999999888753 37899999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
++++..+||+|++|++|++. +.|+.+++
T Consensus 208 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 235 (251)
T PRK14244 208 MKQAKKVSDRVAFFQSGRIV-EYNTTQEI 235 (251)
T ss_pred HHHHHhhcCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999984 55665554
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=316.01 Aligned_cols=206 Identities=28% Similarity=0.441 Sum_probs=178.6
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-----------c
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----------N 491 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-----------~ 491 (652)
++++++|++..|+...+|++|||++++||+++|+||||+||||||++|+|+.+|.+|+|.++|.++.. .
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 47999999999999999999999999999999999999999999999999999999999999998742 3
Q ss_pred eecccccccCCCCCCHHHHHHHhhhhc----c-HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAEDW----R-IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~~----~-~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
|++|. ...++.+||.||+..+.... . ...+.++.+.|---.+..+++.++|||||||.++|||||+.+|++|+
T Consensus 82 ~VPeg--R~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLL 159 (237)
T COG0410 82 YVPEG--RRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLL 159 (237)
T ss_pred eCccc--ccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEE
Confidence 45543 46789999999998763211 1 11155566666544577899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcC---c-eEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 567 LDEPTNHLDIPSKEMLEEAISEYK---G-TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||||.||-|.-.+.+.++|++.. + ||++|-++..++.+++||.++|++|+++ +.|+.++..+.
T Consensus 160 LDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~~ 227 (237)
T COG0410 160 LDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLAD 227 (237)
T ss_pred ecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhcC
Confidence 999999999999999999998653 3 9999999999999999999999999998 67988876544
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=331.53 Aligned_cols=207 Identities=21% Similarity=0.293 Sum_probs=164.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC--C---CCcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~--p---~~G~i~~~~~~---------- 160 (652)
.+|+++|++++|+++++|+++||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 35899999999998889999999999999999999999999999999999875 5 58999998742
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..++|++|++.+++ .|+.+|+...+... .. ......+..
T Consensus 84 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~---------------~~-----------------------~~~~~~~~~ 124 (252)
T PRK14255 84 LRKQVGMVFQQPNPFP-FSIYENVIYGLRLA---------------GV-----------------------KDKAVLDEA 124 (252)
T ss_pred hcCeEEEEECCCccCC-CcHHHHHHHHHHHc---------------CC-----------------------CCHHHHHHH
Confidence 25999999988766 79999985321100 00 000001112
Q ss_pred HHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.+.++.+++. .+..++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||+||
T Consensus 125 ~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vs 204 (252)
T PRK14255 125 VETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVT 204 (252)
T ss_pred HHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 23334444432 1345778899999999999999999999999999999999999999999888753 258999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~ 342 (652)
|+++++.++||+|+++++|++. ..|+..
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~ 232 (252)
T PRK14255 205 HSMHQASRISDKTAFFLTGNLI-EFADTK 232 (252)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHH
Confidence 9999999999999999999985 445433
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=334.78 Aligned_cols=207 Identities=27% Similarity=0.397 Sum_probs=172.7
Q ss_pred CCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceecc-----
Q 006275 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL----- 489 (652)
Q Consensus 420 ~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~----- 489 (652)
+++++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 17 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 17 AKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 34568999999999998889999999999999999999999999999999999864 78999999997652
Q ss_pred -------cceecccccccCCCCCCHHHHHHHhhhh----c---cHHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHH
Q 006275 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED----W---RIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARL 552 (652)
Q Consensus 490 -------~~~~~~~~~~~~~~~~tv~e~~~~~~~~----~---~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv 552 (652)
.+|++|+ ..+++ .|+.+|+...... . ....+.+.++.+++. ....++++.+||||||||+
T Consensus 97 ~~~~~~~i~~v~q~--~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 97 VVNLRREIGMVFQK--PNPFP-KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHHHhccEEEEecC--CccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 1244443 23444 5999998764221 1 123456778888774 2346789999999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 553 ~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||++|||++++..+|||+++|++|++.. .|+.++..+
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 252 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE-YDQTEQIFT 252 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 9999999999999999999999999999999999876 3599999999999999999999999999974 577776654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=336.50 Aligned_cols=203 Identities=25% Similarity=0.359 Sum_probs=171.1
Q ss_pred EEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------cc
Q 006275 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~ 491 (652)
+++++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 478999999995 567999999999999999999999999999999999999999999999998652 12
Q ss_pred eecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
|++|+.. ...+..|+.+|+.+....+ ..+.+.++++.+++. ...++++.+|||||||||+|||||+.+|+||
T Consensus 81 ~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 81 IVFQNPE-TQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred EEEEChh-hhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 4444321 1234679999997643221 123467889999994 6788999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||||++||+.++..+.+.|+++ +.|||++|||++++. .|||+++|++|++. ..|+.+++..
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 224 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIV-LEGEPENVLS 224 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEE-EECCHHHHhc
Confidence 999999999999999999999754 469999999999995 59999999999987 4577776543
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=331.20 Aligned_cols=204 Identities=26% Similarity=0.345 Sum_probs=172.4
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~--------- 489 (652)
+++++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 58999999999988999999999999999999999999999999999999974 7999999997652
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhh-----c--cHHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHHHH
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED-----W--RIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~-----~--~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.+++.|. ..+++..|+.+|+...... . ..+.+.++++.+++. .+..++++.+|||||||||+|||
T Consensus 84 ~~~i~~~~q~--~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (258)
T PRK14241 84 RRTIGMVFQR--PNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR 161 (258)
T ss_pred hcceEEEccc--cccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 1234443 3456678999999764321 0 123456788888873 24568899999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEe------CCEEEeecCChhhH
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVK------GSNLQDYAGDYNVC 628 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~------~g~i~~~~g~~~~~ 628 (652)
||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++.++|||+++|+ +|++. ..|++++.
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~-~~~~~~~~ 240 (258)
T PRK14241 162 AIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV-EIDDTEKI 240 (258)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE-ecCCHHHH
Confidence 999999999999999999999999999999876 3599999999999999999999997 79987 45888776
Q ss_pred hh
Q 006275 629 FT 630 (652)
Q Consensus 629 ~~ 630 (652)
+.
T Consensus 241 ~~ 242 (258)
T PRK14241 241 FS 242 (258)
T ss_pred Hh
Confidence 54
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=330.32 Aligned_cols=204 Identities=25% Similarity=0.361 Sum_probs=171.8
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC---CCC--CeeEEEECceecc--------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL---EKP--RGGEVLLGEHNVL-------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~---~~p--~~G~i~~~g~~~~-------- 489 (652)
++|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|.++.
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 479999999999988899999999999999999999999999999999997 455 5899999998752
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhh-------ccHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED-------WRIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~-------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|++|. ..++. .|+.+|+...... .....+.++++.+++.. ...++++.+||||||||++||
T Consensus 82 ~~~~i~~v~q~--~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14245 82 LRKNVGMVFQR--PNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA 158 (250)
T ss_pred HhhheEEEecC--CccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence 1344443 23443 6999999764321 11234678888888742 346788999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++|||+++|++|++. ..|++++..+
T Consensus 159 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~-~~~~~~~~~~ 234 (250)
T PRK14245 159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMV-EYDDTKKIFT 234 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EECCHHHHhc
Confidence 9999999999999999999999999999999875 359999999999999999999999999997 4588887765
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=373.48 Aligned_cols=215 Identities=27% Similarity=0.434 Sum_probs=171.2
Q ss_pred CCceEEEeEEEEeCCe--eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ce
Q 006275 95 SSGVKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MK 162 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~ 162 (652)
...|+++|++|+|+.. ++|+|+||+|++||++||||+||||||||+|+|+|+++|++|+|.++|.+ ..
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred CceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 4569999999999765 59999999999999999999999999999999999999999999999864 36
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
||||+|++.+ ++.|++||+...-.+. ..+++..++..++ ..+.+.++
T Consensus 549 ig~V~Q~~~L-f~gSI~eNi~l~~p~~-----~~e~i~~A~~~ag---------------------------~~~fI~~l 595 (709)
T COG2274 549 VGYVLQDPFL-FSGSIRENIALGNPEA-----TDEEIIEAAQLAG---------------------------AHEFIENL 595 (709)
T ss_pred eeEEcccchh-hcCcHHHHHhcCCCCC-----CHHHHHHHHHHhC---------------------------cHHHHHhc
Confidence 9999999876 7889999996432110 0112222221111 01111111
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (652)
-.|+.+..++ ....||||||||++|||||+++|+|||||||||+||+++++.+.+.|.+ .|+|+|+|||++..+
T Consensus 596 --P~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti- 671 (709)
T COG2274 596 --PMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI- 671 (709)
T ss_pred --cccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh-
Confidence 1244433333 3689999999999999999999999999999999999999999998865 469999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
+.||+|++|++|++ ..+|+.++++..
T Consensus 672 ~~adrIiVl~~Gki-v~~gs~~ell~~ 697 (709)
T COG2274 672 RSADRIIVLDQGKI-VEQGSHEELLAQ 697 (709)
T ss_pred hhccEEEEccCCce-eccCCHHHHHHh
Confidence 56999999999998 588988877654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=372.41 Aligned_cols=212 Identities=21% Similarity=0.346 Sum_probs=177.8
Q ss_pred CCceEEEeEEEEeCC-----------eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---
Q 006275 95 SSGVKLENISKSYKG-----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~-----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--- 160 (652)
.++|+++|+++.|+. .++|++|||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 357999999999961 469999999999999999999999999999999999999999999998742
Q ss_pred ----------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHH
Q 006275 161 ----------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (652)
Q Consensus 161 ----------~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (652)
..|+|++|++ .+++..||.+|+...+.. ..
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~---------------~~----------------------- 432 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV---------------HG----------------------- 432 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH---------------cC-----------------------
Confidence 2599999997 466788999998532100 00
Q ss_pred hCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----c
Q 006275 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (652)
Q Consensus 229 ~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~ 304 (652)
.........++.++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +
T Consensus 433 ~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~ 512 (623)
T PRK10261 433 LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512 (623)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000112235677889999996456789999999999999999999999999999999999999999999998873 3
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 305 ~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.|.|||+||||++++..+||+|++|.+|+++ +.|...++.
T Consensus 513 ~g~tvi~isHdl~~v~~~~dri~vl~~G~iv-~~g~~~~i~ 552 (623)
T PRK10261 513 FGIAYLFISHDMAVVERISHRVAVMYLGQIV-EIGPRRAVF 552 (623)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 5899999999999999999999999999984 667766653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=334.09 Aligned_cols=206 Identities=24% Similarity=0.355 Sum_probs=173.2
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc------
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------ 489 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~------ 489 (652)
..+.|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 34579999999999988999999999999999999999999999999999999974 8999999997752
Q ss_pred ------cceecccccccCCCCCCHHHHHHHhhh--h-----cc-HHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHH
Q 006275 490 ------PNYFEQNQAEALDLDKTVLETVAEAAE--D-----WR-IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARL 552 (652)
Q Consensus 490 ------~~~~~~~~~~~~~~~~tv~e~~~~~~~--~-----~~-~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv 552 (652)
.+|+.|. ..+++ .|+.+|+.+... . .. ...+.++++.+++.. ...++++.+||||||||+
T Consensus 96 ~~~~~~i~~v~q~--~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 96 VELRARVGMVFQK--PNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred HHHhhceEEEecC--CCCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 1234443 23444 599999976431 1 11 234677899999853 245788999999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 553 ~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|++.. .|+.+++..
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 251 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE-VGDTEKMFT 251 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 9999999999999999999999999999999999876 3599999999999999999999999999974 577776653
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=309.55 Aligned_cols=197 Identities=25% Similarity=0.362 Sum_probs=171.1
Q ss_pred CceEEEeEEEEeCCee--eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----ceEEEEec
Q 006275 96 SGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQ 168 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~--vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----~~i~~v~Q 168 (652)
+++.+++++.+|++++ +|+|+|++|.+||.++++||+||||||||++++|+++|+.|+|.+++.+ ..-|.|+|
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 3578899999999877 9999999999999999999999999999999999999999999998653 35799999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+.+.+|+.+|+..++.- ..++..+-...+.+.+..+|+
T Consensus 82 ~~~LlPWl~~~dNvafgL~l---------------------------------------~Gi~k~~R~~~a~q~l~~VgL 122 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQL---------------------------------------RGIEKAQRREIAHQMLALVGL 122 (259)
T ss_pred cCccchhhHHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999998744321 012222234456678888899
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||.|||||+.+|++|+||||+.+||.-+++.+.++| ++.|+.+++||||++++.-+++
T Consensus 123 ~-~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflat 201 (259)
T COG4525 123 E-GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLAT 201 (259)
T ss_pred c-cccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhh
Confidence 7 5668899999999999999999999999999999999999999998887654 6789999999999999999999
Q ss_pred eEEEEcCC
Q 006275 325 KIVETEMG 332 (652)
Q Consensus 325 ~ii~l~~G 332 (652)
++++|..|
T Consensus 202 rLvvlsp~ 209 (259)
T COG4525 202 RLVVLSPG 209 (259)
T ss_pred eeEEecCC
Confidence 99999865
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=329.41 Aligned_cols=205 Identities=25% Similarity=0.371 Sum_probs=172.7
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC--C---CeeEEEECceecc--------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--P---RGGEVLLGEHNVL-------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~--p---~~G~i~~~g~~~~-------- 489 (652)
..|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 35899999999998889999999999999999999999999999999999986 4 6899999997752
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhh---c----cHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~----~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|++|+ ..+++..|+.+|+...... . ....+.++++.+++.. +..++.+.+||||||||++||
T Consensus 83 ~~~~i~~~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 83 IRRRVGMVFQK--PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred hhccEEEEecC--CCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 1234443 3456678999999754211 1 1234677888888743 345788999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|||+++|++|++.. .|+.+++..
T Consensus 161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 236 (252)
T PRK14256 161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE-CGETKKIFT 236 (252)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 9999999999999999999999999999999876 4599999999999999999999999999974 577776643
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=330.40 Aligned_cols=205 Identities=24% Similarity=0.339 Sum_probs=171.2
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC--CC---CeeEEEECceecc--------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KP---RGGEVLLGEHNVL-------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~--~p---~~G~i~~~g~~~~-------- 489 (652)
++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 4799999999999888999999999999999999999999999999999995 46 5999999997652
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhh---c----cHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~----~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|++|+ ..++ ..|+.+|+...... . ....+.++++.+++.. +..++++.+|||||||||+||
T Consensus 84 ~~~~i~~v~q~--~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14239 84 LRKEIGMVFQQ--PNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160 (252)
T ss_pred hhhcEEEEecC--CccC-cCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence 1244443 2344 37999999764211 1 1234566788888632 346889999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+|||+++|++|++.. .|+.++..+.
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~~ 237 (252)
T PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE-YNDTKQMFMN 237 (252)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHhC
Confidence 9999999999999999999999999999999875 3699999999999999999999999999974 5777776543
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=326.99 Aligned_cols=200 Identities=29% Similarity=0.505 Sum_probs=154.7
Q ss_pred ceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEE
Q 006275 97 GVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~ 164 (652)
.|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 3899999999975 569999999999999999999999999999999999999999999998742 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+++ .|+.||+....... . . ..+...++. . .+. ++++
T Consensus 82 ~~~q~~~~~~-~tv~e~l~~~~~~~-~-~---~~~~~~l~~------------------------~---~l~----~~~~ 124 (220)
T cd03245 82 YVPQDVTLFY-GTLRDNITLGAPLA-D-D---ERILRAAEL------------------------A---GVT----DFVN 124 (220)
T ss_pred EeCCCCcccc-chHHHHhhcCCCCC-C-H---HHHHHHHHH------------------------c---CcH----HHHH
Confidence 9999987754 69999975321000 0 0 000000000 0 001 1111
Q ss_pred hc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006275 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (652)
.+ |+.+. ..+.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .++|||++||+++++
T Consensus 125 ~~~~~~~~~-~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~- 202 (220)
T cd03245 125 KHPNGLDLQ-IGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL- 202 (220)
T ss_pred hccccccce-ecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-
Confidence 11 22211 2334689999999999999999999999999999999999999999998854 247999999999987
Q ss_pred hhcCeEEEEcCCeEE
Q 006275 321 QLCTKIVETEMGVSR 335 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~ 335 (652)
.+||+++++++|++.
T Consensus 203 ~~~d~v~~l~~g~i~ 217 (220)
T cd03245 203 DLVDRIIVMDSGRIV 217 (220)
T ss_pred HhCCEEEEEeCCeEe
Confidence 799999999999874
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=330.23 Aligned_cols=209 Identities=22% Similarity=0.279 Sum_probs=168.0
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC--C---CCcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~--p---~~G~i~~~~~~---------- 160 (652)
++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+ | ++|+|.++|.+
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 46999999999998889999999999999999999999999999999999975 3 48999988632
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..|+|++|++.++. .||+||+...... .. ..+....+..
T Consensus 85 ~~~~i~~~~q~~~~~~-~tv~eni~~~~~~--------------~~------------------------~~~~~~~~~~ 125 (253)
T PRK14261 85 LRRKIGMVFQRPNPFP-KSIYENVAYGPRI--------------HG------------------------EKNKKTLDTI 125 (253)
T ss_pred hhceEEEEecCCccCc-ccHHHHHHhhHHh--------------cC------------------------CCCHHHHHHH
Confidence 24999999987765 5999998522100 00 0000011233
Q ss_pred HHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.++++.+++.. ...++.+.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .++|||++|
T Consensus 126 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~s 205 (253)
T PRK14261 126 VEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVT 205 (253)
T ss_pred HHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEE
Confidence 444555555531 235778899999999999999999999999999999999999999999888753 368999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|+++++..+||++++|++|++. ..|+.+++
T Consensus 206 h~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 235 (253)
T PRK14261 206 HNMQQAARVSDYTGFMYLGKLI-EFDKTTQI 235 (253)
T ss_pred cCHHHHHhhCCEEEEEECCEEE-EcCCHHHH
Confidence 9999999999999999999984 56766554
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=331.39 Aligned_cols=210 Identities=20% Similarity=0.260 Sum_probs=170.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCC-----CcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-----~G~i~~~~~~---------- 160 (652)
+.|+++|++++|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 3699999999998878999999999999999999999999999999999999985 8999887632
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..++|++|++.+++ .|+.||+...... ... .........
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~ 126 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKI---------------VGW-----------------------RPKLEIDDI 126 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHh---------------cCC-----------------------CcHHHHHHH
Confidence 24999999987765 8999998532100 000 000011233
Q ss_pred HHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEE
Q 006275 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVI 311 (652)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIi 311 (652)
+.++++.+|+.. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .+.|||+
T Consensus 127 ~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiii 206 (261)
T PRK14258 127 VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206 (261)
T ss_pred HHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 455666666531 346788899999999999999999999999999999999999999999887753 4899999
Q ss_pred EecCHHHHHhhcCeEEEEcC-----CeEEEecCChHHHH
Q 006275 312 ISHDRAFLDQLCTKIVETEM-----GVSRTYEGNYSQYV 345 (652)
Q Consensus 312 vsHd~~~l~~~~d~ii~l~~-----G~~~~~~g~~~~~~ 345 (652)
|||+++++..+||+|++|++ |++ ...|+.+++.
T Consensus 207 vsH~~~~i~~~~d~i~~l~~~~~~~G~i-~~~~~~~~~~ 244 (261)
T PRK14258 207 VSHNLHQVSRLSDFTAFFKGNENRIGQL-VEFGLTKKIF 244 (261)
T ss_pred EECCHHHHHHhcCEEEEEccCCCcCceE-EEeCCHHHHH
Confidence 99999999999999999999 887 4667766653
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=331.52 Aligned_cols=214 Identities=20% Similarity=0.278 Sum_probs=171.9
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC--CCCCCcEEEECCCC-----------ce
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSN-----------MK 162 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~--~~p~~G~i~~~~~~-----------~~ 162 (652)
++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.+ ..
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 369999999999888899999999999999999999999999999999998 58999999997632 14
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
++|++|++.+++..|+.+|+...+.... ..... ..........++.++
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~---------------------~~~~~~~~~~~~~~~ 133 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKR-----------KFQGL---------------------PELDPLEFLEIINEK 133 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhh-----------ccccc---------------------ccccHHHHHHHHHHH
Confidence 8899999888777899888743211000 00000 000111223456677
Q ss_pred hhhcCCCcccccCCCC-CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~-~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~ 318 (652)
++.+|+.....++++. .|||||||||+|||||+.+|+||||||||+|||+.++.++.++|+ +.|+|||++||++++
T Consensus 134 l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 134 LKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred HHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 8888986445677776 599999999999999999999999999999999999999988875 358999999999999
Q ss_pred HHhh-cCeEEEEcCCeEEEecCChH
Q 006275 319 LDQL-CTKIVETEMGVSRTYEGNYS 342 (652)
Q Consensus 319 l~~~-~d~ii~l~~G~~~~~~g~~~ 342 (652)
+..+ ||+++++++|++. +.|+.+
T Consensus 214 ~~~~~~d~i~~l~~G~i~-~~~~~~ 237 (252)
T CHL00131 214 LDYIKPDYVHVMQNGKII-KTGDAE 237 (252)
T ss_pred HHhhhCCEEEEEeCCEEE-EecChh
Confidence 9877 8999999999984 666644
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=323.36 Aligned_cols=192 Identities=23% Similarity=0.404 Sum_probs=166.7
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------ccee
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNYF 493 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~~~ 493 (652)
++++|+++|++++|+++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~ 87 (214)
T PRK13543 8 APPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYL 87 (214)
T ss_pred CcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEe
Confidence 446899999999998888999999999999999999999999999999999999999999999997653 2344
Q ss_pred cccccccCCCCCCHHHHHHHhhhh---ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 494 EQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
.|+ ..+++..|+.+|+...... .....+.++++.+++. +..++++.+||||||||++||||++.+|++||||||
T Consensus 88 ~q~--~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (214)
T PRK13543 88 GHL--PGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164 (214)
T ss_pred ecC--cccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 443 3455667999998764321 1234467889999995 567999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeC
Q 006275 571 TNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKG 615 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~ 615 (652)
|++||+.+++.+.+.|.++ +.|||++|||++++.++||++++++.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 165 YANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999765 56999999999999999999999864
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=335.77 Aligned_cols=203 Identities=28% Similarity=0.436 Sum_probs=173.3
Q ss_pred cEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------c
Q 006275 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (652)
Q Consensus 423 ~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (652)
++|+++||++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 47999999999974 56999999999999999999999999999999999999999999999998763 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+|++|+.. .+.+..|+.+|+....... ....+.++++.+|+. ...++++.+|||||||||+|||||+.+|+|
T Consensus 84 ~~~~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 84 GMVFQNPD-NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred EEEEeCHH-HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 34555431 2455689999997643211 123478889999995 678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
|||||||+|||+.++..+.++|+++ +.|||+||||++++.. |||+++|++|++. +.|+.++..
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEIL-EEGTPEEIF 228 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999764 4599999999999975 9999999999987 457766543
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=341.47 Aligned_cols=211 Identities=21% Similarity=0.317 Sum_probs=167.2
Q ss_pred CCceEEEeEEEEeC--CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC-------
Q 006275 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~------- 160 (652)
...|+++|++++|. ..++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35799999999995 3569999999999999999999999999999999999986 579999988753
Q ss_pred -----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcH
Q 006275 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (652)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (652)
.+++|++|+|+++ +.|+++|+..... .. .. .+. ...
T Consensus 158 ~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~--~~-------------~~-~~~----------------------~~~ 198 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPF-EMSIFDNVAYGPR--NN-------------GI-NDR----------------------KIL 198 (329)
T ss_pred hHhhhccEEEEecCCccC-CCcHHHHHHhHHH--hc-------------CC-ChH----------------------HHH
Confidence 2599999999875 6899999862210 00 00 000 000
Q ss_pred HHHHHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 006275 236 DAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (652)
Q Consensus 236 ~~~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvI 310 (652)
+..+..+++.+++.. ...++.+.+|||||||||+|||||+.+|+||||||||++||+.+..++.+.|++ .++|||
T Consensus 199 ~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii 278 (329)
T PRK14257 199 EKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSII 278 (329)
T ss_pred HHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEE
Confidence 111223334444321 234677899999999999999999999999999999999999999999887753 368999
Q ss_pred EEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 311 ivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+|||+++++.++||||++|++|++. ..|++.++.
T Consensus 279 ~iTH~l~~i~~~~Driivl~~G~i~-e~g~~~~l~ 312 (329)
T PRK14257 279 IVTHSMAQAQRISDETVFFYQGWIE-EAGETKTIF 312 (329)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999984 668877654
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=332.62 Aligned_cols=208 Identities=18% Similarity=0.274 Sum_probs=165.2
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC----------
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN---------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~---------- 160 (652)
++|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 46999999999998889999999999999999999999999999999999976 489999998742
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..|+|++|++.+++ .|+.+|+....... . .. ....+.
T Consensus 89 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-----------~~----------------------------~~~~~~ 127 (264)
T PRK14243 89 VRRRIGMVFQKPNPFP-KSIYDNIAYGARIN-G-----------YK----------------------------GDMDEL 127 (264)
T ss_pred HhhhEEEEccCCcccc-ccHHHHHHhhhhhc-C-----------cc----------------------------hHHHHH
Confidence 24999999987755 59999985321100 0 00 000111
Q ss_pred HHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+.++++.+++. ....++.+.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++|
T Consensus 128 ~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vt 207 (264)
T PRK14243 128 VERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVT 207 (264)
T ss_pred HHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 22233333332 1235677899999999999999999999999999999999999999999988753 258999999
Q ss_pred cCHHHHHhhcCeEEEEc---------CCeEEEecCChHHHH
Q 006275 314 HDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQYV 345 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~---------~G~~~~~~g~~~~~~ 345 (652)
|+++++.++||+|++|+ +|++ ...|...++.
T Consensus 208 H~~~~~~~~~d~v~~l~~~~~~~~~~~g~i-~~~~~~~~~~ 247 (264)
T PRK14243 208 HNMQQAARVSDMTAFFNVELTEGGGRYGYL-VEFDRTEKIF 247 (264)
T ss_pred cCHHHHHHhCCEEEEEecccccccccCceE-EEeCCHHHHH
Confidence 99999999999999998 6877 4667665553
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=367.28 Aligned_cols=206 Identities=25% Similarity=0.404 Sum_probs=178.1
Q ss_pred CCcEEEEEeeeeEeCCe--eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 421 GRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~--~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
-.+.|+++||+|+|+.. ++|+|+||+|++||++||+|+||||||||+|+|.|+++|++|+|.+||.++.
T Consensus 468 ~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 468 LQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred cCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 34569999999999854 6999999999999999999999999999999999999999999999999863
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhh----------ccCcCCCCHHHHHHHHHHHHH
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML----------DRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~----------~~~~~~LSgGqrqrv~LAral 558 (652)
.+++.|+ ...++.|+.||+..+......+++.+++...|...... .....+||||||||++||||+
T Consensus 548 ~ig~V~Q~---~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL 624 (709)
T COG2274 548 QVGYVLQD---PFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL 624 (709)
T ss_pred heeEEccc---chhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh
Confidence 2455554 35678999999999877777777777777666643221 234458999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+++|+|||||||||+||+++++.+.+.|.+.. .|+|+|||++.++.. ||||++|++|+|+ .+|+.++.++.
T Consensus 625 l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~-adrIiVl~~Gkiv-~~gs~~ell~~ 697 (709)
T COG2274 625 LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS-ADRIIVLDQGKIV-EQGSHEELLAQ 697 (709)
T ss_pred ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh-ccEEEEccCCcee-ccCCHHHHHHh
Confidence 99999999999999999999999999999875 799999999999976 9999999999998 47998887765
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=335.81 Aligned_cols=210 Identities=23% Similarity=0.357 Sum_probs=168.5
Q ss_pred ceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------ceEEEEec
Q 006275 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------~~i~~v~Q 168 (652)
.|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 589999999996 5779999999999999999999999999999999999999999999998743 25999999
Q ss_pred cCccC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 169 EFEVS--MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 169 ~~~~~--~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
++.+. ...++.+++.......... + .......+.++.++++.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~----------~-------------------------~~~~~~~~~~~~~~l~~~ 130 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGW----------L-------------------------RRAKKRDRQIVTAALARV 130 (272)
T ss_pred ccccccCCCcchhhheeccccccccc----------c-------------------------cCCCHHHHHHHHHHHHHc
Confidence 97543 2346777764211000000 0 000011233456678888
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (652)
|+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|+ +.|+|||++||+++++..+|
T Consensus 131 gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~ 209 (272)
T PRK15056 131 DMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC 209 (272)
T ss_pred CCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 886 56788999999999999999999999999999999999999999999998874 35889999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~ 344 (652)
|+++.+ +|++ .+.|+.+++
T Consensus 210 d~v~~~-~G~i-~~~g~~~~~ 228 (272)
T PRK15056 210 DYTVMV-KGTV-LASGPTETT 228 (272)
T ss_pred CEEEEE-CCEE-EeecCHHhc
Confidence 999877 7887 456765553
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=330.81 Aligned_cols=208 Identities=25% Similarity=0.422 Sum_probs=163.8
Q ss_pred eEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 98 i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
|+++|++++|++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999964 569999999999999999999999999999999999999999999998743 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.++ ..||.+|+...... ... +.+...++ ...+.++++.
T Consensus 81 ~~q~~~~~-~~tv~~nl~~~~~~-~~~----~~~~~~~~-------------------------------~~~~~~~l~~ 123 (237)
T cd03252 81 VLQENVLF-NRSIRDNIALADPG-MSM----ERVIEAAK-------------------------------LAGAHDFISE 123 (237)
T ss_pred EcCCchhc-cchHHHHhhccCCC-CCH----HHHHHHHH-------------------------------HcCcHHHHHh
Confidence 99998764 57999998531100 000 00000000 0011223333
Q ss_pred c--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006275 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (652)
+ |+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|+|||++||+++++.
T Consensus 124 l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~- 201 (237)
T cd03252 124 LPEGYD-TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK- 201 (237)
T ss_pred Cccccc-chhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-
Confidence 3 443 345678899999999999999999999999999999999999999999888753 4889999999999995
Q ss_pred hcCeEEEEcCCeEEEecCChHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.||+++++++|++. +.|+..++.
T Consensus 202 ~~d~v~~l~~G~i~-~~~~~~~~~ 224 (237)
T cd03252 202 NADRIIVMEKGRIV-EQGSHDELL 224 (237)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHH
Confidence 69999999999984 667766554
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=325.46 Aligned_cols=202 Identities=29% Similarity=0.447 Sum_probs=173.6
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceeccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~~ 496 (652)
|+++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++. .++.+|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 46899999999889999999999999999999999999999999999999999999999998652 2344443
Q ss_pred ccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
..++...|+.+|+...... .....+..+++.+++. +..++.+.+||+|||||++|||||+.+|++||||||
T Consensus 81 --~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (232)
T cd03300 81 --YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157 (232)
T ss_pred --cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455578999998754321 1133567889999995 678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|+|||+.++..+.++|+++ +.|||++||+++++..+|||+++|++|++.. .|+.++...
T Consensus 158 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~-~~~~~~~~~ 220 (232)
T cd03300 158 LGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ-IGTPEEIYE 220 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHHHh
Confidence 9999999999999999764 4699999999999999999999999999974 566665543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=332.35 Aligned_cols=207 Identities=24% Similarity=0.331 Sum_probs=172.1
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceecc------
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------ 489 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~------ 489 (652)
+..+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 10 ~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 10 KNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 3457999999999998899999999999999999999999999999999999987 68999999997652
Q ss_pred ------cceecccccccCCCCCCHHHHHHHhhhhc-----cHHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHHH
Q 006275 490 ------PNYFEQNQAEALDLDKTVLETVAEAAEDW-----RIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ------~~~~~~~~~~~~~~~~tv~e~~~~~~~~~-----~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|++|.. .+++ .|+.+|+....... ..+.+.++++.+++. ....++++.+|||||||||+||
T Consensus 90 ~~~~~~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 90 VEVRRRIGMVFQQP--NPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred HHHhhceEEEccCC--ccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 23444432 3444 59999997643211 123456678887763 2356889999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeC-----------CEEEeec
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKG-----------SNLQDYA 622 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~-----------g~i~~~~ 622 (652)
|||+.+|++|||||||++||+.++..+.++|+++. .|||+||||++++..+||++++|++ |+++ ..
T Consensus 167 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~-~~ 245 (269)
T PRK14259 167 RTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV-EF 245 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE-Ee
Confidence 99999999999999999999999999999998763 5999999999999999999999996 4566 45
Q ss_pred CChhhHhhh
Q 006275 623 GDYNVCFTS 631 (652)
Q Consensus 623 g~~~~~~~~ 631 (652)
|++.+..+.
T Consensus 246 ~~~~~~~~~ 254 (269)
T PRK14259 246 NETKKIFNS 254 (269)
T ss_pred CCHHHHHhC
Confidence 888777653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=336.34 Aligned_cols=205 Identities=25% Similarity=0.390 Sum_probs=173.1
Q ss_pred cEEEEEeeeeEeCC------eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------
Q 006275 423 SVVTIKNLEFGYED------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------- 489 (652)
++|+++|++++|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 47999999999963 46999999999999999999999999999999999999999999999997752
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHc
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~ 559 (652)
.+|++|+....+ ...++.+|+.+.... .....+.++++.+|+. ...++++.+||||||||++|||||+
T Consensus 83 ~~~~i~~v~q~~~~~~-~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 83 IRNKAGMVFQNPDNQI-VATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HhhheEEEecChhhhh-ccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHH
Confidence 124444432122 346899999765321 1124577889999994 6789999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++.. |||+++|++|++. ..|+++++...
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~~~~ 234 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVV-MEGTPKEIFKE 234 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEE-EecCHHHHhcC
Confidence 999999999999999999999999999864 4599999999999986 9999999999987 45777776543
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=330.23 Aligned_cols=206 Identities=21% Similarity=0.303 Sum_probs=172.8
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC----CeeEEEECceecc--------cc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP----RGGEVLLGEHNVL--------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p----~~G~i~~~g~~~~--------~~ 491 (652)
+|+++|++++| ++++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++. .+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 58999999999 67899999999999999999999999999999999999999 9999999997752 23
Q ss_pred eecccccccCCCCCCHHHHHHHhhh----hccHHHHHHHHhhCCCChh--hhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKAD--MLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~----~~~~~~~~~~L~~~~l~~~--~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
|++|.....+.+..++.+++..... ....+.+.++++.+++... ..++++.+|||||||||+|||||+.+|+||
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL 162 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFI 162 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 5555432223445688887754211 1223567889999998531 468899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||||++||+.+++.+.+.|+++ +.|||+|||+++++..+|||+++|++|++. ..|+.+++.+.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~~ 231 (254)
T PRK10418 163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV-EQGDVETLFNA 231 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHhhC
Confidence 999999999999999999998764 469999999999999999999999999997 46777776543
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=329.98 Aligned_cols=207 Identities=27% Similarity=0.440 Sum_probs=164.5
Q ss_pred eEEEeEEEEeCCe--eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 98 i~v~~ls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
|+++|++++|++. ++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999765 79999999999999999999999999999999999999999999998742 24999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.++ ..|++||+....... . . ..+...++ ...+.++++.
T Consensus 81 ~~q~~~~~-~~tv~enl~~~~~~~-~-~---~~~~~~~~-------------------------------~~~~~~~~~~ 123 (234)
T cd03251 81 VSQDVFLF-NDTVAENIAYGRPGA-T-R---EEVEEAAR-------------------------------AANAHEFIME 123 (234)
T ss_pred eCCCCeec-cccHHHHhhccCCCC-C-H---HHHHHHHH-------------------------------HcCcHHHHHh
Confidence 99998775 469999985321100 0 0 00000000 0012233444
Q ss_pred c--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006275 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (652)
+ |+. ...++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++ .+.|||++||+++++..
T Consensus 124 l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 124 LPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred cccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 4 444 346777899999999999999999999999999999999999999999988753 48899999999999976
Q ss_pred hcCeEEEEcCCeEEEecCChHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||+|+++++|++. ..|+.+++
T Consensus 203 -~d~v~~l~~G~i~-~~~~~~~~ 223 (234)
T cd03251 203 -ADRIVVLEDGKIV-ERGTHEEL 223 (234)
T ss_pred -CCEEEEecCCeEe-eeCCHHHH
Confidence 9999999999984 56776554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=329.73 Aligned_cols=200 Identities=28% Similarity=0.448 Sum_probs=168.9
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCC
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 502 (652)
++|+++||++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ...+|++|+. .+.
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-~~i~~v~q~~--~~~ 79 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-LRIGYVPQKL--YLD 79 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-cCEEEecccc--ccc
Confidence 3699999999999888999999999999999999999999999999999999999999999874 2355666653 222
Q ss_pred C--CCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHH
Q 006275 503 L--DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580 (652)
Q Consensus 503 ~--~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~ 580 (652)
. ..++.+++.... .....++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.
T Consensus 80 ~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 157 (251)
T PRK09544 80 TTLPLTVNRFLRLRP-GTKKEDILPALKRVQAG-HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157 (251)
T ss_pred cccChhHHHHHhccc-cccHHHHHHHHHHcCCh-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 2 246777764321 12345578889999984 6678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 581 MLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 581 ~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
.+.+.|.++ +.|||+||||++++..+||++++|++ ++. ..|+++++.
T Consensus 158 ~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~-~~g~~~~~~ 208 (251)
T PRK09544 158 ALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC-CSGTPEVVS 208 (251)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE-eeCCHHHHh
Confidence 999998754 56999999999999999999999975 665 457776654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=328.38 Aligned_cols=203 Identities=26% Similarity=0.393 Sum_probs=170.9
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceecc--------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL-------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~-------- 489 (652)
.+|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 36999999999998899999999999999999999999999999999999997 47999999998652
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhh-------ccHHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED-------WRIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~-------~~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|+.|+ ..++ ..|+.+|+...... .....+.++++.+++. ....++++.+||||||||++||
T Consensus 83 ~~~~i~~~~q~--~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 83 LRKEVGMVFQQ--PTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred hhccEEEEecC--CccC-CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 1234443 2333 47999999764321 1123466788888873 2346789999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
|||+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++..+|||+++|++|++.. .|+.++..
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 234 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE-AGPTEEMF 234 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999876 4699999999999999999999999999975 47776654
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=328.39 Aligned_cols=205 Identities=25% Similarity=0.346 Sum_probs=172.8
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc-------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~------- 489 (652)
+++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 3579999999999888899999999999999999999999999999999999875 7999999998752
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhhhc---c----HHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAEDW---R----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~~~---~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~L 554 (652)
.+|++|+ ..+++ .|+.+|+.+..... . ...+.++++.+++. ....++++.+||+|||||++|
T Consensus 82 ~~~~~i~~~~q~--~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 158 (251)
T PRK14270 82 ELRKRVGMVFQK--PNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCI 158 (251)
T ss_pred HHHhheEEEecC--CCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 1344444 23444 89999997643211 1 23456788888873 235688999999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+|||+++|++|++.. .|+.++...
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 235 (251)
T PRK14270 159 ARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE-FNKTEKIFL 235 (251)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE-eCCHHHHhc
Confidence 99999999999999999999999999999999876 3699999999999999999999999999974 577776543
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=329.34 Aligned_cols=207 Identities=27% Similarity=0.385 Sum_probs=173.5
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC--C---CeeEEEECceecc------
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--P---RGGEVLLGEHNVL------ 489 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~--p---~~G~i~~~g~~~~------ 489 (652)
..++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.
T Consensus 9 ~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 9 KQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred CCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 3557999999999998899999999999999999999999999999999999997 3 5999999998752
Q ss_pred ------cceecccccccCCCCCCHHHHHHHhhhhc---c----HHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHH
Q 006275 490 ------PNYFEQNQAEALDLDKTVLETVAEAAEDW---R----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLA 553 (652)
Q Consensus 490 ------~~~~~~~~~~~~~~~~tv~e~~~~~~~~~---~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~ 553 (652)
.+|++|+ ..+++ .|+.+|+.+..... . ...+.++++.+++.. +..++++.+||||||||++
T Consensus 89 ~~~~~~i~~v~q~--~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 89 VELRKNIGMVFQK--GNPFP-QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred HHHhhceEEEecC--Ccccc-cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 1244443 23444 49999997643211 1 123566788888742 3468899999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 554 LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.++|||+++|++|++.. .|+.+++...
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~~ 244 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE-CNDTNKMFSN 244 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-ECCHHHHhhC
Confidence 999999999999999999999999999999999876 3599999999999999999999999999974 5888877543
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=320.42 Aligned_cols=187 Identities=27% Similarity=0.428 Sum_probs=163.1
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc---------ceec
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP---------NYFE 494 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~---------~~~~ 494 (652)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 4889999999998899999999999999999999999999999999999999999999999977521 2333
Q ss_pred ccccccCCCCCCHHHHHHHhhhh---ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 495 QNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
+ ...+.+..|+.+|+...... .....+.++++.+|+. +..++++.+||||||||++|||||+.+|++|||||||
T Consensus 81 ~--~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 81 H--QPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred C--ccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3 23456678999999765432 2345678899999994 5678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEE
Q 006275 572 NHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV 613 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l 613 (652)
++||+.++..+.++|+++ +.|||+||||++++..+.+|++.+
T Consensus 158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999865 469999999999999877888877
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=331.36 Aligned_cols=209 Identities=19% Similarity=0.264 Sum_probs=166.1
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~--------- 160 (652)
.++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 18 ~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred CceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 4579999999999988899999999999999999999999999999999999863 68999988732
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..|+|++|++.++. .|+.+|+....... . .. ...+.
T Consensus 98 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~-~-----------~~----------------------------~~~~~ 136 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFP-KSIYENIAFAPRAN-G-----------YK----------------------------GNLDE 136 (274)
T ss_pred HHhhcEEEEccCCcccc-ccHHHHHHhHHHhc-C-----------ch----------------------------HHHHH
Confidence 25999999987754 59999985321000 0 00 00011
Q ss_pred HHHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
.+.++++.+++. .+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .+.|||++
T Consensus 137 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~ 216 (274)
T PRK14265 137 LVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMV 216 (274)
T ss_pred HHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 122233343431 1345678899999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEc---------CCeEEEecCChHHHH
Q 006275 313 SHDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQYV 345 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~---------~G~~~~~~g~~~~~~ 345 (652)
|||++++..+||++++|+ +|++ ...|+..++.
T Consensus 217 sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~-~~~g~~~~~~ 257 (274)
T PRK14265 217 THNMQQASRVADWTAFFNTEIDEYGKRRGKL-VEFSPTEQMF 257 (274)
T ss_pred eCCHHHHHHhCCEEEEEecccccccccCceE-EEeCCHHHHH
Confidence 999999999999999997 6887 4667766553
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=332.26 Aligned_cols=207 Identities=27% Similarity=0.403 Sum_probs=173.8
Q ss_pred CCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceecc-----
Q 006275 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL----- 489 (652)
Q Consensus 420 ~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~----- 489 (652)
.++++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 35 ~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 46678999999999988899999999999999999999999999999999999987 68999999997652
Q ss_pred -------cceecccccccCCCCCCHHHHHHHhhhh-----ccHHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHH
Q 006275 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 -------~~~~~~~~~~~~~~~~tv~e~~~~~~~~-----~~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~L 554 (652)
.+|++|+. .+++ .|+.+|+...... ....++.++++.+++. .+..++++.+|||||||||+|
T Consensus 115 ~~~~~~~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 115 PVALRRRIGMVFQKP--NPFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCI 191 (285)
T ss_pred hHhhhccEEEEecCC--ccCc-CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHH
Confidence 13444442 3444 4999999764321 1134577888888874 235688999999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEE-EEeCCEEEeecCChhhHhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVV-EVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi-~l~~g~i~~~~g~~~~~~~ 630 (652)
||||+.+|+||||||||++||+.++..+.++|+++ ..|||+||||++++..+|||++ +|++|++.. .|++++...
T Consensus 192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~-~g~~~~~~~ 269 (285)
T PRK14254 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE-FDDTDKIFE 269 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE-eCCHHHHHh
Confidence 99999999999999999999999999999999876 3599999999999999999975 569999974 577766543
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=321.84 Aligned_cols=189 Identities=31% Similarity=0.419 Sum_probs=163.0
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------c
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------P 490 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~ 490 (652)
+++ ||+++|+++.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 445 89999998766 99999999 999999999999999999999999999999999997642 1
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
+|++|. ..+++..|+.+|+...... ....++.++++.+++. ...++++.+||||||||++|||||+.+|++||
T Consensus 78 ~~~~q~--~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 154 (214)
T cd03297 78 GLVFQQ--YALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELLL 154 (214)
T ss_pred EEEecC--CccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 234433 3456678999998764321 1234577899999995 56789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 567 LDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
|||||+|||+.+++.+.++|+++ +.|||++|||++++..+||++++|++|++..
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999998764 4699999999999999999999999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=332.29 Aligned_cols=202 Identities=26% Similarity=0.364 Sum_probs=171.9
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC--------eeEEEECceecc------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--------GGEVLLGEHNVL------ 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~--------~G~i~~~g~~~~------ 489 (652)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 489999999999889999999999999999999999999999999999999998 999999997652
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhh----------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|++|.. ...+..|+.+|+...... .....+.++++.+++. ...++++.+|||||||||+||
T Consensus 81 ~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 81 LARLRAVLPQAA--QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-ALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHhhcEEecccC--CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 13444432 234568999999764210 1123467889999995 567899999999999999999
Q ss_pred HHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeec
Q 006275 556 KFMV---------KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYA 622 (652)
Q Consensus 556 ral~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~ 622 (652)
|||+ .+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|++.. .
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~-~ 236 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA-H 236 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE-e
Confidence 9999 599999999999999999999999999764 4699999999999999999999999999974 5
Q ss_pred CChhhHh
Q 006275 623 GDYNVCF 629 (652)
Q Consensus 623 g~~~~~~ 629 (652)
|+.++..
T Consensus 237 g~~~~~~ 243 (272)
T PRK13547 237 GAPADVL 243 (272)
T ss_pred cCHHHHc
Confidence 7766553
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=328.29 Aligned_cols=209 Identities=26% Similarity=0.392 Sum_probs=163.6
Q ss_pred ceEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
.|+++|++++|++ +++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 3899999999975 469999999999999999999999999999999999999999999998742 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.++. .|++||+....... . ...+...++. ..+.+.++.
T Consensus 82 ~~q~~~~~~-~tv~~~~~~~~~~~-~----~~~~~~~~~~-------------------------------~~l~~~~~~ 124 (229)
T cd03254 82 VLQDTFLFS-GTIMENIRLGRPNA-T----DEEVIEAAKE-------------------------------AGAHDFIMK 124 (229)
T ss_pred ecCCchhhh-hHHHHHHhccCCCC-C----HHHHHHHHHH-------------------------------hChHHHHHh
Confidence 999987755 49999985321100 0 0000000000 011122333
Q ss_pred c--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006275 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (652)
+ |+. ...++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||+|||+++++.
T Consensus 125 ~~~~~~-~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~- 202 (229)
T cd03254 125 LPNGYD-TVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK- 202 (229)
T ss_pred Cccccc-CHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-
Confidence 2 443 235667899999999999999999999999999999999999999999888753 4789999999999996
Q ss_pred hcCeEEEEcCCeEEEecCChHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.||++++|++|++. +.|+++++.
T Consensus 203 ~~d~i~~l~~g~~~-~~~~~~~~~ 225 (229)
T cd03254 203 NADKILVLDDGKII-EEGTHDELL 225 (229)
T ss_pred hCCEEEEEeCCeEE-EeCCHHHHH
Confidence 59999999999984 567765543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=327.62 Aligned_cols=203 Identities=26% Similarity=0.361 Sum_probs=171.8
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC---CCeeEEEECceecc----------c
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK---PRGGEVLLGEHNVL----------P 490 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~----------~ 490 (652)
+++++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. .
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4889999999998899999999999999999999999999999999999984 79999999998763 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh--------ccHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHHHHHc
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED--------WRIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~--------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LAral~ 559 (652)
+|++|. ..+++ .|+.+|+...... ....++.++++.+++.. +..++++.+||||||||++|||||+
T Consensus 82 ~~~~q~--~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 82 GMVFQQ--PNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred EEEecC--Ccccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 345544 33443 6999999764211 11234678899999852 3467889999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.++...
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 230 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE-FGESKEFFE 230 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999865 5699999999999999999999999999984 477666543
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=312.11 Aligned_cols=160 Identities=36% Similarity=0.580 Sum_probs=145.8
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEec
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~Q 168 (652)
++++|++++|++.++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 478999999988889999999999999999999999999999999999999999999998742 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++..|+.||+
T Consensus 81 ~~~~~~~~tv~~~~------------------------------------------------------------------ 94 (173)
T cd03230 81 EPSLYENLTVRENL------------------------------------------------------------------ 94 (173)
T ss_pred CCccccCCcHHHHh------------------------------------------------------------------
Confidence 98876667877663
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCe
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~ 325 (652)
. |||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|+|++||+.+++..+||+
T Consensus 95 --~--------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~ 164 (173)
T cd03230 95 --K--------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR 164 (173)
T ss_pred --h--------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 0 899999999999999999999999999999999999999888743 478999999999999999999
Q ss_pred EEEEcCCe
Q 006275 326 IVETEMGV 333 (652)
Q Consensus 326 ii~l~~G~ 333 (652)
++++++|+
T Consensus 165 i~~l~~g~ 172 (173)
T cd03230 165 VAILNNGR 172 (173)
T ss_pred EEEEeCCC
Confidence 99999885
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=316.77 Aligned_cols=204 Identities=25% Similarity=0.391 Sum_probs=182.5
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------cceecccc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------PNYFEQNQ 497 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------~~~~~~~~ 497 (652)
++++++|+++|+++.+++|+||.+++|++.|++|||||||||++|+|+|+++|++|+|.++|.++. .+|.+..
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE- 80 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE- 80 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh-
Confidence 489999999999999999999999999999999999999999999999999999999999998763 4666643
Q ss_pred cccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 498 AEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 498 ~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
..+.+.+||.|.+.+.+... ...++..+|+++++. ....+++.+||-|++|++.+..+++++|+++|||||+
T Consensus 81 -RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~-~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 81 -RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred -hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc-ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 46889999999998865432 234578899999995 5678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 572 NHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||||.+.+.+.+.+.++ +.|||++||.|+-++++||+++.|++|+.+ .+|+...+-.+
T Consensus 159 SGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V-~~G~v~~ir~~ 220 (300)
T COG4152 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV-LYGTVEDIRRS 220 (300)
T ss_pred cCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE-EeccHHHHHHh
Confidence 999999999999999865 469999999999999999999999999987 56888876553
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=329.28 Aligned_cols=210 Identities=22% Similarity=0.330 Sum_probs=166.9
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~--------- 160 (652)
...|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 4569999999999988899999999999999999999999999999999999875 79999987532
Q ss_pred -----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcH
Q 006275 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (652)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (652)
..++|++|++.++.. |++||+...+... .. . .....
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~-~~-----------~--------------------------~~~~~ 134 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR-GV-----------K--------------------------RRSIL 134 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc-CC-----------C--------------------------hHHHH
Confidence 249999999887664 9999985322100 00 0 00001
Q ss_pred HHHHHHHhhhcCCC---cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 006275 236 DAKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (652)
Q Consensus 236 ~~~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvI 310 (652)
++.+.++++.+++. .+..++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tii 214 (265)
T PRK14252 135 EERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTIL 214 (265)
T ss_pred HHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEE
Confidence 12233334444432 1345677899999999999999999999999999999999999999999888753 368999
Q ss_pred EEecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 311 ivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+|||+++++..+||+++++++|++. ..|+.+++
T Consensus 215 ivth~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 247 (265)
T PRK14252 215 IVTHNMQQAARVSDYTAYMYMGELI-EFGATDTI 247 (265)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999985 55665543
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=327.27 Aligned_cols=208 Identities=19% Similarity=0.323 Sum_probs=168.7
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC-----------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN----------- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~----------- 160 (652)
.|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 4899999999998889999999999999999999999999999999999864 489999998743
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
..++|++|++.++. .|+.+|+...+... . ..+....++++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~--------------~------------------------~~~~~~~~~~~ 123 (250)
T PRK14266 83 RKKVGMVFQKPNPFP-KSIFDNVAYGLRIH--------------G------------------------EDDEDFIEERV 123 (250)
T ss_pred hhheEEEecCCccCc-chHHHHHHhHHhhc--------------C------------------------CCCHHHHHHHH
Confidence 24999999988765 59999985322100 0 00000112334
Q ss_pred HHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 006275 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (652)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsH 314 (652)
.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++ .+.|||++||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh 203 (250)
T PRK14266 124 EESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 45555555531 245778899999999999999999999999999999999999999999988753 4789999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+++++..+||+++++++|++. +.|+.+++
T Consensus 204 ~~~~~~~~~~~i~~l~~G~i~-~~g~~~~~ 232 (250)
T PRK14266 204 NMQQATRVSKYTSFFLNGEII-ESGLTDQI 232 (250)
T ss_pred CHHHHHhhcCEEEEEECCeEE-EeCCHHHH
Confidence 999999999999999999884 66776655
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=368.54 Aligned_cols=210 Identities=26% Similarity=0.415 Sum_probs=168.0
Q ss_pred ceEEEeEEEEe-CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eEEE
Q 006275 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i~~ 165 (652)
.|+++|++|.| +++++|+|+||+|++|+++|||||||||||||+++|+|++ |++|+|.++|.+. .|+|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 49999999766 5567999999999999999999999999999999999999 9999999998542 6999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
|+|+|++ ++.|++||+..+-.+ .. -+++.++++.++ +. +.+..
T Consensus 428 v~Q~~~L-F~~TI~eNI~~g~~~-~~----~eei~~al~~a~---------------------------l~----~~i~~ 470 (588)
T PRK11174 428 VGQNPQL-PHGTLRDNVLLGNPD-AS----DEQLQQALENAW---------------------------VS----EFLPL 470 (588)
T ss_pred ecCCCcC-CCcCHHHHhhcCCCC-CC----HHHHHHHHHHhC---------------------------HH----HHHHh
Confidence 9999987 678999999743111 00 012222222111 11 11222
Q ss_pred c--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006275 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (652)
+ |+.+..+++ ..+||||||||++|||||+++|+|||||||||+||+++.+.+.+.|++ .++|+|+|||+++.+.
T Consensus 471 lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~- 548 (588)
T PRK11174 471 LPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA- 548 (588)
T ss_pred cccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-
Confidence 2 554444333 688999999999999999999999999999999999999999887754 4799999999999985
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
.||+|+++++|++ ...|+++++...
T Consensus 549 ~aD~Iivl~~G~i-~e~G~~~eL~~~ 573 (588)
T PRK11174 549 QWDQIWVMQDGQI-VQQGDYAELSQA 573 (588)
T ss_pred hCCEEEEEeCCeE-eecCCHHHHHhc
Confidence 5999999999998 578998887654
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=319.96 Aligned_cols=191 Identities=27% Similarity=0.450 Sum_probs=165.2
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceeccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~~ 496 (652)
++++||++.|+. ++.++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 468999999974 578999999999999999999999999999999999999999999998752 2344444
Q ss_pred ccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
..+++..|+.+|+...... ....++.++++.+++. +..++.+.+||||||||++|||||+.+|++||||||
T Consensus 79 --~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 155 (213)
T TIGR01277 79 --NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP 155 (213)
T ss_pred --CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3466678999999754211 1234567889999994 678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
|++||+.++..+.++|.++ +.|||+|||+++++..+||++++|++|++..
T Consensus 156 t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 156 FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9999999999999998764 4599999999999999999999999999974
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=324.45 Aligned_cols=194 Identities=27% Similarity=0.442 Sum_probs=165.1
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cc
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (652)
.++|+++|+++.|+++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 34799999999999889999999999999999999999999999999999999999999999997652 23
Q ss_pred eecccccccCCCCCCHHHHHHHhhh----hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlL 567 (652)
|++|. ..++ ..|+.+|+..... ......+.++++.+++.....++++.+|||||||||+|||||+.+|++|||
T Consensus 85 ~~~q~--~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (225)
T PRK10247 85 YCAQT--PTLF-GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLL 161 (225)
T ss_pred EEecc--cccc-cccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44444 2344 4599999875321 112345678999999964567899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEe--CCEEE
Q 006275 568 DEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK--GSNLQ 619 (652)
Q Consensus 568 DEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~--~g~i~ 619 (652)
||||++||+.+++.+.++|+++ +.|||++|||++++. .||++++|+ .|++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 162 DEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQ 218 (225)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHh
Confidence 9999999999999999988864 459999999999996 599999996 56654
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=325.11 Aligned_cols=191 Identities=25% Similarity=0.324 Sum_probs=165.4
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCC
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 504 (652)
+.+++++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . + ....+.+.
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~--~-~-~~~~~~~~ 98 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL--L-G-LGGGFNPE 98 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--h-c-ccccCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999976421 1 1 11234567
Q ss_pred CCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH
Q 006275 505 KTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578 (652)
Q Consensus 505 ~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~ 578 (652)
.|+.+|+....... ....+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 89999987643211 123466788888984 66789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 579 KEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 579 ~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
+..+.++|.++ +.|||+||||++++..+||++++|++|++..
T Consensus 178 ~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 178 QEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999998765 4699999999999999999999999999863
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=360.36 Aligned_cols=204 Identities=23% Similarity=0.334 Sum_probs=177.9
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------c
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (652)
.++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 45799999999999888999999999999999999999999999999999999999999999997652 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhhc--cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAEDW--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
+|++|+ ..+++..|+.+|+.+..... ..+.+.++++.+++. ...++++.+|||||||||+|||||+.+|+|||||
T Consensus 89 ~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLD 165 (510)
T PRK15439 89 YLVPQE--PLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILD 165 (510)
T ss_pred EEEecc--CccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 345554 34667889999998653221 234577899999995 5679999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 569 EPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 569 EPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
|||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|++. +.|+++++.
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 228 (510)
T PRK15439 166 EPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA-LSGKTADLS 228 (510)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecChHHcC
Confidence 999999999999999998765 469999999999999999999999999997 467777653
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=325.03 Aligned_cols=196 Identities=30% Similarity=0.390 Sum_probs=162.1
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCC
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~T 177 (652)
+.+++++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. +.+..+...+.+..|
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~--~~~~~~~~~~~~~~t 100 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV--SSLLGLGGGFNPELT 100 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--chhhcccccCCCCCc
Confidence 788999999999999999999999999999999999999999999999999999999998753 222233344556789
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCC
Q 006275 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (652)
Q Consensus 178 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (652)
|.||+...... . .........++.++++.+|+. +..++++
T Consensus 101 v~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 140 (224)
T cd03220 101 GRENIYLNGRL---------------L------------------------GLSRKEIDEKIDEIIEFSELG-DFIDLPV 140 (224)
T ss_pred HHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh-hhhhCCh
Confidence 99997522100 0 000011223455677788885 5678889
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEcCCeE
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~ 334 (652)
.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+ +.++|||+|||+++++..+||+++++++|++
T Consensus 141 ~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999888764 3478999999999999999999999999987
Q ss_pred E
Q 006275 335 R 335 (652)
Q Consensus 335 ~ 335 (652)
.
T Consensus 221 ~ 221 (224)
T cd03220 221 R 221 (224)
T ss_pred E
Confidence 4
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=345.98 Aligned_cols=201 Identities=23% Similarity=0.457 Sum_probs=177.4
Q ss_pred EEEEEeeeeEeCCee-eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cce
Q 006275 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~-vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (652)
.|+++||+++|++++ +|+++||+|++||++||+|+|||||||++|+|.++++ .+|+|.+||.++. .++
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence 499999999999776 9999999999999999999999999999999999999 9999999999873 356
Q ss_pred ecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhh----------hccCcCCCCHHHHHHHHHHHHHccCC
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEKARLAFCKFMVKPS 562 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqrqrv~LAral~~~p 562 (652)
++|+ ...++.|+..|+.++......+++.+..+++++.... ...+...|||||||||+||||++++|
T Consensus 430 VPQd---~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 430 VPQD---SVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eCCc---ccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 6654 3457899999999998888888899999999885321 22344589999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|++||||||+||.++++.+.+.|.+. ++|+|+|.||++++.+ ||+|+++++|++.++ |+.++.+.
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~-gth~ell~ 574 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEY-GTHSELLA 574 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEe-ccHHHHhh
Confidence 999999999999999999999999863 4699999999999987 999999999999864 88887766
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=361.95 Aligned_cols=209 Identities=31% Similarity=0.458 Sum_probs=174.2
Q ss_pred CCceEEEeEEEEeCC-----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC-CC---------
Q 006275 95 SSGVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-KS--------- 159 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~-~~--------- 159 (652)
.++|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ |.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 457999999999952 469999999999999999999999999999999999999999999984 31
Q ss_pred -------CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCCh
Q 006275 160 -------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (652)
Q Consensus 160 -------~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (652)
..+|+|++|++.+++..||.+|+...+. +. ...
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~---------------~~-------------------------~~~ 396 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG---------------LE-------------------------LPD 396 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHH---------------cC-------------------------CCH
Confidence 1249999999887778899999853210 00 000
Q ss_pred hcHHHHHHHHhhhcCCCc----ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----c
Q 006275 233 DTLDAKVSKLMPELGFTA----DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (652)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~----~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~ 304 (652)
.....++.++++.+|+.. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +
T Consensus 397 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~ 476 (520)
T TIGR03269 397 ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476 (520)
T ss_pred HHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 012335567788889863 25688999999999999999999999999999999999999999999998873 3
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 305 ~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
.|.|||+||||++++.++||+|++|++|++. +.|+.+++
T Consensus 477 ~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 515 (520)
T TIGR03269 477 MEQTFIIVSHDMDFVLDVCDRAALMRDGKIV-KIGDPEEI 515 (520)
T ss_pred cCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 5899999999999999999999999999974 55765543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=331.99 Aligned_cols=204 Identities=27% Similarity=0.434 Sum_probs=172.0
Q ss_pred CcEEEEEeeeeEeC--CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
+++|+++|+++.|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 34799999999995 468999999999999999999999999999999999999999999999998753
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhh--cc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
.+|++|+.. ..++..|+.+|+...... .. ...+.++++.+++. +..++++.+||||||||++|||||+.+|+
T Consensus 85 i~~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 85 IGIIFQNPD-NQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred eEEEEeCHH-HhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 134444421 234568999999764321 11 22467889999994 67899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+|||||||+|||+.+++.+.++|+++ +.|||++|||++++. .||++++|++|++.. .|+.++..
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 230 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIA-QGKPKEIL 230 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEE-ecCHHHHh
Confidence 99999999999999999999999865 259999999999996 799999999999974 46666543
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=324.18 Aligned_cols=201 Identities=27% Similarity=0.428 Sum_probs=173.5
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc--------ceeccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------NYFEQN 496 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------~~~~~~ 496 (652)
|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +|.+|.
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 478999999998899999999999999999999999999999999999999999999999987521 234433
Q ss_pred ccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
..+++..|+.+|+...... .....+.++++.+++. ...++.+.+||+||+||++|||||+.+|+++|||||
T Consensus 81 --~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (237)
T TIGR00968 81 --YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEP 157 (237)
T ss_pred --hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455678999999764321 1134567889999994 678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
|++||+.+++.+.++|.+. +.|||++||+++++..+||++++|++|++.+ .|+.++..
T Consensus 158 ~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 219 (237)
T TIGR00968 158 FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ-IGSPDEVY 219 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE-ecCHHHHH
Confidence 9999999999999999864 4699999999999999999999999999974 46666654
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=308.86 Aligned_cols=163 Identities=25% Similarity=0.429 Sum_probs=147.3
Q ss_pred eEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCC
Q 006275 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (652)
Q Consensus 98 i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~ 176 (652)
|+++|++++|++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++.+ +..
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-~~i~~~~q~~~~-~~~ 78 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-EDLLFLPQRPYL-PLG 78 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-ceEEEECCCCcc-ccc
Confidence 478999999964 57999999999999999999999999999999999999999999999864 579999999875 467
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
|+.||+.. + .
T Consensus 79 tv~~nl~~--------------------------------------------------------------~--------~ 88 (166)
T cd03223 79 TLREQLIY--------------------------------------------------------------P--------W 88 (166)
T ss_pred cHHHHhhc--------------------------------------------------------------c--------C
Confidence 89888630 0 2
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCe
Q 006275 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~ 333 (652)
+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++.+.|+|++||+.++. .+||+++++++++
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 578999999999999999999999999999999999999999999988789999999999876 6999999998875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=332.25 Aligned_cols=202 Identities=20% Similarity=0.347 Sum_probs=166.6
Q ss_pred EEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------cceecc
Q 006275 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~~~~~ 495 (652)
+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 599999999996 578999999999999999999999999999999999999999999999997652 234555
Q ss_pred cccccCCCCCCHHHHHHHhhh----------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 496 NQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
+.........++.+++..... ......+.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 432111223456777643210 11123467789999995 5679999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
||||||++||+.+++.+.++|+++ +.|||+||||++++..+||+++.+ +|++.. .|+.++.
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~-~g~~~~~ 228 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA-SGPTETT 228 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe-ecCHHhc
Confidence 999999999999999999999865 459999999999999999999877 899874 5766654
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=342.87 Aligned_cols=197 Identities=28% Similarity=0.377 Sum_probs=169.2
Q ss_pred eeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------cceec
Q 006275 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------PNYFE 494 (652)
Q Consensus 429 ~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~~~~~ 494 (652)
|++++|+++.+ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 89999987664 999999999999999999999999999999999999999999997652 12444
Q ss_pred ccccccCCCCCCHHHHHHHhhhhc----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 495 QNQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
|+ ..+++.+|+.+|+.+..... ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus 82 q~--~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 82 QE--ARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred cC--CccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 43 45677899999998753221 123478899999995 678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++. ..|+.++....
T Consensus 159 ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~ 222 (354)
T TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA-AAGPIAEVWAS 222 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-EECCHHHHhcC
Confidence 9999999999999998764 469999999999999999999999999997 45777766543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=330.35 Aligned_cols=208 Identities=25% Similarity=0.367 Sum_probs=171.7
Q ss_pred CCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceecc-----
Q 006275 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL----- 489 (652)
Q Consensus 420 ~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~----- 489 (652)
|+.++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 20 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred CCceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 45668999999999988889999999999999999999999999999999999997 69999999997652
Q ss_pred -------cceecccccccCCCCCCHHHHHHHhhhh---cc----HHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHH
Q 006275 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARL 552 (652)
Q Consensus 490 -------~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv 552 (652)
.+|++|+ ..++. .|+.+|+...... .. ...+.+.++.+++. .+..++++.+||||||||+
T Consensus 100 ~~~~~~~i~~v~q~--~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 100 VEELRTNVGMVFQK--PNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHHhhhEEEEecC--Ccccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 1344443 23443 5999999764321 11 12245566666431 2356789999999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 553 ~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|++.. .|++++...
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~~~ 255 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE-YDDTDKIFS 255 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHc
Confidence 9999999999999999999999999999999999876 3699999999999999999999999999975 577776644
Q ss_pred h
Q 006275 631 S 631 (652)
Q Consensus 631 ~ 631 (652)
.
T Consensus 256 ~ 256 (271)
T PRK14238 256 N 256 (271)
T ss_pred C
Confidence 3
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=330.45 Aligned_cols=207 Identities=25% Similarity=0.352 Sum_probs=172.9
Q ss_pred CCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceecc-----
Q 006275 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL----- 489 (652)
Q Consensus 420 ~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~----- 489 (652)
.++++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 35 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 35 GGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CCceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35678999999999988889999999999999999999999999999999999864 49999999997642
Q ss_pred -------cceecccccccCCCCCCHHHHHHHhhhh---cc----HHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHH
Q 006275 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARL 552 (652)
Q Consensus 490 -------~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv 552 (652)
.+|++|+ ..+++ .|+.+|+.+.... .. .+.+.++++.+++. .+..++++.+|||||||||
T Consensus 115 ~~~~~~~i~~v~q~--~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 115 EVLLRKKIGMVFQK--PNPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hHHhhhcEEEECCC--CCCCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 1244443 23444 5999999864321 11 23456778888763 2456889999999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 553 ~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|||||+.+|++|||||||++||+.++..+.+.|+++. .|||+||||++++..+|||+++|++|++. ..|+.++..+
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~~~~ 270 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLV-EHAPTAQLFT 270 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999999999999999998763 49999999999999999999999999997 4577776644
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=326.23 Aligned_cols=203 Identities=28% Similarity=0.400 Sum_probs=170.2
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~--------- 489 (652)
.|+++||++.|+++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 58999999999888899999999999999999999999999999999999863 6999999997653
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhhc-------cHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHHH
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAEDW-------RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.+|++|+ ..+++ .|+.+|+.+....+ ..+.+.++++.+++.. ...++++.+||||||||++|||
T Consensus 83 ~~~i~~~~q~--~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 83 RKRVGMVFQQ--PNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred hccEEEEecC--CccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 1244443 23444 89999998643211 1234667788887632 3468899999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++.+.++||++++|++|++.. .|+.+++..
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 234 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE-FGDTVDLFT 234 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 999999999999999999999999999999876 3599999999999999999999999999974 577766543
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=323.26 Aligned_cols=201 Identities=30% Similarity=0.469 Sum_probs=172.4
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc--------ceeccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------NYFEQN 496 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------~~~~~~ 496 (652)
|+++|++++|++. +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ++.+|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4689999999765 8999999999999999999999999999999999999999999999986531 344443
Q ss_pred ccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 497 QAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
..+++..|+.+|+....... ...++.++++.+++. ...++++.+||||||||++||||++.+|++||||||
T Consensus 80 --~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 156 (235)
T cd03299 80 --YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP 156 (235)
T ss_pred --CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 34566789999997643211 123467889999994 678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|++||+.++..+.+.|+++ +.|||++||+++++..+||++++|++|++.. .|++++..+
T Consensus 157 t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 219 (235)
T cd03299 157 FSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ-VGKPEEVFK 219 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHHh
Confidence 9999999999999998764 4699999999999999999999999999974 577666544
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=328.31 Aligned_cols=205 Identities=24% Similarity=0.310 Sum_probs=172.9
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceecc-------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~------- 489 (652)
..+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 457999999999998899999999999999999999999999999999999996 58999999998752
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhhhc-------cHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAEDW-------RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~L 554 (652)
.+|++|. ..+++ .|+.+|+....... ....+.++++.+++.. ...++++.+||||||||++|
T Consensus 98 ~~~~~i~~v~q~--~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~l 174 (267)
T PRK14237 98 EMRKHIGMVFQR--PNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCI 174 (267)
T ss_pred HHhcceEEEecC--Ccccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHH
Confidence 1234433 23443 69999998643211 1234667788888742 35688999999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||+.+|++|||||||++||+.++..+.++|++.. .|||+|||+++++..+||++++|++|++.. .|+.++...
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 251 (267)
T PRK14237 175 ARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE-YDKTRNIFT 251 (267)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE-eCCHHHHhc
Confidence 999999999999999999999999999999998763 599999999999999999999999999984 577777644
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=325.64 Aligned_cols=204 Identities=25% Similarity=0.396 Sum_probs=170.3
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-----GGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~~~--------- 489 (652)
+++++|+++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 689999999999889999999999999999999999999999999999999874 899999997652
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhhc---c----HHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHHHH
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAEDW---R----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~~---~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.+|++|+ ..+++..|+.+|+....... . .+.+.+.+..+++. .+..++++.+||||||||++|||
T Consensus 84 ~~~i~~~~q~--~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14272 84 RRRVGMVFQK--PNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIAR 161 (252)
T ss_pred hceeEEEecc--CccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHH
Confidence 1244443 34566789999997643211 1 12344556666542 23457889999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||+.+|+||||||||++||+.++..+.++|+++. .|||++|||++++..+|||+++|++|++. ..|+.++...
T Consensus 162 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 236 (252)
T PRK14272 162 ALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV-EHGPTDQLFT 236 (252)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999999999999998763 69999999999999999999999999997 4678777654
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=326.80 Aligned_cols=217 Identities=26% Similarity=0.362 Sum_probs=175.9
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~--------- 489 (652)
.-+++|+++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 5 ~~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 5 HASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 3578999999988899999999999999999999999999999999999986 47999999997652
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhh--h------ccHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHH
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAE--D------WRIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~--~------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|++|+ ..+++ .|+.+|+..... . .....+.++++.+++.. ...++.+.+||||||||++||
T Consensus 85 ~~~i~~v~q~--~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 85 RAKVGMVFQK--PNPFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred hhhEEEEecC--ccccc-CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 1344544 23444 499999876421 1 11234667889999853 245788999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcC
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFS 633 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~ 633 (652)
|||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|||+++|++|++.. .|+.+++.+..
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~~~- 239 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE-YNTTQEIFKNP- 239 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE-eCCHHHHhcCC-
Confidence 9999999999999999999999999999999865 3699999999999999999999999999974 57777765432
Q ss_pred CcccccchhHHHhh
Q 006275 634 PFLLVPLRSYFFKH 647 (652)
Q Consensus 634 ~~~~~~~~~~~~~~ 647 (652)
....++.|.+.|
T Consensus 240 --~~~~~~~~~~~~ 251 (251)
T PRK14244 240 --QSSKTKRYIVDH 251 (251)
T ss_pred --CChHHHHhcccC
Confidence 122245565554
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=323.76 Aligned_cols=202 Identities=27% Similarity=0.349 Sum_probs=165.8
Q ss_pred ceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCCC-------ce
Q 006275 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSN-------MK 162 (652)
Q Consensus 97 ~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~---p~~G~i~~~~~~-------~~ 162 (652)
.+.++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 3678999999965 469999999999999999999999999999999999999 999999998743 36
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH-
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK- 241 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 241 (652)
++|++|++.+++..|++||+....... . .. . .........+.+
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~--~-----------~~---~--------------------~~~~~~~~~~~~~ 126 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILR--L-----------PR---K--------------------SSDAIRKKRVEDV 126 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhh--c-----------cc---c--------------------cchHHHHHHHHHH
Confidence 999999998877889999985321100 0 00 0 000001112333
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCH-H
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR-A 317 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~-~ 317 (652)
+++.+++. +..++.+.+|||||+|||+|||||+.+|++|||||||+|||+.++..+.++|+ +.+.|+|++||+. +
T Consensus 127 ~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~ 205 (226)
T cd03234 127 LLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRS 205 (226)
T ss_pred HHHhhcch-hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCH
Confidence 67777775 56778899999999999999999999999999999999999999999988874 3488999999998 6
Q ss_pred HHHhhcCeEEEEcCCeEE
Q 006275 318 FLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~ 335 (652)
.+.++||+++++++|++.
T Consensus 206 ~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 206 DLFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHHhCCEEEEEeCCEEE
Confidence 888999999999999874
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=326.42 Aligned_cols=189 Identities=29% Similarity=0.405 Sum_probs=157.7
Q ss_pred eeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-----eEEEEeccCccCCCCCHHHHHHHhhH
Q 006275 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFK 187 (652)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~-----~i~~v~Q~~~~~~~~Tv~e~i~~~~~ 187 (652)
|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. ..+|++|++.+++..|+.||+...+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999987432 36899999988778899999853211
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHH
Q 006275 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (652)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqR 267 (652)
.. .. ..+......++.++++.+|+. +..++++.+||||||||
T Consensus 81 ~~-------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qr 122 (230)
T TIGR01184 81 RV-------------LP------------------------DLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQR 122 (230)
T ss_pred hc-------------cc------------------------CCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHH
Confidence 00 00 000111234566788888986 56788899999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCC
Q 006275 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (652)
Q Consensus 268 v~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~ 340 (652)
|+|||||+.+|++|||||||+|||+.+++++.++|++ .|+|||+|||+++++..+||+|++|++|++. ..|+
T Consensus 123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~ 198 (230)
T TIGR01184 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA-NIGQ 198 (230)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe-cccC
Confidence 9999999999999999999999999999999887743 4889999999999999999999999999884 4454
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=312.63 Aligned_cols=162 Identities=39% Similarity=0.572 Sum_probs=146.0
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------ceEEE
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAF 165 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------~~i~~ 165 (652)
|+++|++++|+++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 478999999988889999999999999999999999999999999999999999999987732 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++..|++||+.
T Consensus 81 ~~q~~~~~~~~t~~~~l~-------------------------------------------------------------- 98 (178)
T cd03229 81 VFQDFALFPHLTVLENIA-------------------------------------------------------------- 98 (178)
T ss_pred EecCCccCCCCCHHHhee--------------------------------------------------------------
Confidence 999988766778887741
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~-g~tvIivsHd~~~l~~ 321 (652)
. .||||||||++|||||+.+|++|||||||+|||+.++.++.++|++ . +.|+|++||+++++..
T Consensus 99 ------~------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 99 ------L------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred ------e------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 0 0999999999999999999999999999999999999999988743 3 7899999999999999
Q ss_pred hcCeEEEEcCCe
Q 006275 322 LCTKIVETEMGV 333 (652)
Q Consensus 322 ~~d~ii~l~~G~ 333 (652)
+||++++|++|+
T Consensus 167 ~~d~i~~l~~g~ 178 (178)
T cd03229 167 LADRVVVLRDGK 178 (178)
T ss_pred hcCEEEEEeCCC
Confidence 999999998873
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=309.57 Aligned_cols=205 Identities=26% Similarity=0.401 Sum_probs=180.0
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccc----------ee
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN----------YF 493 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~----------~~ 493 (652)
||+++||+++|+++.+++++|++|++|.+++|+|||||||||||.++++++++++|+|+++|.++... ..
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999887421 12
Q ss_pred cccccccCCCCCCHHHHHHHhhh--------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
. |.......+||++-+.++.- ..+...+.++++.+++ .++.+++..+||||||||..+|..++++.+.+
T Consensus 81 k--Q~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L-~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyv 157 (252)
T COG4604 81 K--QENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHL-EDLSDRYLDELSGGQRQRAFIAMVLAQDTDYV 157 (252)
T ss_pred H--hhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcc-cchHHHhHHhcccchhhhhhhheeeeccCcEE
Confidence 2 33445678899999988631 1223457888999998 57899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 566 VLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
+||||.|+||......+++.++ ++++||++|-||++|+..++|+|+.|++|+++ ..|++++.++..
T Consensus 158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv-~~G~~~eii~~~ 227 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV-KQGSPDEIIQPE 227 (252)
T ss_pred EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE-ecCCHHHhcCHH
Confidence 9999999999999988888876 45789999999999999999999999999997 679999876543
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=326.99 Aligned_cols=200 Identities=24% Similarity=0.429 Sum_probs=161.0
Q ss_pred CCceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------c
Q 006275 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------M 161 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~ 161 (652)
.++|+++|++++|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 456999999999975 369999999999999999999999999999999999999999999998753 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
.++|++|++.++ ..|+++|+...+... .. ..+.. . .....+.+
T Consensus 89 ~i~~~~q~~~l~-~~tv~~nl~~~~~~~-~~----~~~~~------------------------~-------~~~~~~~~ 131 (226)
T cd03248 89 KVSLVGQEPVLF-ARSLQDNIAYGLQSC-SF----ECVKE------------------------A-------AQKAHAHS 131 (226)
T ss_pred hEEEEecccHHH-hhhHHHHhccccCCC-CH----HHHHH------------------------H-------HHHcCcHH
Confidence 599999998764 469999985322100 00 00000 0 00111234
Q ss_pred Hhhhc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHH
Q 006275 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (652)
Q Consensus 242 ll~~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~ 317 (652)
+++.+ |+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||++||+++
T Consensus 132 ~l~~l~~gl~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 210 (226)
T cd03248 132 FISELASGYD-TEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLS 210 (226)
T ss_pred HHHhcccccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 55556 665 346778999999999999999999999999999999999999999999988753 3689999999999
Q ss_pred HHHhhcCeEEEEcCCe
Q 006275 318 FLDQLCTKIVETEMGV 333 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~ 333 (652)
++. .||+|++|++|+
T Consensus 211 ~~~-~~d~i~~l~~g~ 225 (226)
T cd03248 211 TVE-RADQILVLDGGR 225 (226)
T ss_pred HHH-hCCEEEEecCCc
Confidence 996 599999999885
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=374.33 Aligned_cols=247 Identities=25% Similarity=0.401 Sum_probs=191.4
Q ss_pred HHHHhhhhhHHhhhccCccccccccccccCCCCCCCCCCCceEEEeEEEEeCCee---eeeeeeEEEECCCEEEEECCCC
Q 006275 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT---VLKDVTWEVKKGEKVGLVGVNG 133 (652)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ls~~y~~~~---vL~~vsl~i~~Ge~~~lvG~NG 133 (652)
..+.++..++.++|...++.+......+ .+.........|+++||+|.|+.+| ||+|+||+|++|+.+|||||+|
T Consensus 949 Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~--~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SG 1026 (1228)
T KOG0055|consen 949 PDISKAKIAAGSIFEILDRKPTIDPDST--SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSG 1026 (1228)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCC
Confidence 3456666667777776655442222221 1111122345699999999998765 9999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCCcEEEECCCCc----------eEEEEeccCccCCCCCHHHHHHHhhHH----HHHHHHHHHHH
Q 006275 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE----EMEIAGKLERV 199 (652)
Q Consensus 134 sGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i~~v~Q~~~~~~~~Tv~e~i~~~~~~----~~~~~~~~~~~ 199 (652)
|||||.+.+|..+|.|++|.|.++|.+. +||.|+|+|.+ ++.|++|||..+... +...+.++..+
T Consensus 1027 sGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~L-F~~TIrENI~YG~~~vs~~eIi~Aak~ANa 1105 (1228)
T KOG0055|consen 1027 SGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVL-FNGTIRENIAYGSEEVSEEEIIEAAKLANA 1105 (1228)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchh-hcccHHHHHhccCCCCCHHHHHHHHHHhhh
Confidence 9999999999999999999999998653 59999999987 889999999865211 11111222222
Q ss_pred HHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 006275 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (652)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~ 279 (652)
+..+.+.++ |.++..+++ ..+||||||||+|||||+++||+
T Consensus 1106 H~FI~sLP~--------------------------------------GyDT~vGer-G~QLSGGQKQRIAIARAilRnPk 1146 (1228)
T KOG0055|consen 1106 HNFISSLPQ--------------------------------------GYDTRVGER-GVQLSGGQKQRIAIARAILRNPK 1146 (1228)
T ss_pred HHHHhcCcC--------------------------------------cccCccCcc-cCcCCchHHHHHHHHHHHHcCCC
Confidence 222222111 444444444 78999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 280 iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
||||||.||+||.++.+.+.+.|.+ .|+|.|+|.|++..+ +-||.|+|+++|++ +.+|+.++++..
T Consensus 1147 ILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTI-qnaD~I~Vi~~G~V-vE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1147 ILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTI-QNADVIAVLKNGKV-VEQGTHDELLAK 1214 (1228)
T ss_pred eeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhh-hcCCEEEEEECCEE-EecccHHHHHhC
Confidence 9999999999999999999999964 589999999999999 56999999999998 688998887653
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=324.42 Aligned_cols=209 Identities=26% Similarity=0.340 Sum_probs=181.7
Q ss_pred EEEEEeeeeEeCCe------------------------eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee
Q 006275 424 VVTIKNLEFGYEDR------------------------LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (652)
Q Consensus 424 ~i~~~~v~~~y~~~------------------------~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (652)
.|+++||++-||.+ .-++|+||+|+.||++.|.|-+|||||||+|+|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 47888888887631 237899999999999999999999999999999999999999
Q ss_pred EEEECceeccc--------------ceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhcc
Q 006275 480 EVLLGEHNVLP--------------NYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDR 539 (652)
Q Consensus 480 ~i~~~g~~~~~--------------~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~ 539 (652)
+|.++|.++.. ..++| ...+.|+.||.+|+.++.+. .+.+.+.++|+.+|+. .+.++
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ--~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~-~~~~~ 160 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQ--SFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE-GYADK 160 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhh--hhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch-hhhhc
Confidence 99999988631 12333 45688999999999987542 2345688999999995 68899
Q ss_pred CcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEeC
Q 006275 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKG 615 (652)
Q Consensus 540 ~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~drvi~l~~ 615 (652)
+|.+|||||||||.|||||+.+|+|||+|||+|+|||--+..|++-|.+ +.+|||+||||++++.++.|||..|++
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkd 240 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecC
Confidence 9999999999999999999999999999999999999999999987754 467999999999999999999999999
Q ss_pred CEEEeecCChhhHhhhcCCcc
Q 006275 616 SNLQDYAGDYNVCFTSFSPFL 636 (652)
Q Consensus 616 g~i~~~~g~~~~~~~~~~~~~ 636 (652)
|+|+. .|.+++++...+..|
T Consensus 241 G~ivQ-~Gtp~eIl~~PAndY 260 (386)
T COG4175 241 GEIVQ-VGTPEEILLNPANDY 260 (386)
T ss_pred CeEEE-eCCHHHHHcCccHHH
Confidence 99985 599999887777665
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=328.21 Aligned_cols=206 Identities=24% Similarity=0.371 Sum_probs=172.9
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc-------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~------- 489 (652)
.++|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4579999999999989999999999999999999999999999999999999985 6999999997652
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhh---ccH----HHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---WRI----DDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|++|. ..+++ .|+.+|+...... ... ..+.++++.+++.. +..++.+.+||||||||++||
T Consensus 99 ~~~~i~~v~q~--~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 99 FRRRVGMLFQR--PNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred HhhheEEeccC--CccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 1244443 23444 7999999764311 111 23456788888853 245788999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||+.+|+||||||||++||+.+++.+.+.|+++ ..|||+||||++++.++|||+++|++|++.. .|+.+++.+.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~~~ 252 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE-EGPTEQLFSS 252 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHhC
Confidence 9999999999999999999999999999999876 3699999999999999999999999999974 5777776543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=331.58 Aligned_cols=205 Identities=30% Similarity=0.422 Sum_probs=173.5
Q ss_pred CcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCe---eEEEECceecc-------
Q 006275 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLLGEHNVL------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~---G~i~~~g~~~~------- 489 (652)
..+|+++|+++.|++ +++|+++||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.++.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 347999999999964 469999999999999999999999999999999999999987 89999998763
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhh--cc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
.+|++|+.. ...+..|+.+|+.+.... .. .+.+.++++.+++. +..++++.+||||||||++|||||+.
T Consensus 83 ~~~ig~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 83 REKVGIVFQNPD-NQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred HhheEEEEECHH-HhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 134555432 234578999999764321 11 23477889999995 67899999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|++|||||||+|||+.++..+.+.|+++ +.|||+|||+++++. .|||+++|++|++.. .|++++...
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~~ 232 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLA-QGSPVEIFS 232 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-eCCHHHHhc
Confidence 99999999999999999999999999764 469999999999995 799999999999984 577776543
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=302.44 Aligned_cols=204 Identities=25% Similarity=0.376 Sum_probs=179.2
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc------------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------------ 490 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~------------ 490 (652)
+.++++|+.++||...+|++|||+-++|+++.|+|.+||||||+|+||.=+.+|+.|.|.++|..+..
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 35899999999999999999999999999999999999999999999999999999999999976521
Q ss_pred -----------ceecccccccCCCCCCHHHHHHHhhh-------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHH
Q 006275 491 -----------NYFEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552 (652)
Q Consensus 491 -----------~~~~~~~~~~~~~~~tv~e~~~~~~~-------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv 552 (652)
+.++ |..++...+|+.||+..+.- ....+.+..+|.++|+. +..+.+|..||||||||+
T Consensus 85 ~~q~~r~Rs~L~mVF--Q~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~ 161 (256)
T COG4598 85 KRQLQRLRTRLGMVF--QHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRV 161 (256)
T ss_pred HHHHHHHHHHhhHhh--hhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHH
Confidence 1122 33467788999999987632 22345678899999995 667899999999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 553 ~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+|||||+.+|+++|+|||||+|||+-...+...++++ +.|+++|||.+.|+.+++++|+++++|.|. ..|++++.+
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE-E~G~P~qvf 240 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE-EEGPPEQVF 240 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec-ccCChHHHh
Confidence 9999999999999999999999999999988888765 679999999999999999999999999986 579988876
Q ss_pred h
Q 006275 630 T 630 (652)
Q Consensus 630 ~ 630 (652)
.
T Consensus 241 ~ 241 (256)
T COG4598 241 G 241 (256)
T ss_pred c
Confidence 3
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=327.04 Aligned_cols=214 Identities=26% Similarity=0.385 Sum_probs=183.0
Q ss_pred EEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-C----CeeEEEECceecc-----
Q 006275 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-P----RGGEVLLGEHNVL----- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-p----~~G~i~~~g~~~~----- 489 (652)
+++++|+++.|.. ..+++||||+|++||++||||.|||||||+.++|+|+++ | .+|+|.++|.++.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 3789999999963 469999999999999999999999999999999999997 4 5799999998652
Q ss_pred ---------cceecccccccCCCCCCHHHHHHHhhhhc--------cHHHHHHHHhhCCCChh--hhccCcCCCCHHHHH
Q 006275 490 ---------PNYFEQNQAEALDLDKTVLETVAEAAEDW--------RIDDIKGLLGRCNFKAD--MLDRKVSLLSGGEKA 550 (652)
Q Consensus 490 ---------~~~~~~~~~~~~~~~~tv~e~~~~~~~~~--------~~~~~~~~L~~~~l~~~--~~~~~~~~LSgGqrq 550 (652)
.++++|++...++|-+++-+.+....... ..+.+.++|+.+|+... ..+.+|.+|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 24678887788899999988877654311 13468899999999754 679999999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChh
Q 006275 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (652)
Q Consensus 551 rv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~ 626 (652)
||.||.||+.+|++||.||||.+||...+..+.++|++. +.|+|+||||+..+.++||||+||+.|+|++. |+.+
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~-g~~~ 239 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE-GPVE 239 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe-CCHH
Confidence 999999999999999999999999999999999988754 56999999999999999999999999999975 7776
Q ss_pred hHh-hhcCCcccc
Q 006275 627 VCF-TSFSPFLLV 638 (652)
Q Consensus 627 ~~~-~~~~~~~~~ 638 (652)
+++ +..+||-+.
T Consensus 240 ~i~~~P~HPYT~~ 252 (316)
T COG0444 240 EIFKNPKHPYTRG 252 (316)
T ss_pred HHhcCCCChHHHH
Confidence 654 555555443
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=321.01 Aligned_cols=191 Identities=30% Similarity=0.494 Sum_probs=161.6
Q ss_pred EEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cce
Q 006275 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (652)
Q Consensus 425 i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (652)
|+++|+++.|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++. .+|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 789999999975 57999999999999999999999999999999999999999999999997652 234
Q ss_pred ecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccC-----------cCCCCHHHHHHHHHHHHHccC
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK-----------VSLLSGGEKARLAFCKFMVKP 561 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----------~~~LSgGqrqrv~LAral~~~ 561 (652)
++|+. .++ ..|+.+|+...........+.++++.+++. +..++. +.+||||||||++|||||+.+
T Consensus 83 ~~q~~--~~~-~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 83 VPQDV--TLF-YGTLRDNITLGAPLADDERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred eCCCC--ccc-cchHHHHhhcCCCCCCHHHHHHHHHHcCcH-HHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 45543 333 369999987643323334566778888874 445554 469999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
|++|||||||+|||+.++..+.+.|+++. .|||+||||++++ .+||++++|++|++..
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 99999999999999999999999998764 5999999999987 6899999999999863
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=325.20 Aligned_cols=204 Identities=28% Similarity=0.404 Sum_probs=168.7
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEECceeccc---------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVLP--------- 490 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~~--------- 490 (652)
+++|+++|+++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++..
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 3479999999999888899999999999999999999999999999999998 58999999999976521
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh---------cc----HHHHHHHHhhCCCChhhhccCcC-CCCHHHHHHHHHHH
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED---------WR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAFCK 556 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~---------~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqrqrv~LAr 556 (652)
++....+...+++..++.+++...... .. ...+.++++.+++.....++++. .|||||||||+|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 111111223455667888887643210 01 13467789999996445678887 59999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-ccEEEEEeCCEEEeecCChh
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYN 626 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~drvi~l~~g~i~~~~g~~~ 626 (652)
||+.+|+||||||||++||+.+++.+.++|+++ +.|||+||||++++..+ ||++++|++|++. +.|+++
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~-~~~~~~ 237 (252)
T CHL00131 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII-KTGDAE 237 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE-EecChh
Confidence 999999999999999999999999999999865 46999999999999887 8999999999997 457766
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=304.27 Aligned_cols=194 Identities=27% Similarity=0.432 Sum_probs=172.2
Q ss_pred EEEEEeeeeEeCCee--eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----cceeccc
Q 006275 424 VVTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQN 496 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~--vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----~~~~~~~ 496 (652)
++.+++++.+|++++ +|+|+|++|.+||.++++||+||||||||++++|+.+|+.|+|.++|..+. .+.++|+
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 578899999999876 999999999999999999999999999999999999999999999998773 2456665
Q ss_pred ccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
+.+.|.+++.+|+.++... .+.+.+.+.|..+|+. +..++++.+|||||||||.|||||+.+|++|+||||
T Consensus 83 --~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~-~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEP 159 (259)
T COG4525 83 --EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE-GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEP 159 (259)
T ss_pred --CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc-cccccceEeecchHHHHHHHHHHhhcCcceEeecCc
Confidence 4688999999999997542 2234577889999995 667999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEe--CCEEEe
Q 006275 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK--GSNLQD 620 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~--~g~i~~ 620 (652)
+++||.-+++.|++++.+. ++.+++||||++++.-+++|+++|. .|++++
T Consensus 160 fgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 160 FGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 9999999999999988643 5789999999999999999999998 467764
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=317.00 Aligned_cols=185 Identities=25% Similarity=0.364 Sum_probs=156.4
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEec
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~Q 168 (652)
|+++|+++.|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 478999999999899999999999999999999999999999999999999999999998753 35899999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++..|+.+|+..... . .. .. +..+.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~---------------~--------------------------~~-~~-~~~~~~~l~~~~l 117 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAA---------------I--------------------------HG-GA-QRTIEDALAAVGL 117 (198)
T ss_pred CcccccCCcHHHHHHHHHH---------------H--------------------------cC-Cc-HHHHHHHHHHcCC
Confidence 9877777899999752100 0 00 00 2245567788888
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCe
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ 325 (652)
. +..++++.+|||||||||+||||++.+|++|||||||++||+.+++.+.++|+ +.|.|||++||+...+ .|++
T Consensus 118 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~ 194 (198)
T TIGR01189 118 T-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEAR 194 (198)
T ss_pred H-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceE
Confidence 6 56788899999999999999999999999999999999999999999988875 3588999999998666 4677
Q ss_pred EEE
Q 006275 326 IVE 328 (652)
Q Consensus 326 ii~ 328 (652)
++.
T Consensus 195 ~~~ 197 (198)
T TIGR01189 195 ELR 197 (198)
T ss_pred Eee
Confidence 664
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=360.59 Aligned_cols=202 Identities=24% Similarity=0.303 Sum_probs=174.7
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------cc
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~ 491 (652)
++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 5799999999999889999999999999999999999999999999999999999999999997652 23
Q ss_pred eecccccccCCCCCCHHHHHHHhhh------h-------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAE------D-------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~------~-------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
|++|+ ..+++..|+.+|+..... . .....+.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 84 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 84 IIYQE--LSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred EEeec--ccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHH
Confidence 44443 345677899999975321 0 0123467889999995 567999999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|++. +.|+++++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 232 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDV 232 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhC
Confidence 9999999999999999999999999998764 469999999999999999999999999996 55766654
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=324.48 Aligned_cols=203 Identities=22% Similarity=0.332 Sum_probs=170.8
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~--------- 489 (652)
+|+++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 69999999999888899999999999999999999999999999999999974 8999999997652
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhh---c----cHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHHH
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~----~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.++.+|. ..++. .|+.+|+...... . ....+.++++.+++.. ...++++.+||||||||++|||
T Consensus 83 ~~~i~~~~q~--~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~ 159 (250)
T PRK14262 83 RKKVGMVFQK--PTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR 159 (250)
T ss_pred hhhEEEEecC--CccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence 1233443 23444 8999999764321 1 1223567788888742 2468899999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|++.. .|+.++..+
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 234 (250)
T PRK14262 160 ALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE-YGPTREIVE 234 (250)
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHHh
Confidence 999999999999999999999999999999876 3599999999999999999999999999974 577776544
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=335.73 Aligned_cols=209 Identities=28% Similarity=0.419 Sum_probs=175.4
Q ss_pred CCCCCcEEEEEeeeeEeC--CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceecc-
Q 006275 418 GRSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL- 489 (652)
Q Consensus 418 ~~~~~~~i~~~~v~~~y~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~- 489 (652)
.|+..++|+++|++++|. .+++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 74 ~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 467778899999999995 3579999999999999999999999999999999999986 57999999998863
Q ss_pred -----------cceecccccccCCCCCCHHHHHHHhhhh--cc-H----HHHHHHHhhCCCCh---hhhccCcCCCCHHH
Q 006275 490 -----------PNYFEQNQAEALDLDKTVLETVAEAAED--WR-I----DDIKGLLGRCNFKA---DMLDRKVSLLSGGE 548 (652)
Q Consensus 490 -----------~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~~-~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGq 548 (652)
.+|++|.+ . .+..|+++|+.+.... .. . ..+..+++.+++.. ...++++.+|||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~--~-~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGq 230 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKP--T-PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQ 230 (329)
T ss_pred cccchHhhhccEEEEecCC--c-cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHH
Confidence 12444432 2 3468999999864321 11 1 12566788887632 34578899999999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChh
Q 006275 549 KARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (652)
Q Consensus 549 rqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~ 626 (652)
||||+|||||+.+|+||||||||++||+.+...+.+.|+++. .|||+|||+++++.++||||++|++|++.+ .|+++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e-~g~~~ 309 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE-AGETK 309 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHH
Confidence 999999999999999999999999999999999999998763 699999999999999999999999999985 58888
Q ss_pred hHhh
Q 006275 627 VCFT 630 (652)
Q Consensus 627 ~~~~ 630 (652)
+...
T Consensus 310 ~l~~ 313 (329)
T PRK14257 310 TIFI 313 (329)
T ss_pred HHhc
Confidence 8764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=329.05 Aligned_cols=205 Identities=25% Similarity=0.407 Sum_probs=172.7
Q ss_pred CcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 346999999999975 45999999999999999999999999999999999999999999999998752
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
.+|++|+.. ..++..++.+|+.+.... .....+.++++.+++. +..++++.+||||||||++|||||+.+|+
T Consensus 85 i~~v~q~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 85 IGIVFQNPD-NQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred eeEEEeChH-HhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 134454421 235567889988764321 1123467889999985 67789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|||||||++||+.++..+.+.|+++ +.|||+|||+++++.. |||+++|++|++.. .|++++..+
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~~~~ 231 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYK-EGTPTEIFD 231 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE-ecCHHHHhc
Confidence 99999999999999999999999764 4599999999999986 99999999999974 577776544
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=316.73 Aligned_cols=195 Identities=27% Similarity=0.380 Sum_probs=152.2
Q ss_pred eEEEeEEEEeCCe-----eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCcc
Q 006275 98 VKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (652)
Q Consensus 98 i~v~~ls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~ 172 (652)
|+++|++++|++. ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---~i~~~~q~~~l 77 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---SIAYVSQEPWI 77 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---EEEEEecCchh
Confidence 4789999999764 699999999999999999999999999999999999999999999986 79999999987
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccc
Q 006275 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (652)
Q Consensus 173 ~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (652)
+ ..|++||+....... . +......+. ..+...+... ..|+. ..
T Consensus 78 ~-~~t~~enl~~~~~~~--~----~~~~~~~~~---------------------------~~l~~~~~~~--~~~~~-~~ 120 (204)
T cd03250 78 Q-NGTIRENILFGKPFD--E----ERYEKVIKA---------------------------CALEPDLEIL--PDGDL-TE 120 (204)
T ss_pred c-cCcHHHHhccCCCcC--H----HHHHHHHHH---------------------------cCcHHHHHhc--cCccc-ce
Confidence 5 679999986321100 0 000000000 0001111110 11222 23
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH-HHc---cCCCeEEEEecCHHHHHhhcCeEEE
Q 006275 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLG---KQDVPMVIISHDRAFLDQLCTKIVE 328 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~-~L~---~~g~tvIivsHd~~~l~~~~d~ii~ 328 (652)
.++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.+ +++ +.+.|||++||+++.+.. ||++++
T Consensus 121 ~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~ 199 (204)
T cd03250 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVV 199 (204)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEE
Confidence 456689999999999999999999999999999999999999988876 443 347899999999999987 999999
Q ss_pred EcCCe
Q 006275 329 TEMGV 333 (652)
Q Consensus 329 l~~G~ 333 (652)
|++|+
T Consensus 200 l~~G~ 204 (204)
T cd03250 200 LDNGR 204 (204)
T ss_pred EeCCC
Confidence 99874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=323.55 Aligned_cols=203 Identities=25% Similarity=0.359 Sum_probs=169.8
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEECceecc--------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-----GGEVLLGEHNVL-------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~~~-------- 489 (652)
++|+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4699999999999888999999999999999999999999999999999999997 699999997652
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhh---c----cHHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~----~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|++|+ ..+++ .|+.+|+...... . ....+.++++.+++. .+..++++.+||||||||++||
T Consensus 83 ~~~~i~~v~q~--~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 159 (251)
T PRK14249 83 LRKRVGMVFQQ--PNPFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA 159 (251)
T ss_pred hhceEEEEecC--CccCc-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 1244443 23444 5999999764321 1 113355567777763 2356889999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
|||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|++.. .|+.++..
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 234 (251)
T PRK14249 160 RVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE-YGRTGEIF 234 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE-eCCHHHHH
Confidence 9999999999999999999999999999999876 3699999999999999999999999999974 57776653
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=332.28 Aligned_cols=224 Identities=20% Similarity=0.307 Sum_probs=172.3
Q ss_pred CCCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCCC--------
Q 006275 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (652)
Q Consensus 94 ~~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~i~~~~~~-------- 160 (652)
...+|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred CCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 3456999999999998889999999999999999999999999999999999986 689999998732
Q ss_pred ----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHH
Q 006275 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (652)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (652)
..|+|++|++.+++ .||+||+...+..... ....+ ....+ ..-......
T Consensus 122 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~-------~~~~~---------~~~~~----------~~~~~~~~~ 174 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGD-------INTGL---------LARLL----------GRDDKDAED 174 (305)
T ss_pred HHHhhceEEEccCCcccc-ccHHHHHHhHHhhccc-------ccccc---------ccccc----------ccCchHHHH
Confidence 25999999987655 5999998643210000 00000 00000 000001123
Q ss_pred HHHHHHhhhcCCCc---ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEE
Q 006275 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (652)
Q Consensus 237 ~~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIi 311 (652)
..+.++++.+++.. ...++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++ .+.|||+
T Consensus 175 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiii 254 (305)
T PRK14264 175 ELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVV 254 (305)
T ss_pred HHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 44566777777631 345778899999999999999999999999999999999999999999988753 2589999
Q ss_pred EecCHHHHHhhcCeE-EEEcCCeEEEecCChHHHH
Q 006275 312 ISHDRAFLDQLCTKI-VETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 312 vsHd~~~l~~~~d~i-i~l~~G~~~~~~g~~~~~~ 345 (652)
|||+++++..+||++ ++|++|++. ..|+.+++.
T Consensus 255 vtH~~~~i~~~~d~i~~~l~~G~i~-~~g~~~~~~ 288 (305)
T PRK14264 255 VTHNMQQAARISDQTAVFLTGGELV-EYDDTDKIF 288 (305)
T ss_pred EEcCHHHHHHhcCEEEEEecCCEEE-EeCCHHHHH
Confidence 999999999999997 567999884 567766543
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=318.24 Aligned_cols=189 Identities=21% Similarity=0.308 Sum_probs=161.3
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------ceEEEEecc
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQE 169 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------~~i~~v~Q~ 169 (652)
+|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 4899999999988889999999999999999999999999999999999999999999998743 258999998
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+++..|+.+|+..... + .. ..++++.++++.+|+.
T Consensus 82 ~~~~~~~tv~~~l~~~~~---------------~--------------------------~~--~~~~~~~~~l~~~~l~ 118 (207)
T PRK13539 82 NAMKPALTVAENLEFWAA---------------F--------------------------LG--GEELDIAAALEAVGLA 118 (207)
T ss_pred CcCCCCCcHHHHHHHHHH---------------h--------------------------cC--CcHHHHHHHHHHcCCH
Confidence 777778899999742100 0 00 0012356778888886
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeE
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~i 326 (652)
+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .|+|||++||+++++.. |++
T Consensus 119 -~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~ 195 (207)
T PRK13539 119 -PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARE 195 (207)
T ss_pred -HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcE
Confidence 466888999999999999999999999999999999999999999999888753 58999999999999976 999
Q ss_pred EEEcC
Q 006275 327 VETEM 331 (652)
Q Consensus 327 i~l~~ 331 (652)
+.++.
T Consensus 196 ~~~~~ 200 (207)
T PRK13539 196 LDLGP 200 (207)
T ss_pred EeecC
Confidence 88754
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=315.84 Aligned_cols=186 Identities=28% Similarity=0.467 Sum_probs=162.9
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------cceecc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQ 495 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~~ 495 (652)
|+++|+++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|+.|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 47899999999889999999999999999999999999999999999999999999999997652 123333
Q ss_pred cccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q 006275 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD 575 (652)
...+.+..|+.+|+...........+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 81 --~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 157 (201)
T cd03231 81 --APGIKTTLSVLENLRFWHADHSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157 (201)
T ss_pred --ccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 234556789999997754333445678899999995 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEE
Q 006275 576 IPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV 613 (652)
Q Consensus 576 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l 613 (652)
+.+++.+.+.|.++ +.|+|+||||...+..+|++++++
T Consensus 158 ~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 158 KAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999765 569999999999999999999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=323.05 Aligned_cols=205 Identities=25% Similarity=0.348 Sum_probs=169.6
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC--C---CeeEEEECceecc-------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--P---RGGEVLLGEHNVL------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~--p---~~G~i~~~g~~~~------- 489 (652)
+.+|+++||+++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 457999999999998889999999999999999999999999999999999975 5 5899999997652
Q ss_pred -----cceecccccccCCCCCCHHHHHHHhhhhc---c----HHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHH
Q 006275 490 -----PNYFEQNQAEALDLDKTVLETVAEAAEDW---R----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 -----~~~~~~~~~~~~~~~~tv~e~~~~~~~~~---~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~L 554 (652)
.+|+.|. ..+++ .|+.+|+....... . .+.+.+.++.+++. .+..++.+.+||||||||++|
T Consensus 83 ~~~~~i~~~~q~--~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~l 159 (252)
T PRK14255 83 QLRKQVGMVFQQ--PNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCI 159 (252)
T ss_pred HhcCeEEEEECC--CccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHH
Confidence 1244443 23444 69999997643211 1 23355667777653 235678999999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++.++||+|++|++|++.. .|+..+...
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 236 (252)
T PRK14255 160 ARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE-FADTKQMFL 236 (252)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHHhc
Confidence 99999999999999999999999999999999876 3699999999999999999999999999985 466655543
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=316.15 Aligned_cols=184 Identities=21% Similarity=0.325 Sum_probs=157.6
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEec
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~Q 168 (652)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 789999999998889999999999999999999999999999999999999999999998753 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++..||++|+...... . ..+..+.++++.+++
T Consensus 82 ~~~~~~~~tv~~~~~~~~~~------------------------------------------~--~~~~~~~~~l~~~~l 117 (200)
T PRK13540 82 RSGINPYLTLRENCLYDIHF------------------------------------------S--PGAVGITELCRLFSL 117 (200)
T ss_pred ccccCcCCCHHHHHHHHHhc------------------------------------------C--cchHHHHHHHHHcCC
Confidence 98877789999997521100 0 001234567777887
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCe
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~ 325 (652)
. +..++++.+||||||||++||||++.+|++|||||||+|||+.+++++.++|++ .+.|||++||+.+++.. ||+
T Consensus 118 ~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 118 E-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADY 195 (200)
T ss_pred c-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cch
Confidence 5 456788899999999999999999999999999999999999999999988753 58899999999999955 776
Q ss_pred EE
Q 006275 326 IV 327 (652)
Q Consensus 326 ii 327 (652)
-+
T Consensus 196 ~~ 197 (200)
T PRK13540 196 EE 197 (200)
T ss_pred hh
Confidence 44
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=326.10 Aligned_cols=207 Identities=24% Similarity=0.401 Sum_probs=161.5
Q ss_pred eEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEE
Q 006275 98 VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (652)
Q Consensus 98 i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~ 164 (652)
|+++|+++.|++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999964 469999999999999999999999999999999999999999999998732 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.++. .|++||+....... . . +.+....+ ... +.+++.
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~-~-~---~~~~~~~~---------------------------~~~----~~~~~~ 123 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDA-T-D---EEVEEAAK---------------------------KAN----IHDFIM 123 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCC-C-H---HHHHHHHH---------------------------HcC----hHHHHH
Confidence 9999987654 69999985321100 0 0 00000000 000 112222
Q ss_pred hc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006275 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (652)
.+ |+. ...++.+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||++||+++++.
T Consensus 124 ~l~~~~~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 124 SLPDGYD-TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred hhccccc-eeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 22 332 345677899999999999999999999999999999999999999999988743 5789999999999996
Q ss_pred hhcCeEEEEcCCeEEEecCChHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
.||++++|++|++ .+.|+.+++
T Consensus 203 -~~d~v~~l~~G~i-~~~~~~~~~ 224 (238)
T cd03249 203 -NADLIAVLQNGQV-VEQGTHDEL 224 (238)
T ss_pred -hCCEEEEEECCEE-EEeCCHHHH
Confidence 8999999999997 466765544
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=323.13 Aligned_cols=201 Identities=24% Similarity=0.463 Sum_probs=163.6
Q ss_pred EEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cce
Q 006275 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (652)
Q Consensus 425 i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (652)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999963 57999999999999999999999999999999999999999999999997652 235
Q ss_pred ecccccccCCCCCCHHHHHHHhhhhccHHHH---------HHHHhhC--CCChhhhccCcCCCCHHHHHHHHHHHHHccC
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDI---------KGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~---------~~~L~~~--~l~~~~~~~~~~~LSgGqrqrv~LAral~~~ 561 (652)
++|+. .+ +..|+.+|+...........+ .+.+..+ ++. ...++++.+|||||||||+|||||+.+
T Consensus 81 ~~q~~--~~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 81 VLQEN--VL-FNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYD-TIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EcCCc--hh-ccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCccccc-chhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 55543 33 357999999764321112222 2333333 332 335678899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|++|||||||++||+.++..+.+.|+++ +.|||++|||++++. .||++++|++|++. ..|+++++.+.
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~~ 226 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIV-EQGSHDELLAE 226 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EEcCHHHHHhc
Confidence 9999999999999999999999999875 359999999999996 59999999999997 45777776654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=328.71 Aligned_cols=203 Identities=29% Similarity=0.383 Sum_probs=172.2
Q ss_pred EEEEEeeeeEeCC---eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------c
Q 006275 424 VVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (652)
Q Consensus 424 ~i~~~~v~~~y~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (652)
+|+++||+++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 6999999999974 35999999999999999999999999999999999999999999999998753 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh--cc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+|++|+.. ...+..|+.+|+...... .. .+.+..+++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 84 ~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 84 GMVFQNPD-NQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred EEEEECHH-HhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 35555421 235568999999764321 11 23467889999984 678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||||||++||+.++..+.++|.++ +.|||+||||++++. .||++++|++|++.. .|+++++..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~~ 229 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIK-EAAPSELFA 229 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999998754 569999999999997 599999999999874 577776654
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=329.78 Aligned_cols=198 Identities=22% Similarity=0.384 Sum_probs=159.5
Q ss_pred eEEEeEEEEeC--CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 98 i~v~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|.+ ..|+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 89999999994 4679999999999999999999999999999999999998 78999998843 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++ .|+++|+.. +.. .. .+++.++++.
T Consensus 82 v~q~~~lf~-~tv~~nl~~-~~~-~~--------------------------------------------~~~~~~~l~~ 114 (275)
T cd03289 82 IPQKVFIFS-GTFRKNLDP-YGK-WS--------------------------------------------DEEIWKVAEE 114 (275)
T ss_pred ECCCcccch-hhHHHHhhh-ccC-CC--------------------------------------------HHHHHHHHHH
Confidence 999998864 699999841 100 00 0011112222
Q ss_pred cCCCcccccC-----------CCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 246 LGFTADDGDR-----------LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 246 lgl~~~~~~~-----------~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
+|+. ...++ ....||||||||++|||||+.+|+||||||||++||+.++..+.+.|++ .++|||+|
T Consensus 115 ~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~i 193 (275)
T cd03289 115 VGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILS 193 (275)
T ss_pred cCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2322 11222 2456999999999999999999999999999999999999999988863 47899999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
||+++++.. ||||++|++|++. +.|++.+++.
T Consensus 194 sH~~~~i~~-~dri~vl~~G~i~-~~g~~~~l~~ 225 (275)
T cd03289 194 EHRIEAMLE-CQRFLVIEENKVR-QYDSIQKLLN 225 (275)
T ss_pred ECCHHHHHh-CCEEEEecCCeEe-ecCCHHHHhh
Confidence 999999965 9999999999984 6688777655
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=326.60 Aligned_cols=206 Identities=28% Similarity=0.375 Sum_probs=172.3
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceeccc-----
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVLP----- 490 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~~----- 490 (652)
..++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 22 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 22 EQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 3457999999999988899999999999999999999999999999999999987 489999999977521
Q ss_pred -------ceecccccccCCCCCCHHHHHHHhhhh----c---cHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHH
Q 006275 491 -------NYFEQNQAEALDLDKTVLETVAEAAED----W---RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLA 553 (652)
Q Consensus 491 -------~~~~~~~~~~~~~~~tv~e~~~~~~~~----~---~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~ 553 (652)
+|++|. ..+++ .|+.+|+...... . ....+.++++.+++.. ...++.+.+||||||||++
T Consensus 102 ~~~~~~i~~v~q~--~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 102 AELRRRVGMVFQR--PNPFP-KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred HHHhccEEEEecC--CccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 234443 23444 4999999764221 1 1234667788888742 3567889999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 554 LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+|||+++++..+|||+++|++|++.. .|+.+++..
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 256 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE-YGDTDTLFT 256 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe-cCCHHHHhc
Confidence 999999999999999999999999999999999876 3699999999999999999999999999974 577776653
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=371.83 Aligned_cols=212 Identities=24% Similarity=0.422 Sum_probs=170.0
Q ss_pred CceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
..|+++|++|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 35999999999953 569999999999999999999999999999999999999999999999854 269
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
|||+|++.+ ++.|++||+..+-. .. .+++.++++.+ .+.+.+..+
T Consensus 530 ~~v~Q~~~l-f~gTI~eNi~~~~~--~~----~e~i~~al~~a---------------------------~l~~~i~~l- 574 (686)
T TIGR03797 530 GVVLQNGRL-MSGSIFENIAGGAP--LT----LDEAWEAARMA---------------------------GLAEDIRAM- 574 (686)
T ss_pred EEEccCCcc-CcccHHHHHhcCCC--CC----HHHHHHHHHHc---------------------------CcHHHHHhc-
Confidence 999999987 67899999964211 00 01122222211 111122211
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhc
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~ 323 (652)
..|+.+..++ ...+||||||||++|||||+++|+|||||||||+||+++.+.+.+.|++.++|+|+|||+++.+. .|
T Consensus 575 -p~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~-~~ 651 (686)
T TIGR03797 575 -PMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIR-NA 651 (686)
T ss_pred -cccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHH-cC
Confidence 1244433333 36889999999999999999999999999999999999999999999877899999999999995 59
Q ss_pred CeEEEEcCCeEEEecCChHHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
|+|++|++|++ ...|++++++.
T Consensus 652 D~Iivl~~G~i-v~~G~~~~Ll~ 673 (686)
T TIGR03797 652 DRIYVLDAGRV-VQQGTYDELMA 673 (686)
T ss_pred CEEEEEECCEE-EEECCHHHHHh
Confidence 99999999998 47899887654
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=373.94 Aligned_cols=213 Identities=23% Similarity=0.394 Sum_probs=170.1
Q ss_pred CceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
..|+++|++|+|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 45999999999974 569999999999999999999999999999999999999999999999854 369
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+||+|++++ ++.|++||+...-.+ .. .+++.++++.++ +.+.+..+
T Consensus 556 ~~v~Q~~~l-f~gTi~eNi~l~~~~-~~----~~~i~~al~~~~---------------------------l~~~i~~l- 601 (710)
T TIGR03796 556 AMVDQDIFL-FEGTVRDNLTLWDPT-IP----DADLVRACKDAA---------------------------IHDVITSR- 601 (710)
T ss_pred eEEecCChh-hhccHHHHhhCCCCC-CC----HHHHHHHHHHhC---------------------------CHHHHHhC-
Confidence 999999987 678999999632110 00 011222222111 11111111
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhc
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~ 323 (652)
..|+.+...+ ...+||||||||++|||||+++|+|||||||||+||+++++.+.+.|++.++|+|+|||+++.+. .|
T Consensus 602 -p~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~-~~ 678 (710)
T TIGR03796 602 -PGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIR-DC 678 (710)
T ss_pred -cCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hC
Confidence 1144443333 36889999999999999999999999999999999999999999999888999999999999995 59
Q ss_pred CeEEEEcCCeEEEecCChHHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
|+|++|++|++ ...|++++++.
T Consensus 679 D~Iivl~~G~i-~~~G~~~~Ll~ 700 (710)
T TIGR03796 679 DEIIVLERGKV-VQRGTHEELWA 700 (710)
T ss_pred CEEEEEeCCEE-EEecCHHHHHH
Confidence 99999999998 47798887654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=358.03 Aligned_cols=200 Identities=24% Similarity=0.352 Sum_probs=172.7
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------cc
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~ 491 (652)
++|+++|++++|+++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 4799999999999889999999999999999999999999999999999999999999999997652 13
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh--------cc--HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccC
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED--------WR--IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~--------~~--~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~ 561 (652)
|++|+ ..+.+.+|+.+|+.+.... +. ...+.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 83 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (501)
T PRK10762 83 IIHQE--LNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFE 159 (501)
T ss_pred EEEcc--hhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHhcC
Confidence 45554 3466788999999764210 11 23467889999995 567899999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChh
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~ 626 (652)
|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|++.. .|..+
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~-~~~~~ 226 (501)
T PRK10762 160 SKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA-EREVA 226 (501)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ecCcC
Confidence 9999999999999999999999988764 4699999999999999999999999999874 34443
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=322.26 Aligned_cols=186 Identities=28% Similarity=0.380 Sum_probs=158.4
Q ss_pred eEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------cceecccccccCC
Q 006275 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQNQAEALD 502 (652)
Q Consensus 432 ~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~~~~~~~~~ 502 (652)
+.|+.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|+.+. ...++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQ-KTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCC-ccccC
Confidence 5567778999999999999999999999999999999999999999999999987642 1233321 23455
Q ss_pred CCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q 006275 503 LDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (652)
Q Consensus 503 ~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~ 576 (652)
+..|+.+++...... . ....+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE-ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 678999998654321 1 123466788999984 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 577 PSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 577 ~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
.+++.+.++|.++ +.|||+||||++++..+||++++|++|++.
T Consensus 187 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999875 459999999999999999999999999986
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=324.54 Aligned_cols=203 Identities=26% Similarity=0.367 Sum_probs=170.5
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-----GGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~~~--------- 489 (652)
+|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 599999999998888999999999999999999999999999999999999985 899999997652
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhh------cc-HHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHHH
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED------WR-IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~-~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.++++|+ ..+++ .|+.+|+...... .. ...+.++++.+++.. ...++++.+||||||||++|||
T Consensus 87 ~~~i~~~~q~--~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 87 RRQVSMVHPK--PNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred hccEEEEecC--CccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 1123333 23444 8999999764211 11 234567888888732 3568899999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeC-----CEEEeecCChhh
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG-----SNLQDYAGDYNV 627 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~-----g~i~~~~g~~~~ 627 (652)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||||++|++ |+++ ..|++++
T Consensus 164 al~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~ 242 (261)
T PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV-EFGLTKK 242 (261)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE-EeCCHHH
Confidence 999999999999999999999999999998763 56999999999999999999999998 9987 4588887
Q ss_pred Hhh
Q 006275 628 CFT 630 (652)
Q Consensus 628 ~~~ 630 (652)
..+
T Consensus 243 ~~~ 245 (261)
T PRK14258 243 IFN 245 (261)
T ss_pred HHh
Confidence 654
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=326.26 Aligned_cols=207 Identities=26% Similarity=0.341 Sum_probs=171.9
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc------
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------ 489 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~------ 489 (652)
..++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 17 ~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 44579999999999988899999999999999999999999999999999999863 6899999997652
Q ss_pred ------cceecccccccCCCCCCHHHHHHHhhhhc-----cHHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHHH
Q 006275 490 ------PNYFEQNQAEALDLDKTVLETVAEAAEDW-----RIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 ------~~~~~~~~~~~~~~~~tv~e~~~~~~~~~-----~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~LA 555 (652)
.+|++|+. .+++ .|+.+|+....... ....+.+.++.+++. .+..++++.+|||||||||+||
T Consensus 97 ~~~~~~i~~v~q~~--~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 97 VKLRRQVGMVFQRP--NPFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred HHHhhcEEEEccCC--cccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 12444442 3343 59999997643211 123355667777763 2356789999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEe---------CCEEEeecCC
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVK---------GSNLQDYAGD 624 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~---------~g~i~~~~g~ 624 (652)
|||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++.++|||+++|+ +|++++ .|+
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~-~g~ 252 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE-FSP 252 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE-eCC
Confidence 9999999999999999999999999999999876 3599999999999999999999997 799874 588
Q ss_pred hhhHhhh
Q 006275 625 YNVCFTS 631 (652)
Q Consensus 625 ~~~~~~~ 631 (652)
.++....
T Consensus 253 ~~~~~~~ 259 (274)
T PRK14265 253 TEQMFGS 259 (274)
T ss_pred HHHHHhC
Confidence 8877543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=359.82 Aligned_cols=212 Identities=23% Similarity=0.402 Sum_probs=174.9
Q ss_pred CCceEEEeEEEEeC-----------CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---
Q 006275 95 SSGVKLENISKSYK-----------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~-----------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--- 160 (652)
.++|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 45799999999995 3569999999999999999999999999999999999985 89999998732
Q ss_pred ----------ceEEEEeccC--ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHH
Q 006275 161 ----------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (652)
Q Consensus 161 ----------~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (652)
.+++|++|++ .+++..||.||+...+.. .. .
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~---------------~~----------------------~ 394 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV---------------HQ----------------------P 394 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh---------------cc----------------------c
Confidence 2599999997 366678999998532100 00 0
Q ss_pred hCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----c
Q 006275 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (652)
Q Consensus 229 ~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~ 304 (652)
..+......++.++++.+|+..+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 001112234567788899996446789999999999999999999999999999999999999999999998875 2
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 305 ~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.|+|||+||||++++..+||+|++|++|++ ...|+.+++.
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i-~~~~~~~~~~ 514 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEV-VEQGDCERVF 514 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEEEEECCEE-EEEcCHHHHh
Confidence 489999999999999999999999999997 4667765553
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=321.35 Aligned_cols=201 Identities=25% Similarity=0.440 Sum_probs=164.8
Q ss_pred EEEEeeeeEeCCe--eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cce
Q 006275 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (652)
Q Consensus 425 i~~~~v~~~y~~~--~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (652)
|+++|++++|+++ .+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999865 7999999999999999999999999999999999999999999999997652 234
Q ss_pred ecccccccCCCCCCHHHHHHHhhhhccHHH---------HHHHHhhC--CCChhhhccCcCCCCHHHHHHHHHHHHHccC
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDD---------IKGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~---------~~~~L~~~--~l~~~~~~~~~~~LSgGqrqrv~LAral~~~ 561 (652)
++|+. .++ ..|+.+|+........... +.+.++.+ ++. ...++++.+||||||||++|||||+.+
T Consensus 81 ~~q~~--~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 81 VSQDV--FLF-NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYD-TVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred eCCCC--eec-cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 44442 333 4799999976532222122 23344444 443 345778899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++.. ||++++|++|++. ..|+++++...
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~~~ 226 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIV-ERGTHEELLAQ 226 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEe-eeCCHHHHHHc
Confidence 9999999999999999999999999876 4599999999999976 9999999999997 46777776544
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=342.21 Aligned_cols=199 Identities=28% Similarity=0.318 Sum_probs=170.9
Q ss_pred eeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECce----ecc--------------c
Q 006275 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH----NVL--------------P 490 (652)
Q Consensus 429 ~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~----~~~--------------~ 490 (652)
++.++|+...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++. .
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 4567788888999999999999999999999999999999999999999999999985 221 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+|++|. ..+++..|+.+|+.+.... .....+.++++.+|+. +..++++.+|||||||||+|||||+.+|+|
T Consensus 109 ~~vfQ~--~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 109 SMVFQK--FALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred EEEECC--CcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 344443 4567789999999875321 1234577899999995 678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||||||++||+.++..+++.|.++ +.|||+||||++++.++||||++|++|++.. .|+++++...
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~-~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ-HGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHhhC
Confidence 9999999999999999999988754 5699999999999999999999999999974 5887776543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=316.02 Aligned_cols=183 Identities=34% Similarity=0.485 Sum_probs=157.3
Q ss_pred EEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------cce
Q 006275 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------PNY 492 (652)
Q Consensus 427 ~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~~~ 492 (652)
++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 468999999889999999999999999999999999999999999999999999999998731 123
Q ss_pred ecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
+.|. ..+++..|+.+|+...... ...+.+.++++.+++. ...++++.+||||||||++|||||+.+|++||
T Consensus 81 ~~q~--~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~lll 157 (206)
T TIGR03608 81 LFQN--FALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLIL 157 (206)
T ss_pred Eecc--hhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3333 3456678999999764321 1234577899999994 66799999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEE
Q 006275 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV 613 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l 613 (652)
|||||++||+.+++.+.++|+++ +.|||+|||+++++ .+||++++|
T Consensus 158 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 99999999999999999999865 46999999999977 579999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=343.69 Aligned_cols=210 Identities=29% Similarity=0.411 Sum_probs=165.7
Q ss_pred eEEEeEEEEeCCe-eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEE
Q 006275 98 VKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (652)
Q Consensus 98 i~v~~ls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v 166 (652)
++++|+++.|++. ++++|+||++++|+.++|||+||||||||+++|+|+.+|++|+|.++|.+ .+++||
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 4455999999765 89999999999999999999999999999999999999999999999864 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh-
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE- 245 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~- 245 (652)
+|+|.+ +..|++||+..+-.+. . -+++.++++. . .+.+.++.
T Consensus 401 ~Q~p~l-f~gTireNi~l~~~~~-s----~e~i~~al~~--------------a-----------------~l~~~v~~p 443 (559)
T COG4988 401 SQNPYL-FAGTIRENILLARPDA-S----DEEIIAALDQ--------------A-----------------GLLEFVPKP 443 (559)
T ss_pred CCCCcc-ccccHHHHhhccCCcC-C----HHHHHHHHHH--------------h-----------------cHHHhhcCC
Confidence 999987 6789999996322110 0 0111111111 1 01111221
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~ 323 (652)
-|+++..++ ....|||||+|||+|||||+.+++++||||||+|||.++.+.+.+.|.+ +++|+|+|||+++.+. -|
T Consensus 444 ~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~-~~ 521 (559)
T COG4988 444 DGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAA-DA 521 (559)
T ss_pred Ccccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHh-cC
Confidence 244433333 3678999999999999999999999999999999999999999887743 4799999999999995 49
Q ss_pred CeEEEEcCCeEEEecCChHHHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
|+|++|++|++ +..|++++....
T Consensus 522 D~I~vld~G~l-~~~g~~~~L~~~ 544 (559)
T COG4988 522 DRIVVLDNGRL-VEQGTHEELSEK 544 (559)
T ss_pred CEEEEecCCce-eccCCHHHHhhc
Confidence 99999999998 578888876544
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=304.46 Aligned_cols=204 Identities=30% Similarity=0.445 Sum_probs=175.8
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc----------cee
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------NYF 493 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------~~~ 493 (652)
||+.+|++++..++.+++++||++++||+.||+||||||||||||.|+|.+.|++|++.++|.++.. ..+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 5899999999999999999999999999999999999999999999999999999999999987531 234
Q ss_pred cccccccCCCCCCHHHHHHHhhhhc------cHHH--HHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc-----
Q 006275 494 EQNQAEALDLDKTVLETVAEAAEDW------RIDD--IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK----- 560 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~--~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~----- 560 (652)
+|+ ..+-+..||.|.+..+...+ ..+. +..+|.+.++. .+..+...+|||||||||.|||+|++
T Consensus 81 pQ~--s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~-~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 81 PQN--SSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred ccC--cccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh-hhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 444 35667789999998864322 1222 67889999884 67889999999999999999999986
Q ss_pred -CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 561 -PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 561 -~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
++++|+||||||+||+..+....++.+++ +..|+.|-||++.+..|||||++|.+|+++ ..|++.+.+..
T Consensus 158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~-a~g~p~~vlt~ 231 (259)
T COG4559 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI-ASGSPQDVLTD 231 (259)
T ss_pred CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEe-ecCCHHHhcCH
Confidence 34699999999999999999999999877 459999999999999999999999999997 57888876543
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=322.72 Aligned_cols=202 Identities=26% Similarity=0.363 Sum_probs=169.7
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~--------- 489 (652)
+++++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 58999999999988999999999999999999999999999999999999986 5999999997652
Q ss_pred --cceecccccccCCCCCCHHHHHHHhhhhc-------cHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHHHH
Q 006275 490 --PNYFEQNQAEALDLDKTVLETVAEAAEDW-------RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 490 --~~~~~~~~~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LAra 557 (652)
.+|.+|+ ..+++ .|+.+|+....... ....+.+.++.+++.. +..++++.+|||||||||+||||
T Consensus 83 ~~i~~~~q~--~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 83 IKVGMVFQK--PNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred hheeEEecC--CCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 1244443 23444 79999997643211 1123556777777642 34678899999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
|+.+|+||||||||++||+.++..+.++|++. +.|||+|||+++++..+|||+++|++|++.. .|+.+++.
T Consensus 160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 232 (249)
T PRK14253 160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE-HDDTQVIF 232 (249)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999876 3599999999999999999999999999974 57777654
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=325.23 Aligned_cols=204 Identities=25% Similarity=0.315 Sum_probs=169.7
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceecc--------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL-------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~-------- 489 (652)
++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 47999999999998899999999999999999999999999999999999986 48999999997652
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhhc-----cHHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDW-----RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~~-----~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LAra 557 (652)
.+++.|+ ..+++ .|+.+|+....... ..+.+..+++.+++.. ...++++.+||||||||++||||
T Consensus 89 ~~~~i~~v~q~--~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lara 165 (264)
T PRK14243 89 VRRRIGMVFQK--PNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARA 165 (264)
T ss_pred HhhhEEEEccC--Ccccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHH
Confidence 1244443 23343 59999997643211 1233556677777631 34678899999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEe---------CCEEEeecCChh
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVK---------GSNLQDYAGDYN 626 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~---------~g~i~~~~g~~~ 626 (652)
|+.+|++|||||||++||+.++..+.++|.++. .|||+||||++++.++||||++|+ +|+++ ..|+.+
T Consensus 166 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~-~~~~~~ 244 (264)
T PRK14243 166 IAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV-EFDRTE 244 (264)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE-EeCCHH
Confidence 999999999999999999999999999998763 599999999999999999999998 79987 458887
Q ss_pred hHhh
Q 006275 627 VCFT 630 (652)
Q Consensus 627 ~~~~ 630 (652)
++.+
T Consensus 245 ~~~~ 248 (264)
T PRK14243 245 KIFN 248 (264)
T ss_pred HHHh
Confidence 7754
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=322.84 Aligned_cols=209 Identities=19% Similarity=0.238 Sum_probs=168.7
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCCC---------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~i~~~~~~--------- 160 (652)
...+.++++++.|++.++|+++||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3468999999999988999999999999999999999999999999999999986 79999998742
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..++|++|++.++ ..|+.||+....... . .. .....
T Consensus 86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~---------------~------------------------~~-~~~~~ 124 (261)
T PRK14263 86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLN---------------R------------------------YK-GDLGD 124 (261)
T ss_pred hhhhceEEEecCCccc-cccHHHHHHHHHhhc---------------C------------------------ch-HHHHH
Confidence 2499999998775 689999985321000 0 00 00122
Q ss_pred HHHHHhhhcCCCcc---cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 238 KVSKLMPELGFTAD---DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 238 ~i~~ll~~lgl~~~---~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
++.++++.+|+... ..++++.+|||||+||++|||||+.+|++|||||||+|||+.++.++.++|++ .+.|||++
T Consensus 125 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~i 204 (261)
T PRK14263 125 RVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204 (261)
T ss_pred HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 34455566665321 23567889999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEc--------CCeEEEecCChHHHH
Q 006275 313 SHDRAFLDQLCTKIVETE--------MGVSRTYEGNYSQYV 345 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~--------~G~~~~~~g~~~~~~ 345 (652)
||+++++..+||+|++++ +|+++ ..|+.+++.
T Consensus 205 sH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~-~~g~~~~~~ 244 (261)
T PRK14263 205 THNMQQAIRVADTTAFFSVDISQGTRTGYLV-EMGPTAQIF 244 (261)
T ss_pred eCCHHHHHHhCCEEEEEecccccccCCceEE-EeCCHHHHH
Confidence 999999999999999995 67774 567766543
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=369.27 Aligned_cols=213 Identities=25% Similarity=0.409 Sum_probs=167.3
Q ss_pred CceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ce
Q 006275 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MK 162 (652)
Q Consensus 96 ~~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~ 162 (652)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 45999999999974 469999999999999999999999999999999999999999999999854 26
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|+||+|+|.+ ++.|++||+..+..+. . .+++.++++.+. +...+.++
T Consensus 557 i~~v~Q~~~l-F~gTIreNI~~g~~~~-~----~e~i~~al~~a~---------------------------l~~~i~~l 603 (711)
T TIGR00958 557 VALVGQEPVL-FSGSVRENIAYGLTDT-P----DEEIMAAAKAAN---------------------------AHDFIMEF 603 (711)
T ss_pred ceEEecCccc-cccCHHHHHhcCCCCC-C----HHHHHHHHHHcC---------------------------CHHHHHhC
Confidence 9999999987 6789999996432110 0 011222222111 11111111
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhh
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~ 322 (652)
+ -|+.+..+ ....+||||||||++||||++++|+|||||||||+||+++.+.+.+.....++|+|+|||+++.+. .
T Consensus 604 -p-~GldT~ig-e~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~ 679 (711)
T TIGR00958 604 -P-NGYDTEVG-EKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-R 679 (711)
T ss_pred -C-CccCCccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-h
Confidence 1 14443333 336789999999999999999999999999999999999999998844446899999999999884 5
Q ss_pred cCeEEEEcCCeEEEecCChHHHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
||+|+++++|++ ...|+++++..
T Consensus 680 aD~IivL~~G~i-ve~Gt~~eL~~ 702 (711)
T TIGR00958 680 ADQILVLKKGSV-VEMGTHKQLME 702 (711)
T ss_pred CCEEEEEECCEE-EEeeCHHHHHh
Confidence 999999999998 57788877654
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=308.53 Aligned_cols=162 Identities=33% Similarity=0.478 Sum_probs=144.7
Q ss_pred eEEEeEEEEeCCe--eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEE
Q 006275 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (652)
Q Consensus 98 i~v~~ls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v 166 (652)
|+++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999765 69999999999999999999999999999999999999999999998752 359999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.++ ..|++||+
T Consensus 81 ~q~~~~~-~~tv~~~i---------------------------------------------------------------- 95 (178)
T cd03247 81 NQRPYLF-DTTLRNNL---------------------------------------------------------------- 95 (178)
T ss_pred ccCCeee-cccHHHhh----------------------------------------------------------------
Confidence 9998764 35666552
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcC
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d 324 (652)
+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||++||+++++. .||
T Consensus 96 ----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d 164 (178)
T cd03247 96 ----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMD 164 (178)
T ss_pred ----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCC
Confidence 367999999999999999999999999999999999999999888753 4789999999999995 699
Q ss_pred eEEEEcCCeEE
Q 006275 325 KIVETEMGVSR 335 (652)
Q Consensus 325 ~ii~l~~G~~~ 335 (652)
+++++++|++.
T Consensus 165 ~~~~l~~g~i~ 175 (178)
T cd03247 165 KILFLENGKII 175 (178)
T ss_pred EEEEEECCEEE
Confidence 99999999874
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=342.25 Aligned_cols=212 Identities=22% Similarity=0.280 Sum_probs=171.6
Q ss_pred CceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCcc
Q 006275 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (652)
Q Consensus 96 ~~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~ 172 (652)
++++++|+++.|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|... ++.+.+.+
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---~i~~~~~l 96 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---LIAISSGL 96 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---eEEecccc
Confidence 46999999999976 4699999999999999999999999999999999999999999999987543 33334455
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccc
Q 006275 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (652)
Q Consensus 173 ~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (652)
.+..|++||+..... +. ........+.+.++++.+|+. +.
T Consensus 97 ~~~lTV~EnL~l~~~---------------~~------------------------~~~~~e~~e~i~elLe~lgL~-~~ 136 (549)
T PRK13545 97 NGQLTGIENIELKGL---------------MM------------------------GLTKEKIKEIIPEIIEFADIG-KF 136 (549)
T ss_pred CCCCcHHHHHHhhhh---------------hc------------------------CCCHHHHHHHHHHHHHHcCCh-hH
Confidence 566799999752100 00 000112233455677888885 56
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEE
Q 006275 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET 329 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l 329 (652)
.++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||++++|
T Consensus 137 ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL 216 (549)
T PRK13545 137 IYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWL 216 (549)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 788899999999999999999999999999999999999999999988774 45899999999999999999999999
Q ss_pred cCCeEEEecCChHHHHHHHHHH
Q 006275 330 EMGVSRTYEGNYSQYVLEKAAW 351 (652)
Q Consensus 330 ~~G~~~~~~g~~~~~~~~~~~~ 351 (652)
++|++. +.|+.+++......|
T Consensus 217 ~~GkIv-~~G~~~el~~~~~~~ 237 (549)
T PRK13545 217 HYGQVK-EYGDIKEVVDHYDEF 237 (549)
T ss_pred ECCEEE-EECCHHHHHhhHHHH
Confidence 999984 667777665543333
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=319.31 Aligned_cols=201 Identities=23% Similarity=0.444 Sum_probs=163.2
Q ss_pred EEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------ccee
Q 006275 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (652)
Q Consensus 425 i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (652)
|+++|++++|++ +.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|.
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 789999999975 57999999999999999999999999999999999999999999999997652 2344
Q ss_pred cccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCC----------hhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 494 EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK----------ADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~----------~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
+|+. .++ ..|+.+|+..........++.+.++.+++. ....++.+.+|||||||||+|||||+.+|+
T Consensus 83 ~q~~--~~~-~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 83 LQDT--FLF-SGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred cCCc--hhh-hhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 4442 333 359999987653322223333444433331 123456679999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|||||||++||+.+++.+.+.|.++. .|||+|||+++++.. ||++++|++|++. ..|+++++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~-~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKII-EEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEE-EeCCHHHHHh
Confidence 999999999999999999999998763 599999999999965 9999999999997 4577766543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=318.76 Aligned_cols=200 Identities=27% Similarity=0.406 Sum_probs=156.9
Q ss_pred eEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 98 i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 899999999974 469999999999999999999999999999999999999999999998742 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.++ ..|++||+.. +.. ... +.+...++. . .+...+..+ .
T Consensus 83 ~~q~~~l~-~~tv~enl~~-~~~-~~~----~~~~~~~~~------------------------~---~l~~~~~~l--~ 126 (221)
T cd03244 83 IPQDPVLF-SGTIRSNLDP-FGE-YSD----EELWQALER------------------------V---GLKEFVESL--P 126 (221)
T ss_pred ECCCCccc-cchHHHHhCc-CCC-CCH----HHHHHHHHH------------------------h---CcHHHHHhc--c
Confidence 99998864 4699999741 100 000 000000000 0 011111111 1
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~ 323 (652)
.|+.+ ..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++||+++++.. |
T Consensus 127 ~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~ 204 (221)
T cd03244 127 GGLDT-VVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-S 204 (221)
T ss_pred ccccc-ccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-C
Confidence 23432 34567899999999999999999999999999999999999999999998854 46899999999999975 9
Q ss_pred CeEEEEcCCeEE
Q 006275 324 TKIVETEMGVSR 335 (652)
Q Consensus 324 d~ii~l~~G~~~ 335 (652)
|++++|++|++.
T Consensus 205 d~i~~l~~g~~~ 216 (221)
T cd03244 205 DRILVLDKGRVV 216 (221)
T ss_pred CEEEEEECCeEE
Confidence 999999999874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=321.53 Aligned_cols=207 Identities=25% Similarity=0.385 Sum_probs=161.2
Q ss_pred eEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEE
Q 006275 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (652)
Q Consensus 98 i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v 166 (652)
|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 47899999996 4679999999999999999999999999999999999999999999998743 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.++ ..|+.+|+....... .. ..+...+.. ..+.+.+..+
T Consensus 81 ~q~~~~~-~~tv~~nl~~~~~~~-~~----~~~~~~~~~-------------------------------~~l~~~~~~l 123 (236)
T cd03253 81 PQDTVLF-NDTIGYNIRYGRPDA-TD----EEVIEAAKA-------------------------------AQIHDKIMRF 123 (236)
T ss_pred CCCChhh-cchHHHHHhhcCCCC-CH----HHHHHHHHH-------------------------------cCcHHHHHhc
Confidence 9998875 579999985321100 00 000000000 0011222222
Q ss_pred --CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006275 247 --GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 247 --gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (652)
|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||++||+.+++..
T Consensus 124 ~~~~~-~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~- 201 (236)
T cd03253 124 PDGYD-TIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN- 201 (236)
T ss_pred ccccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-
Confidence 333 234666899999999999999999999999999999999999999999887743 28899999999999965
Q ss_pred cCeEEEEcCCeEEEecCChHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||++++|++|++. ..|+.+++
T Consensus 202 ~d~~~~l~~g~i~-~~~~~~~~ 222 (236)
T cd03253 202 ADKIIVLKDGRIV-ERGTHEEL 222 (236)
T ss_pred CCEEEEEECCEEE-eeCCHHHH
Confidence 9999999999984 56765554
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=316.34 Aligned_cols=190 Identities=30% Similarity=0.425 Sum_probs=163.8
Q ss_pred EEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------
Q 006275 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (652)
Q Consensus 425 i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------- 489 (652)
++++|+++.|++ +.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 789999999974 67999999999999999999999999999999999999999999999998652
Q ss_pred --cceecccccccCCCCCCHHHHHHHhhhhc-------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 490 --PNYFEQNQAEALDLDKTVLETVAEAAEDW-------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 490 --~~~~~~~~~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
.+|++|+ ..+++..|+.+|+....... ....+.++++++++. +..++++.+||+|||||++|||||+.
T Consensus 82 ~~i~~~~q~--~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~ 158 (220)
T TIGR02982 82 RNIGYIFQA--HNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVH 158 (220)
T ss_pred hheEEEcCC--hhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 1344443 34556689999998643211 123577899999994 67789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEE
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i 618 (652)
+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.. ++||+|++|++|++
T Consensus 159 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 159 RPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 99999999999999999999999988754 46999999999864 78999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=322.36 Aligned_cols=203 Identities=24% Similarity=0.314 Sum_probs=170.5
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEECceecc---------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~~~--------- 489 (652)
+|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 69999999999888899999999999999999999999999999999999985 4899999997652
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhh------cc-HHHHHHHHhhCCCC---hhhhccCcCCCCHHHHHHHHHHH
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED------WR-IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~-~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.+|+.|+ ..+++ .|+.+|+...... .. ...+.++++.+++. ....++++.+|||||||||+|||
T Consensus 87 ~~~i~~v~q~--~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 163 (259)
T PRK14260 87 RRQIGMVFQR--PNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIAR 163 (259)
T ss_pred hhheEEEecc--cccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 1234443 23444 8999999764321 11 23456778888873 23568899999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEe-----CCEEEeecCChhhHh
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVK-----GSNLQDYAGDYNVCF 629 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~-----~g~i~~~~g~~~~~~ 629 (652)
||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|+ +|+++. .|+.+++.
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~~~ 242 (259)
T PRK14260 164 ALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE-FGVTTQIF 242 (259)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE-eCCHHHHh
Confidence 999999999999999999999999999999875 3599999999999999999999997 499874 58888765
Q ss_pred h
Q 006275 630 T 630 (652)
Q Consensus 630 ~ 630 (652)
+
T Consensus 243 ~ 243 (259)
T PRK14260 243 S 243 (259)
T ss_pred c
Confidence 4
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=355.88 Aligned_cols=200 Identities=24% Similarity=0.301 Sum_probs=173.0
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEECceecc-----------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVL----------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~----------- 489 (652)
++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 579999999999988999999999999999999999999999999999999986 8999999997652
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhh-----cc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAED-----WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~-----~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
.+|++|+ ..+++.+|+.+|+.+.... .. ...+.++++.+++. ...++++.+|||||||||+|||||+.
T Consensus 84 i~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 84 IAIIHQE--LALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-INPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred eEEEEec--cccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhc
Confidence 2355554 3466778999999764311 11 23577899999994 56799999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~ 626 (652)
+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+.+
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~ 228 (506)
T PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG-TRPAA 228 (506)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee-ecccc
Confidence 99999999999999999999999999765 4699999999999999999999999999874 45444
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=308.77 Aligned_cols=173 Identities=35% Similarity=0.571 Sum_probs=148.2
Q ss_pred EEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCC
Q 006275 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDK 505 (652)
Q Consensus 426 ~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 505 (652)
+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . ..
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~--~--~~------- 69 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL--S--PK------- 69 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcC--C--HH-------
Confidence 478999999888899999999999999999999999999999999999999999999998765210 0 00
Q ss_pred CHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q 006275 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585 (652)
Q Consensus 506 tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 585 (652)
.....+.+ +..+++.+++. +..++.+.+||||||||++||||++.+|++|||||||++||+.+++.+.++
T Consensus 70 ~~~~~i~~---------~~q~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~ 139 (180)
T cd03214 70 ELARKIAY---------VPQALELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139 (180)
T ss_pred HHHHHHhH---------HHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 00111111 11178888885 567889999999999999999999999999999999999999999999999
Q ss_pred HHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 586 ISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 586 l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
|.++ +.|+|++||+++++.++||++++|++|++.
T Consensus 140 l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9765 459999999999999999999999999986
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=320.08 Aligned_cols=205 Identities=23% Similarity=0.328 Sum_probs=166.7
Q ss_pred eEEEeEEEEeCC--------------------eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 98 VKLENISKSYKG--------------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 98 i~v~~ls~~y~~--------------------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
|+++|+++.|.. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 84 (264)
T PRK13546 5 VNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN 84 (264)
T ss_pred EEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 777888777732 248999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 158 ~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
| .+++++|.+.+....|+.+|+...... .. ........
T Consensus 85 g---~~~~~~~~~~~~~~~tv~enl~~~~~~---------------~~------------------------~~~~~~~~ 122 (264)
T PRK13546 85 G---EVSVIAISAGLSGQLTGIENIEFKMLC---------------MG------------------------FKRKEIKA 122 (264)
T ss_pred C---EEeEEecccCCCCCCcHHHHHHHHHHH---------------cC------------------------CCHHHHHH
Confidence 6 367888888776778999997521100 00 00011122
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEec
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsH 314 (652)
.+..++..+++. +..++++.+|||||+|||+|||||+.+|++|||||||+|||+.+++.+.+.|. +.|+|||++||
T Consensus 123 ~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH 201 (264)
T PRK13546 123 MTPKIIEFSELG-EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH 201 (264)
T ss_pred HHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 334556666775 56788899999999999999999999999999999999999999998888764 45899999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
+++++..+||+|+++++|++. ..|+++++..
T Consensus 202 ~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~ 232 (264)
T PRK13546 202 NLGQVRQFCTKIAWIEGGKLK-DYGELDDVLP 232 (264)
T ss_pred CHHHHHHHcCEEEEEECCEEE-EeCCHHHHHH
Confidence 999999999999999999984 6687766543
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=319.29 Aligned_cols=194 Identities=21% Similarity=0.320 Sum_probs=159.0
Q ss_pred eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC----CCcEEEECCCC--------ceEEEEeccCc--cCCCCC
Q 006275 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKIAFLSQEFE--VSMSRT 177 (652)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p----~~G~i~~~~~~--------~~i~~v~Q~~~--~~~~~T 177 (652)
+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+ ..++|++|++. +.+..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 89999998743 36999999984 334578
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc--ccccC
Q 006275 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDR 255 (652)
Q Consensus 178 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~--~~~~~ 255 (652)
+.+|+...... .. ........++.++++.+|+.. ...++
T Consensus 81 ~~~~~~~~~~~--------------~~-------------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 121 (230)
T TIGR02770 81 MGNHAIETLRS--------------LG-------------------------KLSKQARALILEALEAVGLPDPEEVLKK 121 (230)
T ss_pred HHHHHHHHHHH--------------cC-------------------------ccHHHHHHHHHHHHHHcCCCchHHHHhC
Confidence 98887421100 00 000112345667888888862 45688
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006275 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEM 331 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ii~l~~ 331 (652)
++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++ .++|||++||+++++..+||+|++|++
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 201 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD 201 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999887743 478999999999999999999999999
Q ss_pred CeEEEecCChHHHH
Q 006275 332 GVSRTYEGNYSQYV 345 (652)
Q Consensus 332 G~~~~~~g~~~~~~ 345 (652)
|++. ..|..+++.
T Consensus 202 G~i~-~~~~~~~~~ 214 (230)
T TIGR02770 202 GRIV-ERGTVKEIF 214 (230)
T ss_pred CEEE-EeCCHHHHH
Confidence 9984 567665553
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=306.00 Aligned_cols=157 Identities=30% Similarity=0.542 Sum_probs=139.8
Q ss_pred eEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 98 i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
|+++|++++|++ .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 478999999975 469999999999999999999999999999999999999999999998742 35899
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++ .|++||
T Consensus 81 ~~q~~~~~~-~tv~~~---------------------------------------------------------------- 95 (173)
T cd03246 81 LPQDDELFS-GSIAEN---------------------------------------------------------------- 95 (173)
T ss_pred ECCCCcccc-CcHHHH----------------------------------------------------------------
Confidence 999986644 365543
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (652)
+ ||||||||++|||||+.+|++|||||||++||+.++.++.++|+ +.|+|||++||+++++ ..
T Consensus 96 -----------l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~ 161 (173)
T cd03246 96 -----------I--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-AS 161 (173)
T ss_pred -----------C--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-Hh
Confidence 0 89999999999999999999999999999999999999988874 3588999999999998 57
Q ss_pred cCeEEEEcCCe
Q 006275 323 CTKIVETEMGV 333 (652)
Q Consensus 323 ~d~ii~l~~G~ 333 (652)
||+++++++|+
T Consensus 162 ~d~v~~l~~G~ 172 (173)
T cd03246 162 ADRILVLEDGR 172 (173)
T ss_pred CCEEEEEECCC
Confidence 99999999885
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=312.80 Aligned_cols=184 Identities=25% Similarity=0.386 Sum_probs=154.3
Q ss_pred CceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
+.|+++|++++|++ .++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 35999999999975 469999999999999999999999999999999999999999999998742 359
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|++.++. .|+++|+... .. .. ...+.+.+
T Consensus 85 ~~v~q~~~~~~-~tv~~~l~~~-~~-----------------------------------------~~----~~~~~~~l 117 (207)
T cd03369 85 TIIPQDPTLFS-GTIRSNLDPF-DE-----------------------------------------YS----DEEIYGAL 117 (207)
T ss_pred EEEecCCcccC-ccHHHHhccc-CC-----------------------------------------CC----HHHHHHHh
Confidence 99999987754 6999997411 00 00 00011111
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (652)
+ .++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|+|++||+.+++..
T Consensus 118 ~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 118 R--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred h--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 1 2456899999999999999999999999999999999999999999988864 37899999999999976
Q ss_pred hcCeEEEEcCCeEE
Q 006275 322 LCTKIVETEMGVSR 335 (652)
Q Consensus 322 ~~d~ii~l~~G~~~ 335 (652)
||++++|++|++.
T Consensus 190 -~d~v~~l~~g~i~ 202 (207)
T cd03369 190 -YDKILVMDAGEVK 202 (207)
T ss_pred -CCEEEEEECCEEE
Confidence 9999999999874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=328.33 Aligned_cols=213 Identities=24% Similarity=0.386 Sum_probs=176.0
Q ss_pred cCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEECceec
Q 006275 414 FPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNV 488 (652)
Q Consensus 414 ~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~ 488 (652)
|..+..+.+.+|+++||+++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++
T Consensus 35 ~~~~~~~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i 114 (305)
T PRK14264 35 WTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114 (305)
T ss_pred ccccccCCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 44444556778999999999998899999999999999999999999999999999999986 6899999999765
Q ss_pred c------------cceecccccccCCCCCCHHHHHHHhhhh-------------------ccHHHHHHHHhhCCCC---h
Q 006275 489 L------------PNYFEQNQAEALDLDKTVLETVAEAAED-------------------WRIDDIKGLLGRCNFK---A 534 (652)
Q Consensus 489 ~------------~~~~~~~~~~~~~~~~tv~e~~~~~~~~-------------------~~~~~~~~~L~~~~l~---~ 534 (652)
. .+|++|+. .+++ .|+.+|+...... .....+.++++.+++. .
T Consensus 115 ~~~~~~~~~~~~~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 191 (305)
T PRK14264 115 YQDGVNLVELRKRVGMVFQSP--NPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN 191 (305)
T ss_pred ccccccHHHHhhceEEEccCC--cccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh
Confidence 2 12444442 3333 5999999864210 0123467788888874 2
Q ss_pred hhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEE-E
Q 006275 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRV-V 611 (652)
Q Consensus 535 ~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drv-i 611 (652)
...++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||++ +
T Consensus 192 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~ 271 (305)
T PRK14264 192 DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAV 271 (305)
T ss_pred HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEE
Confidence 3467889999999999999999999999999999999999999999999999876 359999999999999999997 5
Q ss_pred EEeCCEEEeecCChhhHhh
Q 006275 612 EVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 612 ~l~~g~i~~~~g~~~~~~~ 630 (652)
+|++|++.. .|+++++.+
T Consensus 272 ~l~~G~i~~-~g~~~~~~~ 289 (305)
T PRK14264 272 FLTGGELVE-YDDTDKIFE 289 (305)
T ss_pred EecCCEEEE-eCCHHHHHh
Confidence 679999974 577776644
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=308.59 Aligned_cols=161 Identities=26% Similarity=0.430 Sum_probs=144.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~ 165 (652)
+|+++|++++| +|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence 59999999999 8999999999999999999999999999999999999999999998732 25999
Q ss_pred EeccC---ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 166 LSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 166 v~Q~~---~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
++|++ .+++..|++||+...
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~--------------------------------------------------------- 102 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALS--------------------------------------------------------- 102 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHH---------------------------------------------------------
Confidence 99985 455678999886310
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l 319 (652)
. .||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .+.|+|++||+++++
T Consensus 103 --------~-------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 167 (182)
T cd03215 103 --------S-------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL 167 (182)
T ss_pred --------h-------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 0 0999999999999999999999999999999999999999887753 478999999999999
Q ss_pred HhhcCeEEEEcCCe
Q 006275 320 DQLCTKIVETEMGV 333 (652)
Q Consensus 320 ~~~~d~ii~l~~G~ 333 (652)
..+||+++++++|+
T Consensus 168 ~~~~d~v~~l~~G~ 181 (182)
T cd03215 168 LGLCDRILVMYEGR 181 (182)
T ss_pred HHhCCEEEEecCCc
Confidence 99999999999886
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=367.93 Aligned_cols=203 Identities=26% Similarity=0.485 Sum_probs=175.2
Q ss_pred cEEEEEeeeeEeC--CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------c
Q 006275 423 SVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (652)
Q Consensus 423 ~~i~~~~v~~~y~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (652)
..|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. .
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 4599999999995 357999999999999999999999999999999999999999999999998863 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhh------c----cCcCCCCHHHHHHHHHHHHHcc
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML------D----RKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~----~~~~~LSgGqrqrv~LAral~~ 560 (652)
++++|+. ..++.|++||+..+.. ...+++.++++.+++..... + ....+||||||||++||||+++
T Consensus 530 ~~v~Q~~---~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~ 605 (686)
T TIGR03797 530 GVVLQNG---RLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR 605 (686)
T ss_pred EEEccCC---ccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 4555543 3467899999998755 56777888888888743211 1 2335799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+|+|||||||||+||+.+++.+.+.|++.+.|+|+|||+++.+.. ||+|++|++|++++ .|++++.++.
T Consensus 606 ~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~-~G~~~~Ll~~ 674 (686)
T TIGR03797 606 KPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQ-QGTYDELMAR 674 (686)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 999999999999999999999999999888899999999999976 99999999999984 6888876654
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=341.76 Aligned_cols=202 Identities=26% Similarity=0.410 Sum_probs=175.5
Q ss_pred EEEEEeeeeEeCCe--eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---c-------c
Q 006275 424 VVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---P-------N 491 (652)
Q Consensus 424 ~i~~~~v~~~y~~~--~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---~-------~ 491 (652)
.++++||+|+|++. ++|+|+||++++||++||+|++|||||||+.+|+|.++|++|+|.++|.++. + .
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 79999999999865 5999999999999999999999999999999999999999999999997652 1 1
Q ss_pred eecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhh----------hccCcCCCCHHHHHHHHHHHHHccC
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEKARLAFCKFMVKP 561 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqrqrv~LAral~~~ 561 (652)
...|.. -.+..|+++|+..+..+.++++++++++++|+..-. .+.....||||||||++|||+|+++
T Consensus 416 vl~Qr~---hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 416 VLTQRV---HLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred hhccch---HHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 123322 246789999999998888889999999999985321 2223458999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
.+++||||||.|||+.+.+.+.+.|.+. ++|+|+|||++..++. ||||++|++|++++ .|++.+.+.
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIivl~~Gkiie-~G~~~~Ll~ 561 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKIIE-EGTHAELLA 561 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEEEECCeeee-cCCHHhhhc
Confidence 9999999999999999999999999764 5699999999999976 99999999999985 698888765
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=310.07 Aligned_cols=170 Identities=29% Similarity=0.387 Sum_probs=151.2
Q ss_pred ceEEEeEEEEeCC------eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCC--CCCCcEEEECCCC-------c
Q 006275 97 GVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-------M 161 (652)
Q Consensus 97 ~i~v~~ls~~y~~------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p~~G~i~~~~~~-------~ 161 (652)
.|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.+ .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 3899999999975 67999999999999999999999999999999999999 9999999998753 3
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
.++|++|++.+++..|++||+.... .
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~------------------------------------------------------~ 108 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAA------------------------------------------------------K 108 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHH------------------------------------------------------H
Confidence 5999999998877889999874100 0
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA- 317 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~- 317 (652)
..+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .++|+|++||+++
T Consensus 109 ---------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 173 (194)
T cd03213 109 ---------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSS 173 (194)
T ss_pred ---------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchH
Confidence 017999999999999999999999999999999999999999887743 4889999999996
Q ss_pred HHHhhcCeEEEEcCCeEE
Q 006275 318 FLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~ 335 (652)
.+.++||+++++++|++.
T Consensus 174 ~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 174 EIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHHhcCEEEEEeCCEEE
Confidence 788899999999999874
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=317.73 Aligned_cols=206 Identities=25% Similarity=0.329 Sum_probs=165.6
Q ss_pred eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC----CeeEEEECceecc--------cceecccccccCCCCCC
Q 006275 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP----RGGEVLLGEHNVL--------PNYFEQNQAEALDLDKT 506 (652)
Q Consensus 439 vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p----~~G~i~~~g~~~~--------~~~~~~~~~~~~~~~~t 506 (652)
+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++. .+|+.|+....+.+..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 8999999997652 23445443222445679
Q ss_pred HHHHHHHhhhh------ccHHHHHHHHhhCCCCh--hhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH
Q 006275 507 VLETVAEAAED------WRIDDIKGLLGRCNFKA--DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578 (652)
Q Consensus 507 v~e~~~~~~~~------~~~~~~~~~L~~~~l~~--~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~ 578 (652)
+.+++...... ...+++.++++.+++.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 98887643211 11234788999999952 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcCCcccccchhHHHhhh
Q 006275 579 KEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFSPFLLVPLRSYFFKHL 648 (652)
Q Consensus 579 ~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (652)
+..+.+.|.++ +.|||++|||++++..+||++++|++|++. ..|..+++..... ....+.|+--||
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~~~~---~~~~~~~~~~~~ 230 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV-ERGTVKEIFYNPK---HETTRKLLSAHL 230 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHhCcC---CHHHHHHHHhcC
Confidence 99999988754 459999999999999999999999999997 4577777654321 223444554453
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=320.25 Aligned_cols=204 Identities=25% Similarity=0.348 Sum_probs=169.9
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC--C---CeeEEEECceeccc-------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--P---RGGEVLLGEHNVLP------- 490 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~--p---~~G~i~~~g~~~~~------- 490 (652)
++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++..
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 47999999999998899999999999999999999999999999999999975 3 48999999977521
Q ss_pred -----ceecccccccCCCCCCHHHHHHHhhhh-----c-c-HHHHHHHHhhCCCCh---hhhccCcCCCCHHHHHHHHHH
Q 006275 491 -----NYFEQNQAEALDLDKTVLETVAEAAED-----W-R-IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 491 -----~~~~~~~~~~~~~~~tv~e~~~~~~~~-----~-~-~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqrqrv~LA 555 (652)
+|.+|. ..+++ .|+.+|+.+.... . . ...+.++++.+++.. ...++++.+||||||||++||
T Consensus 85 ~~~~i~~~~q~--~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14261 85 LRRKIGMVFQR--PNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA 161 (253)
T ss_pred hhceEEEEecC--CccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHH
Confidence 233443 33444 5999999864321 1 1 224567778777632 346789999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||+.+|++|||||||+|||+.++..+.++|+++ +.|||++|||++++..+||++++|++|++. ..|+.++..+
T Consensus 162 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 237 (253)
T PRK14261 162 RTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI-EFDKTTQIFE 237 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE-EcCCHHHHHh
Confidence 9999999999999999999999999999999876 369999999999999999999999999997 4577776543
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=326.08 Aligned_cols=199 Identities=19% Similarity=0.340 Sum_probs=169.8
Q ss_pred EEEEeeeeEeC--CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cce
Q 006275 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (652)
Q Consensus 425 i~~~~v~~~y~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (652)
|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|.++|.++. .++
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 89999999994 4679999999999999999999999999999999999998 7899999998752 234
Q ss_pred ecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCC-----------CCHHHHHHHHHHHHHccC
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-----------LSGGEKARLAFCKFMVKP 561 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSgGqrqrv~LAral~~~ 561 (652)
++|+ +.++ ..|+.+|+.... .+..+++++.++.+|+. ...++.+.. ||||||||++|||||+.+
T Consensus 82 v~q~--~~lf-~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 82 IPQK--VFIF-SGTFRKNLDPYG-KWSDEEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred ECCC--cccc-hhhHHHHhhhcc-CCCHHHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 5544 3344 469999996432 23456788889999984 566777765 999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|+||||||||++||+.++..+++.|++. +.|||+||||++++.. ||||++|++|++.+ .|++++.+..
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~-~g~~~~l~~~ 226 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQ-YDSIQKLLNE 226 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEee-cCCHHHHhhC
Confidence 9999999999999999999999999864 4599999999999976 99999999999985 5888876653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=360.06 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=168.3
Q ss_pred CceEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEE
Q 006275 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~ 164 (652)
..|+++|++|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 35999999999975 569999999999999999999999999999999999999999999999853 3599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|+|.+ ++.|+++|+...- + ... +++.++++.+ .+.+.+.++
T Consensus 419 ~v~Q~~~l-F~~Ti~~NI~~~~-~-~~d----~~i~~a~~~~---------------------------gl~~~i~~l-- 462 (592)
T PRK10790 419 MVQQDPVV-LADTFLANVTLGR-D-ISE----EQVWQALETV---------------------------QLAELARSL-- 462 (592)
T ss_pred EEccCCcc-ccchHHHHHHhCC-C-CCH----HHHHHHHHHc---------------------------CcHHHHHhc--
Confidence 99999987 5679999996421 1 000 1111111111 111122221
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (652)
.-|+.+...+ ...+||||||||++|||||+.+|+||||||||++||+++.+.+.+.|++ .++|+|+|||+++.+. .
T Consensus 463 p~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~ 540 (592)
T PRK10790 463 PDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-E 540 (592)
T ss_pred cccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-h
Confidence 1144433332 4678999999999999999999999999999999999999999888754 4799999999999885 5
Q ss_pred cCeEEEEcCCeEEEecCChHHHHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
||+|++|++|++. ..|++++++..
T Consensus 541 ~D~ii~l~~G~i~-~~G~~~~L~~~ 564 (592)
T PRK10790 541 ADTILVLHRGQAV-EQGTHQQLLAA 564 (592)
T ss_pred CCEEEEEECCEEE-EEcCHHHHHhC
Confidence 9999999999984 77998887643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 652 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-21 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 4e-21 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-07 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-20 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 5e-20 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 9e-08 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-20 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 5e-20 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 7e-15 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-14 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-14 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-14 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-14 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-14 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-14 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-14 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 4e-14 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 4e-14 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 4e-14 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-14 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-14 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 5e-14 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-14 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 7e-14 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 9e-14 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-13 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-13 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-13 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-13 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-12 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-12 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-12 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-12 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-12 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-12 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 6e-12 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 7e-12 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 9e-12 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-11 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-11 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 7e-11 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-11 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-10 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-10 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-10 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 6e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-10 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-09 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-09 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 1e-09 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-09 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-09 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-09 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-09 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 4e-09 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-09 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 5e-09 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 6e-09 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 7e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-09 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 9e-09 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 9e-09 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-09 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-08 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-08 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-08 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-08 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-08 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-08 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-08 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-08 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 7e-08 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 9e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-07 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-07 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-07 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 4e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 6e-07 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-06 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-05 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-05 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 652 | |||
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-86 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-85 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-48 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-48 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-36 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-69 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-28 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-60 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-57 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-27 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 5e-34 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-28 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 8e-33 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-25 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-30 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-28 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-20 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-28 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-23 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 8e-28 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-20 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-27 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-26 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-16 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-18 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 7e-16 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-08 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-17 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-13 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-17 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-14 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 7e-17 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-08 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-16 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-12 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-14 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-16 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-09 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-15 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-12 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-15 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 4e-12 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-15 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 9e-15 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-15 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-07 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-15 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-12 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 3e-15 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-15 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 4e-15 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 5e-09 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 5e-15 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 6e-09 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 6e-15 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-08 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 7e-15 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 7e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-14 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-14 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 6e-12 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 1e-14 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 4e-13 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-14 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 7e-12 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-14 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-08 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 8e-14 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-08 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-13 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-13 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 6e-13 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-13 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 3e-07 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 3e-13 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-13 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-07 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 5e-13 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 5e-12 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-12 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 6e-12 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 3e-04 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-11 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 7e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-11 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 5e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 7e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 7e-09 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-07 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 1e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-08 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-08 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 2e-06 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 7e-06 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 1e-05 |
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 282 bits (723), Expect = 1e-86
Identities = 116/534 (21%), Positives = 210/534 (39%), Gaps = 100/534 (18%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E+ Y + VK G VG+VG NG GKTT ++I+AGQ P+ + N
Sbjct: 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEM------EIAGKLERVQKALESAVDDMDLMG 214
+ AF E + R E K + + GK+ + K +D +G
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK-------VDEVG 207
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGKI 273
+ + L+ + + LD ++ +L SG ++ R+++
Sbjct: 208 KFEEVVKELELE------NVLDRELHQL-------------------SGGELQRVAIAAA 242
Query: 274 LLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330
LL+ DEP+++LD+ + + L + ++++ HD A LD L I
Sbjct: 243 LLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIH--- 299
Query: 331 MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390
V G Y + K T++ IN G
Sbjct: 300 --VVYGEPGVYGIFSKPKG-------------------TRNGINEFLQG----------- 327
Query: 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERG 450
L++E +P++ + K+ ++V L Y L I +G
Sbjct: 328 ---YLKDENVRFRPYEIRFTKLS-ERVDVERETLVEYPRLVKDYGSFKL-EVEPGEIRKG 382
Query: 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLET 510
E I+GPNG GK+T +K++ G+E+P G+V + Q + + TV E
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY-----KPQYIKAEYEGTVYEL 437
Query: 511 VAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
+++ + ++ LG D+ DR V LSGGE R+A +++ + +
Sbjct: 438 LSKIDSSKLNSNFYKTELLKPLGI----IDLYDRNVEDLSGGELQRVAIAATLLRDADIY 493
Query: 566 VLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
+LDEP+ +LD+ + + + + + T + V HD + + +R++ +G
Sbjct: 494 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 286 bits (732), Expect = 5e-85
Identities = 100/518 (19%), Positives = 181/518 (34%), Gaps = 98/518 (18%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ S +Y +L +K+ + G+ G NG GK+T +R IA +
Sbjct: 433 GEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDG---- 488
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ + ++ + + + + L+ V ++
Sbjct: 489 FPTQEECRTVYVEHDID-------------GTHSDTSV---LDFVFESGVGT-------- 524
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
+ + E GFT + +++ S GW+M+++L + +
Sbjct: 525 ---------------------KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV 563
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334
L++ D+LLLDEPTNHLD + WL YL + + ISHD FLD +C I+ E
Sbjct: 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623
Query: 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER 394
R Y+GN++++V + + E +L
Sbjct: 624 RKYKGNFTEFVKKCP------------AAKAYE-----------------------ELSN 648
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEK 452
E + +P + +K + +++V + N+EF Y + N +
Sbjct: 649 TDLEFKFPEPGYLEGVKTK-------QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSR 701
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD--LDKTVLET 510
A+IGPNG GKSTL+ ++ G P GEV N Y +Q+ ++ LDKT E
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTH-ENCRIAYIKQHAFAHIESHLDKTPSEY 760
Query: 511 VAEAAEDWR-IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
+ + + + + N K+ + G + +T
Sbjct: 761 IQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECS 820
Query: 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHD-RYFVKQI 606
+I K + I K +
Sbjct: 821 FLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMV 858
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 181 bits (459), Expect = 5e-48
Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 7/242 (2%)
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRA 443
+K + +E ++ + F + G + Y ++L N+
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDL-CNCEFSLAYGAKILLNKT 454
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
L ++R + I GPNGCGKSTL++ I + G E + Y E +
Sbjct: 455 QLRLKRARRYGICGPNGCGKSTLMRAIANGQV--DGFPTQEECRTV--YVEH-DIDGTHS 509
Query: 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563
D +VL+ V E+ + + IK L F +M+ +S LSGG K +LA + +++ +
Sbjct: 510 DTSVLDFVFESGVGTK-EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNAD 568
Query: 564 LLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAG 623
+L+LDEPTNHLD + L ++ T IT+SHD F+ + ++ +G L+ Y G
Sbjct: 569 ILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKG 628
Query: 624 DY 625
++
Sbjct: 629 NF 630
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 6e-48
Identities = 67/359 (18%), Positives = 130/359 (36%), Gaps = 76/359 (21%)
Query: 54 VEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT-- 111
V+K AKA S + E K + + VK+ N+ Y G +
Sbjct: 634 VKKCPAAKAY------EELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKP 687
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE-- 169
+ D+ ++ ++ ++G NGAGK+T + ++ G+ P SG V N +IA++ Q
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH-ENCRIAYIKQHAF 746
Query: 170 --FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL----------- 216
E + +T E F+ + ++ E+ + M+ + ++
Sbjct: 747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIH 806
Query: 217 --------------------------------------LDEFDLLQRKAQAVN-LDTLDA 237
+ +L++ ++ V +D +A
Sbjct: 807 SRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEA 866
Query: 238 KVSKLMPE------------LGFTADDG-DRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
S LG + + S G ++++ L Q P L++LD
Sbjct: 867 LASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLD 926
Query: 285 EPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343
EPTN+LD D++ L L + + ++II+H F L ++ + G N+
Sbjct: 927 EPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWVS 985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 2e-36
Identities = 41/236 (17%), Positives = 83/236 (35%), Gaps = 12/236 (5%)
Query: 392 LERLQEEEQIEKPFQ-RKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERG 450
E +Q Q + + + + E + + + R
Sbjct: 758 SEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817
Query: 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLET 510
E + ++G N KS +M ++ + ++ ++ +
Sbjct: 818 ECSFLLGENIGMKSERWVPMMSVDNAW----------IPRGELVESHSKMVAEVDMKEAL 867
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKAD-MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
+ +I+ + + ++ LSGG+K +L + L+VLDE
Sbjct: 868 ASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE 927
Query: 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
PTN+LD S L +A+ E++G VI ++H F K + V VK + ++
Sbjct: 928 PTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNW 983
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 234 bits (599), Expect = 2e-69
Identities = 101/528 (19%), Positives = 196/528 (37%), Gaps = 82/528 (15%)
Query: 101 ENISKSYKGVTVLKDVTWEV-KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ Y V K K +G++G NG GKTT L+I+AG+ P+ G+
Sbjct: 3 GEVIHRY-KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG 61
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
++ + E+ +E S + + +E K L+ V +L +
Sbjct: 62 KDEVLKRFRGKEIYN---YFKELYSNELKIVHKIQYVEYASKFLKGTV------NEILTK 112
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
D +K + L + L ++ S G R+ + LL++ D
Sbjct: 113 IDERGKKDEVKELLNMT----NLW----------NKDANILSGGGLQRLLVAASLLREAD 158
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
+ + D+P+++LD+ + + ++ ++++ HD LD L I S
Sbjct: 159 VYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESS--V 216
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQE 397
G S+ + + + K + R + L+ + +
Sbjct: 217 YGRVSKSYAARVG--INNF------------LKGYLPAENMKI---RPDEIKFMLKEVSD 259
Query: 398 EEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
+ + + + + D L N + GE I+G
Sbjct: 260 LDLSKDLKTKMK-----------------WTKIIKKLGDFQLVVD-NGEAKEGEIIGILG 301
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
PNG GK+T ++++G G V + + +Y Q + D TV + + A++D
Sbjct: 302 PNGIGKTTFARILVGEITADEGSVTPEKQIL--SYKPQR--IFPNYDGTVQQYLENASKD 357
Query: 518 ------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
W +++ L +L+ V+ LSGGE +L + K + L VLD+P+
Sbjct: 358 ALSTSSWFFEEVTKRLNL----HRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413
Query: 572 NHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
++LD+ + + ++ E K + HD I +R++ KG
Sbjct: 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-28
Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 50/233 (21%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
K I K L E K+GE +G++G NG GKTT RI+ G+ D G+V K
Sbjct: 271 KWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK 329
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ Q + TV++ +A K+ + +
Sbjct: 330 --QILSYKPQRIFPNYDGTVQQYLENASKDALS----------------TSSWFFEEVTK 371
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+L +L+ + V S G ++ + L ++
Sbjct: 372 RLNL-----------------HRLL----------ESNVNDLSGGELQKLYIAATLAKEA 404
Query: 279 DLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
DL +LD+P+++LD++ + ++ ++ II HD + D + +I+
Sbjct: 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRII 457
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 7e-60
Identities = 107/545 (19%), Positives = 203/545 (37%), Gaps = 99/545 (18%)
Query: 90 GASSISSGVKLE-NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
G S +LE + Y + VK+G VG+VG NG GK+T ++I+AGQ
Sbjct: 13 GLVPRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72
Query: 149 PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA-FKEEM-----EIAGKLERVQKA 202
P+ + + AF E + + ++ + K + + +
Sbjct: 73 PNLCGDNDSWDGVIRAFRGNELQ-NYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI--EL 129
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
L+ D+ + ++ +L +R + S
Sbjct: 130 LK-KADETGKLEEVVKALELENVL---------------------------EREIQHLSG 161
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE---WLEGYLGKQDVPMVIISHDRAFL 319
G R+++ LL++ DEP+++LD+ L ++ ++++ HD A L
Sbjct: 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL 221
Query: 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG 379
D L I G Y + K T++ IN
Sbjct: 222 DYLSDIIHVVYGE-----PGVYGIFSQPKG-------------------TRNGINEF--- 254
Query: 380 ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLL 439
L ++E + + ++VT L Y L
Sbjct: 255 ------------LRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRL 302
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE 499
I++GE I+GPNG GK+T +K++ G+E+P G++ + Q
Sbjct: 303 -EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY-----KPQYI 356
Query: 500 ALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554
D + TV E +++ + ++ LG D+ DR+V+ LSGGE R+A
Sbjct: 357 KADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI----IDLYDREVNELSGGELQRVAI 412
Query: 555 CKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
+++ + + +LDEP+ +LD+ + + + + + T + V HD + + +R+
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 472
Query: 611 VEVKG 615
+ +G
Sbjct: 473 MVFEG 477
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 202 bits (517), Expect = 3e-57
Identities = 96/540 (17%), Positives = 190/540 (35%), Gaps = 102/540 (18%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+++ Y + + G+ +GLVG NG GK+T L+I+AG+++P+ G
Sbjct: 81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEW 140
Query: 161 MKIA--FLSQEFEVSMSRTVREEFMSAFKEEM----------EIAGKLERVQKALESAVD 208
+I F E + ++ + ++ + K + + E ++ +E + +
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE 200
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
D+ R + L ++ R + S G R
Sbjct: 201 DVK---RYIKILQL-----------------ENVL----------KRDIEKLSGGELQRF 230
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTK 325
++G +Q+ D+ + DEP+++LD+ L ++ + HD + LD L
Sbjct: 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF 290
Query: 326 IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQ-TKDLINRLGAGANSGR 384
+ ++ + + I I R
Sbjct: 291 VC-----------------IIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRF---R 330
Query: 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
+ + ++ E+ Q + + +G +V
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVE------------------E 372
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
E ++G NG GK+TL+KL+ G KP G+ + N + Q A
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL-----NVSMKPQKIAPKFP 427
Query: 505 KTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559
TV + + D+ L D++D++V LSGGE R+A +
Sbjct: 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRI----DDIIDQEVQHLSGGELQRVAIVLALG 483
Query: 560 KPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
P+ + ++DEP+ +LD + +++ I K T V HD + ++V+ +G
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-27
Identities = 46/223 (20%), Positives = 78/223 (34%), Gaps = 32/223 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ Y T G+ ++G NG GKST LK++ G +KP G
Sbjct: 76 PTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD 135
Query: 483 LGEHNVL---------------------------PNYFEQNQAEALDLDKTVLETVAEAA 515
P Y + + V E +
Sbjct: 136 DPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM 195
Query: 516 EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
E +D+K + + ++L R + LSGGE R A V+ + + + DEP+++LD
Sbjct: 196 EK-SPEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Query: 576 IPSKEMLEEAISEYK---GTVITVSHDRYFVKQIVNRVVEVKG 615
+ + + I VI V HD + + + V + G
Sbjct: 254 VKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYG 296
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 5e-34
Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 28/215 (13%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-L 482
++ + + + + + + + I +G+K + G NG GK+TLL ++ E G V L
Sbjct: 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 483 LGE--HNVLPNYFE---------QNQAEALDLDKTVLETVAEAAED----WRI---DDI- 523
G+ V + + E + V++ V A ++ +
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN 140
Query: 524 --KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
LL + + + LS GEK R+ + ++ +L+LDEP LD ++E
Sbjct: 141 EAHQLLKLVGM-SAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARES 199
Query: 582 LEEAISEYKG-----TVITVSHDRYFVKQIVNRVV 611
L + +I V+H + ++++
Sbjct: 200 LLSILDSLSDSYPTLAMIYVTHFIEEITANFSKIL 234
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 55/249 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++L+ I + +G T+LK ++W++ KG+K L G+NGAGKTT L I+ E SG V
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 156 -----KAKSNM-----KIAFLSQEFEVSMSR--TVREEFMSAFKEEMEIAGKLERVQKAL 203
K + I F+S V + +S + G + +
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA---FKSIGVYQDIDDE- 137
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+ +LL + + + + S+G
Sbjct: 138 -----IRNEAHQLLKLVGMSAKA---------------------------QQYIGYLSTG 165
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDVPMVIISHDRAF 318
+ R+ + + L+ P +L+LDEP LD E L L + M+ ++H
Sbjct: 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE 225
Query: 319 LDQLCTKIV 327
+ +KI+
Sbjct: 226 ITANFSKIL 234
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 8e-33
Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 29/212 (13%)
Query: 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++NL F Y+ + LF + N + +G+ A++G NGCGKSTLL L++G+ +P G++
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 482 -LLGEHNVLPNYFEQNQAEALDLDKTVLETVA------------EAAEDWRI-DDIKGLL 527
+ +P Q + +VL+ V + D+++ L
Sbjct: 63 EVYQSIGFVP------QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL 116
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLE 583
+ R+ + LSGG++ + + + L++LDEPT+ LD+ ++ +L
Sbjct: 117 NLTHLA----KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLI 172
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
+ TV+ +H V I N+ + +
Sbjct: 173 DLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 48/228 (21%)
Query: 95 SSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + +EN+ Y+ + + + +++ KG+ + ++G NG GK+T L ++ G P G
Sbjct: 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ + I F+ Q F + +V D+ LM
Sbjct: 62 IEVYQ---SIGFVPQFFSSPFAYSVL-----------------------------DIVLM 89
Query: 214 GRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
GR ++ F + D + + L R S S G + + +
Sbjct: 90 GRSTHINTFAKPKSH------D--YQVAMQALDYLN-LTHLAKREFTSLSGGQRQLILIA 140
Query: 272 KILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+ + + L+LLDEPT+ LDL + L Q++ +V +H
Sbjct: 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 41/191 (21%), Positives = 64/191 (33%), Gaps = 37/191 (19%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------- 487
+ + + GE ++GPNG GKSTLL + G+ G +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATK 70
Query: 488 ------VLPNYFEQNQAEALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNFKADMLD 538
L Q + V + + + + G D L
Sbjct: 71 LALHRAYLS------QQQTPPFATPVWHYLTLHQHDKTRTEL--LNDVAGALAL-DDKLG 121
Query: 539 RKVSLLSGGEKARLAF-------CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590
R + LSGGE R+ LL+LDEP N LD+ + L++ +S
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 591 --GTVITVSHD 599
++ SHD
Sbjct: 182 QGLAIVMSSHD 192
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 54/230 (23%), Positives = 80/230 (34%), Gaps = 72/230 (31%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KAKSNM---- 161
T L ++ EV+ GE + LVG NGAGK+T L +AG G++ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATK 70
Query: 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL-- 216
A+LSQ+ + V + + +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWH-------------------------YL----TLHQHDK 101
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+LL A A+ LD R S G R+ L ++LQ
Sbjct: 102 TRT-ELLNDVAGALALDDK-----------------LGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 277 D-------PDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD 315
LLLLDEP N LD+ + L L +Q + +V+ SHD
Sbjct: 144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA-LSQQGLAIVMSSHD 192
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 17/212 (8%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ + + NL + GEK I+GPNG GK+TLL+ I GL P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58
Query: 480 EVLLGEHNV--LPNY----FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCN 531
+ + V + NY +A + + TV + V E D +L
Sbjct: 59 NIFINGMEVRKIRNYIRYSTNLPEAYEIGV--TVNDIVYLYEELKGLDRDLFLEMLKALK 116
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
++L RK+ LS G+ + + ++ LDEP ++D + ++ I EY
Sbjct: 117 LGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK 176
Query: 592 TVITVSHDRYFVKQIVNRVVEV-KGSNLQDYA 622
I V+H+ + G+ LQ
Sbjct: 177 EGILVTHELDMLNLYKEYKAYFLVGNRLQGPI 208
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-20
Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 59/242 (24%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+ + G L+++ EV GEKV ++G NG+GKTT LR I+G P SGN
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 154 VIKAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ ++ L + +E+ + TV + EE++ + + + L+
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGV--TVNDIV--YLYEELKGLDR-DLFLEMLK- 113
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+L +E R + S+G
Sbjct: 114 -------ALKLGEEI--------------------------------LRRKLYKLSAGQS 134
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
+ + L P+++ LDEP ++D + Y+ + ++++H+ L+
Sbjct: 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEY 194
Query: 326 IV 327
Sbjct: 195 KA 196
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 5e-28
Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 56/230 (24%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-- 152
S +++ ++S Y VL+ +T ++KG V G NG GKTT L+ I+ +P G
Sbjct: 8 GSKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 153 -----NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ K K KI FL +E V +S ++ ++ L V K ++ +
Sbjct: 67 IYNGVPITKVKG--KIFFLPEEIIV-------PRKISV-EDYLKAVASLYGV-KVNKNEI 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
D L+ ++L K + + S G R
Sbjct: 116 MD------ALESVEVLDLK----------------------------KKLGELSQGTIRR 141
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH 314
+ L LL + ++ +LD+P +D D+ + + K+ ++I S
Sbjct: 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 5e-23
Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 28/205 (13%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I++L GY+ +L R +TIE+G GPNG GK+TLLK I KP GE++
Sbjct: 9 SKLEIRDLSVGYDKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 483 LGEHNV---------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD----IKGLLGR 529
+ LP + + +V + + A + + I L
Sbjct: 68 YNGVPITKVKGKIFFLP------EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589
L +K+ LS G R+ ++ + + VLD+P +D SK + ++I E
Sbjct: 122 VEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179
Query: 590 ---KGTVITVSHDRYFVKQIVNRVV 611
KG VI S + +
Sbjct: 180 LKEKGIVIISSRE---ELSYCDVNE 201
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 8e-28
Identities = 50/249 (20%), Positives = 100/249 (40%), Gaps = 66/249 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
V ++++ K +LK +++E+++GE GL+G NGAGKTT LRII+ +P SG V
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA-LES 205
+ + I++L +E + E + + +E
Sbjct: 76 GKNVVEEPHEVRK--LISYLPEEAGAYRNMQGI--------EYLRFVAGFYASSSSEIEE 125
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
V+ + L ++ V+++S G
Sbjct: 126 MVER------ATEIAGLGEKI---------------------------KDRVSTYSKGMV 152
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
++ + + L+ +P L +LDEPT+ LD ++ ++ + +++ SH+
Sbjct: 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK----QASQEGLTILVSSHNMLE 208
Query: 319 LDQLCTKIV 327
++ LC +I
Sbjct: 209 VEFLCDRIA 217
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 19/206 (9%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V +K+L + + + IE GE +IGPNG GK+T L++I L KP G V
Sbjct: 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 483 LGEHNVLPNYFE--QN-----QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGR 529
+ NV+ E + + + +E + A + ++
Sbjct: 74 VFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI 133
Query: 530 CNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+ + +VS S G +L MV P L +LDEPT+ LD+ + + + + +
Sbjct: 134 AGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPR-LAILDEPTSGLDVLNAREVRKILKQ 191
Query: 589 YKG---TVITVSHDRYFVKQIVNRVV 611
T++ SH+ V+ + +R+
Sbjct: 192 ASQEGLTILVSSHNMLEVEFLCDRIA 217
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 45/221 (20%)
Query: 424 VVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ ++ L + Y D L N+ I+RGE TAI+G NG GKSTL + G+ KP G +
Sbjct: 7 ILKVEELNYNYSDGTHALKG-INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 482 LLGEHNVLPNYFEQNQAEALDLDK----------------TVLETVA-----------EA 514
L + + ++ + L + +V + V+ E
Sbjct: 66 LFDNKPI-----DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEI 120
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+ R+D+ G + D+ LS G+K R+A +V +L+LDEPT L
Sbjct: 121 RK--RVDNALKRTGI----EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 575 DIPSKEMLEEAI----SEYKGTVITVSHDRYFVKQIVNRVV 611
D + + + E T+I +HD V + V
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVF 215
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 51/261 (19%), Positives = 99/261 (37%), Gaps = 84/261 (32%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+K+E ++ +Y G LK + +K+GE ++G NG GK+T + G +P SG ++
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 156 ------KAKSNMK-------IAFL---SQEFEVSMSRTVREEFMSAF--------KEEME 191
++ + I F +Q F +V ++ +F ++E+
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS----ASVYQDV--SFGAVNMKLPEDEIR 121
Query: 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251
+RV AL+ G ++ D L
Sbjct: 122 -----KRVDNALK-------RTG--IEHL--------------KDKPTHCL--------- 144
Query: 252 DGDRLVASFSSGWQM-RMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQD 306
S Q R+++ +L+ +P +L+LDEPT LD + ++ L +
Sbjct: 145 ----------SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 307 VPMVIISHDRAFLDQLCTKIV 327
+ ++I +HD + C +
Sbjct: 195 ITIIIATHDIDIVPLYCDNVF 215
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 60/221 (27%), Positives = 88/221 (39%), Gaps = 48/221 (21%)
Query: 425 VTIKNLEFGYEDRLLFNRA-----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + N+ + + +L I GE + G G GKSTLL+++ GL +P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 480 EVLLGEHNVLPNYFE---------QN---Q-------------AEALDLDKTVLETVAEA 514
+VL +E Q Q + D+ + V +A
Sbjct: 63 DVLYDGERK--KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKA 120
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNH 573
E +D DR LSGGEK R+A +V +P +L+LDEP
Sbjct: 121 MEFVGLDF-----------DSFKDRVPFFLSGGEKRRVAIASVIVHEPD-ILILDEPLVG 168
Query: 574 LDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIVNRVV 611
LD K L + ++K TVI +SHD V V+RVV
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVV 209
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 3e-16
Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 83/260 (31%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+++ N+S + T L++V+ + +GE + + G G+GK+T L+I+AG EP SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 153 NVIKAKSNMKIAFLSQEFEVSM----------SRTVREEFMSAF-------KEEMEIAGK 195
+V+ K + + + + + V +E AF +
Sbjct: 63 DVLYDGERKKGYEIRR--NIGIAFQYPEDQFFAERVFDEV--AFAVKNFYPDRDPV---- 114
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
V+KA+E V LD K DR
Sbjct: 115 -PLVKKAME------------------------FVGLDFDSFK---------------DR 134
Query: 256 LVASFSSGWQM-RMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDV 307
+ S G + R+++ +++ +PD+L+LDEP LD L +E
Sbjct: 135 VPFFLSGG-EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVE----KWKTLGK 189
Query: 308 PMVIISHDRAFLDQLCTKIV 327
+++ISHD + ++V
Sbjct: 190 TVILISHDIETVINHVDRVV 209
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 2e-18
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 36/203 (17%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y ++ + NL ++ G+ A++G +GCGKST ++L+ L P G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 482 LLGEHNVL-----------------PNYFEQNQAE--ALDLDKTVLETVAEAAEDWRIDD 522
+ ++ P F AE + ++ + +A ++ D
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507
Query: 523 -IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
I L D V + LSGG+K R+A + +V+ +L+LDE T+ LD
Sbjct: 508 FIMKL-------PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560
Query: 578 SKEMLEEAISEY-KG-TVITVSH 598
S+ +++ A+ + +G T I ++H
Sbjct: 561 SEAVVQAALDKAREGRTTIVIAH 583
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 7e-16
Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 50/232 (21%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V + F Y + +L +++G+ A++G +GCGKST+++L+ P G V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 482 LLGEHNV----LPNYFEQ-----------------NQAEALDLDKTVLETVAEAAEDWRI 520
L + + Q N A + E + AA++ I
Sbjct: 1091 FLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANI 1150
Query: 521 DD-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
I L D + +V + LSGG+K R+A + +V+ +L+LDE T+ LD
Sbjct: 1151 HQFIDSL-------PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 576 IPSKEMLEEAISEY-KG-TVITVSH--------DRYFVKQIVN-RVVEVKGS 616
S+++++EA+ + +G T I ++H D V I N +V E G+
Sbjct: 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV--IQNGKVKE-HGT 1252
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 56/262 (21%), Positives = 99/262 (37%), Gaps = 79/262 (30%)
Query: 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGA--SSISSGVKLENISKSY---KGVTV 112
AKA + E + S G + + V+ + +Y + V
Sbjct: 993 DYAKATVSASHIIRI----IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV 1048
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNV------IKAKSNMK- 162
L+ ++ EVKKG+ + LVG +G GK+T ++ E +P +G+V IK + N++
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKST---VVQLLERFYDPMAGSVFLDGKEIK-QLNVQW 1104
Query: 163 ----IAFLSQE---FEVSMSRTVRE------EFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ +SQE F ++ E EE+ A
Sbjct: 1105 LRAQLGIVSQEPILF----DCSIAENIAYGDNSRVVSYEEIVRA---------------- 1144
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
A+ N+ + L P+ + GD+ S G + R++
Sbjct: 1145 -----------------AKEANIHQF---IDSL-PD-KYNTRVGDKGT-QLSGGQKQRIA 1181
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
+ + L++ P +LLLDE T+ LD
Sbjct: 1182 IARALVRQPHILLLDEATSALD 1203
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 77/260 (29%)
Query: 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGA--SSISSGVKLENISKSY---KGVTV 112
+ A A+ +F +NK + S +G +I ++ +NI SY K V +
Sbjct: 350 AFANARGAAYEVFKI----IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI 405
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------IKAKSNMK---- 162
LK + +VK G+ V LVG +G GK+T ++++ +P G V I+ N++
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR-TINVRYLRE 464
Query: 163 -IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GK----LERVQKALESAVDDMDLM 213
I +SQE F + T+ E I G+ ++ ++KA++ A
Sbjct: 465 IIGVVSQEPVLF----ATTIAE----------NIRYGREDVTMDEIEKAVKEA------- 503
Query: 214 GRLLDEF-DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLG 271
+F L + DTL +G + G +L SG Q R+++
Sbjct: 504 --NAYDFIMKLPHQ-----FDTL----------VG---ERGAQL-----SGGQKQRIAIA 538
Query: 272 KILLQDPDLLLLDEPTNHLD 291
+ L+++P +LLLDE T+ LD
Sbjct: 539 RALVRNPKILLLDEATSALD 558
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 2e-17
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 45/204 (22%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ I++L +++ L + +L +E GE I+GP G GK+ L+LI G P G +LL
Sbjct: 1 MIEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 484 GEHNV--LP-----------NY--F-----EQNQAEALDLDKT-VLETVAEAAEDWRIDD 522
+V L NY F ++N + + K + V + A D +I+
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE- 118
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK-- 579
+LDR LSGGE+ R+A + +V P LL LDEP + LD +
Sbjct: 119 ------------HLLDRNPLTLSGGEQQRVALARALVTNPKILL-LDEPLSALD--PRTQ 163
Query: 580 -EMLEE--AISEYKG-TVITVSHD 599
E + + TV+ ++HD
Sbjct: 164 ENAREMLSVLHKKNKLTVLHITHD 187
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++E++S+ + L +++ +V+ GE ++G GAGKT L +IAG PDSG ++
Sbjct: 2 IEIESLSRKW-KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 54/213 (25%)
Query: 425 VTIKNLE--FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +KN+ F + + N+ IE GE+ I+GP+G GK+T +++I GL+ P GE+
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 483 LGEHNV-------LP-----------NY-------FEQNQAEALDLDKT----VLETVAE 513
+ V +P + +N A L K + + V E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 514 AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
A+ I +L+ LSG ++ R+A + +VK +LL+LDEP ++
Sbjct: 124 VAKILDIH-------------HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 574 LDIPSK---EMLEEAIS----EYKGTVITVSHD 599
LD ++ + T++ VSHD
Sbjct: 171 LD--ARMRDSARAL-VKEVQSRLGVTLLVVSHD 200
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 71/219 (32%)
Query: 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++N+SK +K V L +V ++ GE+ G++G +GAGKTT +RIIAG + P +G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 154 VI---KAKSNMKIAFLS-QEFEVSM---------SRTVREEFMSAF--------KEEMEI 192
+ + ++ + ++ ++ M + T E + AF KEE+
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFEN-I-AFPLTNMKMSKEEIR- 118
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+RV++ + +LD +L + +
Sbjct: 119 ----KRVEEVAK-----------ILDIHHVLNHFPREL---------------------- 141
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S Q R++L + L++DP LLLLDEP ++LD
Sbjct: 142 --------SGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 7e-17
Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 441 NRANLTIERG-EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY----- 492
R N+ E G + ++GP G GKS L+LI G+ KP GEV L ++ LP
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG 73
Query: 493 --FEQNQAEALDLDKTVLETVA------EAAE-DWRIDDIKGLLGRCNFKADMLDRKVSL 543
Q AL +V +A E E D R+ ++ LG A +LDRK +
Sbjct: 74 FVP---QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI----AHLLDRKPAR 126
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLEE--AISEYKG-TVITVSHD 599
LSGGE+ R+A + +V LL+LDEP + +D+ ++EE + ++ V+HD
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
K + D + L+G GAGK+ L +IAG +PD G V
Sbjct: 6 RAEKRLGNFRLNVDFE---MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR 56
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 49/207 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ + + N NL I+ GE A++GP+G GKSTLL I G+ KP G++
Sbjct: 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
E +V LP N+ +N A L+L K + + V E A+ I
Sbjct: 64 EKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI 123
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK 579
D +L+R LSGG++ R+A + +V +P LL LDEP ++LD +
Sbjct: 124 D-------------KLLNRYPWQLSGGQQQRVAIARALVKEPEVLL-LDEPLSNLD--AL 167
Query: 580 ---EMLEEAIS----EYKGTVITVSHD 599
E+ E + E T + V+HD
Sbjct: 168 LRLEVRAE-LKRLQKELGITTVYVTHD 193
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 54/207 (26%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--- 152
+KLENI K + T L ++ ++K GE + L+G +G+GK+T L IAG +P SG
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 153 ------NVIKAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ K + + + Q + + M TV + + AF E+ A + E +K E
Sbjct: 62 FDEKDVTELPPK-DRNVGLVFQNWALYPHM--TVYKN-I-AFPLELRKAPREEIDKKVRE 116
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
A ++L LL R + S G
Sbjct: 117 VA--------KMLHIDKLLNRYPWQL------------------------------SGGQ 138
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD 291
Q R+++ + L+++P++LLLDEP ++LD
Sbjct: 139 QQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 61/253 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ ENI K + L V+ V KG+ ++G NG+GK+T + +I G + D G V
Sbjct: 9 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68
Query: 155 --IKAKSNMKIAFL--------SQEFEVSMSRTVREEFMSAFKEEME--IAGKLERVQKA 202
I K ++ Q + M TV E + E + +
Sbjct: 69 KDITNKEPAELYHYGIVRTFQTPQPLK-EM--TVLENLLIGEICPGESPLNSLFYKKWIP 125
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
E + + ++L+ L DR S
Sbjct: 126 KEEEMVEKAF--KILEFLKLSHLY---------------------------DRKAGELSG 156
Query: 263 GWQMRMSLGKILLQDPDLLLLDEP--------TNHLDLDTIEWLEGYLGKQDVPMVIISH 314
G + +G+ L+ +P ++++DEP + + + + L+ + + +II H
Sbjct: 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI-FNHVLELK----AKGITFLIIEH 211
Query: 315 DRAFLDQLCTKIV 327
+ +
Sbjct: 212 RLDIVLNYIDHLY 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 6e-14
Identities = 41/207 (19%), Positives = 74/207 (35%), Gaps = 42/207 (20%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY------ 492
+ ++++ +G+ T IIGPNG GKSTL+ +I G K G V ++
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83
Query: 493 ----FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK--------------- 533
F Q ++ TVLE + + L +
Sbjct: 84 IVRTF-QTPQPLKEM--TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 534 ---ADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT---NHLDIPSKEMLE--E 584
+ + DRK LSGG+ + + M P ++V+DEP + ++
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPK-MIVMDEPIAGVAPGL--AHDIFNHVL 197
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVV 611
+ T + + H V ++ +
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLY 224
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 2e-16
Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 37/204 (18%)
Query: 424 VVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ ++++F Y+D + + + A GP+G GKST+ L+ +P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 483 LGEHNV----LPNYFEQ-----------------NQAEALDLDKTVLETVAEAAEDWRID 521
+ + L N+ Q N L+ D T E + + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYT-DEDLWQVLDLAFAR 119
Query: 522 D-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
++ + D L+ +V +SGG++ RLA + ++ +L+LDE T LD
Sbjct: 120 SFVENM-------PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172
Query: 577 PSKEMLEEAISEY-KG-TVITVSH 598
S+ M+++A+ KG T + ++H
Sbjct: 173 ESESMVQKALDSLMKGRTTLVIAH 196
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 56/213 (26%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+ ++ +Y +L+D+++E + + G +G GK+T ++ +P +G +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 155 -------IKAKS-NMKIAFLSQEFEVSMSRTVRE-----EFMSAFKEEMEIAGKLERVQK 201
I ++ +I F+SQ+ M+ T+RE E++ L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQD-SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAF--- 117
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
F V + P+ + G+R V S
Sbjct: 118 ---------------ARSF------------------VENM-PD-QLNTEVGERGV-KIS 141
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
G + R+++ + L++P +L+LDE T LD ++
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 49/207 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + NL+ + + + ++ GE A++GP+GCGK+T L ++ G+ KP GE+
Sbjct: 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
+ V +P NY +N A L + V + V E A
Sbjct: 64 DVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIAR---- 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK 579
+ ++LDRK + LSGG++ R+A + +V +P LL DEP ++LD +
Sbjct: 120 --KLLI-------DNLLDRKPTQLSGGQQQRVALARALVKQPKVLL-FDEPLSNLD--AN 167
Query: 580 ---EMLEEAIS----EYKGTVITVSHD 599
M E I E T + V+HD
Sbjct: 168 LRMIMRAE-IKHLQQELGITSVYVTHD 193
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++ N+ K + V + V++EVK GE V L+G +G GKTT L ++AG +P SG +
Sbjct: 2 PSIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 49/207 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G + G
Sbjct: 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
+ +V LP +Y +N A L + K + + V AAE
Sbjct: 72 DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE---- 127
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK 579
+ + ++L+R + LSGG++ R+A + +V +P LL +DEP ++LD +K
Sbjct: 128 --LLQI-------EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL-MDEPLSNLD--AK 175
Query: 580 ---EMLEEAIS----EYKGTVITVSHD 599
M E I + K T I V+HD
Sbjct: 176 LRVAMRAE-IKKLQQKLKVTTIYVTHD 201
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
VKLEN++K + T + + +K GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 10 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 53/213 (24%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + I +L +++ + N +L+++ GE IIG +GCGK+TLL+ + G E+P GE+
Sbjct: 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 483 LGEHNV------LP-----------NY--F-----EQNQAEALDLDKTVLETVAEAAEDW 518
L + LP F +N A L K A E
Sbjct: 63 LSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK-----GRTAQERQ 117
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK-----AR-LAFCKFMVKPSTLLVLDEPTN 572
RI+ + L G +++ R LSGG++ AR LA P +L LDEP +
Sbjct: 118 RIEAMLELTGI----SELAGRYPHELSGGQQQRAALARALA-----PDPELIL-LDEPFS 167
Query: 573 HLDIPSK---EMLEE--AISEYKG-TVITVSHD 599
LD + ++ E+ A G + + VSHD
Sbjct: 168 ALD--EQLRRQIREDMIAALRANGKSAVFVSHD 198
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 9e-15
Identities = 23/60 (38%), Positives = 41/60 (68%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ + + ++SKS++ VL D++ + GE + ++G +G GKTT LR +AG E+PDSG +
Sbjct: 2 TAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 54/270 (20%), Positives = 101/270 (37%), Gaps = 74/270 (27%)
Query: 373 INRLGAGANSGRAS--SAEKKLERLQEEEQIE-----KPFQRKQMKIRFPERGRSGRSVV 425
+ G E + L+EE +++ P + ++ +I F
Sbjct: 8 HHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEF----------- 56
Query: 426 TIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+N+ F Y R + T+ G+ A++GP+G GKST+L+L+ G + +
Sbjct: 57 --ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114
Query: 485 EHNVLPNYFEQNQAEALDLD-----------KTVL------------------ETVAEAA 515
++ + TVL + V AA
Sbjct: 115 GQDI----------SQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAA 164
Query: 516 EDWRIDD-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ I D I + +V LSGGEK R+A + ++K +++LDE
Sbjct: 165 QAAGIHDAIMAF-------PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEA 217
Query: 571 TNHLDIPSKEMLEEAISEY-KG-TVITVSH 598
T+ LD ++ ++ ++++ T I V+H
Sbjct: 218 TSALDTSNERAIQASLAKVCANRTTIVVAH 247
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ EN+ SY G L+DV++ V G+ + LVG +GAGK+T LR++ + SG +
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 61/216 (28%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + L +V+ V G+ G++G +GAGK+T +R + E P G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ + +I + Q F + SRTV +E+ K E
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP----LELDNTPKDEV 140
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ E LL L + D+ S L
Sbjct: 141 KRRVTE-----------LLSLVGLGDKH---------DSYPSNL---------------- 164
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G + R+++ + L +P +LL D+ T+ LD T
Sbjct: 165 --SGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 60/236 (25%)
Query: 418 GRSGRSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
+ ++ + N+ + +A +L + G+ +IG +G GKSTL++ + L
Sbjct: 18 DDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 474 EKPRGGEVLLGEHNVLPNYFEQNQAEALDL---------------DKTVLETVAEAAEDW 518
E+P G VL+ + +++E +TV VA E
Sbjct: 78 ERPTEGSVLVDGQELT----TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD 133
Query: 519 RID------------DIKGLLGRCNFKADMLDRKVSLLSGGEK-----AR-LAFCKFMVK 560
+ GL D D S LSGG+K AR LA
Sbjct: 134 NTPKDEVKRRVTELLSLVGL-------GDKHDSYPSNLSGGQKQRVAIARALA-----SN 181
Query: 561 PSTLLVLDEPTNHLDIPSK-----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
P LL D+ T+ LD P+ E+L++ T++ ++H+ VK+I + V
Sbjct: 182 PKVLLC-DQATSALD-PATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVA 235
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 33/214 (15%)
Query: 410 MKIRFPERGRSGRSVVTIKNLEFGYEDRLL-FNRANLTIERGEKTAIIGPNGCGKSTLLK 468
M+ ++ +E Y + I GE ++GP+G GK+T+L+
Sbjct: 1 MRGHHHHHHHGSMTI-EFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILR 59
Query: 469 LIMGLEKPRGGEVLLGEHNV--LPNY-------FEQNQAEALDLDKTVLETVA------- 512
LI GLE+P G+V +G V LP F Q AL TV + V+
Sbjct: 60 LIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF---QNYALFQHMTVYDNVSFGLREKR 116
Query: 513 --EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDE 569
+ D R+ ++ + +R LSGG++ R+A + + +P LL DE
Sbjct: 117 VPKDEMDARVRELLRFMRL----ESYANRFPHELSGGQQQRVALARALAPRPQVLL-FDE 171
Query: 570 PTNHLDIP-SKEMLEE--AISEYKG-TVITVSHD 599
P +D +E+ + + G T + V+HD
Sbjct: 172 PFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 7e-15
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 85 KQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII 143
+ + S ++ + K Y G ++ V++++++GE VGL+G +G+GKTT LR+I
Sbjct: 2 RGHHHHHHHGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLI 61
Query: 144 AGQEEPDSGNVI 155
AG E P G+V
Sbjct: 62 AGLERPTKGDVW 73
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 74.4 bits (184), Expect = 4e-15
Identities = 53/195 (27%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y+ ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 483 LGEHN---VLPNYFEQN----QAEALDLDKTVLETVAEAAEDWRIDDIKG---LLGRCNF 532
+ H+ PN+ + + + L++++++ ++ A ++ + L G +F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 533 KADM---LDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+++ + V + LSGG++ R+A + +V +L+ DE T+ LD S+ ++
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 586 ISEY-KG-TVITVSH 598
+ + KG TVI ++H
Sbjct: 188 MHKICKGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 56.3 bits (137), Expect = 5e-09
Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 64/214 (29%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ NI YK +L ++ +K+GE +G+VG +G+GK+T ++I P++G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GK----LE 197
++ + Q+ +R++ + I+ +E
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLL----NRSIID----------NISLANPGMSVE 113
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+V A + A +F +S+L E G+ G++
Sbjct: 114 KVIYAAKLAG---------AHDF------------------ISEL-RE-GYNTIVGEQGA 144
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+++ + L+ +P +L+ DE T+ LD
Sbjct: 145 -GLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 5e-15
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 36/201 (17%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
NL I+ GE +I+GP+G GKST+L +I L+KP GEV + N + ++ +
Sbjct: 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT--NDLDDDELTKIRR 82
Query: 504 DK--------------TVLETV---------AEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
DK T LE V + + R L + + K
Sbjct: 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK 142
Query: 541 VSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK------EMLEEAISEYKGTV 593
+ LSGG++ R+A + + P +L D+PT LD SK ++L++ E TV
Sbjct: 143 PNQLSGGQQQRVAIARALANNPPIILA-DQPTWALD--SKTGEKIMQLLKKLNEEDGKTV 199
Query: 594 ITVSHDRYFVKQIVNRVVEVK 614
+ V+HD V + R++ +K
Sbjct: 200 VVVTHDIN-VARFGERIIYLK 219
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 6e-09
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 70/247 (28%)
Query: 98 VKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG- 152
VKL+N++K+YK + LK+V +K+GE V ++G +G+GK+T L II ++P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 153 ------NVIKAKS-------NMKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLE 197
KI F+ Q+F + T E E FK ++G+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRL 256
R ++ALE L +L +R + P +L
Sbjct: 121 RRKRALE-----------CLKMAELEER-------------FANHKPNQL---------- 146
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPM 309
S G Q R+++ + L +P ++L D+PT LD + ++ L GK +
Sbjct: 147 ----SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKT---V 199
Query: 310 VIISHDR 316
V+++HD
Sbjct: 200 VVVTHDI 206
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 6e-15
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 41/207 (19%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V +++ F Y + + T+ G+ TA++GPNG GKST+ L+ L +P GG+V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 482 LLGEHNVL-----------------PNYF----EQNQAEALDLDKTVLETVAEAAEDWRI 520
LL ++ P F +N A L T +E + A +
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT-MEEITAVAMESGA 135
Query: 521 DD-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
D I G D +V + LSGG++ +A + +++ LL+LD T+ LD
Sbjct: 136 HDFISGF-------PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 576 IPSKEMLEEAI---SEYKG-TVITVSH 598
++ ++ + E+ TV+ ++
Sbjct: 189 AGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 4e-08
Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 72/219 (32%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDS 151
VK +++S +Y V VL+ +T+ + G+ LVG NG+GK+T + A + +P
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST---VAALLQNLYQPTG 73
Query: 152 GNV------IKAKSNMK-----IAFLSQE---FEVSMSRTVRE-----EFMSAFKEEMEI 192
G V + + + +A + QE F R+ RE + EE+
Sbjct: 74 GKVLLDGEPLV-QYDHHYLHTQVAAVGQEPLLF----GRSFRENIAYGLTRTPTMEEITA 128
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+ A + +S P+ G+ +
Sbjct: 129 VAME------------------------------SGAHDF------ISGF-PQ-GYDTEV 150
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G+ S G + ++L + L++ P LL+LD T+ LD
Sbjct: 151 GETGN-QLSGGQRQAVALARALIRKPRLLILDNATSALD 188
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 7e-15
Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 63/233 (27%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ +N++ + +L++++GE +IIG +G GKSTLL ++ L+ P G+V
Sbjct: 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 483 L-GE------------------------HNVLPN------------YFEQNQAEALDLDK 505
L G+ H ++P + + EA + +
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGE 122
Query: 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTL 564
+L + GL + L RK LSGGE+ R+A + + +P L
Sbjct: 123 YLLSEL-------------GLGDK-------LSRKPYELSGGEQQRVAIARALANEPILL 162
Query: 565 LVLDEPTNHLD-IPSKEMLE--EAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
DEPT +LD +K +++ I+E +++ V+H+R + ++ +R +E+K
Sbjct: 163 FA-DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LAELTHRTLEMK 213
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 7e-13
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 61/238 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
++ ENI K +G +LK ++ VKKGE V ++G +G+GK+T L I+ + P G
Sbjct: 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64
Query: 153 --NVIKAKS-------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLERVQK 201
V N K+ F+ Q + T E + M G K E ++
Sbjct: 65 GKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVP----MLKMGKPKKEAKER 120
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
LL E L + L K +L S
Sbjct: 121 GEY-----------LLSELGLGDK---------LSRKPYEL------------------S 142
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDR 316
G Q R+++ + L +P LL DEPT +LD + + + + +V+++H+R
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 9e-15
Identities = 86/495 (17%), Positives = 149/495 (30%), Gaps = 134/495 (27%)
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLD---TIEWLEGYLGKQDVPMVIISHD-----R 316
M G+ Q D+L + E + D + + L K+++ +I+S D
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 317 AFLDQLCTKIVET-EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQRE------IEQ- 368
L +K E + V NY ++ S E++Q IEQ
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYK--------FLMSPIKT-EQRQPSMMTRMYIEQR 116
Query: 369 ----------TKDLINR-------------------------LGAG-------------- 379
K ++R LG+G
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 380 ----------ANSGRASSAEKKLERLQE-EEQIEKPF-QRKQMKIRFPERGRSGRSVVTI 427
N +S E LE LQ+ QI+ + R R S ++ +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 428 KNLEFGYEDRLL-------------FN---RANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
YE+ LL FN + LT + T + +L M
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW--RIDDIKGLLGR 529
L +LL L + E L + L +AE+ D D+ K +
Sbjct: 297 TLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--N 351
Query: 530 CNFKADMLDRKVSLLSGGEKARL--AFCKFM--VK-PSTLLVL-------DEP---TNHL 574
C+ +++ +++L E ++ F P+ LL L + N L
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYF-VKQIVNRVVEVKGSNLQDYAGDYNVCFTSFS 633
++E+ + K + I++ Y +K + + S + Y
Sbjct: 412 H--KYSLVEK---QPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 634 PFLLVPLRSYFFKHL 648
P L YF+ H+
Sbjct: 466 P---PYLDQYFYSHI 477
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 1e-14
Identities = 90/693 (12%), Positives = 187/693 (26%), Gaps = 224/693 (32%)
Query: 1 MDVTTTTTNLR-SSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSI 59
MD T + S + F K + + ++ E I
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP------KSILS------KEEIDHI 54
Query: 60 AKAQSDVES---LF-------SSSADEF----ENKKYS----------NKQSNTGASSIS 95
++ V LF +F Y + S I
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 96 SGVKLENISKSY--------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147
+L N ++ + + L+ E++ + V + GV G+GKT + +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLS 173
Query: 148 EP------------DSGNVIKAKSNMKI--AFLSQEFEVSMSRTVREEFMSAFKEEME-I 192
+ N ++ +++ L Q + + T R + S K + I
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSI 230
Query: 193 AGKLER--VQKALESA---VDDM-DLMGRLLDEFD------LLQRKAQAVNLDTLDAKVS 240
+L R K E+ + ++ + + + F+ L R Q D L A +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLSCKILLTTRFKQVT--DFLSAATT 286
Query: 241 KLMP----ELGFTADDGDRLVASFSSGWQMRMSLGK----ILLQDPDLL-----LLDEPT 287
+ + T D+ L+ + + +L +P L + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY-----LDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 288 NHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY-VL 346
D W ++ + +I + L+ L E R + + V
Sbjct: 342 ATWD----NWK--HVNCDKLTTII----ESSLNVL----EPAEY---RKM---FDRLSVF 381
Query: 347 EKAAWIESQYAA--WEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER-------LQE 397
+A I + + W + ++N+L + S EK+ + +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVM--VVVNKL------HKYSLVEKQPKESTISIPSIYL 433
Query: 398 EEQIEKPFQRKQMKIRFPERGRSGRSVVT---IKNLEFGY---------------EDRLL 439
E +++ + + ++ + I Y E L
Sbjct: 434 ELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 440 FNRANLT---IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496
F L +E+ K ++L + L+ + Y N
Sbjct: 493 FRMVFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQLKFYK-------------PYICDN 537
Query: 497 QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556
+ + ++ I
Sbjct: 538 ----------------DPKYERLVNAIL-------------------------------D 550
Query: 557 FMVKPSTLLVLDEPTNHLDI----PSKEMLEEA 585
F+ K L+ + T+ L I + + EEA
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 55/213 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V + ++ + + +L ++ GE ++GP+GCGK+T L++I GLE+P G++ +G
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 485 EHNV--------LP-----------NY-------FEQNQAEALDLDKT----VLETVAEA 514
+ V +P +Y N A L L K + + V E
Sbjct: 64 DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV 123
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNH 573
AE + GL ++L+RK LSGG++ R+A + +V KP L +DEP ++
Sbjct: 124 AE------LLGL-------TELLNRKPRELSGGQRQRVALGRAIVRKPQVFL-MDEPLSN 169
Query: 574 LDIPSK---EMLEEAIS----EYKGTVITVSHD 599
LD +K M E + + T I V+HD
Sbjct: 170 LD--AKLRVRMRAE-LKKLQRQLGVTTIYVTHD 199
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 6e-12
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+GV+L ++ K + VT +++++ EVK GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 59/237 (24%), Positives = 95/237 (40%), Gaps = 43/237 (18%)
Query: 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKST 465
RG ++ + L+ + + N+ I GE +IGP+G GKST
Sbjct: 6 HHHHHSSGLVPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKST 65
Query: 466 LLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA----------LDLDKTVLETVAEA- 514
L+ + LE GE+++ N+ N+ L TVL + A
Sbjct: 66 FLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP 125
Query: 515 ----------AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA----FCKFMVK 560
AE ++ LL + D LSGG+ R+A M +
Sbjct: 126 MKVRKWPREKAEAKAME----LLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALA--M-E 177
Query: 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG------TVITVSHDRYFVKQIVNRVV 611
P +L DEPT+ LD P EM+ E +S K T++ V+H+ F +++ +RV+
Sbjct: 178 PKIML-FDEPTSALD-P--EMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVL 230
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 60/273 (21%), Positives = 105/273 (38%), Gaps = 82/273 (30%)
Query: 89 TGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
S + + + + KS+ + VLK + +++GE V ++G +G+GK+T LR + E+
Sbjct: 16 PRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75
Query: 149 PDSGNVI--------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194
D G +I K + + + F Q F + TV A M++
Sbjct: 76 FDEGEIIIDGINLKAKDTNLNKVREEVGMVF--QRFNLFPHMTVLNNITLA---PMKVRK 130
Query: 195 --KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+ + KA+E LL + V L D
Sbjct: 131 WPREKAEAKAME-----------------LLDK----VGL-----------------KDK 152
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQ 305
S S G R+++ + L +P ++L DEPT+ LD L ++ L +
Sbjct: 153 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK----QLANE 208
Query: 306 DVPMVIISH---------DR-AFLDQLCTKIVE 328
+ MV+++H DR F+D I+E
Sbjct: 209 GMTMVVVTHEMGFAREVGDRVLFMDG--GYIIE 239
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 55/211 (26%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L G+ +IIG +G GKST L+ I LEKP G +++ N+ + Q + D
Sbjct: 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85
Query: 504 D---------------------KTVLETVAEAAEDWRIDDIKGLLGR----CNFKADMLD 538
+ TVLE V EA I+ +LG +A
Sbjct: 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP-------IQ-VLGLSKHDARERALKYL 137
Query: 539 RKVSL-----------LSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
KV + LSGG++ R++ + + ++P LL DEPT+ LD P E++ E +
Sbjct: 138 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL-FDEPTSALD-P--ELVGEVL 193
Query: 587 SEYKG------TVITVSHDRYFVKQIVNRVV 611
+ T++ V+H+ F + + + V+
Sbjct: 194 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 224
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 7e-12
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 62/246 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
+ + ++ K Y G VLK V+ + + G+ + ++G +G+GK+T LR I E+P G
Sbjct: 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66
Query: 153 --NVIKAKSNMKIAFLSQEFEVSMSRT----VREEF-----MSAFKEEMEIAGKLERVQK 201
N+ + ++ + ++ + RT V + F M+ + ME ++ + K
Sbjct: 67 GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 126
Query: 202 --ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
A E A+ L + V +D + P
Sbjct: 127 HDARERALK-------------YLAK----VGID---ERAQGKYP-------------VH 153
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVII 312
S G Q R+S+ + L +PD+LL DEPT+ LD L ++ L ++ MV++
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ----QLAEEGKTMVVV 209
Query: 313 SHDRAF 318
+H+ F
Sbjct: 210 THEMGF 215
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 3e-14
Identities = 51/246 (20%), Positives = 103/246 (41%), Gaps = 54/246 (21%)
Query: 386 SSAEKKLERLQEEEQIE---KPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLF 440
++ + + E + + +R ++ K++ F Y+ ++
Sbjct: 313 AACQTLFGLMDLETERDNGKYEAERVNGEVDV-------------KDVTFTYQGKEKPAL 359
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----LPNYFEQ- 495
+ + +I +G+ A++G +G GKST+ L G + L H+V L N
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419
Query: 496 ----------------NQAEALDLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLD 538
N A A + + T E + +AA + I+ + LD
Sbjct: 420 ALVSQNVHLFNDTIANNIAYAAEGEYT-REQIEQAARQAHAMEFIENM-------PQGLD 471
Query: 539 RKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-KG-T 592
+ + LSGG++ R+A + +++ + +L+LDE T+ LD S+ ++ A+ E K T
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKT 531
Query: 593 VITVSH 598
V+ ++H
Sbjct: 532 VLVIAH 537
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 5e-08
Identities = 55/257 (21%), Positives = 109/257 (42%), Gaps = 59/257 (22%)
Query: 57 KSIAKAQSDVESLFSSSADEFE--NKKYSNKQSNTGASSISSGVKLENISKSYKG--VTV 112
K++ S+ + ++ F + + A ++ V +++++ +Y+G
Sbjct: 299 KALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA 358
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKS-NMK 162
L V++ + +G+ V LVG +G+GK+T + + DSG++ K +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 163 IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
A +SQ F + T+ A+ E E E++++A A E
Sbjct: 419 FALVSQNVHLF----NDTIANNI--AYAAEGEYT--REQIEQAARQA---------HAME 461
Query: 220 F--DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
F ++ Q LDT +G ++G L S G + R+++ + LL+D
Sbjct: 462 FIENMPQ------GLDT----------VIG---ENGTSL----SGGQRQRVAIARALLRD 498
Query: 278 PDLLLLDEPTNHLDLDT 294
+L+LDE T+ LD ++
Sbjct: 499 APVLILDEATSALDTES 515
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 8e-14
Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 52/246 (21%)
Query: 385 ASSAEKKLERLQEEEQI---EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLL 439
++ + L E++ ++ R + F +N+ F Y +
Sbjct: 312 MAACQTLFAILDSEQEKDEGKRVIDRATGDLEF-------------RNVTFTYPGREVPA 358
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----LPNYFEQ 495
NL I G+ A++G +G GKST+ LI G +L+ H++ L + Q
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418
Query: 496 ----NQAEAL------------DLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLD 538
+Q L ++ E + EAA D I + + LD
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKM-------DNGLD 471
Query: 539 RKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-KG-T 592
+ LLSGG++ R+A + +++ S +L+LDE T+ LD S+ ++ A+ E K T
Sbjct: 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRT 531
Query: 593 VITVSH 598
+ ++H
Sbjct: 532 SLVIAH 537
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 65/218 (29%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
++ N++ +Y G V L+++ ++ G+ V LVG +G+GK+T +I + D G++
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKL----- 196
S ++A +SQ F + TV IA +
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLF----NDTVAN----------NIAYARTEEYSR 447
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
E++++A A +F ++K+ G G+
Sbjct: 448 EQIEEAARMA---------YAMDF------------------INKM-DN-GLDTIIGENG 478
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
V S G + R+++ + LL+D +L+LDE T+ LD ++
Sbjct: 479 V-LLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 48/214 (22%), Positives = 86/214 (40%), Gaps = 59/214 (27%)
Query: 425 VTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---- 477
+ ++ F Y + N I G A++G G GKST+ KL+ R
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL-----YRFYDA 72
Query: 478 GGEVLLGEHNVLPNYFEQNQAEALDLDK--------TVL------------------ETV 511
G++ +G NV N+ + T+L E V
Sbjct: 73 EGDIKIGGKNV-------NKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEV 125
Query: 512 AEAAEDWRIDD-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLV 566
+A + ++ D I+ L D V LSGGE+ R+A + ++K +++
Sbjct: 126 IKATKSAQLYDFIEAL-------PKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI 178
Query: 567 LDEPTNHLDIPSKEMLEEAISEY-KG-TVITVSH 598
DE T+ LD ++ + ++A+ + K T+I ++H
Sbjct: 179 FDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH 212
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 4e-07
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 87 SNTGASSISSG-VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI 142
S T ++ +++ SY LK + + + G LVG G+GK+T ++
Sbjct: 6 SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 143 I 143
+
Sbjct: 66 L 66
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 1e-13
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 28/167 (16%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+++L Y +L + RG+ +IG NG GK+T L I GL + + G+++
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 486 HNVLPNYFEQNQAEALDLDKTVLE--------TVAE------------AAEDWRIDDIKG 525
++ + L V E TV E ++ I
Sbjct: 68 QDITNKPAHVINRMGIAL---VPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT 571
L R + L + LSGGE+ LA + M +P LL++DEP+
Sbjct: 125 LFPRL---KERLKQLGGTLSGGEQQMLAIGRALMSRPK-LLMMDEPS 167
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 6e-13
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++++ Y + +K + +V +G+ V L+G NGAGKTT L IAG G +
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-13
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 40/206 (19%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR----G 478
S + I++L + + NL + +GE A++GPNG GKSTL K++ G P
Sbjct: 2 SQLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVER 59
Query: 479 GEVLLGEHNVLPNYFEQNQAEALDLD----------------KTVLETVAEAAEDWR--I 520
GE+LL N+L ++ + L L + L+
Sbjct: 60 GEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSL-LSGGEKAR-----LAFCKFMVKPSTLLVLDEPTNHL 574
+K L ++ L R ++ SGGEK R L +++P+ VLDE + L
Sbjct: 120 TKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL----VLEPT-YAVLDETDSGL 174
Query: 575 DIPSKEMLEEAISEYKGT-----VIT 595
DI + +++ ++ +G VIT
Sbjct: 175 DIDALKVVARGVNAMRGPNFGALVIT 200
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 3e-13
Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 50/262 (19%)
Query: 366 IEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV 425
+ + L +S ++ + + E+ I+ + ++ ++GR +
Sbjct: 294 LRRLVASFTTLTQSF-----ASMDRVFQLIDEDYDIKNGVGAQPIE---IKQGR-----I 340
Query: 426 TIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
I ++ F Y D + NL+IE+GE A +G +G GKSTL+ LI G++L+
Sbjct: 341 DIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400
Query: 484 GEHNV----LPNYFEQ----NQAEAL------------DLDKTVLETVAEAAEDWRIDD- 522
HN+ + Q Q L T E V EAA+ D
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT-DEEVVEAAKMANAHDF 459
Query: 523 IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
I L D +V LSGG+K RL+ + + +L+LDE T+ LD+ S
Sbjct: 460 IMNL-------PQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
Query: 579 KEMLEEAISEY-KG-TVITVSH 598
+ +++EA+ K T + V+H
Sbjct: 513 ESIIQEALDVLSKDRTTLIVAH 534
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 64/217 (29%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ ++++S Y +LKD+ ++KGE V VG++G GK+T + +I + SG +
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKL----E 197
S +I + Q+ F S TV+E I G+ E
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILF----SDTVKE----------NILLGRPTATDE 445
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
V +A A+ N + L P+ G+ + G+R V
Sbjct: 446 EVVEA------------------------AKMANAHDF---IMNL-PQ-GYDTEVGERGV 476
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G + R+S+ +I L +P +L+LDE T+ LDL++
Sbjct: 477 -KLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 5e-13
Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 39/176 (22%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
E + P +Y +N + L L + + V + AE
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE---- 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLD 575
+ L A +LDRK LSGG++ R+A + +V +PS L LDEP ++LD
Sbjct: 120 --VLQL-------AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL-LDEPLSNLD 165
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 5e-12
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ V+L+N++K++ V V KD+ ++ +GE V VG +G GK+T LR+IAG E SG++
Sbjct: 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 50/240 (20%), Positives = 89/240 (37%), Gaps = 72/240 (30%)
Query: 407 RKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTL 466
G +++IK+L ED+ + +L + GE AI+GPNG GKSTL
Sbjct: 3 SSHHHHHSSGLVPRGSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTL 62
Query: 467 LKLIMGLEKPR----GGEVLLGEHNVL------------------P--------NYF--- 493
+ G + GG V ++L P +F
Sbjct: 63 SATLAG--REDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 120
Query: 494 -------EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-LS 545
+ Q D + + E ++ + D+L R V++ S
Sbjct: 121 ALNAVRSYRGQETLDRFD--FQDLMEEKIALLKMPE------------DLLTRSVNVGFS 166
Query: 546 GGEKAR-----LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGT-----VIT 595
GGEK R +A +++P L +LDE + LDI + +++ + ++ + ++T
Sbjct: 167 GGEKKRNDILQMA----VLEPE-LCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVT 221
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 6e-12
Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 52/247 (21%)
Query: 384 RAS-SAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLF 440
RAS SA++ LE L E+ IE+ + V+ +N+EF Y +
Sbjct: 308 RASASAKRVLEVLNEKPAIEEADN--------ALALPNVEGSVSFENVEFRYFENTDPVL 359
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE- 499
+ N +++ G A++G G GKSTL+ LI L P G V + E +V +
Sbjct: 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR----TVKLKDL 415
Query: 500 ----ALDLDKTVL------------------ETVAEAAEDWRIDD-IKGLLGRCNFKADM 536
+ +TVL + + EAA+ +I D I +
Sbjct: 416 RGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIIS-------LPEG 468
Query: 537 LDRKVSL----LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG- 591
D +V SGG+K RL+ + +VK +L+LD+ T+ +D +++ + + + Y
Sbjct: 469 YDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKG 528
Query: 592 -TVITVS 597
T ++
Sbjct: 529 CTTFIIT 535
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
V EN+ Y T VL V + VK G V ++G G+GK+T + +I +P+ G V
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-11
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 373 INRLGAGAN---SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKN 429
+N L N AS AE+ E L EE+ + P + ++R G + KN
Sbjct: 310 LNELSNQFNMIQMALAS-AERIFEILDLEEEKDDPDAVELREVR-------GE--IEFKN 359
Query: 430 LEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ F Y + + + I+ G+K A++GP G GK+T++ L+M G++L+ ++
Sbjct: 360 VWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI 419
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTT 138
++ +N+ SY K VLKD+T+ +K G+KV LVG G+GKTT
Sbjct: 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTT 396
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 50/209 (23%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ +++++ Y G +L+++++ + G++VGL+G G+GK+T L G +
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGEIQ 78
Query: 156 KAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + Q+ S T R+ + + + + K +
Sbjct: 79 IDGVSWDSITLEQWRKAFGVIPQK-VFIFSGTFRKN-LDPNAAHSD-----QEIWKVADE 131
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L + K LD + D G S G +
Sbjct: 132 V--------GLRSVIEQFPGK--------LDFVLV----------DGGC----VLSHGHK 161
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
M L + +L +LLLDEP+ HLD T
Sbjct: 162 QLMCLARSVLSKAKILLLDEPSAHLDPVT 190
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 5e-10
Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 42/212 (19%)
Query: 415 PERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472
P G+ +T+K+L Y + + +I G++ ++G G GKSTLL +
Sbjct: 15 PSGGQ-----MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
Query: 473 LEKPRGGEVL-------LGEHN------VLPNYFEQNQAEAL-------DLDKTVLETVA 512
L G + + V+P Q + +LD +
Sbjct: 70 LLNTEGEIQIDGVSWDSITLEQWRKAFGVIP------QKVFIFSGTFRKNLDPNAAHSDQ 123
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLD 568
E W++ D GL LD + +LS G K + + ++ + +L+LD
Sbjct: 124 EI---WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 569 EPTNHLDIPSKEMLEEAI-SEYKG-TVITVSH 598
EP+ HLD + +++ + + TVI
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEA 212
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 7e-10
Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 59/220 (26%)
Query: 425 VTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V ++N+ +E+ N IERG+ A+ G G GK++LL +IMG +P G++
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 483 LG-----------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ N++ F D+ +V +A
Sbjct: 67 HSGRISFCSQFSWIMPGTIKENII---FGV------SYDEYRYRSVIKA----------- 106
Query: 526 LLGRCNFKAD--ML---------DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
C + D + ++ LSGG++AR++ + + K + L +LD P +L
Sbjct: 107 ----CQLEEDISKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYL 161
Query: 575 DI-PSKEMLEEAISEY-KG-TVITVSHDRYFVKQIVNRVV 611
D+ KE+ E + + T I V+ +K+ ++++
Sbjct: 162 DVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKIL 200
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 14/115 (12%)
Query: 93 SISSG-VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149
S+++ V +EN++ + G VLKD+ +++++G+ + + G GAGKT+ L +I G+ EP
Sbjct: 1 SLTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60
Query: 150 DSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKA 202
G + K + +I+F SQ + M T++E F ++ E + V KA
Sbjct: 61 SEGKI---KHSGRISFCSQFSWI-MPGTIKENIIFGVSYDEY-----RYRSVIKA 106
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 7e-09
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 537 LDRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
+R ++ LSGGE+ RLA ++ +LL+LDEPT +LD + L + Y
Sbjct: 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 301
Query: 591 ---GTVITVSHDRYFVKQIVNRVVEVK 614
VI VSHD + V+ +
Sbjct: 302 KKIPQVILVSHDEELKD-AADHVIRIS 327
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 2e-07
Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 12/180 (6%)
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQR 225
+ + + T ++ +E+V+K A + + + +
Sbjct: 157 VREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSK--IGELASEIFA 214
Query: 226 KAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM------RMSLGKILLQDPD 279
+ + + + L + +R + S G ++ R+++ L +
Sbjct: 215 EFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEIS 274
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI-ISHDRAFLDQLCTKI-VETEMGVSR 335
LL+LDEPT +LD + L + + + +P VI +SHD D I + E G S+
Sbjct: 275 LLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSK 334
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 537 LDRKVSLLSGGEKAR------LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
+R ++ LSGGE+ LA ++ +LL+LDEPT +LD + L + Y
Sbjct: 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 110
Query: 591 G---TVITVSHDRYFVK 604
VI VSHD
Sbjct: 111 KKIPQVILVSHDEELKD 127
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 425 VTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG 478
+T++N F + N +I G A++G GCGKS+LL ++ ++K G
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ + N + ++ L +T+ + +G V +VG G GK++ L + + + G+V
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV- 62
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKA 202
+A++ Q+ + + ++RE F +E V +A
Sbjct: 63 --AIKGSVAYVPQQAWI-QNDSLRENILFGCQLEEP-----YYRSVIQA 103
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 51/258 (19%), Positives = 99/258 (38%), Gaps = 61/258 (23%)
Query: 386 SSAEKKLERLQEE-EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
S+ E +E + E+ K + + +G ++ N L N
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVL--KDIN 58
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-----------------EHN 487
IERG+ A+ G G GK++LL +IMG +P G++ + N
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKEN 118
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD--ML-------- 537
++ + D+ +V +A C + D
Sbjct: 119 II----------GVSYDEYRYRSVIKA---------------CQLEEDISKFAEKDNIVL 153
Query: 538 -DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI-PSKEMLEEAISEY-KG-TV 593
+ ++ LSGG++AR++ + + K + L +LD P +LD+ KE+ E + + T
Sbjct: 154 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 594 ITVSHDRYFVKQIVNRVV 611
I V+ +K+ ++++
Sbjct: 213 ILVTSKMEHLKK-ADKIL 229
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 62 AQSDVE----SLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVT 117
+ ++V + F +K +N S+ + N S VLKD+
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGT--PVLKDIN 58
Query: 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177
+++++G+ + + G GAGKT+ L +I G+ EP G + K + +I+F SQ + M T
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQNSWI-MPGT 114
Query: 178 VRE 180
++E
Sbjct: 115 IKE 117
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
R + MS ++E E K + L +++ L +K D
Sbjct: 196 RLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLP 255
Query: 239 VSKL----MPELGFTADDGDRLVASFSSGWQMRMSLG-------KILLQDPDLLLLDEPT 287
S + E+ A +G + + S G Q+ ++L ++ + ++LDEPT
Sbjct: 256 YSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPT 315
Query: 288 NHLDLDTIEWLEGYLGK-QDVP-MVIISHDRAFLDQLCTKI-VETEMGVSR 335
+LD + L K + +P M+II+H R D I V+ + VS+
Sbjct: 316 VYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGNVSK 366
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 7e-06
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 538 DRKVSLLSGGEKARLAFC-------KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
+ LSGGE+ +A + ++LDEPT +LD + L E + K
Sbjct: 275 VLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK 334
Query: 591 --GTVITVSHDRYFVKQIVNRVVEVK 614
+I ++H R + + + ++ VK
Sbjct: 335 SIPQMIIITHHREL-EDVADVIINVK 359
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-05
Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 31/180 (17%)
Query: 452 KTAIIGPNGCGKSTLL-KLIMGLEKPRGG----EVLLGEHNVLPNYFEQNQAEALDLDKT 506
K I G G GK+TL+ K++ L K G EV E +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGF-----------RII 50
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566
E + K L+G + A+ + +++
Sbjct: 51 TTEGKKKIFSSKFFTSKK-LVGSYGVNVQYFEE-----LAIPILERAYREAKKDRRKVII 104
Query: 567 LDE--PTNHLDIPSKEMLEEAISEYKGTVITVSHDRY---FVKQIVNR----VVEVKGSN 617
+DE ++++ + + + V+ R VK+I ++E+ N
Sbjct: 105 IDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPEN 164
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 652 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.98 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.95 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.95 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.92 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.92 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.91 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.88 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.88 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.88 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.88 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.87 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.86 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.86 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.85 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.85 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.85 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.84 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.84 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.84 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.83 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.82 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.82 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.81 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.81 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.81 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.81 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.81 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.81 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.8 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.8 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.8 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.8 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.8 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.79 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.79 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.77 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.77 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.77 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.76 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.76 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.76 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.76 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.76 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.76 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.76 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.75 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.74 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.74 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.73 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.73 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.73 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.73 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.73 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.72 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.72 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.71 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.71 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.7 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.7 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.7 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.7 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.69 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.69 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.66 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.66 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.65 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.64 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.63 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.62 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.62 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.61 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.61 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.61 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.6 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.6 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.59 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.58 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.58 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.57 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.56 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.55 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.54 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.54 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.53 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.53 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.53 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.51 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.49 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.47 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.46 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.46 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.46 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.45 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.44 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.44 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.43 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.43 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.42 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.41 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.4 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.38 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.37 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.37 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.36 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.36 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.36 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.35 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.34 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.34 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.33 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.3 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.29 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.29 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.29 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.28 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.28 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.28 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.26 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.25 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.25 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.25 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.23 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.22 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.22 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.22 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.22 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.21 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.19 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.17 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.17 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.16 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.15 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.14 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.13 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.13 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.13 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.12 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.12 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.11 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.11 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.1 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.08 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.07 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.07 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.02 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.02 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.02 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.02 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.01 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.0 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.0 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.99 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.97 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.97 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.94 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.93 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.92 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.91 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.91 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.91 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.89 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.88 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.85 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.74 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.73 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.7 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.69 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.68 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.67 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.67 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.67 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.64 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.64 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.62 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.61 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.6 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.59 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.58 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.58 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.53 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.52 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 98.5 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.5 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.48 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.46 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.45 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.44 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.44 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.43 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.4 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.38 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.33 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.33 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.32 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.31 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.29 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.29 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.28 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.28 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.28 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.27 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.26 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.24 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.22 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.21 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.21 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.2 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.18 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.14 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.13 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.09 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 98.09 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.08 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.05 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.02 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.02 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.01 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.01 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.99 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.98 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.98 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.97 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.97 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.95 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.92 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.92 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.91 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.89 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.89 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.89 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.88 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.88 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.86 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.85 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.84 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.84 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.84 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.83 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.82 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.81 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.8 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.79 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.78 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.77 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.77 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.75 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.73 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.73 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.72 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.72 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.7 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.68 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.67 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.66 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.65 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.63 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.62 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.61 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.61 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.6 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.56 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.54 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.53 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.5 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.5 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.48 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.48 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.48 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.45 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.44 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.42 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 97.4 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.36 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.35 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.35 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.32 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.31 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.31 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.31 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.28 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.27 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.25 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.22 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.21 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.19 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.19 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.19 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.19 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.16 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.15 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.14 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.11 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.1 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.08 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.08 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.08 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.08 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.05 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.04 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.01 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.99 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.95 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.93 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.91 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.9 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.86 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.85 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.83 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.82 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.82 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.81 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.81 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.8 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.78 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.77 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.77 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.77 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.76 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.76 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.75 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.74 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.71 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.71 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.71 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.67 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.64 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.63 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.61 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.59 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.55 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.53 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.52 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.5 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.48 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.47 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.44 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.44 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.43 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.42 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.41 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.41 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.4 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.34 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.33 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.32 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.31 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.29 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.25 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.25 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.25 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.19 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.18 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.17 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.14 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.13 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.1 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.1 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.06 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.06 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.04 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.97 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.95 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.95 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.94 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.9 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.89 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.89 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.89 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.89 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.84 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.82 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.8 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.78 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.76 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.76 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.75 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.7 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.7 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.7 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.69 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.69 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-77 Score=735.43 Aligned_cols=493 Identities=22% Similarity=0.352 Sum_probs=351.9
Q ss_pred CCceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------
Q 006275 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~---------- 161 (652)
...|+++|++|+|++ .++|+|+||+|++|+.+|||||+|||||||+++|+|+++|++|+|.++|.+.
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred CCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 446999999999964 5699999999999999999999999999999999999999999999998542
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
+||||+|+|++ ++.||+|||..+-.+. ..+++.++++.+. +++.+..
T Consensus 493 ~i~~v~Q~~~L-f~~TI~eNI~~g~~~~-----~~~~v~~a~~~a~---------------------------l~~~i~~ 539 (1321)
T 4f4c_A 493 NVAVVSQEPAL-FNCTIEENISLGKEGI-----TREEMVAACKMAN---------------------------AEKFIKT 539 (1321)
T ss_dssp HEEEECSSCCC-CSEEHHHHHHTTCTTC-----CHHHHHHHHHHTT---------------------------CHHHHHH
T ss_pred cccccCCccee-eCCchhHHHhhhcccc-----hHHHHHHHHHHcc---------------------------chhHHHc
Confidence 59999999998 7889999997432110 0122333332221 1111221
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (652)
+ + -|+.+..+++ ..+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++ .|+|+|+|||++..+
T Consensus 540 l-p-~G~~T~vGe~-G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 540 L-P-NGYNTLVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI 616 (1321)
T ss_dssp S-T-TTTSSEESSS-SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT
T ss_pred C-C-CCCccEecCC-CCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH
Confidence 1 1 1444444443 789999999999999999999999999999999999998888887754 589999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHHHHHHHH------------HH-------------------------------H---
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAA------------WI-------------------------------E--- 353 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~------------~~-------------------------------~--- 353 (652)
+.||+|++|++|++ +..|++++++..... .. .
T Consensus 617 -~~aD~Iivl~~G~i-ve~Gth~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1321)
T 4f4c_A 617 -RNADLIISCKNGQV-VEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIM 694 (1321)
T ss_dssp -TTCSEEEEEETTEE-EEEECHHHHHTTTCHHHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred -HhCCEEEEeeCCee-eccCCHHHHHHhhhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchh
Confidence 56999999999998 577877665321000 00 0
Q ss_pred ------------------------------H--H------------H---------------------------------
Q 006275 354 ------------------------------S--Q------------Y--------------------------------- 356 (652)
Q Consensus 354 ------------------------------~--~------------~--------------------------------- 356 (652)
. . .
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 774 (1321)
T 4f4c_A 695 NRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVF 774 (1321)
T ss_dssp ---------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHH
T ss_pred hhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0
Q ss_pred -HHHH----------------H-------------------------HHHHHHHH-----------------------HH
Q 006275 357 -AAWE----------------K-------------------------QQREIEQT-----------------------KD 371 (652)
Q Consensus 357 -~~~~----------------~-------------------------~~~~~~~~-----------------------~~ 371 (652)
..|. | ..+...++ .+
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~ 854 (1321)
T 4f4c_A 775 FTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGK 854 (1321)
T ss_dssp HHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHH
T ss_pred HHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHH
Confidence 0000 0 00000000 00
Q ss_pred HHHHhccC--------------------------------------------------------c----ccc------ch
Q 006275 372 LINRLGAG--------------------------------------------------------A----NSG------RA 385 (652)
Q Consensus 372 ~~~~l~~~--------------------------------------------------------~----~~~------~~ 385 (652)
+++++..+ . ... +.
T Consensus 855 i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1321)
T 4f4c_A 855 ISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADS 934 (1321)
T ss_dssp HHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHH
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0 000 00
Q ss_pred ----hH------------HHH----H----H-------------------------------------------------
Q 006275 386 ----SS------------AEK----K----L------------------------------------------------- 392 (652)
Q Consensus 386 ----~~------------~~~----~----l------------------------------------------------- 392 (652)
.. .+. + +
T Consensus 935 ~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~ 1014 (1321)
T 4f4c_A 935 GKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQP 1014 (1321)
T ss_dssp HHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCH
T ss_pred HHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccch
Confidence 00 000 0 0
Q ss_pred ----------------------------------HHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCC--
Q 006275 393 ----------------------------------ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-- 436 (652)
Q Consensus 393 ----------------------------------~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-- 436 (652)
+|+.+.-. .+++.. ....+...|+..+.|+++||+|+|++
T Consensus 1015 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~-~~~~~~---~~~~~~~~~~~~g~I~f~nVsf~Y~~~~ 1090 (1321)
T 4f4c_A 1015 MRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLR-KISKID---SLSLAGEKKKLYGKVIFKNVRFAYPERP 1090 (1321)
T ss_dssp HHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHH-CCCSSC---TTCCCSBCCCCCCCEEEEEEEECCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcccCC---CccCCCCCCCCCCeEEEEEEEEeCCCCC
Confidence 00000000 000000 00001122444556999999999964
Q ss_pred -eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cceecccccccCCCCC
Q 006275 437 -RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFEQNQAEALDLDK 505 (652)
Q Consensus 437 -~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~~~~~~~~~~~~~ 505 (652)
.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||.++. .++++|+ ...++.
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qd---p~LF~g 1167 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQE---PTLFDC 1167 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSS---CCCCSE
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCC---CEeeCc
Confidence 36999999999999999999999999999999999999999999999999873 2355554 244678
Q ss_pred CHHHHHHHhh--hhccHHHHHHHHhhCCCChh------hhcc----CcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCC
Q 006275 506 TVLETVAEAA--EDWRIDDIKGLLGRCNFKAD------MLDR----KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573 (652)
Q Consensus 506 tv~e~~~~~~--~~~~~~~~~~~L~~~~l~~~------~~~~----~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~ 573 (652)
|+++|+.++. ....+++++++++..++... -.|. ...+||||||||+||||||+++|+|||||||||+
T Consensus 1168 TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSa 1247 (1321)
T 4f4c_A 1168 SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSA 1247 (1321)
T ss_dssp EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCcccc
Confidence 9999998763 34567788888888887321 1222 3357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcCC
Q 006275 574 LDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFSP 634 (652)
Q Consensus 574 LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~~ 634 (652)
||+++.+.+++.|++. ++|+|+|+|+++++.+ ||||+||++|+|++ .|++++.++....
T Consensus 1248 LD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE-~Gth~eLl~~~g~ 1308 (1321)
T 4f4c_A 1248 LDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE-KGTHTQLMSEKGA 1308 (1321)
T ss_dssp TTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEE-EECHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhCCcH
Confidence 9999999999999875 4699999999999977 99999999999996 5999998875433
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-76 Score=690.58 Aligned_cols=424 Identities=29% Similarity=0.496 Sum_probs=331.1
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHc-CCCCCCcEEEECCCCceEEEEeccC-ccCC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSNMKIAFLSQEF-EVSM 174 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G-~~~p~~G~i~~~~~~~~i~~v~Q~~-~~~~ 174 (652)
.|...|++++|+++++|+|+||+|++|++++|+||||||||||+++|+| .+ .|. ... ...+++|++|++ ..++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~-~~~~~~~v~q~~~~~~~ 509 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQ-EECRTVYVEHDIDGTHS 509 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCT-TTSCEEETTCCCCCCCT
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccc-cceeEEEEccccccccc
Confidence 4777799999999999999999999999999999999999999999995 22 111 000 123578999875 4556
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (652)
..|+.+|+.... .. . ..++.++++.+|+.....+
T Consensus 510 ~ltv~e~l~~~~-------------------------------------------~~--~-~~~v~~~L~~lgL~~~~~~ 543 (986)
T 2iw3_A 510 DTSVLDFVFESG-------------------------------------------VG--T-KEAIKDKLIEFGFTDEMIA 543 (986)
T ss_dssp TSBHHHHHHTTC-------------------------------------------SS--C-HHHHHHHHHHTTCCHHHHH
T ss_pred CCcHHHHHHHhh-------------------------------------------cC--H-HHHHHHHHHHcCCChhhhc
Confidence 789999874100 00 0 3456678889999656789
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCeE
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~ 334 (652)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++++|.++|++.|+|||+||||++++.++||+|++|++|++
T Consensus 544 ~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 544 MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCee
Confidence 99999999999999999999999999999999999999999999999977889999999999999999999999999998
Q ss_pred EEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhhcccccccceEEec
Q 006275 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRF 414 (652)
Q Consensus 335 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 414 (652)
..+.|+++++...... ...... ... ....+.+
T Consensus 624 v~~~G~~~e~~~~~~~----------------------~~~~~~----------------------l~~----~~~~~~~ 655 (986)
T 2iw3_A 624 RKYKGNFTEFVKKCPA----------------------AKAYEE----------------------LSN----TDLEFKF 655 (986)
T ss_dssp EEEESCHHHHHHHCGG----------------------GGGSSS----------------------TTT----CCCCCCC
T ss_pred ecCCCCHHHHHhhhHH----------------------HHHHHh----------------------hhh----hhhhccc
Confidence 6678998776431100 000000 000 0000111
Q ss_pred CCC------CCCCCcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECce
Q 006275 415 PER------GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (652)
Q Consensus 415 p~~------~~~~~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (652)
|++ ...++++|+++|++++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 656 p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~ 735 (986)
T 2iw3_A 656 PEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 735 (986)
T ss_dssp CCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT
T ss_pred cccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc
Confidence 111 1234678999999999975 67999999999999999999999999999999999999999999999763
Q ss_pred ecccceeccccccc--CCCCCCHHHHHHHh--------------------------------------------------
Q 006275 487 NVLPNYFEQNQAEA--LDLDKTVLETVAEA-------------------------------------------------- 514 (652)
Q Consensus 487 ~~~~~~~~~~~~~~--~~~~~tv~e~~~~~-------------------------------------------------- 514 (652)
...+|+.|+.... .....|+.+++...
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 2233443321100 00111222221100
Q ss_pred ---------------------------------------------------------hhhccHHHHHHHHhhCCCChhh-
Q 006275 515 ---------------------------------------------------------AEDWRIDDIKGLLGRCNFKADM- 536 (652)
Q Consensus 515 ---------------------------------------------------------~~~~~~~~~~~~L~~~~l~~~~- 536 (652)
.......++.+.|+.+|+....
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 0001234578899999996544
Q ss_pred hccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCC
Q 006275 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGS 616 (652)
Q Consensus 537 ~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g 616 (652)
.++++.+|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++++|||+||||++++..+|||+++|++|
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 68899999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred EEEe
Q 006275 617 NLQD 620 (652)
Q Consensus 617 ~i~~ 620 (652)
++..
T Consensus 975 ~Iv~ 978 (986)
T 2iw3_A 975 RMTP 978 (986)
T ss_dssp BCCC
T ss_pred EEEE
Confidence 9864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-75 Score=712.23 Aligned_cols=491 Identities=23% Similarity=0.367 Sum_probs=341.4
Q ss_pred CCceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------
Q 006275 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~---------- 161 (652)
...|+++|++|+|++ .++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 346999999999974 3699999999999999999999999999999999999999999999998542
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
.||||+|+|+++ +.||+||+..+..+. ..+.+.++++.+ .+...+..
T Consensus 465 ~i~~v~Q~~~l~-~~ti~eNi~~g~~~~-----~~~~~~~~~~~~---------------------------~~~~~i~~ 511 (1284)
T 3g5u_A 465 IIGVVSQEPVLF-ATTIAENIRYGREDV-----TMDEIEKAVKEA---------------------------NAYDFIMK 511 (1284)
T ss_dssp HEEEECSSCCCC-SSCHHHHHHHHCSSC-----CHHHHHHHHHHT---------------------------TCHHHHHH
T ss_pred heEEEcCCCccC-CccHHHHHhcCCCCC-----CHHHHHHHHHHh---------------------------CcHHHHHh
Confidence 599999999885 569999997432110 001111111111 01111111
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (652)
+-. |+.+ .....+.+|||||||||+|||||+.+|+|||||||||+||+++.+++.+.|++ .|+|+|+|||+++.+
T Consensus 512 l~~--g~~t-~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 512 LPH--QFDT-LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588 (1284)
T ss_dssp STT--GGGC-CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHH
T ss_pred ccc--cccc-cccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 111 2221 23445789999999999999999999999999999999999999999887743 589999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHHHHHHHHHH---HHHH---------------H------------------------
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWI---ESQY---------------A------------------------ 357 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~---~~~~---------------~------------------------ 357 (652)
.. ||+|++|++|++ .+.|+++++........ ..+. .
T Consensus 589 ~~-~d~i~vl~~G~i-~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1284)
T 3g5u_A 589 RN-ADVIAGFDGGVI-VEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRK 666 (1284)
T ss_dssp TT-CSEEEECSSSCC-CCEECHHHHHHTTSHHHHHHHHTC----------------------------------------
T ss_pred Hc-CCEEEEEECCEE-EEECCHHHHHhCCCHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc
Confidence 65 999999999988 47788777643210000 0000 0
Q ss_pred -------------------------------------------------------------------HHH----------
Q 006275 358 -------------------------------------------------------------------AWE---------- 360 (652)
Q Consensus 358 -------------------------------------------------------------------~~~---------- 360 (652)
.|.
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 746 (1284)
T 3g5u_A 667 SICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQ 746 (1284)
T ss_dssp -----------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred ccccccccccccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHH
Confidence 000
Q ss_pred ----------------------------H-HHHHHHHHHH-HHHHhc--------c-CccccchhH--------------
Q 006275 361 ----------------------------K-QQREIEQTKD-LINRLG--------A-GANSGRASS-------------- 387 (652)
Q Consensus 361 ----------------------------~-~~~~~~~~~~-~~~~l~--------~-~~~~~~~~~-------------- 387 (652)
. ..+...+++. ..+.+. . ...+|....
T Consensus 747 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~ 826 (1284)
T 3g5u_A 747 NSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATG 826 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000000 000000 0 000000000
Q ss_pred -------------------------------------------------------HHHH---------------------
Q 006275 388 -------------------------------------------------------AEKK--------------------- 391 (652)
Q Consensus 388 -------------------------------------------------------~~~~--------------------- 391 (652)
..+.
T Consensus 827 ~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~ 906 (1284)
T 3g5u_A 827 SRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSL 906 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000
Q ss_pred --------------------------------------------------------------------------------
Q 006275 392 -------------------------------------------------------------------------------- 391 (652)
Q Consensus 392 -------------------------------------------------------------------------------- 391 (652)
T Consensus 907 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 986 (1284)
T 3g5u_A 907 TREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQ 986 (1284)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------HHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCCe---eeeeceEEEEEcCeEEE
Q 006275 392 --------------LERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTA 454 (652)
Q Consensus 392 --------------l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~---~vl~~isl~i~~Ge~~~ 454 (652)
.+++.+.-. .++...... ..+...++..+.|+++||+++|+++ ++|+|+||+|++||++|
T Consensus 987 ~~~~~~~~~~~~~a~~ri~~~l~-~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ 1063 (1284)
T 3g5u_A 987 VSSFAPDYAKATVSASHIIRIIE-KTPEIDSYS--TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLA 1063 (1284)
T ss_dssp HTSSSCCSTHHHHHHHHHHHHHH-SCCSSSSCC--SSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCCcccccc--cccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEE
Confidence 000000000 000000000 0000112234569999999999753 69999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cceecccccccCCCCCCHHHHHHHhhh--hccHHH
Q 006275 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVAEAAE--DWRIDD 522 (652)
Q Consensus 455 i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~~~~~~~~~~~~~tv~e~~~~~~~--~~~~~~ 522 (652)
|+||||||||||+++|+|+++|++|+|.++|.++. .++++|+. ..++.|+.||+..+.. ....++
T Consensus 1064 ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~---~l~~~ti~eNi~~~~~~~~~~~~~ 1140 (1284)
T 3g5u_A 1064 LVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP---ILFDCSIAENIAYGDNSRVVSYEE 1140 (1284)
T ss_dssp EECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSC---CCCSSBHHHHHTCCCSSCCCCHHH
T ss_pred EECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCC---ccccccHHHHHhccCCCCCCCHHH
Confidence 99999999999999999999999999999998763 24566653 3457899999987542 233455
Q ss_pred HHHHHhhCCCChhhh-----------ccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q 006275 523 IKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-- 589 (652)
Q Consensus 523 ~~~~L~~~~l~~~~~-----------~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-- 589 (652)
+.+.++..++. +.. .....+|||||||||+|||||+++|+||||||||++||+.+++.+++.|++.
T Consensus 1141 i~~~~~~~~~~-~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~ 1219 (1284)
T 3g5u_A 1141 IVRAAKEANIH-QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219 (1284)
T ss_dssp HHHHHHHHTCH-HHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCcH-HHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCC
Confidence 55555555542 222 2234689999999999999999999999999999999999999999999875
Q ss_pred CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 590 KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 590 ~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
+.|||+||||++++.. ||||++|++|++++ .|++++.++..
T Consensus 1220 ~~tvi~isH~l~~i~~-~dri~vl~~G~i~~-~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1220 GRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE-HGTHQQLLAQK 1260 (1284)
T ss_dssp SSCEEEECSCTTGGGS-CSEEEEEETBEEEE-EECHHHHHHSC
T ss_pred CCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHhCC
Confidence 4599999999999965 99999999999985 58888877643
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-75 Score=660.33 Aligned_cols=432 Identities=24% Similarity=0.317 Sum_probs=327.4
Q ss_pred eEE-EeEEEEeCCe-eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE---------EECCC-------
Q 006275 98 VKL-ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKS------- 159 (652)
Q Consensus 98 i~v-~~ls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i---------~~~~~------- 159 (652)
.++ +|++|+|+++ .+++++| +|++||+++|+||||||||||+|+|+|+++|++|++ .+.|.
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 6899999876 4899999 999999999999999999999999999999999985 23332
Q ss_pred -----CceEEEEeccCccCC---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCC
Q 006275 160 -----NMKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (652)
Q Consensus 160 -----~~~i~~v~Q~~~~~~---~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (652)
...+++++|.....+ ..|+.+++...
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---------------------------------------------- 133 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---------------------------------------------- 133 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----------------------------------------------
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----------------------------------------------
Confidence 135788888754322 13666654200
Q ss_pred hhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCe
Q 006275 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVP 308 (652)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~t 308 (652)
....++.++++.+|+. ...++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|+ +.|+|
T Consensus 134 --~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~t 210 (538)
T 1yqt_A 134 --DETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKS 210 (538)
T ss_dssp --CSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred --hHHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 0012355678889996 57899999999999999999999999999999999999999999999888774 35899
Q ss_pred EEEEecCHHHHHhhcCeEEEEcCCeE--EEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchh
Q 006275 309 MVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (652)
Q Consensus 309 vIivsHd~~~l~~~~d~ii~l~~G~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (652)
||+||||++++..+||+|++|+++.. ..+...+..-. .+ ......... ..
T Consensus 211 vi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~---~~--- 262 (538)
T 1yqt_A 211 VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN-------------------GI---NEFLRGYLK---DE--- 262 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH-------------------HH---HHHHHTEET---TT---
T ss_pred EEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHH-------------------HH---HHHhhhccc---hh---
Confidence 99999999999999999999985421 12222222100 00 000000000 00
Q ss_pred HHHHHHHHHHHHhhhcccccccceEEecCCCC--CCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHH
Q 006275 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (652)
Q Consensus 387 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKS 464 (652)
..... .....+.+++.. ..++.+++++|+++.|++. .|+++||+|++||++||+||||||||
T Consensus 263 -------------~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKS 326 (538)
T 1yqt_A 263 -------------NVRFR--PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKT 326 (538)
T ss_dssp -------------TEECS--SSCCCCCCSSGGGSSCCCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHH
T ss_pred -------------hhccc--ccccccccCCcccccCCCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHH
Confidence 00000 000001111111 1345689999999999764 68999999999999999999999999
Q ss_pred HHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHh-hhh-ccHHHHHHHHhhCCCChhhhccCcC
Q 006275 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKADMLDRKVS 542 (652)
Q Consensus 465 TLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~-~~~-~~~~~~~~~L~~~~l~~~~~~~~~~ 542 (652)
||+++|+|+++|++|+|.+. ...+|++|+.. ..+..||.+++... ... .....+.++++.+++. +..++++.
T Consensus 327 TLlk~l~Gl~~p~~G~i~~~---~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~ 400 (538)
T 1yqt_A 327 TFVKMLAGVEEPTEGKIEWD---LTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVN 400 (538)
T ss_dssp HHHHHHHTSSCCSBCCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGG
T ss_pred HHHHHHhCCCCCCCeEEEEC---ceEEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChh
Confidence 99999999999999999862 34567777642 34678998887653 111 2234578899999995 67899999
Q ss_pred CCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeC--C
Q 006275 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG--S 616 (652)
Q Consensus 543 ~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~--g 616 (652)
+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |
T Consensus 401 ~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~ 480 (538)
T 1yqt_A 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPG 480 (538)
T ss_dssp GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999999999998764 57999999999999999999999985 5
Q ss_pred EEEeecCChhhHhh
Q 006275 617 NLQDYAGDYNVCFT 630 (652)
Q Consensus 617 ~i~~~~g~~~~~~~ 630 (652)
++. ..|++++...
T Consensus 481 ~~~-~~g~~~~~~~ 493 (538)
T 1yqt_A 481 KYG-RALPPMGMRE 493 (538)
T ss_dssp TEE-EECCCEEHHH
T ss_pred eEe-ecCCHHHHHh
Confidence 554 3577766543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-75 Score=665.96 Aligned_cols=434 Identities=24% Similarity=0.320 Sum_probs=331.0
Q ss_pred CceEE--------EeEEEEeCCe-eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE---------EEC
Q 006275 96 SGVKL--------ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKA 157 (652)
Q Consensus 96 ~~i~v--------~~ls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i---------~~~ 157 (652)
.+|++ +|++++|++. .+|+++| +|++||+++|+||||||||||+++|+|+++|++|++ .+.
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred ceEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 35888 8999999876 4999999 999999999999999999999999999999999985 233
Q ss_pred CC------------CceEEEEeccCccCC---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHH
Q 006275 158 KS------------NMKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDL 222 (652)
Q Consensus 158 ~~------------~~~i~~v~Q~~~~~~---~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (652)
|. ...+++++|.....+ ..||.||+...
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------------------------------------- 203 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------------------------------------- 203 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-------------------------------------
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-------------------------------------
Confidence 32 124778888643222 23777765210
Q ss_pred HHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 006275 223 LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL 302 (652)
Q Consensus 223 ~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L 302 (652)
....++.++++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++.++.++|
T Consensus 204 -----------~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L 271 (607)
T 3bk7_A 204 -----------DEVGKFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 271 (607)
T ss_dssp -----------CCSSCHHHHHHHTTCT-TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHcCCC-chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0012345678888996 6789999999999999999999999999999999999999999999988877
Q ss_pred cc---CCCeEEEEecCHHHHHhhcCeEEEEcCCeE--EEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006275 303 GK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLG 377 (652)
Q Consensus 303 ~~---~g~tvIivsHd~~~l~~~~d~ii~l~~G~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (652)
++ .|+|||+||||++++..+||+|++|.++.. ..+...+... . .+ ...+....
T Consensus 272 ~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~----~---------------~i---~~~~~~~~ 329 (607)
T 3bk7_A 272 RRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTR----N---------------GI---NEFLQGYL 329 (607)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHH----H---------------HH---HHHHHTEE
T ss_pred HHHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHH----H---------------HH---HHHHhhcc
Confidence 53 489999999999999999999999986421 1122222110 0 00 00010000
Q ss_pred cCccccchhHHHHHHHHHHHHhhhcccccccceEEecCCCC--CCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEE
Q 006275 378 AGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAI 455 (652)
Q Consensus 378 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i 455 (652)
.. . ..... .....+..+++. ..+..+++++|+++.|++. .|+++||+|++||++||
T Consensus 330 ~~-~------------------~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i 387 (607)
T 3bk7_A 330 KD-E------------------NVRFR--PYEIRFTKLSERVDVERETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGI 387 (607)
T ss_dssp TT-T------------------TEECC--SSCCCCCCSTTSCCCCCCEEEEECCEEEECSSC-EEEECCEEEETTCEEEE
T ss_pred hh-h------------------hhhcc--ccccccccCCCcccccCceEEEEeceEEEecce-EEEecccccCCCCEEEE
Confidence 00 0 00000 000011111111 1345689999999999764 68999999999999999
Q ss_pred EcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHh-hhh-ccHHHHHHHHhhCCCC
Q 006275 456 IGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFK 533 (652)
Q Consensus 456 ~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~-~~~-~~~~~~~~~L~~~~l~ 533 (652)
+||||||||||+++|+|+++|++|+|.+. ...+|++|+. ...+..||.+++... ... .....+.++++.+++.
T Consensus 388 ~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYI--KAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSC--CCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCceEEEEe---eEEEEEecCc--cCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999863 3456777764 334678998887654 111 1234567889999995
Q ss_pred hhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccE
Q 006275 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNR 609 (652)
Q Consensus 534 ~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~dr 609 (652)
+..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|||
T Consensus 463 -~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adr 541 (607)
T 3bk7_A 463 -DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 541 (607)
T ss_dssp -TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred -hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 6789999999999999999999999999999999999999999999999999864 56999999999999999999
Q ss_pred EEEEeC--CEEEeecCChhhHhh
Q 006275 610 VVEVKG--SNLQDYAGDYNVCFT 630 (652)
Q Consensus 610 vi~l~~--g~i~~~~g~~~~~~~ 630 (652)
|++|++ |++. ..|++++...
T Consensus 542 v~vl~~~~g~~~-~~g~p~~~~~ 563 (607)
T 3bk7_A 542 LIVFEGEPGRHG-RALPPMGMRE 563 (607)
T ss_dssp EEEEEEETTTEE-EECCCEEHHH
T ss_pred EEEEcCCcceEE-ecCCHHHHHh
Confidence 999985 5554 3577776554
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-71 Score=624.84 Aligned_cols=420 Identities=24% Similarity=0.309 Sum_probs=303.9
Q ss_pred eEEEEeCCeeeeeeeeEE-EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE-----------EECCCC---------
Q 006275 102 NISKSYKGVTVLKDVTWE-VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-----------IKAKSN--------- 160 (652)
Q Consensus 102 ~ls~~y~~~~vL~~vsl~-i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i-----------~~~~~~--------- 160 (652)
+.+.+|+.+. ++-..|. +++||++||+||||||||||+|+|+|+++|++|+| .+.|..
T Consensus 4 ~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 4677886542 3334453 45899999999999999999999999999999988 333321
Q ss_pred ---ceEEEEeccCccC---CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhc
Q 006275 161 ---MKIAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~---~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (652)
..+....|..... ...++.+++... .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~------------------------------------------------~ 114 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKI------------------------------------------------D 114 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHHH------------------------------------------------C
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhcc------------------------------------------------h
Confidence 1234444432111 223554432100 0
Q ss_pred HHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
...++.++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .|+|||+|
T Consensus 115 ~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~v 193 (538)
T 3ozx_A 115 ERGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193 (538)
T ss_dssp CSSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred hHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 012345677888885 678999999999999999999999999999999999999999999999887643 38999999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEE--EecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 390 (652)
|||++++..+||+|+++++|... .+...+..- . . ....+........ .+.
T Consensus 194 sHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~~----~---------------~---~~~~~~g~~~~~~-~~~----- 245 (538)
T 3ozx_A 194 DHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAAR----V---------------G---INNFLKGYLPAEN-MKI----- 245 (538)
T ss_dssp CSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH----H---------------H---HHHHHHTEETTTT-EEC-----
T ss_pred EeChHHHHhhCCEEEEecCCcccccccchhhhHH----H---------------H---HHHHHhhhchhhh-hhc-----
Confidence 99999999999999999864321 112222100 0 0 0000110000000 000
Q ss_pred HHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHH
Q 006275 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (652)
Q Consensus 391 ~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l 470 (652)
+ ......... ...........+.+++++|+++.|++ ..|..+||+|++||++||+||||||||||+++|
T Consensus 246 -----r---~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l 314 (538)
T 3ozx_A 246 -----R---PDEIKFMLK--EVSDLDLSKDLKTKMKWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARIL 314 (538)
T ss_dssp -----S---SSCCCCSCC------------CCEEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHH
T ss_pred -----c---chhhhcccc--ccccccccccccceEEEcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHH
Confidence 0 000000000 00000001234567999999999976 457888999999999999999999999999999
Q ss_pred hCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhh---ccHHHHHHHHhhCCCChhhhccCcCCCCHH
Q 006275 471 MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (652)
Q Consensus 471 ~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG 547 (652)
+|+++|++|+|.+++.. .++++|.. ...+..||.+++...... .....+.++++.+++. +..++++.+||||
T Consensus 315 ~Gl~~p~~G~i~~~~~~--i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGG 389 (538)
T 3ozx_A 315 VGEITADEGSVTPEKQI--LSYKPQRI--FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSGG 389 (538)
T ss_dssp TTSSCCSBCCEESSCCC--EEEECSSC--CCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHH
T ss_pred hCCCCCCCcEEEECCee--eEeechhc--ccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCChhhCCHH
Confidence 99999999999988754 34666543 234578999998764321 1223467889999994 6789999999999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeC
Q 006275 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG 615 (652)
Q Consensus 548 qrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~ 615 (652)
|||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++
T Consensus 390 q~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999998764 56999999999999999999999986
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-69 Score=613.41 Aligned_cols=455 Identities=22% Similarity=0.331 Sum_probs=304.9
Q ss_pred eEEEEeCCee-eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-eEEEEeccCccCCCCCHH
Q 006275 102 NISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEFEVSMSRTVR 179 (652)
Q Consensus 102 ~ls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~-~i~~v~Q~~~~~~~~Tv~ 179 (652)
|++++|+... .|++++ .+++||++||+||||||||||+|+|+|+++|++|+|....... .+++ +....+.
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~-------~~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY-------FRGSELQ 153 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHH-------TTTSTHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhhe-------ecChhhh
Confidence 4688887653 677776 6899999999999999999999999999999999873110000 0000 0000000
Q ss_pred HHHHHhhHHHHHH---HHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 180 EEFMSAFKEEMEI---AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 180 e~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
..+.......... ....+.+..... .....+..++ .. .......++.++++.+|+. ...+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~l-------~~----~~~~~~~~~~~~l~~~gl~-~~~~~~ 218 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIPRAIK---GPVQKVGELL-------KL----RMEKSPEDVKRYIKILQLE-NVLKRD 218 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHHHHCS---SSSSHHHHHH-------HH----HCCSCHHHHHHHHHHHTCT-GGGGSC
T ss_pred hhhhHHHHHhhhhhhchhhhhhhhhhhc---chhhHHHHHH-------hh----hhhhHHHHHHHHHHHcCCc-chhCCC
Confidence 0000000000000 000000000000 0000000000 00 0011235678889999996 678999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEcCCe
Q 006275 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l~~G~ 333 (652)
+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|+|||+||||++++..+||+|++|.++.
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999999999999888764 458999999999999999999999998654
Q ss_pred EE--EecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhhcccccccceE
Q 006275 334 SR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411 (652)
Q Consensus 334 ~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 411 (652)
.. ....+++. ... . ...+...... . ... .......
T Consensus 299 ~~~~~~~~~~~~-~~~------------------~---~~~~~~~~~~------------------~-~~~--~~~~~~~ 335 (608)
T 3j16_B 299 SVYGVVTLPASV-REG------------------I---NIFLDGHIPA------------------E-NLR--FRTEALQ 335 (608)
T ss_dssp TTEEEECCCEEH-HHH------------------H---HHHHHTEETT------------------T-TEE--CSSSCCC
T ss_pred cccceecCchhH-HHH------------------H---HHhhccccch------------------h-hhc--ccccccc
Confidence 21 01111110 000 0 0000000000 0 000 0000000
Q ss_pred EecCCCCCCCCcEEEEEeeeeEeCC-eeeeeceEEEEEcC-----eEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECc
Q 006275 412 IRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERG-----EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (652)
Q Consensus 412 ~~~p~~~~~~~~~i~~~~v~~~y~~-~~vl~~isl~i~~G-----e~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (652)
+.... ......+...+++++|++ ..+++++||++.+| |++||+||||||||||+++|+|+++|++|+.. .
T Consensus 336 ~~~~~--~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~- 411 (608)
T 3j16_B 336 FRIAD--ATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-P- 411 (608)
T ss_dssp CCCSS--SSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-C-
T ss_pred ccccc--cccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-c-
Confidence 00000 000111222567888976 46899999999999 78999999999999999999999999999741 1
Q ss_pred eecccceecccccccCCCCCCHHHHHHHhhh--hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
....++++|.. ...+..|+.+++..... ......+.++++.+++. +..++++.+|||||||||+|||||+.+|+
T Consensus 412 -~~~i~~~~q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~iAraL~~~p~ 487 (608)
T 3j16_B 412 -KLNVSMKPQKI--APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLALGIPAD 487 (608)
T ss_dssp -SCCEEEECSSC--CCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHHHHHTTSCCS
T ss_pred -CCcEEEecccc--cccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 12235566543 23456799998765322 12334567788999985 67899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeC--CEEEeecCChhhHhhh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG--SNLQDYAGDYNVCFTS 631 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~--g~i~~~~g~~~~~~~~ 631 (652)
||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |++. ..|++++.+..
T Consensus 488 lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~g~p~~~~~~ 560 (608)
T 3j16_B 488 IYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HARAPESLLTG 560 (608)
T ss_dssp EEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-ECCCCEEHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEE-ecCChHHHhhh
Confidence 99999999999999999999988764 57999999999999999999999986 7775 56887766543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-68 Score=613.55 Aligned_cols=434 Identities=21% Similarity=0.286 Sum_probs=287.7
Q ss_pred CeeeeeeeeEEEECCCEEEEECCCCccHHHHH---------------------HHHHcCCCCCCcE-------EEECCCC
Q 006275 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQL---------------------RIIAGQEEPDSGN-------VIKAKSN 160 (652)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl---------------------~~L~G~~~p~~G~-------i~~~~~~ 160 (652)
...+|+||||+|++||++||+||||||||||+ +++.|+..|+.|. |.+++..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 8999999998554 4444321
Q ss_pred ------ceEEEEeccCcc-------------------CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHh
Q 006275 161 ------MKIAFLSQEFEV-------------------SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215 (652)
Q Consensus 161 ------~~i~~v~Q~~~~-------------------~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (652)
..++|++|.+.. +..+||.||+....... .... .
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~--~~~~-------------~------ 168 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLE--LTEK-------------E------ 168 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccc--cchh-------------h------
Confidence 234555554322 13446666653210000 0000 0
Q ss_pred hHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHH
Q 006275 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLD 293 (652)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~--iLLLDEPts~LD~~ 293 (652)
.........++.+. ..+++.+|+.....++++.+|||||||||+|||||+.+|+ +|||||||+|||+.
T Consensus 169 ---------~~~~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 169 ---------AQIARLILREIRDR-LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp -------------------CHHH-HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ---------hHHHHHHHHHHHHH-HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 00000000011112 2458888997545789999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEE------cCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHH
Q 006275 294 TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364 (652)
Q Consensus 294 ~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (652)
++.++.++|+ +.|.|||+||||++++. .||+|++| ++|++ .+.|+++++.......
T Consensus 239 ~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i-~~~g~~~~~~~~~~~~------------- 303 (670)
T 3ux8_A 239 DNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNSL------------- 303 (670)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSE-EEEECHHHHHTCTTCH-------------
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccccccCCEE-EEecCHHHHhcCchhH-------------
Confidence 9999988764 46899999999999875 59999999 77776 5778766543211000
Q ss_pred HHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhhcccccccceEEecCC-CCCCCCcEEEEEeeeeEeCCeeeeece
Q 006275 365 EIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE-RGRSGRSVVTIKNLEFGYEDRLLFNRA 443 (652)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~i~~~~v~~~y~~~~vl~~i 443 (652)
... .+.. ... ...+. ........+++.+.. ..+|+||
T Consensus 304 ----~~~---~~~~-----------------------~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~L~~v 341 (670)
T 3ux8_A 304 ----TGQ---YLSG-----------------------KKF-------IPIPAERRRPDGRWLEVVGAR-----EHNLKNV 341 (670)
T ss_dssp ----HHH---HHTT-----------------------SSC-------CCCCSSCCCCCSCEEEEEEEC-----STTCCSE
T ss_pred ----HHH---Hhcc-----------------------ccc-------cccccccccccccceeecCcc-----ccccccc
Confidence 000 0000 000 00010 011123345555543 4589999
Q ss_pred EEEEEcCeEEEEEcCCCCcHHHHHHHHh----------------------CCCCCCeeEEEECceeccc----------c
Q 006275 444 NLTIERGEKTAIIGPNGCGKSTLLKLIM----------------------GLEKPRGGEVLLGEHNVLP----------N 491 (652)
Q Consensus 444 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~----------------------g~~~p~~G~i~~~g~~~~~----------~ 491 (652)
||+|++||++||+||||||||||+++|+ |+..+ .|.|.+++.++.. +
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 420 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTG 420 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHT
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhh
Confidence 9999999999999999999999998754 33333 3567776654310 0
Q ss_pred eecc-----------------------c------------------------------------------------cccc
Q 006275 492 YFEQ-----------------------N------------------------------------------------QAEA 500 (652)
Q Consensus 492 ~~~~-----------------------~------------------------------------------------~~~~ 500 (652)
.+.+ + +...
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (670)
T 3ux8_A 421 VFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIA 500 (670)
T ss_dssp HHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHH
T ss_pred hhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHH
Confidence 0000 0 0000
Q ss_pred CCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHH
Q 006275 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIP 577 (652)
Q Consensus 501 ~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p---~lLlLDEPt~~LD~~ 577 (652)
....+|+.+|+.+........+..+.+..+++.....++++.+|||||||||+|||||+.+| +||||||||+|||+.
T Consensus 501 ~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~ 580 (670)
T 3ux8_A 501 EVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD 580 (670)
T ss_dssp HHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHH
T ss_pred HHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHH
Confidence 01146788888765433333456778888998644568999999999999999999999887 599999999999999
Q ss_pred HHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEE------eCCEEEeecCChhhHhhhcC
Q 006275 578 SKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNVCFTSFS 633 (652)
Q Consensus 578 ~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l------~~g~i~~~~g~~~~~~~~~~ 633 (652)
+...+.++|+++ +.|||+||||++++. .||||++| ++|+|+ ..|++++..+...
T Consensus 581 ~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~-~~g~~~~~~~~~~ 643 (670)
T 3ux8_A 581 DIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVAEVKE 643 (670)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEE-EEECHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEE-EecCHHHHHhCCc
Confidence 999999998765 569999999999885 69999999 899998 5688888765433
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-51 Score=477.94 Aligned_cols=339 Identities=22% Similarity=0.257 Sum_probs=250.6
Q ss_pred hcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHH---ccCCC
Q 006275 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYL---GKQDV 307 (652)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L---~~~g~ 307 (652)
+++..++. .+..+|+.....++++.+|||||||||+||++|+.+|+ +|||||||+|||+...++|.++| ++.|.
T Consensus 354 ~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~ 432 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGN 432 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 35666776 57899996434799999999999999999999999994 99999999999999999998865 56799
Q ss_pred eEEEEecCHHHHHhhcCeEEEE------cCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 006275 308 PMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN 381 (652)
Q Consensus 308 tvIivsHd~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (652)
|||+||||++++ ..||+|++| ++|.+ .+.|+++++....... ... .+.+.
T Consensus 433 TVIvVeHdl~~l-~~aD~ii~lgpgaG~~~G~i-v~~g~~~~~~~~~~~~-----------------~~~---~l~~~-- 488 (842)
T 2vf7_A 433 SLFVVEHDLDVI-RRADWLVDVGPEAGEKGGEI-LYSGPPEGLKHVPESQ-----------------TGQ---YLFAD-- 488 (842)
T ss_dssp EEEEECCCHHHH-TTCSEEEEECSSSGGGCCSE-EEEECGGGGGGCTTCH-----------------HHH---HHHTC--
T ss_pred EEEEEcCCHHHH-HhCCEEEEeCCCcccCCCEE-EEecCHHHHHhchHHH-----------------HHH---Hhhhc--
Confidence 999999999987 579999999 45655 6889988764321000 000 00000
Q ss_pred ccchhHHHHHHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCC
Q 006275 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (652)
Q Consensus 382 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGs 461 (652)
...+ +.....+..+|+++|+++ ..|+||||+|++||++||+|+|||
T Consensus 489 -------------------~~~~----------~~~~~~~~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGS 534 (842)
T 2vf7_A 489 -------------------RHTE----------PHTPREPAGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGS 534 (842)
T ss_dssp -------------------CCCC----------CCCCCCCSCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTS
T ss_pred -------------------cccc----------ccccCCCCceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCc
Confidence 0000 000112356799999975 269999999999999999999999
Q ss_pred cHHHHHHH-HhCCC-------CC------------------Cee-------EEEECceecc--cc---------------
Q 006275 462 GKSTLLKL-IMGLE-------KP------------------RGG-------EVLLGEHNVL--PN--------------- 491 (652)
Q Consensus 462 GKSTLl~~-l~g~~-------~p------------------~~G-------~i~~~g~~~~--~~--------------- 491 (652)
|||||++. |+|++ +| .+| .|.+++.++. +.
T Consensus 535 GKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~ 614 (842)
T 2vf7_A 535 GKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRK 614 (842)
T ss_dssp SHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHH
Confidence 99999996 66543 23 466 6778776541 00
Q ss_pred ----------------eeccccc----------------ccC------------------------CCCCCHHHH-----
Q 006275 492 ----------------YFEQNQA----------------EAL------------------------DLDKTVLET----- 510 (652)
Q Consensus 492 ----------------~~~~~~~----------------~~~------------------------~~~~tv~e~----- 510 (652)
.|..|.. ..+ ....++.|+
T Consensus 615 ~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv 694 (842)
T 2vf7_A 615 LFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTV 694 (842)
T ss_dssp HHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBH
T ss_pred HHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccH
Confidence 0111100 000 012344444
Q ss_pred ---HHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHH
Q 006275 511 ---VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP---STLLVLDEPTNHLDIPSKEMLEE 584 (652)
Q Consensus 511 ---~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~---p~lLlLDEPt~~LD~~~~~~l~~ 584 (652)
+.+.........+.++|+.+|+.....++++.+|||||||||+|||+|+.+ |+||||||||+|||+.++..+.+
T Consensus 695 ~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~ 774 (842)
T 2vf7_A 695 DEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR 774 (842)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 333222122345778999999964346899999999999999999999996 79999999999999999999999
Q ss_pred HHHhc---CceEEEEecCHHHHHhhccEEEEE------eCCEEEeecCChhhHhhhc
Q 006275 585 AISEY---KGTVITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 585 ~l~~~---~~tvi~vsHd~~~i~~~~drvi~l------~~g~i~~~~g~~~~~~~~~ 632 (652)
+|+++ +.|||+||||++++ ..||||++| ++|+|+ ..|+++++.+..
T Consensus 775 lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~~~~ 829 (842)
T 2vf7_A 775 QLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVAQAA 829 (842)
T ss_dssp HHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHTTCT
T ss_pred HHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHHhCc
Confidence 98754 57999999999999 679999999 689987 468888876543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=474.72 Aligned_cols=335 Identities=21% Similarity=0.297 Sum_probs=244.2
Q ss_pred HHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEec
Q 006275 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (652)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsH 314 (652)
.+.|..+|+.....++++.+|||||||||+|||||+++|+ +|||||||+|||+...++|.++|+ +.|.|||+|||
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4567889996445789999999999999999999999887 999999999999999999988864 46899999999
Q ss_pred CHHHHHhhcCeEEEE------cCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHH
Q 006275 315 DRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSA 388 (652)
Q Consensus 315 d~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (652)
|++++.. ||+|++| ++|++ .+.|+++++....... ..... +.+
T Consensus 525 d~~~~~~-aD~ii~lgpgag~~~G~i-v~~G~~~e~~~~~~~~----------------~~~~~---l~~---------- 573 (916)
T 3pih_A 525 DEEVIRN-ADHIIDIGPGGGTNGGRV-VFQGTVDELLKNPDSS----------------LTGEY---LSG---------- 573 (916)
T ss_dssp CHHHHHT-CSEEEEEESSSGGGCSEE-EEEECHHHHHHSCTTC----------------HHHHH---HHS----------
T ss_pred CHHHHHh-CCEEEEEcCCcccCCCEE-EEeechhhhhcCchhc----------------chhhh---hhc----------
Confidence 9999865 9999999 66776 6889987764321000 00000 000
Q ss_pred HHHHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHH-
Q 006275 389 EKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL- 467 (652)
Q Consensus 389 ~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl- 467 (652)
... +..+.........+++++++ ...|+||||+|++|++++|+|+||||||||+
T Consensus 574 -------------~~~-------~~~~~~~~~~~~~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 574 -------------KRK-------ITVNKTRRLPYASLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp -------------SSC-------CCCCSSCCCCSSEEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHHH
T ss_pred -------------ccc-------cccccccccccceEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhHH
Confidence 000 00011111123347777764 3469999999999999999999999999997
Q ss_pred --------HHHhCCCCCC------ee------EEEECceecc--c-----------------------------------
Q 006275 468 --------KLIMGLEKPR------GG------EVLLGEHNVL--P----------------------------------- 490 (652)
Q Consensus 468 --------~~l~g~~~p~------~G------~i~~~g~~~~--~----------------------------------- 490 (652)
+++.+...+. +| .+.++..++. +
T Consensus 629 ~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs 708 (916)
T 3pih_A 629 ETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFS 708 (916)
T ss_dssp HTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGC
T ss_pred HHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccchHHHhccccccccc
Confidence 4444443332 33 2333332210 0
Q ss_pred --------------ceeccccc------------------------------ccCCCCCCHHHHHHHhhhhccHHHHHHH
Q 006275 491 --------------NYFEQNQA------------------------------EALDLDKTVLETVAEAAEDWRIDDIKGL 526 (652)
Q Consensus 491 --------------~~~~~~~~------------------------------~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 526 (652)
++..+... ......+|+.+++.+........+..+.
T Consensus 709 ~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~ 788 (916)
T 3pih_A 709 FNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQV 788 (916)
T ss_dssp TTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHH
T ss_pred ccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHH
Confidence 00000000 0000135677777665443344567789
Q ss_pred HhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCH
Q 006275 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDR 600 (652)
Q Consensus 527 L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~ 600 (652)
|..+|+.....++++.+|||||||||+|||||+++| +||||||||+|||+.+++.|.++|+++ +.|||+||||+
T Consensus 789 L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL 868 (916)
T 3pih_A 789 LHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL 868 (916)
T ss_dssp HHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999654568899999999999999999999875 799999999999999999999998764 56999999999
Q ss_pred HHHHhhccEEEEE------eCCEEEeecCChhhHhhhc
Q 006275 601 YFVKQIVNRVVEV------KGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 601 ~~i~~~~drvi~l------~~g~i~~~~g~~~~~~~~~ 632 (652)
+++.. ||+|++| ++|+|+ ..|++++..+..
T Consensus 869 ~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~~~~ 904 (916)
T 3pih_A 869 DVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIAKNP 904 (916)
T ss_dssp HHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHHSCT
T ss_pred HHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHHhCC
Confidence 99865 9999999 889998 569999887654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-50 Score=467.96 Aligned_cols=338 Identities=20% Similarity=0.266 Sum_probs=246.7
Q ss_pred cHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHH---ccCCCe
Q 006275 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVP 308 (652)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L---~~~g~t 308 (652)
++..++ +.|..+||....+++++.+|||||||||+||++|..+| ++|||||||+|||+...++|.+.| ++.|.|
T Consensus 480 ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 558 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 558 (972)
T ss_dssp HHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 445565 45899999643479999999999999999999999985 999999999999999999998775 467999
Q ss_pred EEEEecCHHHHHhhcCeEEEE------cCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 006275 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (652)
Q Consensus 309 vIivsHd~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (652)
||+|+||++++. .||+|++| ++|.+ ++.|+++++....... ... .+.+
T Consensus 559 VIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~i-v~~G~~~e~~~~~~sl-----------------t~~---~l~g---- 612 (972)
T 2r6f_A 559 LIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNSL-----------------TGQ---YLSG---- 612 (972)
T ss_dssp EEEECCCHHHHH-SCSEEEEECSSSGGGCCSE-EEEECTTTTTTCTTCT-----------------THH---HHHT----
T ss_pred EEEEecCHHHHH-hCCEEEEeCCCccCCCCEE-EEecCHHHHHhhhHHH-----------------HHH---HhcC----
Confidence 999999999985 69999999 45655 6889887654210000 000 0000
Q ss_pred cchhHHHHHHHHHHHHhhhcccccccceEEecCCCC-CCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCC
Q 006275 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (652)
Q Consensus 383 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGs 461 (652)
... +..|... .+....|++++++. ..|+||||+|+.||++||+|+|||
T Consensus 613 -------------------~~~-------~~~~~~~~~~~~~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGS 661 (972)
T 2r6f_A 613 -------------------KKF-------IPIPAERRRPDGRWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGS 661 (972)
T ss_dssp -------------------SSC-------CCCCSSCCCCCSCEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTS
T ss_pred -------------------Ccc-------ccCccccccccceEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCC
Confidence 000 0001111 12245799999973 369999999999999999999999
Q ss_pred cHHHHHHHHh-CCC-------CCCee-------------EEEECceecc--c---------------------------c
Q 006275 462 GKSTLLKLIM-GLE-------KPRGG-------------EVLLGEHNVL--P---------------------------N 491 (652)
Q Consensus 462 GKSTLl~~l~-g~~-------~p~~G-------------~i~~~g~~~~--~---------------------------~ 491 (652)
|||||+++|+ |.+ .+..| .|.+++.++. + +
T Consensus 662 GKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~G 741 (972)
T 2r6f_A 662 GKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRG 741 (972)
T ss_dssp SHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhc
Confidence 9999999853 221 11223 3667765541 0 0
Q ss_pred eecccccc--------------------cCC--------------------------------CCCCHHHHHHHhhhhcc
Q 006275 492 YFEQNQAE--------------------ALD--------------------------------LDKTVLETVAEAAEDWR 519 (652)
Q Consensus 492 ~~~~~~~~--------------------~~~--------------------------------~~~tv~e~~~~~~~~~~ 519 (652)
|..+.... .+. ..+|+.+++.+......
T Consensus 742 y~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~ 821 (972)
T 2r6f_A 742 YKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPK 821 (972)
T ss_dssp CCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHH
T ss_pred ccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchh
Confidence 11110000 000 13456666654322222
Q ss_pred HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceE
Q 006275 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTV 593 (652)
Q Consensus 520 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv 593 (652)
..+..++|+.+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..+.++|+++ +.||
T Consensus 822 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TV 901 (972)
T 2r6f_A 822 IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV 901 (972)
T ss_dssp HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 3345688999999643678999999999999999999999865 999999999999999999999998754 5699
Q ss_pred EEEecCHHHHHhhccEEEEE------eCCEEEeecCChhhHhhh
Q 006275 594 ITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 594 i~vsHd~~~i~~~~drvi~l------~~g~i~~~~g~~~~~~~~ 631 (652)
|+||||++++. .||||++| ++|+++ ..|+++++...
T Consensus 902 IvisHdl~~i~-~aDrIivL~p~gG~~~G~Iv-~~g~~~el~~~ 943 (972)
T 2r6f_A 902 LVIEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVAEV 943 (972)
T ss_dssp EEECCCHHHHT-TCSEEEEECSSSTTSCCSEE-EEESHHHHHTC
T ss_pred EEEcCCHHHHH-hCCEEEEEcCCCCCCCCEEE-EecCHHHHHhC
Confidence 99999999984 79999999 689987 46888887654
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-47 Score=404.45 Aligned_cols=211 Identities=25% Similarity=0.421 Sum_probs=182.2
Q ss_pred CCCceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------
Q 006275 94 ISSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------- 160 (652)
Q Consensus 94 ~~~~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------- 160 (652)
..++|+++|++|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 3457999999999963 469999999999999999999999999999999999999999999998753
Q ss_pred ----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHH
Q 006275 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (652)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (652)
.+|||++|++.+++..||+||+...... ......+..
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~---------------------------------------~~~~~~~~~ 141 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEVK 141 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH---------------------------------------SCCCHHHHH
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHH
Confidence 2599999999998899999998632110 001222345
Q ss_pred HHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEE
Q 006275 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVII 312 (652)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIiv 312 (652)
+++.++|+.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|+|||+|
T Consensus 142 ~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~v 220 (366)
T 3tui_C 142 RRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLI 220 (366)
T ss_dssp HHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6788899999996 67899999999999999999999999999999999999999999999988874 359999999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|||++.+..+||||++|++|++ ...|+..++.
T Consensus 221 THdl~~~~~~aDrv~vl~~G~i-v~~g~~~ev~ 252 (366)
T 3tui_C 221 THEMDVVKRICDCVAVISNGEL-IEQDTVSEVF 252 (366)
T ss_dssp ESCHHHHHHHCSEEEEEETTEE-EECCBHHHHH
T ss_pred ecCHHHHHHhCCEEEEEECCEE-EEEcCHHHHH
Confidence 9999999999999999999998 4778876654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=405.64 Aligned_cols=208 Identities=26% Similarity=0.378 Sum_probs=181.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------ceEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------~~i~ 164 (652)
+|+++|++|+|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 5999999999999999999999999999999999999999999999999999999999998742 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
||+|++.+++.+||+||+...... ......+..+++.++++
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~ 124 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGN---------------------------------------GKGRTAQERQRIEAMLE 124 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTT---------------------------------------SSCCSHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHH---------------------------------------cCCChHHHHHHHHHHHH
Confidence 999999998999999998643210 00112234567788899
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHH
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~ 320 (652)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.| ++.|+|||+||||++++.
T Consensus 125 ~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 125 LTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEAL 203 (359)
T ss_dssp HHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH
T ss_pred HcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 99996 6889999999999999999999999999999999999999999998887643 457999999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.+||||++|++|++ ...|+..++.
T Consensus 204 ~~aDri~vl~~G~i-~~~g~~~el~ 227 (359)
T 3fvq_A 204 QYADRIAVMKQGRI-LQTASPHELY 227 (359)
T ss_dssp HHCSEEEEEETTEE-EEEECHHHHH
T ss_pred HHCCEEEEEECCEE-EEEeCHHHHH
Confidence 99999999999998 4678876654
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-47 Score=392.28 Aligned_cols=210 Identities=22% Similarity=0.380 Sum_probs=179.8
Q ss_pred CceEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc------------e
Q 006275 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (652)
Q Consensus 96 ~~i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~------------~ 162 (652)
++|+++|++|+|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 46999999999975 4599999999999999999999999999999999999999999999998532 5
Q ss_pred EEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 163 i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
|||++|+|. .++..||+||+...... ......+..+++.+
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~ 126 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVN---------------------------------------MKLPEDEIRKRVDN 126 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHT---------------------------------------SCCCHHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 999999973 34578999998632100 00112234566778
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (652)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++
T Consensus 127 ~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 127 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred HHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 89999995 67899999999999999999999999999999999999999999999988764 34899999999999
Q ss_pred HHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
++..+||+|++|++|++ .+.|+..++..
T Consensus 206 ~~~~~~drv~~l~~G~i-~~~g~~~~~~~ 233 (275)
T 3gfo_A 206 IVPLYCDNVFVMKEGRV-ILQGNPKEVFA 233 (275)
T ss_dssp SGGGGCSEEEEEETTEE-EEEECHHHHTH
T ss_pred HHHHhCCEEEEEECCEE-EEECCHHHHhc
Confidence 99999999999999998 47788777654
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=386.30 Aligned_cols=210 Identities=24% Similarity=0.411 Sum_probs=179.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc------------eE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~------------~i 163 (652)
++|+++|++++|+++++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 369999999999988999999999999999999999999999999999999999999999987432 49
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
||++|++.+++..||+||+...... +. ........+++.+++
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~l 144 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMK--------------VR------------------------KWPREKAEAKAMELL 144 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHH--------------TS------------------------CCCHHHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHH--------------Hc------------------------CCCHHHHHHHHHHHH
Confidence 9999999887888999998532100 00 001112234567888
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (652)
+.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++.
T Consensus 145 ~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~ 223 (263)
T 2olj_A 145 DKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAR 223 (263)
T ss_dssp HHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred HHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 999996 67889999999999999999999999999999999999999999999988774 34899999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.+||+|++|++|++. +.|+.+++.
T Consensus 224 ~~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
T 2olj_A 224 EVGDRVLFMDGGYII-EEGKPEDLF 247 (263)
T ss_dssp HHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HhCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999984 667776653
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-47 Score=404.40 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=182.7
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q 168 (652)
.|+++|++|+|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 5999999999999999999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++.+||+||+...... ...+..+..+++.++++.+|+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKL---------------------------------------AGAKKEVINQRVNQVAEVLQL 123 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CCcCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99998999999998632110 012223445678889999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|+|+|+||||++++..+||
T Consensus 124 ~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aD 202 (381)
T 3rlf_A 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (381)
T ss_dssp G-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCS
T ss_pred c-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC
Confidence 6 68899999999999999999999999999999999999999999998887764 349999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~~ 345 (652)
||++|++|++. ..|+..++.
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (381)
T 3rlf_A 203 KIVVLDAGRVA-QVGKPLELY 222 (381)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEeCHHHHH
Confidence 99999999984 667766543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-47 Score=379.15 Aligned_cols=201 Identities=27% Similarity=0.387 Sum_probs=173.2
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------ce
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------~~ 162 (652)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence 6999999999998889999999999999999999999999999999999999999999998742 24
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|+|++|++.+++..||+||+...... . ........+++.++
T Consensus 84 i~~v~q~~~l~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 124 (224)
T 2pcj_A 84 LGFVFQFHYLIPELTALENVIVPMLK---------------M------------------------GKPKKEAKERGEYL 124 (224)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHH---------------T------------------------TCCHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHHH
Confidence 99999999888889999998532100 0 00111223456788
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (652)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++
T Consensus 125 l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 125 LSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp HHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 8999996 57889999999999999999999999999999999999999999999988764 3489999999999998
Q ss_pred HhhcCeEEEEcCCeEEEecC
Q 006275 320 DQLCTKIVETEMGVSRTYEG 339 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g 339 (652)
.+||+|++|++|++. +.|
T Consensus 204 -~~~d~v~~l~~G~i~-~~g 221 (224)
T 2pcj_A 204 -ELTHRTLEMKDGKVV-GEI 221 (224)
T ss_dssp -TTSSEEEEEETTEEE-EEE
T ss_pred -HhCCEEEEEECCEEE-EEe
Confidence 899999999999874 444
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=386.74 Aligned_cols=209 Identities=26% Similarity=0.450 Sum_probs=179.2
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc---------------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~--------------- 161 (652)
+|+++|++++|+++++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 69999999999988999999999999999999999999999999999999999999999987421
Q ss_pred --------eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChh
Q 006275 162 --------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (652)
Q Consensus 162 --------~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (652)
.|||++|++.+++..||+||+...... +. .....
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~--------------~~------------------------~~~~~ 127 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------VL------------------------GLSKH 127 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH--------------TT------------------------CCCHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHH--------------hc------------------------CCCHH
Confidence 399999999888888999998532100 00 00111
Q ss_pred cHHHHHHHHhhhcCCCccc-ccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeE
Q 006275 234 TLDAKVSKLMPELGFTADD-GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (652)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~-~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tv 309 (652)
...+++.++++.+|+. +. .++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+||
T Consensus 128 ~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tv 206 (262)
T 1b0u_A 128 DARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 206 (262)
T ss_dssp HHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 2245677889999996 56 799999999999999999999999999999999999999999999988764 348999
Q ss_pred EEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 310 IivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+||||++++..+||+|++|++|++. ..|+.+++.
T Consensus 207 i~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 241 (262)
T 1b0u_A 207 VVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQVF 241 (262)
T ss_dssp EEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999984 668776654
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-47 Score=382.22 Aligned_cols=208 Identities=26% Similarity=0.361 Sum_probs=172.8
Q ss_pred ceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------
Q 006275 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------ 160 (652)
+|+++|++|+|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 3899999999963 469999999999999999999999999999999999999999999998742
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..|||++|++.+++..||+||+...... ... ......+..++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~---------------~~~---------------------~~~~~~~~~~~ 124 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIF---------------KYR---------------------GAMSGEERRKR 124 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHT---------------CSS---------------------SCCCHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHh---------------hhc---------------------cCCCHHHHHHH
Confidence 1499999999988889999998632100 000 00111223456
Q ss_pred HHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEec
Q 006275 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISH 314 (652)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsH 314 (652)
+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||+|||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 204 (235)
T 3tif_A 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred HHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 678889999974445899999999999999999999999999999999999999999999888743 3899999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecCChH
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g~~~ 342 (652)
|++.+ .+||+|++|++|++. ..+...
T Consensus 205 d~~~~-~~~d~i~~l~~G~i~-~~~~~~ 230 (235)
T 3tif_A 205 DINVA-RFGERIIYLKDGEVE-REEKLR 230 (235)
T ss_dssp CHHHH-TTSSEEEEEETTEEE-EEEECC
T ss_pred CHHHH-HhCCEEEEEECCEEE-EEcChh
Confidence 99965 799999999999984 444433
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=382.91 Aligned_cols=209 Identities=26% Similarity=0.382 Sum_probs=179.0
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEE
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAF 165 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~ 165 (652)
+++|+++|++++|+++++|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|||
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 457999999999998899999999999999999999999999999999999999999999998743 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++..||+||+..... +. ........+++.++++.
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~ 133 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAG---------------FY------------------------ASSSSEIEEMVERATEI 133 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHH---------------HH------------------------CCCHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCCCcHHHHHHHHHH---------------Hc------------------------CCChHHHHHHHHHHHHH
Confidence 9999988788899999853210 00 00111223456678888
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (652)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++++..+
T Consensus 134 ~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 212 (256)
T 1vpl_A 134 AGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL 212 (256)
T ss_dssp HCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTT
T ss_pred CCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Confidence 9996 57889999999999999999999999999999999999999999999988774 3589999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||++++|++|++. +.|+.+++
T Consensus 213 ~d~v~~l~~G~i~-~~g~~~~~ 233 (256)
T 1vpl_A 213 CDRIALIHNGTIV-ETGTVEEL 233 (256)
T ss_dssp CSEEEEEETTEEE-EEEEHHHH
T ss_pred CCEEEEEECCEEE-EecCHHHH
Confidence 9999999999984 56776654
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=383.45 Aligned_cols=206 Identities=23% Similarity=0.309 Sum_probs=179.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eEEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i~~ 165 (652)
++|+++|++++|+++++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .++|
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 469999999999999999999999999999999999999999999999999999999999988532 4999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+.+..||+||+...... .......+++.++++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~ 128 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAP-----------------------------------------YGGSQDRQALQQVMAQ 128 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTT-----------------------------------------SCSTTHHHHHHHHHHH
T ss_pred EecCCccCCCCCHHHHHHhhhhh-----------------------------------------cCcHHHHHHHHHHHHH
Confidence 99999888889999998632100 0112234566788889
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHcc------CCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ------DPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~------~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (652)
+|+. +..++++.+|||||||||+|||||+. +|++|||||||+|||+.++..+.++|++ .++|||+||||
T Consensus 129 ~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 129 TDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp TTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 9996 57889999999999999999999999 9999999999999999999999887743 35799999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
++++..+||+|++|++|++ .+.|+.+++
T Consensus 208 l~~~~~~~d~v~vl~~G~i-~~~g~~~~~ 235 (266)
T 4g1u_C 208 LNLAALYADRIMLLAQGKL-VACGTPEEV 235 (266)
T ss_dssp HHHHHHHCSEEEEEETTEE-EEEECHHHH
T ss_pred HHHHHHhCCEEEEEECCEE-EEEcCHHHH
Confidence 9999999999999999998 467876654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-46 Score=379.14 Aligned_cols=207 Identities=22% Similarity=0.325 Sum_probs=175.2
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~ 164 (652)
++|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..||
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 36999999999998889999999999999999999999999999999999999999999998742 1399
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+++..||+||+...... ........+.+.++++
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~----------------------------------------~~~~~~~~~~~~~~l~ 124 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYN----------------------------------------RKDKEGIKRDLEWIFS 124 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTT----------------------------------------CCCSSHHHHHHHHHHH
T ss_pred EEecCCccCCCCcHHHHHHHhhhc----------------------------------------CCCHHHHHHHHHHHHH
Confidence 999999888888999998632100 0001122334556677
Q ss_pred hcC-CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006275 245 ELG-FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~lg-l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (652)
.++ +. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++.
T Consensus 125 ~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 125 LFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp HCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred HcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 773 64 46788899999999999999999999999999999999999999999988874 35899999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
.+||+|++|++|++. +.|+..++
T Consensus 204 ~~~d~v~~l~~G~i~-~~g~~~~~ 226 (240)
T 1ji0_A 204 KVAHYGYVLETGQIV-LEGKASEL 226 (240)
T ss_dssp HHCSEEEEEETTEEE-EEEEHHHH
T ss_pred HhCCEEEEEECCEEE-EEcCHHHH
Confidence 999999999999984 56766554
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-46 Score=396.14 Aligned_cols=210 Identities=27% Similarity=0.450 Sum_probs=181.9
Q ss_pred CCceEEEeEEEEe-CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEE
Q 006275 95 SSGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAF 165 (652)
Q Consensus 95 ~~~i~v~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~ 165 (652)
..+|+++|++++| +++++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..|||
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence 3469999999999 77789999999999999999999999999999999999999999999998743 35999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
|+|++.+++.+||+||+...... ...+..+.++++.++++.
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~ 132 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLRE---------------------------------------KRVPKDEMDARVRELLRF 132 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999998899999998632110 001112334567788999
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~ 321 (652)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|++ .|+|+|+||||++++..
T Consensus 133 ~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~ 211 (355)
T 1z47_A 133 MRLE-SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE 211 (355)
T ss_dssp TTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 9996 678999999999999999999999999999999999999999999999887643 48999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+||+|++|++|++. ..|++.++.
T Consensus 212 ~adri~vl~~G~i~-~~g~~~~l~ 234 (355)
T 1z47_A 212 VADRVLVLHEGNVE-QFGTPEEVY 234 (355)
T ss_dssp HCSEEEEEETTEEE-EEECHHHHH
T ss_pred hCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999984 668766553
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=385.08 Aligned_cols=219 Identities=21% Similarity=0.236 Sum_probs=179.1
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~ 164 (652)
++|+++|++++|+++++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 46999999999998899999999999999999999999999999999999999999999998742 1499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHH-HhCChhcHHHHHHHHh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKA-QAVNLDTLDAKVSKLM 243 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ll 243 (652)
|++|++.+++..||+||+....... .......+ +.. .........+++.+++
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~-------------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l 138 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICP-------------------GESPLNSL--------FYKKWIPKEEEMVEKAFKIL 138 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTST-------------------TSCHHHHH--------HHCSSCCCCHHHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhh-------------------ccCccccc--------ccccccCCHHHHHHHHHHHH
Confidence 9999998878899999986321000 00000000 000 0001112345677889
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (652)
+.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++.
T Consensus 139 ~~~~l~-~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~ 217 (257)
T 1g6h_A 139 EFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL 217 (257)
T ss_dssp HHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTG
T ss_pred HHcCCc-hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 999996 67889999999999999999999999999999999999999999999988874 34899999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~ 343 (652)
.+||+|++|++|++. +.|+.++
T Consensus 218 ~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 218 NYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp GGCSEEEEEETTEEE-EEEESHH
T ss_pred HhCCEEEEEECCEEE-EEeCHHH
Confidence 999999999999984 5676665
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-46 Score=384.92 Aligned_cols=207 Identities=28% Similarity=0.412 Sum_probs=179.9
Q ss_pred CcEEEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------
Q 006275 422 RSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------- 489 (652)
.++|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 347999999999975 46999999999999999999999999999999999999999999999998762
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p 562 (652)
.+|++|++...+ +..||.+|+.+..... ..+.+.++++.+++ .+..++++.+|||||||||+|||||+.+|
T Consensus 85 ~ig~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 85 SIGIVFQDPDNQL-FSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp SEEEECSSGGGTC-CSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCccccc-ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 246677653333 4789999998764321 13457889999999 47789999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++ ..|++++.+..
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~~~ 234 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFAE 234 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHTHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHhcC
Confidence 999999999999999999999988754 469999999999999999999999999998 46888876543
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=392.26 Aligned_cols=209 Identities=24% Similarity=0.342 Sum_probs=180.8
Q ss_pred CCCCcEEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----
Q 006275 419 RSGRSVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----- 489 (652)
Q Consensus 419 ~~~~~~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----- 489 (652)
....++|+++||+++|+. ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 19 ~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 19 DDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp ----CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH
T ss_pred CCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 345568999999999964 46999999999999999999999999999999999999999999999998763
Q ss_pred --------cceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHH
Q 006275 490 --------PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 --------~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LA 555 (652)
.++++|+ ..+++.+||.+|+.+.... ...+.+.++|+.+|+. +..++++.+|||||||||+||
T Consensus 99 ~~~~~r~~Ig~v~Q~--~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 99 ELTKARRQIGMIFQH--FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHHHHHTTEEEECSS--CCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCC--CccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 2455654 4677889999999876432 1234578899999994 678999999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++ ..|++++.+..
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev~~~ 254 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVFSH 254 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHHHSS
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhC
Confidence 9999999999999999999999999999998754 569999999999999999999999999998 46888876643
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-46 Score=395.46 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=181.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q 168 (652)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 5899999999988889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++.+||+||+...... ......+..+++.++++.+|+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLEL---------------------------------------RKAPREEIDKKVREVAKMLHI 123 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99998899999998632110 001112334567788999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|+|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 124 D-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp T-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 6 678999999999999999999999999999999999999999999999887643 48999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+|++|++|++. ..|+..++.
T Consensus 203 ri~vl~~G~i~-~~g~~~~~~ 222 (362)
T 2it1_A 203 RIAVIREGEIL-QVGTPDEVY 222 (362)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999984 568776653
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=379.01 Aligned_cols=205 Identities=24% Similarity=0.380 Sum_probs=179.1
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (652)
++|+++||+++|+++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 3699999999999889999999999999999999999999999999999999999999999998763
Q ss_pred ----------cceecccccccCCCCCCHHHHHHHhh-h--hc----cHHHHHHHHhhCCCChhh-hccCcCCCCHHHHHH
Q 006275 490 ----------PNYFEQNQAEALDLDKTVLETVAEAA-E--DW----RIDDIKGLLGRCNFKADM-LDRKVSLLSGGEKAR 551 (652)
Q Consensus 490 ----------~~~~~~~~~~~~~~~~tv~e~~~~~~-~--~~----~~~~~~~~L~~~~l~~~~-~~~~~~~LSgGqrqr 551 (652)
.+|++|+ ..+++.+||.+|+.+.. . .. ..+.+.++++.+|+. +. .++++.+||||||||
T Consensus 85 ~~~~~~~~~~i~~v~Q~--~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQH--FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp HHHHHHHHHHEEEECSS--CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHH
T ss_pred hhhHHHHhcceEEEecC--cccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHH
Confidence 1344554 45677889999998742 1 11 124577899999995 56 799999999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 552 v~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
|+|||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++. .|++++.
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 240 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQV 240 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999999998765 5699999999999999999999999999974 5888877
Q ss_pred hhh
Q 006275 629 FTS 631 (652)
Q Consensus 629 ~~~ 631 (652)
.+.
T Consensus 241 ~~~ 243 (262)
T 1b0u_A 241 FGN 243 (262)
T ss_dssp HHS
T ss_pred HhC
Confidence 653
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-46 Score=395.74 Aligned_cols=208 Identities=25% Similarity=0.392 Sum_probs=179.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q 168 (652)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 5899999999998889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++.+||+||+....... . ....+..+++.++++.+|+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~-----------------~----------------------~~~~~~~~~v~~~l~~~~L 123 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRAR-----------------R----------------------ISKDEVEKRVVEIARKLLI 123 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSS-----------------C----------------------SHHHHTTHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHhc-----------------C----------------------CCHHHHHHHHHHHHHHcCC
Confidence 999988999999986432100 0 0001123457788999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|+|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 124 D-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS 202 (359)
T ss_dssp G-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 6 678999999999999999999999999999999999999999999998887643 48999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+|++|++|++. ..|++.++.
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (359)
T 2yyz_A 203 RIAVFNQGKLV-QYGTPDEVY 222 (359)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999984 668766543
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=394.74 Aligned_cols=208 Identities=29% Similarity=0.449 Sum_probs=180.7
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------ce
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------~~ 162 (652)
+|+++|++++|++.++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 5899999999998889999999999999999999999999999999999999999999998732 25
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
||||+|++.+++.+||+||+...... ......+..+++.++
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~ 123 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKL---------------------------------------RKVPRQEIDQRVREV 123 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHH
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999998899999998632110 001112334567788
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (652)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|++ .|+|+|+||||+++
T Consensus 124 l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 124 AELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 9999996 678999999999999999999999999999999999999999999998887643 48999999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+..+||+|++|++|++. ..|++.++.
T Consensus 203 a~~~adri~vl~~G~i~-~~g~~~~l~ 228 (372)
T 1g29_1 203 AMTMGDRIAVMNRGVLQ-QVGSPDEVY 228 (372)
T ss_dssp HHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHhCCEEEEEeCCEEE-EeCCHHHHH
Confidence 99999999999999984 668776654
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=376.29 Aligned_cols=204 Identities=25% Similarity=0.391 Sum_probs=179.2
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------cc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~ 491 (652)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 699999999999889999999999999999999999999999999999999999999999998762 23
Q ss_pred eecccccccCCCCCCHHHHHHHhh-h--hc----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAA-E--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~-~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
|++|+ ..+++.+||.||+.+.. . .. ..+.+.++++.+++ .+..++++.+|||||||||+|||||+.+|++
T Consensus 104 ~v~Q~--~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l 180 (263)
T 2olj_A 104 MVFQR--FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALAMEPKI 180 (263)
T ss_dssp EECSS--CCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeCC--CcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-chHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence 55554 34667889999998743 1 11 13457789999999 4678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++. .|++++..+.
T Consensus 181 llLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~~ 249 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE-EGKPEDLFDR 249 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999998765 5699999999999999999999999999974 5888877653
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=390.54 Aligned_cols=204 Identities=26% Similarity=0.427 Sum_probs=180.1
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------cc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~ 491 (652)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 599999999999999999999999999999999999999999999999999999999999998761 23
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
+++|+ ..+++.+||.||+.+.... ...+++.++++.+++ .+..++++.+|||||||||+|||||+.+|++|
T Consensus 84 ~vfQ~--~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 84 YLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGI-SELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp EECTT--CCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeCC--CcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 55554 4678899999999986431 123457889999999 47889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||||++||+..+..+.+.|. +.+.|||+||||++++..+||||++|++|++. ..|++++....
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~el~~~ 229 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL-QTASPHELYRQ 229 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEE-EEECHHHHHHS
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EEeCHHHHHhC
Confidence 9999999999999999887554 34679999999999999999999999999997 45888876654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=394.69 Aligned_cols=209 Identities=28% Similarity=0.399 Sum_probs=175.9
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEe
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~ 167 (652)
.+|+++|++++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 10 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 35999999999998889999999999999999999999999999999999999999999998743 3599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|++.+++.+||+||+....... .....+..+++.++++.+|
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~---------------------------------------~~~~~~~~~~v~~~l~~~~ 130 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIK---------------------------------------KFPKDEIDKRVRWAAELLQ 130 (372)
T ss_dssp C------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHHTT
T ss_pred cCcccCCCCCHHHHHHHHHHhc---------------------------------------CCCHHHHHHHHHHHHHHcC
Confidence 9999888999999986432100 0111223456778899999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~ 323 (652)
+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|+|+|+||||++++..+|
T Consensus 131 L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a 209 (372)
T 1v43_A 131 IE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 209 (372)
T ss_dssp CG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC
T ss_pred Ch-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 96 678999999999999999999999999999999999999999999999887643 4899999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+|++|++|++. ..|++.++.
T Consensus 210 dri~vl~~G~i~-~~g~~~~l~ 230 (372)
T 1v43_A 210 DRIAVMNRGQLL-QIGSPTEVY 230 (372)
T ss_dssp SEEEEEETTEEE-EEECHHHHH
T ss_pred CEEEEEECCEEE-EeCCHHHHH
Confidence 999999999984 668766653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=394.37 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=180.2
Q ss_pred ceEEEeEEEEeCCee--eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------c
Q 006275 97 GVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~--vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------~ 161 (652)
+|+++|++++|++.+ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 589999999998877 9999999999999999999999999999999999999999999998732 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
.||||+|++.+++.+||+||+...... ......+..+++.+
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~ 123 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTN---------------------------------------MKMSKEEIRKRVEE 123 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT---------------------------------------SSCCHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 599999999998899999998643210 00111223456778
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~ 317 (652)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|++ .|+|+|+||||++
T Consensus 124 ~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 124 VAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 89999996 678999999999999999999999999999999999999999999999887643 4899999999999
Q ss_pred HHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
++..+||+|++|++|++. ..|++.++.
T Consensus 203 ~~~~~adri~vl~~G~i~-~~g~~~~l~ 229 (353)
T 1oxx_K 203 DIFAIADRVGVLVKGKLV-QVGKPEDLY 229 (353)
T ss_dssp HHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999984 667766653
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=376.32 Aligned_cols=205 Identities=26% Similarity=0.403 Sum_probs=180.1
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cc
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (652)
.++|+++|+++.|+++++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 9 ~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred cceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 35799999999999999999999999999999999999999999999999999999999999998763 23
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc------C
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK------P 561 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~------~ 561 (652)
++.|+ ..+.+..||.||+.+.... ...+.+.++++.+++. +..++++.+|||||||||+|||||+. +
T Consensus 89 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 89 VMRQY--SELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EECSC--CCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEecC--CccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 45554 3455778999999876432 2245678899999995 67899999999999999999999999 9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---C-ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEY---K-GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~-~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|++|||||||+|||+.++..+.+.|+++ + .|||+||||++++..+||||++|++|+++ ..|++++..+
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~~~ 237 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEVLN 237 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHCC
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHHhC
Confidence 9999999999999999999999998765 3 49999999999999999999999999998 4688777643
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=369.53 Aligned_cols=194 Identities=27% Similarity=0.383 Sum_probs=168.5
Q ss_pred EEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
+|+++||+++|++ ..+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 4899999999973 46999999999999999999999999999999999999999999999998752
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhh---------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~---------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.+|++|+ +.+++.+||.||+...... ...+.+.++++.+++.....++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~--~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQ--FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTT--CCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecC--CccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 2455554 4567788999999875311 113457789999999644458999999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+ .+||||++|++|++.+
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER 225 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998764 56999999999965 7899999999999974
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=388.51 Aligned_cols=203 Identities=27% Similarity=0.402 Sum_probs=177.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q 168 (652)
+|+++|++++|+++ +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 37999999999888 9999999999999999999999999999999999999999999998753 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++.+||+||+...... ..... . +++.++++.+|+
T Consensus 80 ~~~l~~~ltv~enl~~~~~~---------------------------------------~~~~~-~--~~v~~~l~~~~L 117 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRM---------------------------------------KKIKD-P--KRVLDTARDLKI 117 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------HCCCC-H--HHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHH---------------------------------------cCCCH-H--HHHHHHHHHcCC
Confidence 99998899999998632100 00011 1 456788899999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.++|+ +.|+|+|+||||++++..+||
T Consensus 118 ~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad 196 (348)
T 3d31_A 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (348)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 67899999999999999999999999999999999999999999999988764 358999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~ 344 (652)
+|++|++|++. ..|++.++
T Consensus 197 ri~vl~~G~i~-~~g~~~~~ 215 (348)
T 3d31_A 197 RIAVVMDGKLI-QVGKPEEI 215 (348)
T ss_dssp EEEEESSSCEE-EEECHHHH
T ss_pred EEEEEECCEEE-EECCHHHH
Confidence 99999999984 56776654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-45 Score=390.50 Aligned_cols=203 Identities=28% Similarity=0.438 Sum_probs=180.7
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++||+++|++..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .++++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 489999999999999999999999999999999999999999999999999999999999998763 245666
Q ss_pred cccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+ ..+++.+||.||+.+.... ...+++.++++.+++ .+..++++.+|||||||||+|||||+.+|+||||||
T Consensus 83 ~--~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 83 S--YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp T--CCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTC-GGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred C--CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5 4678899999999886432 113457889999999 478899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||++||+..+..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++.++
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~~l~~ 223 (381)
T 3rlf_A 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELYH 223 (381)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EeCHHHHHh
Confidence 99999999999999988754 5799999999999999999999999999974 577777654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=363.86 Aligned_cols=194 Identities=27% Similarity=0.389 Sum_probs=170.7
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (652)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 3699999999999889999999999999999999999999999999999999999999999998752
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p 562 (652)
.+|++|+ ..+++.+|+.||+.+.... ...+.+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 83 ~i~~v~q~--~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p 159 (224)
T 2pcj_A 83 KLGFVFQF--HYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEP 159 (224)
T ss_dssp HEEEECSS--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred cEEEEecC--cccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 1344443 3566788999999875321 1134578899999994 6789999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
++|||||||++||+.++..+.+.|+++ +.|||+||||++++ .+||++++|++|+++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999998765 56999999999998 7899999999999874
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=380.92 Aligned_cols=213 Identities=25% Similarity=0.379 Sum_probs=176.4
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc------------e
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~------------~ 162 (652)
.++|+++|++++|+++++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 19 ~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred CceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 3469999999999988999999999999999999999999999999999999999999999988532 4
Q ss_pred EEEEeccCccCC--CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHH
Q 006275 163 IAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (652)
Q Consensus 163 i~~v~Q~~~~~~--~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (652)
|||++|++.+.+ ..||+||+.......... . ........+++.
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~----------~-------------------------~~~~~~~~~~~~ 143 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGV----------Y-------------------------QDIDDEIRNEAH 143 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC--------------------------------------------CCHHHHHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhcccc----------c-------------------------cCCcHHHHHHHH
Confidence 999999976433 459999986321100000 0 000112234567
Q ss_pred HHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeE--EEEecC
Q 006275 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPM--VIISHD 315 (652)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tv--IivsHd 315 (652)
++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|| |+||||
T Consensus 144 ~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd 222 (279)
T 2ihy_A 144 QLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF 222 (279)
T ss_dssp HHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC
Confidence 788999995 678899999999999999999999999999999999999999999999888743 38899 999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
++++..+||+|++|++|++. +.|+++++
T Consensus 223 ~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 250 (279)
T 2ihy_A 223 IEEITANFSKILLLKDGQSI-QQGAVEDI 250 (279)
T ss_dssp GGGCCTTCCEEEEEETTEEE-EEEEHHHH
T ss_pred HHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999999984 66776554
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=368.08 Aligned_cols=205 Identities=20% Similarity=0.289 Sum_probs=176.8
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------c
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (652)
.++|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 34799999999999889999999999999999999999999999999999999999999999998752 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh---c--cHHHHHHHHhhCC-CChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED---W--RIDDIKGLLGRCN-FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~---~--~~~~~~~~L~~~~-l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+|++|+ ..+++.+|+.||+.+.... . ....+.++++.++ + .+..++++.+|||||||||+|||||+.+|+|
T Consensus 84 ~~v~q~--~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 160 (240)
T 1ji0_A 84 ALVPEG--RRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp EEECSS--CCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH-HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEecC--CccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccH-hhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 345544 3566778999999875311 1 1234677888884 7 4567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|||+++|++|++.. .|++++..+
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 228 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELLD 228 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHHT
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHHhc
Confidence 9999999999999999999999765 4699999999999999999999999999974 577776543
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-45 Score=371.59 Aligned_cols=207 Identities=20% Similarity=0.299 Sum_probs=174.3
Q ss_pred ceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCC
Q 006275 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (652)
Q Consensus 97 ~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~ 175 (652)
+|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+ ...|+|++|++.+++.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~---~~~i~~v~q~~~~~~~ 80 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV---YQSIGFVPQFFSSPFA 80 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE---CSCEEEECSCCCCSSC
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE---eccEEEEcCCCccCCC
Confidence 599999999998 788999999999999999999999999999999999999999999984 3469999999988788
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccC
Q 006275 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (652)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (652)
.||+||+....... .. +. ........+++.++++.+|+. +..++
T Consensus 81 ~tv~enl~~~~~~~----------------~~--------~~-----------~~~~~~~~~~~~~~l~~~~l~-~~~~~ 124 (253)
T 2nq2_C 81 YSVLDIVLMGRSTH----------------IN--------TF-----------AKPKSHDYQVAMQALDYLNLT-HLAKR 124 (253)
T ss_dssp CBHHHHHHGGGGGG----------------SC--------TT-----------CCCCHHHHHHHHHHHHHTTCG-GGTTS
T ss_pred CCHHHHHHHhhhhh----------------cc--------cc-----------cCCCHHHHHHHHHHHHHcCCh-HHhcC
Confidence 99999986321000 00 00 000011234567788899996 57789
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHhhcCeEEEEcC
Q 006275 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEM 331 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~-g~tvIivsHd~~~l~~~~d~ii~l~~ 331 (652)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ . |+|||+||||++++..+||+|++|++
T Consensus 125 ~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~ 204 (253)
T 2nq2_C 125 EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204 (253)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999887743 3 89999999999999999999999999
Q ss_pred CeEEEecCChHHH
Q 006275 332 GVSRTYEGNYSQY 344 (652)
Q Consensus 332 G~~~~~~g~~~~~ 344 (652)
|+ .+.|+++++
T Consensus 205 G~--~~~g~~~~~ 215 (253)
T 2nq2_C 205 QN--FKFGETRNI 215 (253)
T ss_dssp TE--EEEEEHHHH
T ss_pred Ce--EecCCHHHH
Confidence 98 466776544
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=377.96 Aligned_cols=207 Identities=21% Similarity=0.295 Sum_probs=176.7
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------- 489 (652)
..++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 345799999999999889999999999999999999999999999999999999999999999997653
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhh----------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.+|++|+....+...+||.||+.+... ....+++.++++.+|+ .+..++++.+|||||||||+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-SAKAQQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHH
Confidence 235555432223335699999986421 0112457789999999 4678999999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceE--EEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTV--ITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv--i~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+.+|+||||||||++||+.+++.+.++|+++ +.|| |+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 251 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI-QQGAVEDIL 251 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE-EEEEHHHHC
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999999999765 5699 99999999999999999999999997 457776654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=370.58 Aligned_cols=202 Identities=27% Similarity=0.365 Sum_probs=173.4
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q~ 169 (652)
|+++|++++|++ +|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|||++|+
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 789999999976 59999999999 9999999999999999999999999999999998742 359999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+++..||+||+...... .......+++.++++.+|+.
T Consensus 79 ~~l~~~ltv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~ 117 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGLRN-----------------------------------------VERVERDRRVREMAEKLGIA 117 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTT-----------------------------------------SCHHHHHHHHHHHHHTTTCT
T ss_pred CccCCCCcHHHHHHHHHHH-----------------------------------------cCCchHHHHHHHHHHHcCCH
Confidence 9888888999998632110 00000134566788899996
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (652)
+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||+||||++++..+||+
T Consensus 118 -~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~ 196 (240)
T 2onk_A 118 -HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADE 196 (240)
T ss_dssp -TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSE
T ss_pred -HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 577899999999999999999999999999999999999999999999888743 389999999999999999999
Q ss_pred EEEEcCCeEEEecCChHHHH
Q 006275 326 IVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 326 ii~l~~G~~~~~~g~~~~~~ 345 (652)
|++|++|++. +.|+.+++.
T Consensus 197 i~~l~~G~i~-~~g~~~~~~ 215 (240)
T 2onk_A 197 VAVMLNGRIV-EKGKLKELF 215 (240)
T ss_dssp EEEEETTEEE-EEECHHHHH
T ss_pred EEEEECCEEE-EECCHHHHH
Confidence 9999999984 667766653
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=384.55 Aligned_cols=208 Identities=25% Similarity=0.392 Sum_probs=182.4
Q ss_pred CCCcEEEEEeeeeEe-CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------c
Q 006275 420 SGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------P 490 (652)
Q Consensus 420 ~~~~~i~~~~v~~~y-~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~ 490 (652)
.+..+|+++||+++| +++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 356689999999999 8888999999999999999999999999999999999999999999999998762 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+|++|+ ..+++.+||.||+.+..... ..+++.++++.+++ .+..++++.+|||||||||+|||||+.+|+|
T Consensus 90 g~v~Q~--~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 90 GLVFQN--YALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL-ESYANRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp EEECGG--GCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEecC--cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-hhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 455554 45788899999998864311 13457889999999 4778999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|++.. .|++++..+.
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~~~ 236 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ-FGTPEEVYEK 236 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhC
Confidence 9999999999999999999988754 5699999999999999999999999999974 5888776543
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=369.09 Aligned_cols=205 Identities=22% Similarity=0.315 Sum_probs=179.2
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------ccee
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYF 493 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~ 493 (652)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v 93 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL 93 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE
Confidence 4699999999999889999999999999999999999999999999999999999999999998752 2455
Q ss_pred cccccccCCCCCCHHHHHHHhhhh--cc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlL 567 (652)
+|+ ..+++.+|+.||+.+.... .. .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|+||||
T Consensus 94 ~q~--~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 170 (256)
T 1vpl_A 94 PEE--AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL 170 (256)
T ss_dssp CTT--CCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCC--CCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 554 3466778999999875321 11 23577899999994 678999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 568 DEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 568 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++. ..|++++..+.
T Consensus 171 DEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~ 236 (256)
T 1vpl_A 171 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKER 236 (256)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHHH
T ss_pred eCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE-EecCHHHHHHh
Confidence 9999999999999999999765 469999999999999999999999999997 45777776554
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-45 Score=371.87 Aligned_cols=202 Identities=20% Similarity=0.279 Sum_probs=176.6
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------c
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (652)
.++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 34799999999999889999999999999999999999999999999999999999999999998762 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh---------------c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHH
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED---------------W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~---------------~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqr 551 (652)
+|++|+ ..+++.+||.||+.+.... . ....+.++++.+|+. +..++++.+||||||||
T Consensus 85 ~~v~q~--~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 85 VRTFQT--PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKL 161 (257)
T ss_dssp EECCCC--CGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHH
T ss_pred EEEccC--CccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCHHHHHH
Confidence 345554 3456678999999875321 1 123577899999994 67899999999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhh
Q 006275 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNV 627 (652)
Q Consensus 552 v~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~ 627 (652)
|+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++. .|++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EeCHHH
Confidence 99999999999999999999999999999999999765 5699999999999999999999999999974 576666
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-45 Score=373.89 Aligned_cols=207 Identities=26% Similarity=0.353 Sum_probs=175.3
Q ss_pred ceEEEeEEEEeC--C---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------ceEE
Q 006275 97 GVKLENISKSYK--G---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y~--~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------~~i~ 164 (652)
+|+++|++++|+ + +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..||
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 489999999997 4 679999999999999999999999999999999999999999999998853 2599
Q ss_pred EEeccC-ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 165 FLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 165 ~v~Q~~-~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
|++|++ ..++..||+||+...... . .......+++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~-~~~~~~~~~~~~~l 121 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKN---------------------------------------F-YPDRDPVPLVKKAM 121 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTT---------------------------------------T-CTTSCSHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHh---------------------------------------c-CCHHHHHHHHHHHH
Confidence 999996 455678999998532100 0 01112234567788
Q ss_pred hhcCCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006275 244 PELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (652)
Q Consensus 244 ~~lgl~~-~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (652)
+.+|+.. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++++
T Consensus 122 ~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp HHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred HHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999952 46789999999999999999999999999999999999999999999988774 2489999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHH
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
..+||+|++|++|++. +.|+..++
T Consensus 202 ~~~~d~v~~l~~G~i~-~~g~~~~~ 225 (266)
T 2yz2_A 202 INHVDRVVVLEKGKKV-FDGTRMEF 225 (266)
T ss_dssp GGGCSEEEEEETTEEE-EEEEHHHH
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999984 66766554
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-45 Score=371.29 Aligned_cols=209 Identities=24% Similarity=0.298 Sum_probs=170.9
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC--CCCCCcEEEECCCC-----------ceE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSN-----------MKI 163 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~--~~p~~G~i~~~~~~-----------~~i 163 (652)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.++|.+ ..+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999988999999999999999999999999999999999998 78999999998743 138
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|++.+++..||+||+...... .... ........+++.+++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~--------------~~~~----------------------~~~~~~~~~~~~~~l 126 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQA--------------KLGR----------------------EVGVAEFWTKVKKAL 126 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHH--------------HHTS----------------------CCCHHHHHHHHHHHH
T ss_pred EEeccCCccccCCCHHHHHHHHHHh--------------hccc----------------------cCCHHHHHHHHHHHH
Confidence 9999999888889999998532100 0000 000112234567788
Q ss_pred hhcCCCcccccCCCCC-CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006275 244 PELGFTADDGDRLVAS-FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~-LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (652)
+.+|+..+..++++.+ |||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++
T Consensus 127 ~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 127 ELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL 206 (250)
T ss_dssp HHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred HHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 9999954678899998 99999999999999999999999999999999999999988874 3589999999999999
Q ss_pred Hhh-cCeEEEEcCCeEEEecCChH
Q 006275 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (652)
Q Consensus 320 ~~~-~d~ii~l~~G~~~~~~g~~~ 342 (652)
..+ ||+|++|++|++. +.|+.+
T Consensus 207 ~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 207 NYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp GTSCCSEEEEEETTEEE-EEESHH
T ss_pred HHhcCCEEEEEECCEEE-EEeCHH
Confidence 888 5999999999984 567654
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=382.27 Aligned_cols=204 Identities=26% Similarity=0.413 Sum_probs=180.4
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 489999999999889999999999999999999999999999999999999999999999998762 245555
Q ss_pred cccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+ ..+++.+||.+|+.+..... ..+++.++++.+++ .+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE 159 (359)
T 2yyz_A 83 N--YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI-DNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE 159 (359)
T ss_dssp S--CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred C--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4 45778899999999864321 12457889999999 467899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++.++.
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~~~ 224 (359)
T 2yyz_A 160 PLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ-YGTPDEVYDS 224 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHhC
Confidence 99999999999999988754 5699999999999999999999999999974 5888776543
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-44 Score=369.37 Aligned_cols=216 Identities=19% Similarity=0.261 Sum_probs=176.8
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC--CCCCCcEEEECCCCc-----------e
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------K 162 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~--~~p~~G~i~~~~~~~-----------~ 162 (652)
++|+++|++++|+++++|+||||+|++|++++|+||||||||||+++|+|+ ++|++|+|.++|.+. .
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 469999999999988999999999999999999999999999999999999 468999999987531 3
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|+|++|++.+++..|+.+|+...... +..... . ......+..+++.++
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~----------~~~~~~-~---------------------~~~~~~~~~~~~~~~ 146 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNA----------VRSYRG-Q---------------------ETLDRFDFQDLMEEK 146 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHH----------HHHGGG-C---------------------CCCCHHHHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHh----------hhhhhc-c---------------------ccCCHHHHHHHHHHH
Confidence 99999999888889999998532110 000000 0 000111234567788
Q ss_pred hhhcCCCcccccCCCC-CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~-~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~ 318 (652)
++.+|+.....++++. +|||||||||+|||||+.+|+||||||||+|||+.+++++.++|++ .|+|||+||||+++
T Consensus 147 l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 226 (267)
T 2zu0_C 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 226 (267)
T ss_dssp HHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG
T ss_pred HHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH
Confidence 9999996456788887 5999999999999999999999999999999999999999998753 48899999999999
Q ss_pred HHhh-cCeEEEEcCCeEEEecCChHHH
Q 006275 319 LDQL-CTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 319 l~~~-~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+..+ ||+|++|++|++. +.|+.+++
T Consensus 227 ~~~~~~d~v~~l~~G~i~-~~g~~~~~ 252 (267)
T 2zu0_C 227 LDYIKPDYVHVLYQGRIV-KSGDFTLV 252 (267)
T ss_dssp GGTSCCSEEEEEETTEEE-EEECTTHH
T ss_pred HHhhcCCEEEEEECCEEE-EEcCHHHH
Confidence 9886 9999999999984 56776543
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=381.15 Aligned_cols=203 Identities=28% Similarity=0.424 Sum_probs=179.8
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
||+++||+++|+++ +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 48999999999888 999999999999999999999999999999999999999999999998762 246665
Q ss_pred cccccCCCCCCHHHHHHHhhhh---ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 496 NQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
+ ..+++.+||.||+.+.... ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 80 ~--~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 80 N--YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp T--CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred C--cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 4 4577889999999886431 1226688999999994 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 573 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++..+.
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~~~~~ 218 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEIFEK 218 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHHHSS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999988754 5699999999999999999999999999974 5888776543
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=382.19 Aligned_cols=204 Identities=27% Similarity=0.390 Sum_probs=180.1
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 489999999999888999999999999999999999999999999999999999999999998762 245555
Q ss_pred cccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+ ..+++.+||.+|+.+.... ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 159 (362)
T 2it1_A 83 N--WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE 159 (362)
T ss_dssp T--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred C--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4 4577889999999886421 1124578899999995 67899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++.++.
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~~~~~ 224 (362)
T 2it1_A 160 PLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ-VGTPDEVYYK 224 (362)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhC
Confidence 99999999999999988754 5699999999999999999999999999974 5787776543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-44 Score=361.87 Aligned_cols=201 Identities=26% Similarity=0.406 Sum_probs=175.4
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++|++++|++ +|+++||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 4789999999976 59999999999 999999999999999999999999999999999998752 245555
Q ss_pred cccccCCCCCCHHHHHHHhhhh----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 496 NQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
+ ..+++.+|+.||+.+.... ...+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 78 ~--~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 78 D--YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp S--CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred C--CccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 4 3466788999999875321 1234578899999995 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 572 NHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+|||+.+++.+.+.|+++ +.|||+||||++++..+|||+++|++|++. ..|++++..+.
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~ 217 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELFSA 217 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHhC
Confidence 999999999999998764 569999999999999999999999999997 45888877643
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-44 Score=381.53 Aligned_cols=204 Identities=25% Similarity=0.404 Sum_probs=179.4
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (652)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 589999999999889999999999999999999999999999999999999999999999997652
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
.+|++|+ ..+++.+||.+|+.+..... ..+++.++++.+++ .+..++++.+|||||||||+|||||+.+|+
T Consensus 83 ig~v~Q~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 159 (372)
T 1g29_1 83 IAMVFQS--YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (372)
T ss_dssp EEEECSC--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC-GGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEEEeCC--CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-chHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1345554 45778999999998864311 12457889999999 467899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++.++.
T Consensus 160 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~~~ 230 (372)
T 1g29_1 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVYDK 230 (372)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred EEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE-eCCHHHHHhC
Confidence 99999999999999999999988754 5699999999999999999999999999974 5887776543
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-44 Score=381.22 Aligned_cols=204 Identities=26% Similarity=0.401 Sum_probs=179.7
Q ss_pred EEEEEeeeeEeCCee--eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------
Q 006275 424 VVTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~--vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (652)
+|+++||+++|+++. +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++.
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 589999999998877 999999999999999999999999999999999999999999999997652
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p 562 (652)
.+|++|+ ..+++.+||.+|+.+..... ..+++.++++.+++ .+..++++.+|||||||||+|||||+.+|
T Consensus 83 ~ig~v~Q~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~~~~~~LSGGq~QRvalAraL~~~P 159 (353)
T 1oxx_K 83 KIGMVFQT--WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI-HHVLNHFPRELSGAQQQRVALARALVKDP 159 (353)
T ss_dssp CEEEEETT--SCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEeCC--CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 1345554 45778899999999864321 13457889999999 46789999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
++|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++.++.
T Consensus 160 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~~~ 231 (353)
T 1oxx_K 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLYDN 231 (353)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhC
Confidence 999999999999999999999988754 5699999999999999999999999999974 5888876543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-44 Score=382.01 Aligned_cols=204 Identities=28% Similarity=0.424 Sum_probs=176.2
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+|++|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 499999999999889999999999999999999999999999999999999999999999998762 245555
Q ss_pred cccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+ ..+++.+||.+|+.+..... ..+++.++++.+++ .+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 91 ~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 91 S--YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp --------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-GGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred C--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4 45778999999999864311 12457889999999 478899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++.++.
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~~~ 232 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVYLR 232 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHC
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHhC
Confidence 99999999999999988754 5699999999999999999999999999974 5887776543
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-44 Score=367.15 Aligned_cols=211 Identities=22% Similarity=0.362 Sum_probs=169.7
Q ss_pred CceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------e
Q 006275 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (652)
Q Consensus 96 ~~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~ 162 (652)
.+|+++|++|+|++ +++|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999976 6799999999999999999999999999999999999999999999988432 4
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|+|++|++.++. .||+||+....... ... +.+.... ....+.++
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~~~-~~~---~~~~~~~-------------------------------~~~~~~~~ 138 (271)
T 2ixe_A 95 VAAVGQEPLLFG-RSFRENIAYGLTRT-PTM---EEITAVA-------------------------------MESGAHDF 138 (271)
T ss_dssp EEEECSSCCCCS-SBHHHHHHTTCSSC-CCH---HHHHHHH-------------------------------HHHTCHHH
T ss_pred EEEEecCCcccc-ccHHHHHhhhcccC-ChH---HHHHHHH-------------------------------HHHhHHHH
Confidence 999999998765 69999986421100 000 0000000 01122344
Q ss_pred hhhc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 006275 243 MPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (652)
Q Consensus 243 l~~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~ 316 (652)
++.+ |+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .|+|||+||||+
T Consensus 139 l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 139 ISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp HHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred HHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 5555 553 456788999999999999999999999999999999999999999999988743 388999999999
Q ss_pred HHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+++. .||+|++|++|++. ..|+.+++.
T Consensus 218 ~~~~-~~d~v~~l~~G~i~-~~g~~~~l~ 244 (271)
T 2ixe_A 218 SLAE-RAHHILFLKEGSVC-EQGTHLQLM 244 (271)
T ss_dssp HHHT-TCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 9986 49999999999984 668876654
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=369.95 Aligned_cols=214 Identities=22% Similarity=0.357 Sum_probs=168.6
Q ss_pred CceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eEE
Q 006275 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i~ 164 (652)
..|+++||+|+|+ +.++|+||||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.+. .||
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 4599999999995 56799999999999999999999999999999999999999999999998532 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
||+|++.++ ..||+||+..+.... . .+.+...++.+ .+...+..+-.
T Consensus 132 ~v~Q~~~lf-~~Tv~eNi~~~~~~~-~----~~~~~~~~~~~---------------------------~l~~~i~~lp~ 178 (306)
T 3nh6_A 132 VVPQDTVLF-NDTIADNIRYGRVTA-G----NDEVEAAAQAA---------------------------GIHDAIMAFPE 178 (306)
T ss_dssp EECSSCCCC-SEEHHHHHHTTSTTC-C----HHHHHHHHHHH---------------------------TCHHHHHHSTT
T ss_pred EEecCCccC-cccHHHHHHhhcccC-C----HHHHHHHHHHh---------------------------CcHHHHHhccc
Confidence 999999875 679999996432110 0 00111111100 00111111101
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (652)
|+. ...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|+|+||||++.+..
T Consensus 179 --gl~-t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~- 254 (306)
T 3nh6_A 179 --GYR-TQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN- 254 (306)
T ss_dssp --GGG-CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-
T ss_pred --hhh-hHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-
Confidence 332 234566799999999999999999999999999999999999999999888754 47899999999999976
Q ss_pred cCeEEEEcCCeEEEecCChHHHHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
||+|++|++|++ ...|+++++...
T Consensus 255 aD~i~vl~~G~i-v~~G~~~el~~~ 278 (306)
T 3nh6_A 255 ADQILVIKDGCI-VERGRHEALLSR 278 (306)
T ss_dssp CSEEEEEETTEE-EEEECHHHHHHH
T ss_pred CCEEEEEECCEE-EEECCHHHHHhc
Confidence 999999999998 578988877643
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=364.14 Aligned_cols=207 Identities=28% Similarity=0.373 Sum_probs=178.6
Q ss_pred EEEEEeeeeEeC--C---eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------cc
Q 006275 424 VVTIKNLEFGYE--D---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y~--~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~ 491 (652)
+|+++||+++|+ + +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999997 4 67999999999999999999999999999999999999999999999998752 34
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh-----ccHHHHHHHHhhCCCCh-hhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~-----~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
|++|+.. ...+..|+.+|+.+.... ...+++.++++.+|+.. +..++++.+|||||||||+|||||+.+|+||
T Consensus 82 ~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPE-DQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGG-GGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccch-hhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 6666532 234578999999875321 12456788999999952 5789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++. ..|++++..+..
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~~ 229 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV-FDGTRMEFLEKY 229 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE-EEEEHHHHHHHS
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhcCc
Confidence 999999999999999999999765 469999999999999999999999999997 457777765443
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=370.33 Aligned_cols=205 Identities=21% Similarity=0.407 Sum_probs=173.7
Q ss_pred CcEEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------c
Q 006275 422 RSVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (652)
Q Consensus 422 ~~~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (652)
.+.|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 34599999999995 578999999999999999999999999999999999999999999999998763 3
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCCh----------hhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
+|++|+. .+ +..||++|+.++......+++.+.++.+++.. ....+.+.+|||||||||+|||||+.
T Consensus 131 ~~v~Q~~--~l-f~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 131 GVVPQDT--VL-FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp EEECSSC--CC-CSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEecCC--cc-CcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 4666653 34 46799999998765444555666666666531 12234557999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++.. ||||++|++|+|++ .|++++.++.
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~-~G~~~el~~~ 278 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVE-RGRHEALLSR 278 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEE-EECHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEE-ECCHHHHHhc
Confidence 99999999999999999999999999875 4699999999999987 99999999999984 5888877654
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=361.56 Aligned_cols=209 Identities=22% Similarity=0.385 Sum_probs=164.3
Q ss_pred ceEEEeEEEEe--CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEE
Q 006275 97 GVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~ 164 (652)
.|+++|++|+| +++++|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 48999999999 35679999999999999999999999999999999999999999999998743 2499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.++. .||+||+....... . . +.+.+.++. . .+.++++
T Consensus 87 ~v~Q~~~l~~-~tv~enl~~~~~~~-~-~---~~~~~~l~~--------------~-----------------~l~~~~~ 129 (247)
T 2ff7_A 87 VVLQDNVLLN-RSIIDNISLANPGM-S-V---EKVIYAAKL--------------A-----------------GAHDFIS 129 (247)
T ss_dssp EECSSCCCTT-SBHHHHHTTTCTTC-C-H---HHHHHHHHH--------------H-----------------TCHHHHH
T ss_pred EEeCCCcccc-ccHHHHHhccCCCC-C-H---HHHHHHHHH--------------h-----------------ChHHHHH
Confidence 9999998754 69999985321000 0 0 000000000 0 0111222
Q ss_pred hc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006275 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (652)
.+ |+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|+|||+||||++.+.
T Consensus 130 ~~~~gl~-~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 130 ELREGYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp TSTTGGG-CBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred hCcchhh-hhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 22 232 345666899999999999999999999999999999999999999999888753 4899999999999985
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.||+|++|++|++. +.|+.+++.
T Consensus 209 -~~d~v~~l~~G~i~-~~g~~~~l~ 231 (247)
T 2ff7_A 209 -NADRIIVMEKGKIV-EQGKHKELL 231 (247)
T ss_dssp -TSSEEEEEETTEEE-EEECHHHHH
T ss_pred -hCCEEEEEECCEEE-EECCHHHHH
Confidence 59999999999984 668776654
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=361.26 Aligned_cols=200 Identities=25% Similarity=0.371 Sum_probs=176.3
Q ss_pred EEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------cc-
Q 006275 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PN- 491 (652)
Q Consensus 424 ~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~- 491 (652)
+|+++|++++|++ +.+|+++||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|.++. .+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 4899999999987 789999999999 9999999999999999999999999 99999999997652 34
Q ss_pred eecccccccCCCCCCHHHHHHHhhh--hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
|++|+. .+ ..|+.||+.+... ....+.+.++++.+++..+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 79 ~v~Q~~--~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 154 (263)
T 2pjz_A 79 NLPEAY--EI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE 154 (263)
T ss_dssp CCGGGS--CT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred EeCCCC--cc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 555543 33 7899999987543 23355688999999995257899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcc-EEEEEeCCEEEeecCChhhHhh
Q 006275 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVN-RVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d-rvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||++||+.++..+.+.|+++..|||+||||++++..+|| ++++|++|++. ..|++++..+
T Consensus 155 Pts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~-~~g~~~~l~~ 215 (263)
T 2pjz_A 155 PFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ-GPISVSELLE 215 (263)
T ss_dssp TTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEE-EEEEHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEE-EecCHHHHHh
Confidence 999999999999999999886699999999999999999 99999999997 4588777653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=358.70 Aligned_cols=191 Identities=23% Similarity=0.307 Sum_probs=165.1
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----ceEEEEeccC
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----~~i~~v~Q~~ 170 (652)
++|+++|++++|++ ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|++|++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 46999999999988 99999999999999999999999999999999999999999999998854 3699999999
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc
Q 006275 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (652)
Q Consensus 171 ~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (652)
.+++..||+||+..... +. .. ... .+++.++++.+|+..
T Consensus 88 ~~~~~~tv~enl~~~~~---------------~~------------------------~~-~~~-~~~~~~~l~~~gl~~ 126 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVAS---------------LY------------------------GV-KVN-KNEIMDALESVEVLD 126 (214)
T ss_dssp CCCTTSBHHHHHHHHHH---------------HT------------------------TC-CCC-HHHHHHHHHHTTCCC
T ss_pred cCCCCCCHHHHHHHHHH---------------hc------------------------CC-chH-HHHHHHHHHHcCCCc
Confidence 88778899999853210 00 00 112 345667888999974
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEE
Q 006275 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (652)
Q Consensus 251 ~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~ii 327 (652)
. ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|+|||++|||++++..+||+|+
T Consensus 127 -~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 127 -L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp -T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred -C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 4 888999999999999999999999999999999999999999999887743 47899999999999999999987
Q ss_pred EEc
Q 006275 328 ETE 330 (652)
Q Consensus 328 ~l~ 330 (652)
.+.
T Consensus 205 ~~~ 207 (214)
T 1sgw_A 205 KYS 207 (214)
T ss_dssp GGB
T ss_pred EeC
Confidence 543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=362.65 Aligned_cols=199 Identities=23% Similarity=0.304 Sum_probs=170.8
Q ss_pred ceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------ceEE-
Q 006275 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIA- 164 (652)
Q Consensus 97 ~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------~~i~- 164 (652)
+|+++|++++|++ +++|+++||+|+ |++++|+||||||||||+++|+|++ |++|+|.++|.+ .+|+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 3799999999987 789999999999 9999999999999999999999999 999999998742 2699
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+ ..||+||+..... +. ....+++.++++
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~---------------~~----------------------------~~~~~~~~~~l~ 113 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEE---------------LK----------------------------GLDRDLFLEMLK 113 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHH---------------HT----------------------------CCCHHHHHHHHH
T ss_pred EeCCCCcc--CCcHHHHHHHhhh---------------hc----------------------------chHHHHHHHHHH
Confidence 99999876 7899999853100 00 011234567788
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcC
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d 324 (652)
.+|+..+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++...|||+||||++++..+||
T Consensus 114 ~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 114 ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKE 193 (263)
T ss_dssp HTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTT
T ss_pred HcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcC
Confidence 88986356789999999999999999999999999999999999999999999999987653499999999999999999
Q ss_pred -eEEEEcCCeEEEecCChHH
Q 006275 325 -KIVETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 325 -~ii~l~~G~~~~~~g~~~~ 343 (652)
++++|++|++. +.|+.++
T Consensus 194 ~~i~~l~~G~i~-~~g~~~~ 212 (263)
T 2pjz_A 194 YKAYFLVGNRLQ-GPISVSE 212 (263)
T ss_dssp SEEEEEETTEEE-EEEEHHH
T ss_pred ceEEEEECCEEE-EecCHHH
Confidence 99999999984 5676543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=357.32 Aligned_cols=201 Identities=25% Similarity=0.473 Sum_probs=169.8
Q ss_pred EEEEEeeeeEe--CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cc
Q 006275 424 VVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y--~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (652)
-|+++||+++| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 38999999999 3578999999999999999999999999999999999999999999999998763 23
Q ss_pred eecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhc-----------cCcCCCCHHHHHHHHHHHHHcc
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqrqrv~LAral~~ 560 (652)
|++|+. .++ ..|+.+|+.+.......+++.++++.+++. +..+ +++.+|||||||||+|||||+.
T Consensus 87 ~v~Q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 87 VVLQDN--VLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp EECSSC--CCT-TSBHHHHHTTTCTTCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEeCCC--ccc-cccHHHHHhccCCCCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 555543 344 469999998754333345566777777763 3333 4568999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|+||||||||++||+.++..+.+.|+++ +.|||+||||++.+.. ||+|++|++|+++. .|++++..+
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~~ 232 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE-QGKHKELLS 232 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEE-EECHHHHHT
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999865 5699999999999865 99999999999974 588877654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=352.79 Aligned_cols=207 Identities=25% Similarity=0.389 Sum_probs=161.7
Q ss_pred CceEEEeEEEEeC--CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccC
Q 006275 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (652)
Q Consensus 96 ~~i~v~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~ 173 (652)
..|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|+++++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~~~~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSCCCC
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCCccc
Confidence 3699999999995 46799999999999999999999999999999999999999999999986 699999999886
Q ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC-ccc
Q 006275 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADD 252 (652)
Q Consensus 174 ~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~-~~~ 252 (652)
+ .||+||+....... . . .....++. . . +.+.++.+... ...
T Consensus 82 ~-~tv~enl~~~~~~~-~--~---~~~~~~~~------------------------~---~----l~~~~~~~~~~~~~~ 123 (229)
T 2pze_A 82 P-GTIKENIIFGVSYD-E--Y---RYRSVIKA------------------------C---Q----LEEDISKFAEKDNIV 123 (229)
T ss_dssp S-BCHHHHHHTTSCCC-H--H---HHHHHHHH------------------------T---T----CHHHHTTSTTGGGSC
T ss_pred C-CCHHHHhhccCCcC-h--H---HHHHHHHH------------------------h---C----cHHHHHhCccccccc
Confidence 6 49999986421100 0 0 00000000 0 0 01112222110 012
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcCeEEEE
Q 006275 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~-L~~--~g~tvIivsHd~~~l~~~~d~ii~l 329 (652)
.++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+. +++ .++|||+||||++++. .||+|++|
T Consensus 124 ~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l 202 (229)
T 2pze_A 124 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILIL 202 (229)
T ss_dssp BCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEE
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEE
Confidence 3445789999999999999999999999999999999999999999986 433 4789999999999985 59999999
Q ss_pred cCCeEEEecCChHHHH
Q 006275 330 EMGVSRTYEGNYSQYV 345 (652)
Q Consensus 330 ~~G~~~~~~g~~~~~~ 345 (652)
++|++. +.|+++++.
T Consensus 203 ~~G~i~-~~g~~~~~~ 217 (229)
T 2pze_A 203 HEGSSY-FYGTFSELQ 217 (229)
T ss_dssp ETTEEE-EEECHHHHH
T ss_pred ECCEEE-EECCHHHHH
Confidence 999984 668776653
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-43 Score=357.37 Aligned_cols=198 Identities=25% Similarity=0.459 Sum_probs=172.7
Q ss_pred EEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCC
Q 006275 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (652)
Q Consensus 424 ~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 502 (652)
+|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+.. ..+|++|+. .++
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~---~i~~v~q~~--~~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ---SIGFVPQFF--SSP 78 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSCC--CCS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec---cEEEEcCCC--ccC
Confidence 699999999998 88899999999999999999999999999999999999999999998432 346777653 455
Q ss_pred CCCCHHHHHHHhhhh----------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 503 LDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 503 ~~~tv~e~~~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
+..|+.||+.+.... ...+.+.++++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||+
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 678999999875321 1124578899999994 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 573 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+ . ..|++++..
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~~ 216 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNIL 216 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHHh
Confidence 99999999999998765 5699999999999999999999999999 5 457776654
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=359.27 Aligned_cols=200 Identities=25% Similarity=0.338 Sum_probs=168.3
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEECceeccc-----------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVLP----------- 490 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~~----------- 490 (652)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 69999999999988999999999999999999999999999999999999 78999999999987621
Q ss_pred ceecccccccCCCCCCHHHHHHHhhh---h------ccHHHHHHHHhhCCCChhhhccCcCC-CCHHHHHHHHHHHHHcc
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAE---D------WRIDDIKGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVK 560 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~---~------~~~~~~~~~L~~~~l~~~~~~~~~~~-LSgGqrqrv~LAral~~ 560 (652)
++++|+ +.+++.+|+.+|+..... . .....+.++++.+|+..+..++++.+ |||||||||+|||||+.
T Consensus 83 ~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 83 FLAFQY--PVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp CCCCCC--CC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred EEeccC--CccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 234443 345677899999976431 1 01245778899999954678999999 99999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-ccEEEEEeCCEEEeecCChh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYN 626 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~drvi~l~~g~i~~~~g~~~ 626 (652)
+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+ ||||++|++|+++. .|+++
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE-EESHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE-EeCHH
Confidence 99999999999999999999999999875 35999999999999988 59999999999974 46665
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=359.11 Aligned_cols=197 Identities=28% Similarity=0.340 Sum_probs=170.4
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v 166 (652)
+|+++|++++ ++|+++||+|++|++++|+||||||||||+++|+|+++|+ |+|.++|.+ ..|+|+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 5899999987 6999999999999999999999999999999999999999 999998753 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++..||+||+...... . .. .+++.++++.+
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~------------------------------------------~-~~-~~~~~~~l~~~ 114 (249)
T 2qi9_C 79 SQQQTPPFATPVWHYLTLHQHD------------------------------------------K-TR-TELLNDVAGAL 114 (249)
T ss_dssp CSCCCCCTTCBHHHHHHTTCSS------------------------------------------T-TC-HHHHHHHHHHT
T ss_pred CCCCccCCCCcHHHHHHHhhcc------------------------------------------C-Cc-HHHHHHHHHHc
Confidence 9999887788999998521000 0 01 34456778888
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCC-------eEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCH
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPD-------LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDR 316 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~-------iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~ 316 (652)
|+. +..++++.+|||||||||+|||||+.+|+ +|||||||+|||+.+++.+.++|++ .|+|||+||||+
T Consensus 115 ~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 193 (249)
T 2qi9_C 115 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL 193 (249)
T ss_dssp TCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 985 57789999999999999999999999999 9999999999999999999888743 489999999999
Q ss_pred HHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 317 AFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+++..+||++++|++|++. +.|+++++
T Consensus 194 ~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 220 (249)
T 2qi9_C 194 NHTLRHAHRAWLLKGGKML-ASGRREEV 220 (249)
T ss_dssp HHHHHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred HHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999984 56765554
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-43 Score=359.58 Aligned_cols=205 Identities=26% Similarity=0.351 Sum_probs=173.2
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~---------- 489 (652)
.++|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 3479999999999988999999999999999999999999999999999999 4789999999998752
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhh------h---cc----HHHHHHHHhhCCCChhhhccCcC-CCCHHHHHHHHH
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAE------D---WR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAF 554 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~------~---~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqrqrv~L 554 (652)
.+|++|+ ..+++.+|+.+++..... . .. ...+.++++.+|+.....++++. +|||||||||+|
T Consensus 98 ~i~~v~Q~--~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 98 GIFMAFQY--PVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp TEEEECSS--CCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred CEEEEccC--ccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 1244443 356678899999875321 0 01 23577899999996456788887 599999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-ccEEEEEeCCEEEeecCChhhHh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+ |||+++|++|++.. .|++++..
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 253 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDFTLVK 253 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE-EECTTHHH
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE-EcCHHHHh
Confidence 99999999999999999999999999999999876 35999999999999886 89999999999974 57766543
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=356.26 Aligned_cols=204 Identities=19% Similarity=0.342 Sum_probs=163.5
Q ss_pred ceEEEeEEEEeC--CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC
Q 006275 97 GVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (652)
Q Consensus 97 ~i~v~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~ 174 (652)
+|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .|+|++|++.+ +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~~-~ 78 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQAWI-Q 78 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSCCC-C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCCcC-C
Confidence 589999999997 46799999999999999999999999999999999999999999999986 59999999875 6
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc----
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA---- 250 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~---- 250 (652)
..||+||+........ ...+.+ . ....+++.+++.+
T Consensus 79 ~~tv~enl~~~~~~~~---~~~~~~---~----------------------------------~~~~l~~~~~~~~~~~~ 118 (237)
T 2cbz_A 79 NDSLRENILFGCQLEE---PYYRSV---I----------------------------------QACALLPDLEILPSGDR 118 (237)
T ss_dssp SEEHHHHHHTTSCCCT---THHHHH---H----------------------------------HHTTCHHHHTTSTTGGG
T ss_pred CcCHHHHhhCccccCH---HHHHHH---H----------------------------------HHHhhHHHHHhcccccc
Confidence 7899999863210000 000000 0 0001112222211
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc-----cCCCeEEEEecCHHHHHhhcCe
Q 006275 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG-----KQDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 251 ~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~-----~~g~tvIivsHd~~~l~~~~d~ 325 (652)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|. ..|+|||+||||++.+. .||+
T Consensus 119 ~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~ 197 (237)
T 2cbz_A 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDV 197 (237)
T ss_dssp SEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSE
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCE
Confidence 12467789999999999999999999999999999999999999999999883 24889999999999984 7999
Q ss_pred EEEEcCCeEEEecCChHHHHH
Q 006275 326 IVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 326 ii~l~~G~~~~~~g~~~~~~~ 346 (652)
|++|++|++. ..|++.++..
T Consensus 198 v~~l~~G~i~-~~g~~~~~~~ 217 (237)
T 2cbz_A 198 IIVMSGGKIS-EMGSYQELLA 217 (237)
T ss_dssp EEEEETTEEE-EEECHHHHHH
T ss_pred EEEEeCCEEE-EeCCHHHHhh
Confidence 9999999984 6788776543
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-43 Score=360.07 Aligned_cols=203 Identities=22% Similarity=0.389 Sum_probs=170.3
Q ss_pred cEEEEEeeeeEeCC---eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
.+|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999986 78999999999999999999999999999999999999999999999998762
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhccH-H---------HHHHHHhhC--CCChhhhccCcCCCCHHHHHHHHHHHH
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRI-D---------DIKGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-~---------~~~~~L~~~--~l~~~~~~~~~~~LSgGqrqrv~LAra 557 (652)
.+|++|+. .++ ..||.||+.+....... . .+.++++.+ |+ ....++++.+|||||||||+||||
T Consensus 95 i~~v~Q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl-~~~~~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 95 VAAVGQEP--LLF-GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY-DTEVGETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp EEEECSSC--CCC-SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGG-GSBCCGGGTTSCHHHHHHHHHHHH
T ss_pred EEEEecCC--ccc-cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcch-hhhhcCCcCCCCHHHHHHHHHHHH
Confidence 23555543 344 46999999875321110 1 134456666 55 345688899999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++.. ||+|++|++|++.. .|++++..+.
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~~~ 246 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCE-QGTHLQLMER 246 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEE-EECHHHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999999999999876 3599999999999875 99999999999974 5887776554
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=360.37 Aligned_cols=202 Identities=20% Similarity=0.349 Sum_probs=163.2
Q ss_pred ceEEEeEEEEe-CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
+|+++|++|+| +++++|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 37999999999 56789999999999999999999999999999999999999999999998732 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.++. .||+||+........ ..+++.++++.
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~~~~--------------------------------------------~~~~~~~~l~~ 115 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLEGDY--------------------------------------------TDEDLWQVLDL 115 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTTSCS--------------------------------------------CHHHHHHHHHH
T ss_pred EcCCCcccc-ccHHHHHhhhccCCC--------------------------------------------CHHHHHHHHHH
Confidence 999998755 599999853210000 00112222333
Q ss_pred cCCCc----------ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 246 LGFTA----------DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 246 lgl~~----------~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+|+.. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||+||
T Consensus 116 ~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vt 195 (243)
T 1mv5_A 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195 (243)
T ss_dssp HTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEEC
T ss_pred hChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 33321 223456789999999999999999999999999999999999999888887643 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
||++.+. .||+|++|++|++ ...|+++++.
T Consensus 196 H~~~~~~-~~d~v~~l~~G~i-~~~g~~~~~~ 225 (243)
T 1mv5_A 196 HRLSTIV-DADKIYFIEKGQI-TGSGKHNELV 225 (243)
T ss_dssp CSHHHHH-HCSEEEEEETTEE-CCCSCHHHHH
T ss_pred CChHHHH-hCCEEEEEECCEE-EEeCCHHHHH
Confidence 9999985 5999999999998 4678876654
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=353.99 Aligned_cols=201 Identities=20% Similarity=0.395 Sum_probs=169.4
Q ss_pred EEEEEeeeeEe-CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cce
Q 006275 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (652)
Q Consensus 424 ~i~~~~v~~~y-~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (652)
+|+++||+++| +++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 48999999999 5678999999999999999999999999999999999999999999999998752 235
Q ss_pred ecccccccCCCCCCHHHHHHHh-hhhccHHHHHHHHhhCCCChhhh-----------ccCcCCCCHHHHHHHHHHHHHcc
Q 006275 493 FEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~-~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSgGqrqrv~LAral~~ 560 (652)
++|+. .++ ..|+.+|+.+. .......++.++++.+++. +.. ++++.+|||||||||+|||||+.
T Consensus 81 v~q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 81 VSQDS--AIM-AGTIRENLTYGLEGDYTDEDLWQVLDLAFAR-SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp ECCSS--CCC-CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCT-TTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EcCCC--ccc-cccHHHHHhhhccCCCCHHHHHHHHHHhChH-HHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 55543 344 36999999875 2223345577778887774 333 34567999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++. .||||++|++|++. ..|++++...
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 226 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999999998765 569999999999986 59999999999997 4688877654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=351.37 Aligned_cols=197 Identities=24% Similarity=0.402 Sum_probs=172.4
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------ccee
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (652)
+|+++||+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++. .+|+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 6999999986 6999999999999999999999999999999999999999 99999998752 2455
Q ss_pred cccccccCCCCCCHHHHHHHhhh-hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC-------eE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST-------LL 565 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~-------lL 565 (652)
+|+. .+++.+|+.||+.+... ....+.+.++++.+++ .+..++++.+|||||||||+|||||+.+|+ +|
T Consensus 79 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 79 SQQQ--TPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp CSCC--CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTC-GGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred CCCC--ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEE
Confidence 6543 45677899999987531 1125568889999999 467899999999999999999999999999 99
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|++++..
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 221 (249)
T 2qi9_C 156 LLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEVL 221 (249)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EEEHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999765 4699999999999999999999999999974 57776654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=353.41 Aligned_cols=211 Identities=21% Similarity=0.322 Sum_probs=161.4
Q ss_pred ceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 97 ~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
+|+++|++|+|++ +++|++|||+|++|++++|+||||||||||+++|+|+++| +|+|.++|.+ ..|
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 5999999999976 3699999999999999999999999999999999999987 8999998743 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|++.++ ..||+||+....... . .+.+.+.++. . .+...+..+
T Consensus 96 ~~v~Q~~~l~-~~tv~enl~~~~~~~-~----~~~~~~~l~~------------------------~---~l~~~~~~l- 141 (260)
T 2ghi_A 96 GIVPQDTILF-NETIKYNILYGKLDA-T----DEEVIKATKS------------------------A---QLYDFIEAL- 141 (260)
T ss_dssp EEECSSCCCC-SEEHHHHHHTTCTTC-C----HHHHHHHHHH------------------------T---TCHHHHHTS-
T ss_pred EEEcCCCccc-ccCHHHHHhccCCCC-C----HHHHHHHHHH------------------------h---CCHHHHHhc-
Confidence 9999999875 469999986321000 0 0000000000 0 000000000
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (652)
.. ++ ....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .++|||+||||++++.
T Consensus 142 ~~-~~-~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~- 218 (260)
T 2ghi_A 142 PK-KW-DTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS- 218 (260)
T ss_dssp TT-GG-GCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-
T ss_pred cc-cc-cccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-
Confidence 00 00 0123566899999999999999999999999999999999999999999887743 3789999999999985
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
.||+|++|++|++. ..|++.++..
T Consensus 219 ~~d~i~~l~~G~i~-~~g~~~~l~~ 242 (260)
T 2ghi_A 219 SAESIILLNKGKIV-EKGTHKDLLK 242 (260)
T ss_dssp TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred hCCEEEEEECCEEE-EECCHHHHHh
Confidence 59999999999984 6788776643
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=346.12 Aligned_cols=190 Identities=26% Similarity=0.400 Sum_probs=164.9
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----cceecccc
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQNQ 497 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----~~~~~~~~ 497 (652)
.+|+++||+++|++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~- 86 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE- 86 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS-
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC-
Confidence 47999999999988 9999999999999999999999999999999999999999999999998752 3455654
Q ss_pred cccCCCCCCHHHHHHHhhh----hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCC
Q 006275 498 AEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573 (652)
Q Consensus 498 ~~~~~~~~tv~e~~~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~ 573 (652)
..+++.+|+.||+.+... ....+.+.++++.+++. +. ++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 87 -~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~ 163 (214)
T 1sgw_A 87 -IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA 163 (214)
T ss_dssp -CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred -CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcC
Confidence 345677899999987532 12245678899999995 45 899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEE
Q 006275 574 LDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 574 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i 618 (652)
||+.++..+.+.|+++ +.|||+||||++++..+||+++++. |+|
T Consensus 164 LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 164 IDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYS-TKI 210 (214)
T ss_dssp SCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGB-C--
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC-Ccc
Confidence 9999999999999865 3599999999999999999987553 444
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=340.74 Aligned_cols=199 Identities=23% Similarity=0.363 Sum_probs=162.2
Q ss_pred cEEEEEeeeeEeC--CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceeccccccc
Q 006275 423 SVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500 (652)
Q Consensus 423 ~~i~~~~v~~~y~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 500 (652)
.+|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|++|+. .
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---i~~v~q~~--~ 79 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR---ISFCSQFS--W 79 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSC---EEEECSSC--C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCE---EEEEecCC--c
Confidence 4699999999995 478999999999999999999999999999999999999999999999983 56777653 3
Q ss_pred CCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChh----------hhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 501 ~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
+++ .|+.||+.+.... ......+.++.+++... ..++++.+|||||||||+|||||+.+|++||||||
T Consensus 80 ~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 80 IMP-GTIKENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp CCS-BCHHHHHHTTSCC-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred ccC-CCHHHHhhccCCc-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 444 5999999875321 11223334444444210 12335689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 571 TNHLDIPSKEMLEEA-ISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 571 t~~LD~~~~~~l~~~-l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|++||+.++..+.+. +.+. +.|||+||||++++.. ||++++|++|++.. .|++++..+
T Consensus 158 ts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~~~~ 218 (229)
T 2pze_A 158 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYF-YGTFSELQN 218 (229)
T ss_dssp TTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH-CSEEEEEETTEEEE-EECHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999997 4443 4699999999999864 99999999999974 578777654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=349.48 Aligned_cols=203 Identities=20% Similarity=0.352 Sum_probs=168.7
Q ss_pred cEEEEEeeeeEeCC---eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
.+|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 35999999999975 4699999999999999999999999999999999999987 899999998762
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChh----------hhccCcCCCCHHHHHHHHHHHHHc
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqrqrv~LAral~ 559 (652)
.+|++|+. .++ ..|+.+|+.+.......+++.+.++.+++... ..++++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDT--ILF-NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSC--CCC-SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCC--ccc-ccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 23555543 344 46999999875322334456677777776321 123567899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++. .|++++..+.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~~ 243 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLLKL 243 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEE-EECHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhc
Confidence 999999999999999999999999999876 459999999999986 499999999999974 5888776553
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=346.72 Aligned_cols=199 Identities=21% Similarity=0.360 Sum_probs=164.0
Q ss_pred EEEEEeeeeEeC--CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccC
Q 006275 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (652)
Q Consensus 424 ~i~~~~v~~~y~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 501 (652)
+|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|++|+. .
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~---i~~v~Q~~--~- 76 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS---VAYVPQQA--W- 76 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC---EEEECSSC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE---EEEEcCCC--c-
Confidence 489999999997 478999999999999999999999999999999999999999999999983 56777763 2
Q ss_pred CCCCCHHHHHHHhhhhccHHHHHHHHhhCCCC------h----hhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 502 DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK------A----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 502 ~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~------~----~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
.+..|+.+|+.+..... .....+.++.+++. . ...++++.+|||||||||+|||||+.+|+||||||||
T Consensus 77 ~~~~tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 77 IQNDSLRENILFGCQLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp CCSEEHHHHHHTTSCCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred CCCcCHHHHhhCccccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 35789999998753211 11122233333221 1 1246788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH---hc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 572 NHLDIPSKEMLEEAIS---EY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~---~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
++||+.++..+.+.|. +. +.|||+||||++++. .||++++|++|++. ..|++++..+.
T Consensus 156 s~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~~ 218 (237)
T 2cbz_A 156 SAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELLAR 218 (237)
T ss_dssp TTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHhhc
Confidence 9999999999999984 32 469999999999985 69999999999997 45888877654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=368.99 Aligned_cols=199 Identities=21% Similarity=0.358 Sum_probs=167.4
Q ss_pred CceEEEeEEEEe--CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 96 SGVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
..|+++|++|+| ++.++|++|||+|++||+++|+|||||||||||++|+|+++ ++|+|.++|.+ ..|
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 459999999999 56789999999999999999999999999999999999998 89999999853 359
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
|||+|++.+++ .||+||+..... ...+++.+++
T Consensus 97 g~v~Q~~~lf~-~tv~enl~~~~~----------------------------------------------~~~~~v~~~l 129 (390)
T 3gd7_A 97 GVIPQKVFIFS-GTFRKNLDPNAA----------------------------------------------HSDQEIWKVA 129 (390)
T ss_dssp EEESCCCCCCS-EEHHHHHCTTCC----------------------------------------------SCHHHHHHHH
T ss_pred EEEcCCcccCc-cCHHHHhhhccc----------------------------------------------cCHHHHHHHH
Confidence 99999998764 699999841100 0112344556
Q ss_pred hhcCCCcccccCCCCC-----------CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 006275 244 PELGFTADDGDRLVAS-----------FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~-----------LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvI 310 (652)
+.+|+. +..++++.+ |||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .++|+|
T Consensus 130 ~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi 208 (390)
T 3gd7_A 130 DEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVI 208 (390)
T ss_dssp HHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEE
T ss_pred HHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 666764 456676766 999999999999999999999999999999999999999998864 478999
Q ss_pred EEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 311 ivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+||||++.+ ..||||++|++|++. ..|++.++.
T Consensus 209 ~vtHd~e~~-~~aDri~vl~~G~i~-~~g~~~el~ 241 (390)
T 3gd7_A 209 LCEARIEAM-LECDQFLVIEENKVR-QYDSILELY 241 (390)
T ss_dssp EECSSSGGG-TTCSEEEEEETTEEE-EESSHHHHH
T ss_pred EEEcCHHHH-HhCCEEEEEECCEEE-EECCHHHHH
Confidence 999999876 569999999999984 668776654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=403.45 Aligned_cols=380 Identities=12% Similarity=0.090 Sum_probs=240.4
Q ss_pred ceEEEeEEEEeCCeeeeeeeeE-EEECCCEEEEECCCCccHHHHHHH--HHcCCCCCCcEEEECCCCc---------eEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRI--IAGQEEPDSGNVIKAKSNM---------KIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~--L~G~~~p~~G~i~~~~~~~---------~i~ 164 (652)
.++.+++.+..++.++|++|+| .|++|++++|+||||||||||+++ ++|+++|++|.|.++|... .+|
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 3455566665567889999999 999999999999999999999999 7899999999999876431 133
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.... ++. ...... .....++++
T Consensus 92 ~~~q~~~~~~------~l~---------------------------------------------~~~~~~-~~~~~~~l~ 119 (525)
T 1tf7_A 92 WDLAKLVDEG------KLF---------------------------------------------ILDASP-DPEGQEVVG 119 (525)
T ss_dssp CCHHHHHHTT------SEE---------------------------------------------EEECCC-CSSCCSCCS
T ss_pred CChHHhhccC------cEE---------------------------------------------EEecCc-ccchhhhhc
Confidence 3333321100 000 000000 000001222
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCC-----CCHHHHHHHHHHH---ccCCCeEEEEecCH
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-----LDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~-----LD~~~~~~l~~~L---~~~g~tvIivsHd~ 316 (652)
.+++. +..++.+..|||| +|++++|||||+. ||+..++.+.+++ ++.|+|||++||++
T Consensus 120 ~~~l~-~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~ 185 (525)
T 1tf7_A 120 GFDLS-ALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 185 (525)
T ss_dssp SHHHH-HHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred ccCHH-HHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 22221 2233344555555 5889999999984 6889988887765 44699999999999
Q ss_pred HHH---------HhhcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cccchh
Q 006275 317 AFL---------DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRAS 386 (652)
Q Consensus 317 ~~l---------~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 386 (652)
+.+ ..+||+|++|++|.. .|.....+. +..+++.. ..+
T Consensus 186 ~~~~~~~~~~i~~~laD~vi~L~~~~~---~G~~~r~l~--------------------------~~k~r~~~~~~~--- 233 (525)
T 1tf7_A 186 EEYGPIARYGVEEFVSDNVVILRNVLE---GERRRRTLE--------------------------ILKLRGTSHMKG--- 233 (525)
T ss_dssp SSSSCSSTTSCHHHHCSEEEEEEEECS---TTCCEEEEE--------------------------EEEETTSCCCCS---
T ss_pred CCccccccccceeeeeeEEEEEEEEcc---CCceeEEEE--------------------------EEECCCCCCCCc---
Confidence 984 566999999998432 121100000 00000000 000
Q ss_pred HHHHHHHHHHHHhhhcccc--cccceEEecCCCCCCCCcEEEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcH
Q 006275 387 SAEKKLERLQEEEQIEKPF--QRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGK 463 (652)
Q Consensus 387 ~~~~~l~~l~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGK 463 (652)
..+. ....... +|.......+.+++++++..|++ ..+|.+ .|++|++++|+|+|||||
T Consensus 234 ---------------~~~~~i~~~gi~v-~p~~~~~~~~~~~~~~l~~g~~~ld~vL~g---~i~~G~i~~i~G~~GsGK 294 (525)
T 1tf7_A 234 ---------------EYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGG---GFFKDSIILATGATGTGK 294 (525)
T ss_dssp ---------------EEEEEEETTEEEE-CCTTTCCSCCCCCCCEECCSCHHHHHHTTS---SEESSCEEEEEECTTSSH
T ss_pred ---------------eEEEEEcCCCEEE-EeccccccccccccceeecChHHHHHHhCC---CCCCCcEEEEEeCCCCCH
Confidence 0000 0000110 12111122334677888776653 234444 899999999999999999
Q ss_pred HHHHHHHhCCCCCCeeE--EEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCc
Q 006275 464 STLLKLIMGLEKPRGGE--VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541 (652)
Q Consensus 464 STLl~~l~g~~~p~~G~--i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~ 541 (652)
|||++.++|...|. |. +.+.+.+.. ..+..++... .+... + +...|+ ....+.++
T Consensus 295 STLl~~l~g~~~~~-G~~vi~~~~ee~~---------------~~l~~~~~~~--g~~~~---~-~~~~g~-~~~~~~~p 351 (525)
T 1tf7_A 295 TLLVSRFVENACAN-KERAILFAYEESR---------------AQLLRNAYSW--GMDFE---E-MERQNL-LKIVCAYP 351 (525)
T ss_dssp HHHHHHHHHHHHTT-TCCEEEEESSSCH---------------HHHHHHHHTT--SCCHH---H-HHHTTS-EEECCCCG
T ss_pred HHHHHHHHHHHHhC-CCCEEEEEEeCCH---------------HHHHHHHHHc--CCCHH---H-HHhCCC-EEEEEecc
Confidence 99999999999885 43 233221100 0111111110 11111 1 223343 23457788
Q ss_pred CCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH-----HHHHHHHHHHh---cCceEEEEecCH----------HHH
Q 006275 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-----SKEMLEEAISE---YKGTVITVSHDR----------YFV 603 (652)
Q Consensus 542 ~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~-----~~~~l~~~l~~---~~~tvi~vsHd~----------~~i 603 (652)
.+|||||+||+++|+++..+|++||+| ||++||.. .+..+.++++. .+.|||+|||+. ..+
T Consensus 352 ~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l 430 (525)
T 1tf7_A 352 ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHI 430 (525)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCC
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCccc
Confidence 999999999999999999999999999 99999999 88887777653 467999999999 788
Q ss_pred HhhccEEEEEeCCE
Q 006275 604 KQIVNRVVEVKGSN 617 (652)
Q Consensus 604 ~~~~drvi~l~~g~ 617 (652)
..+||+|++|++|+
T Consensus 431 ~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 431 STITDTIILLQYVE 444 (525)
T ss_dssp TTTCSEEEEEEEEE
T ss_pred ceeeeEEEEEEEEE
Confidence 88999999998765
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=361.76 Aligned_cols=206 Identities=17% Similarity=0.266 Sum_probs=176.1
Q ss_pred CCCCCcEEEEEeeeeEe--CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------
Q 006275 418 GRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------ 489 (652)
Q Consensus 418 ~~~~~~~i~~~~v~~~y--~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------ 489 (652)
.|+....|+++||+++| +++.+|+++||+|++||+++|+|||||||||||++|+|+++ ++|+|.++|.++.
T Consensus 13 ~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 13 IWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 35555679999999999 56789999999999999999999999999999999999998 8999999998763
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCC-----------CCHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-----------LSGGEKARLAF 554 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSgGqrqrv~L 554 (652)
.++++|+. .++ .+|+.+|+.... ....+++.++++.+++ .+..++++.+ |||||||||+|
T Consensus 92 ~rr~ig~v~Q~~--~lf-~~tv~enl~~~~-~~~~~~v~~~l~~~~L-~~~~~~~p~~l~~~i~~~g~~LSGGqrQRval 166 (390)
T 3gd7_A 92 WRKAFGVIPQKV--FIF-SGTFRKNLDPNA-AHSDQEIWKVADEVGL-RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCL 166 (390)
T ss_dssp HHHTEEEESCCC--CCC-SEEHHHHHCTTC-CSCHHHHHHHHHHTTC-HHHHTTSTTGGGCEECTTTTTSCHHHHHHHHH
T ss_pred HhCCEEEEcCCc--ccC-ccCHHHHhhhcc-ccCHHHHHHHHHHhCC-HHHHhhcccccccccccccccCCHHHHHHHHH
Confidence 23555543 344 479999997432 2345668889999999 4678899988 99999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||+.+|+||||||||++||+.++..+.+.|++. +.|+|+||||++.+. .||||++|++|+|.. .|++++.++.
T Consensus 167 ARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~-~g~~~el~~~ 243 (390)
T 3gd7_A 167 ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVRQ-YDSILELYHY 243 (390)
T ss_dssp HHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEEE-ESSHHHHHHC
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999999999999999875 459999999997664 599999999999984 5888876553
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=344.85 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=147.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCC
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~ 175 (652)
+.|+++|+++.+ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|++.+++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~l~~- 112 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNSWIMP- 112 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSCCCCS-
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCCccCc-
Confidence 459999999863 5799999999999999999999999999999999999999999999986 6999999998765
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC-ccccc
Q 006275 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADDGD 254 (652)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~-~~~~~ 254 (652)
.||+||+. .+.... . .+...++. . .+. +.+..+... ....+
T Consensus 113 ~tv~enl~-~~~~~~---~---~~~~~~~~------------------------~---~l~----~~l~~~~~~~~~~~~ 154 (290)
T 2bbs_A 113 GTIKENII-GVSYDE---Y---RYRSVIKA------------------------C---QLE----EDISKFAEKDNIVLG 154 (290)
T ss_dssp SBHHHHHH-TTCCCH---H---HHHHHHHH------------------------T---TCH----HHHHTSTTGGGCBC-
T ss_pred ccHHHHhh-Ccccch---H---HHHHHHHH------------------------h---ChH----HHHHhccccccchhc
Confidence 59999986 321000 0 00000000 0 001 112222110 01234
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH-cc--CCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-GK--QDVPMVIISHDRAFLDQLCTKIVETEM 331 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L-~~--~g~tvIivsHd~~~l~~~~d~ii~l~~ 331 (652)
+.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.+ ++ .|+|||+||||++++. .||+|++|++
T Consensus 155 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~ 233 (290)
T 2bbs_A 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE 233 (290)
T ss_dssp ---CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEET
T ss_pred CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 457899999999999999999999999999999999999999999863 32 4889999999999985 6999999999
Q ss_pred CeEEEecCChHHHH
Q 006275 332 GVSRTYEGNYSQYV 345 (652)
Q Consensus 332 G~~~~~~g~~~~~~ 345 (652)
|++. +.|+++++.
T Consensus 234 G~i~-~~g~~~~l~ 246 (290)
T 2bbs_A 234 GSSY-FYGTFSELQ 246 (290)
T ss_dssp TEEE-EEECHHHHH
T ss_pred CeEE-EeCCHHHHh
Confidence 9984 668877654
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=373.08 Aligned_cols=213 Identities=24% Similarity=0.349 Sum_probs=169.4
Q ss_pred CCceEEEeEEEEeC--CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------e
Q 006275 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (652)
Q Consensus 95 ~~~i~v~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~ 162 (652)
...|+++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 34699999999995 35799999999999999999999999999999999999999999999998643 5
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|+||+|+|+++ +.||+||+....... . .+++.++++.+ .+. +.
T Consensus 419 i~~v~Q~~~lf-~~tv~eni~~~~~~~-~----~~~~~~~~~~~---------------------------~~~----~~ 461 (587)
T 3qf4_A 419 ISAVPQETVLF-SGTIKENLKWGREDA-T----DDEIVEAAKIA---------------------------QIH----DF 461 (587)
T ss_dssp EEEECSSCCCC-SEEHHHHHTTTCSSC-C----HHHHHHHHHHT---------------------------TCH----HH
T ss_pred eEEECCCCcCc-CccHHHHHhccCCCC-C----HHHHHHHHHHh---------------------------CcH----HH
Confidence 99999999885 569999996321100 0 00111111100 011 11
Q ss_pred hhhc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHH
Q 006275 243 MPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~ 318 (652)
+..+ |+. ...++.+.+||||||||++|||||+.+|+||||||||++||+++++.+.+.|++ .|+|+|+||||++.
T Consensus 462 i~~l~~g~~-~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 462 IISLPEGYD-SRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT 540 (587)
T ss_dssp HHTSSSGGG-CEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHH
T ss_pred HHhcccchh-hHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHH
Confidence 2222 333 234566899999999999999999999999999999999999999999888753 58999999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
+. .||+|++|++|++ ...|+++++...
T Consensus 541 ~~-~~d~i~vl~~G~i-~~~g~~~el~~~ 567 (587)
T 3qf4_A 541 AL-LADKILVLHEGKV-AGFGTHKELLEH 567 (587)
T ss_dssp HT-TSSEEEEEETTEE-EEEECHHHHHHH
T ss_pred HH-hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 85 8999999999998 578998887653
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=375.19 Aligned_cols=214 Identities=26% Similarity=0.427 Sum_probs=166.5
Q ss_pred CCceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------e
Q 006275 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~ 162 (652)
...|+++|++|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 346999999999964 4699999999999999999999999999999999999999999999998532 5
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
||||+|+|+++ +.||+||+..+..... .+++.++++.+ .+...+..+
T Consensus 417 i~~v~Q~~~l~-~~tv~eni~~~~~~~~-----~~~~~~~~~~~---------------------------~~~~~~~~l 463 (578)
T 4a82_A 417 IGLVQQDNILF-SDTVKENILLGRPTAT-----DEEVVEAAKMA---------------------------NAHDFIMNL 463 (578)
T ss_dssp EEEECSSCCCC-SSBHHHHHGGGCSSCC-----HHHHHHHHHHT---------------------------TCHHHHHTS
T ss_pred eEEEeCCCccC-cccHHHHHhcCCCCCC-----HHHHHHHHHHh---------------------------CcHHHHHhC
Confidence 99999999885 4599999964321100 01111111110 001111111
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (652)
-. |+.+ ..++.+.+|||||||||+|||||+.+|++|||||||++||+++++.+.+.|++ .++|+|+||||++.+.
T Consensus 464 p~--g~~t-~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~ 540 (578)
T 4a82_A 464 PQ--GYDT-EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT 540 (578)
T ss_dssp TT--GGGC-BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT
T ss_pred cc--hhhh-hhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 00 2222 23445689999999999999999999999999999999999999999887743 5789999999999985
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
.||+|++|++|++ ...|+++++..
T Consensus 541 -~~d~i~~l~~G~i-~~~g~~~el~~ 564 (578)
T 4a82_A 541 -HADKIVVIENGHI-VETGTHRELIA 564 (578)
T ss_dssp -TCSEEEEEETTEE-EEEECHHHHHH
T ss_pred -cCCEEEEEECCEE-EEECCHHHHHh
Confidence 5999999999998 57798877654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=371.74 Aligned_cols=212 Identities=22% Similarity=0.381 Sum_probs=167.2
Q ss_pred CceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 46999999999975 679999999999999999999999999999999999999999999999853 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|+|.++. .||+||+..+...... .+++.+.++.+ .+. +.+
T Consensus 420 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~~~~~---------------------------~l~----~~~ 463 (582)
T 3b5x_A 420 ALVSQNVHLFN-DTIANNIAYAAEGEYT----REQIEQAARQA---------------------------HAM----EFI 463 (582)
T ss_pred EEEcCCCcccc-ccHHHHHhccCCCCCC----HHHHHHHHHHC---------------------------CCH----HHH
Confidence 99999998754 6999999642100000 01111111110 011 111
Q ss_pred hhc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006275 244 PEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (652)
Q Consensus 244 ~~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (652)
+.+ |+.+ ..++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .|+|+|+||||++.+
T Consensus 464 ~~~p~g~~t-~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 542 (582)
T 3b5x_A 464 ENMPQGLDT-VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTI 542 (582)
T ss_pred HhCcccccc-hhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 221 3432 23445789999999999999999999999999999999999999999888753 389999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
. .||+|++|++|++ ...|+++++..
T Consensus 543 ~-~~d~i~~l~~G~i-~~~g~~~~l~~ 567 (582)
T 3b5x_A 543 E-QADEILVVDEGEI-IERGRHADLLA 567 (582)
T ss_pred H-hCCEEEEEECCEE-EEECCHHHHHh
Confidence 6 6999999999998 46788777654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-40 Score=373.48 Aligned_cols=214 Identities=24% Similarity=0.360 Sum_probs=166.7
Q ss_pred CCceEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eE
Q 006275 95 SSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i 163 (652)
...|+++|++|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +|
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 346999999999974 5699999999999999999999999999999999999999999999998542 59
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|+|+++ +.||+||+..+.... . .+++.+.++ ...+...+..+-
T Consensus 432 ~~v~Q~~~lf-~~tv~eni~~~~~~~-~----~~~~~~~~~---------------------------~~~~~~~~~~~~ 478 (598)
T 3qf4_B 432 GIVLQDTILF-STTVKENLKYGNPGA-T----DEEIKEAAK---------------------------LTHSDHFIKHLP 478 (598)
T ss_dssp EEECTTCCCC-SSBHHHHHHSSSTTC-C----TTHHHHHTT---------------------------TTTCHHHHHTST
T ss_pred EEEeCCCccc-cccHHHHHhcCCCCC-C----HHHHHHHHH---------------------------HhCCHHHHHhcc
Confidence 9999999875 579999996321100 0 001111111 111111111110
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (652)
+ |+.+ ...+...+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+..
T Consensus 479 ~--g~~t-~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~ 555 (598)
T 3qf4_B 479 E--GYET-VLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN 555 (598)
T ss_dssp T--GGGC-BCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH
T ss_pred c--cccc-hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 0 2221 22233589999999999999999999999999999999999999999887753 58999999999999965
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
||+|++|++|++ ...|+++++..
T Consensus 556 -~d~i~~l~~G~i-~~~g~~~~l~~ 578 (598)
T 3qf4_B 556 -ADLIIVLRDGEI-VEMGKHDELIQ 578 (598)
T ss_dssp -CSEEEEECSSSE-EECSCHHHHHH
T ss_pred -CCEEEEEECCEE-EEECCHHHHHh
Confidence 999999999998 57899888764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=366.71 Aligned_cols=204 Identities=23% Similarity=0.425 Sum_probs=174.0
Q ss_pred CcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
...|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 457999999999974 67999999999999999999999999999999999999999999999998762
Q ss_pred cceecccccccCCCCCCHHHHHHHhh-hhccHHHHHHHHhhCCCChhhhc-----------cCcCCCCHHHHHHHHHHHH
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqrqrv~LAra 557 (652)
.++++|+ +.++ +.|+.||+..+. .....+++.++++.+++. +..+ .++.+||||||||++||||
T Consensus 419 i~~v~Q~--~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 419 FALVSQN--VHLF-NDTIANNIAYAAEGEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred eEEEcCC--Cccc-cccHHHHHhccCCCCCCHHHHHHHHHHCCCH-HHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence 2455554 3344 469999998864 334456678888888773 3333 3457999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|+++|++|||||||++||+.+++.+.+.|++. +.|+|+||||++.+. .||+|++|++|++.+ .|++++..+.
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~~ 568 (582)
T 3b5x_A 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-RGRHADLLAQ 568 (582)
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999999999999876 469999999999997 599999999999984 6888877653
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=366.50 Aligned_cols=204 Identities=25% Similarity=0.419 Sum_probs=174.5
Q ss_pred CcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
...|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 456999999999973 68999999999999999999999999999999999999999999999998763
Q ss_pred cceecccccccCCCCCCHHHHHHHhh-hhccHHHHHHHHhhCCCChhhhc-----------cCcCCCCHHHHHHHHHHHH
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqrqrv~LAra 557 (652)
.++++|+ +.++ +.|+.||+..+. .....+++.++++.+++. +..+ .++.+||||||||++||||
T Consensus 419 i~~v~Q~--~~l~-~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAra 494 (582)
T 3b60_A 419 VALVSQN--VHLF-NDTVANNIAYARTEEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_dssp EEEECSS--CCCC-SSBHHHHHHTTTTSCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred CeEEccC--CcCC-CCCHHHHHhccCCCCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 2455554 3344 469999999865 334566788888888873 3333 3457999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|+++|++|||||||++||+.++..+.+.|++. +.|+|+||||++.+. .||||++|++|++++ .|++++..+.
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~~ 568 (582)
T 3b60_A 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLAQ 568 (582)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHHH
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ecCHHHHHHc
Confidence 99999999999999999999999999999865 569999999999986 599999999999984 5888887654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=371.62 Aligned_cols=212 Identities=24% Similarity=0.401 Sum_probs=166.8
Q ss_pred CceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eE
Q 006275 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i 163 (652)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 46999999999974 6799999999999999999999999999999999999999999999998532 59
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|+|.++. .||+||+..+...... .+++.+.++.+ .+. +.+
T Consensus 420 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~l~~~---------------------------~l~----~~~ 463 (582)
T 3b60_A 420 ALVSQNVHLFN-DTVANNIAYARTEEYS----REQIEEAARMA---------------------------YAM----DFI 463 (582)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTTTSCCC----HHHHHHHHHTT---------------------------TCH----HHH
T ss_pred eEEccCCcCCC-CCHHHHHhccCCCCCC----HHHHHHHHHHc---------------------------CCH----HHH
Confidence 99999998854 6999999642100000 01111111111 011 111
Q ss_pred hhc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006275 244 PEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (652)
Q Consensus 244 ~~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (652)
+.+ |+.+ ..++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .|+|+|+||||++.+
T Consensus 464 ~~~p~g~~~-~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 542 (582)
T 3b60_A 464 NKMDNGLDT-IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542 (582)
T ss_dssp HHSTTGGGS-BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGT
T ss_pred Hhccccccc-cccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHH
Confidence 111 3322 33455789999999999999999999999999999999999999999887753 489999999999998
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
. .||+|++|++|++. ..|+++++..
T Consensus 543 ~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b60_A 543 E-QADEIVVVEDGIIV-ERGTHSELLA 567 (582)
T ss_dssp T-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred H-hCCEEEEEECCEEE-EecCHHHHHH
Confidence 5 69999999999984 6788777654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=370.39 Aligned_cols=204 Identities=21% Similarity=0.377 Sum_probs=173.9
Q ss_pred CcEEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------c
Q 006275 422 RSVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (652)
Q Consensus 422 ~~~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (652)
.+.|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 34599999999997 467999999999999999999999999999999999999999999999998863 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCc-----------CCCCHHHHHHHHHHHHHc
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV-----------SLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~-----------~~LSgGqrqrv~LAral~ 559 (652)
++++|+. .+ ++.|++||+..+......+++.+.++.+++. +..++.+ .+||||||||++|||||+
T Consensus 432 ~~v~Q~~--~l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 432 GIVLQDT--IL-FSTTVKENLKYGNPGATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp EEECTTC--CC-CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EEEeCCC--cc-ccccHHHHHhcCCCCCCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 4556543 34 4679999998765444455677777777763 3333333 689999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
++|+||||||||++||+.++..+.+.|++. +.|+|+||||++.+.. ||+|++|++|++++ .|++++.++.
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~~l~~~ 579 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-MGKHDELIQK 579 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-CSCHHHHHHT
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 999999999999999999999999999865 5699999999999976 99999999999984 6999887764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=365.68 Aligned_cols=205 Identities=23% Similarity=0.366 Sum_probs=172.9
Q ss_pred CcEEEEEeeeeEeC--CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
.+.|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 34699999999995 467999999999999999999999999999999999999999999999998763
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCCh----------hhhccCcCCCCHHHHHHHHHHHHHc
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqrqrv~LAral~ 559 (652)
.+|++|+. .+ ++.|++||+..+......+++.+.++..++.. ...++++.+||||||||++|||||+
T Consensus 419 i~~v~Q~~--~l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 419 ISAVPQET--VL-FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEEECSSC--CC-CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEECCCC--cC-cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 24556543 34 45699999987655444555556665555421 2235677899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
++|+||||||||++||+.+++.+.+.|++. +.|+|+||||++.+. .||||++|++|++++ .|++++..+.
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~~~ 567 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELLEH 567 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 999999999999999999999999999875 469999999999986 699999999999985 5888887654
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=366.22 Aligned_cols=204 Identities=26% Similarity=0.465 Sum_probs=172.9
Q ss_pred CcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
.+.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 345999999999964 57999999999999999999999999999999999999999999999998763
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhh-----------ccCcCCCCHHHHHHHHHHHHH
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSgGqrqrv~LAral 558 (652)
.++++|+ +.+ ++.|++||+..+......+++.+.++.+++. +.. ..+..+||||||||++|||||
T Consensus 417 i~~v~Q~--~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral 492 (578)
T 4a82_A 417 IGLVQQD--NIL-FSDTVKENILLGRPTATDEEVVEAAKMANAH-DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 492 (578)
T ss_dssp EEEECSS--CCC-CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCH-HHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred eEEEeCC--Ccc-CcccHHHHHhcCCCCCCHHHHHHHHHHhCcH-HHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHH
Confidence 2456654 334 4569999998875545556677777776653 222 234468999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+++|++|||||||++||+.++..+.+.+++. +.|+|+||||++++.. ||||++|++|++.+ .|++++..+.
T Consensus 493 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~el~~~ 565 (578)
T 4a82_A 493 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVE-TGTHRELIAK 565 (578)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEE-EECHHHHHHT
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999999999999865 4699999999999965 99999999999984 6888887654
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=332.04 Aligned_cols=196 Identities=22% Similarity=0.386 Sum_probs=147.5
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCC
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 502 (652)
++|+++||++.+ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|++|+. .++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~---i~~v~Q~~--~l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR---ISFCSQNS--WIM 111 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSC---EEEECSSC--CCC
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE---EEEEeCCC--ccC
Confidence 359999999864 67999999999999999999999999999999999999999999999983 56777753 344
Q ss_pred CCCCHHHHHHHhhhhccHHHHHHHHhhCCCChh----------hhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 503 ~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
+ .|+.+|+. ... .....+.+.++.+++... ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 112 ~-~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts 188 (290)
T 2bbs_A 112 P-GTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (290)
T ss_dssp S-SBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred c-ccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence 4 59999998 421 122223344444554211 1223457999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH-Hhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 573 HLDIPSKEMLEEAI-SEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 573 ~LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+||+.++..+.+.+ .+. +.|||+||||++++. .||++++|++|++. ..|++++...
T Consensus 189 ~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 247 (290)
T 2bbs_A 189 YLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQN 247 (290)
T ss_dssp TCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEE-EeCCHHHHhh
Confidence 99999999999974 443 469999999999986 59999999999997 4577776543
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=388.66 Aligned_cols=216 Identities=24% Similarity=0.406 Sum_probs=172.2
Q ss_pred CCceEEEeEEEEeCCe---eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------
Q 006275 95 SSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~---~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~---------- 161 (652)
...|+++||+|+|+++ ++|+||||+|++||++||||++|||||||+++|.|+++|++|+|.++|.+.
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred CCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh
Confidence 3469999999999653 699999999999999999999999999999999999999999999998643
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHH-HHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKE-EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (652)
+|+||||+|.+ ++.||+|||..+.+. +.. .+++.++++.+. +...+.
T Consensus 1154 ~i~~V~Qdp~L-F~gTIreNI~~gld~~~~s----d~ei~~Al~~a~---------------------------l~~~I~ 1201 (1321)
T 4f4c_A 1154 QIAIVSQEPTL-FDCSIAENIIYGLDPSSVT----MAQVEEAARLAN---------------------------IHNFIA 1201 (1321)
T ss_dssp TEEEECSSCCC-CSEEHHHHHSSSSCTTTSC----HHHHHHHHHHTT---------------------------CHHHHH
T ss_pred heEEECCCCEe-eCccHHHHHhccCCCCCCC----HHHHHHHHHHhC---------------------------ChHHHH
Confidence 69999999987 678999998643211 000 012222222111 111111
Q ss_pred HHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHH
Q 006275 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAF 318 (652)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~ 318 (652)
.+ + -|+.+..++ ...+||||||||++|||||+++|+|||||||||+||+++.+.+.+.|++ .++|+|+|+|+++.
T Consensus 1202 ~L-p-~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsT 1278 (1321)
T 4f4c_A 1202 EL-P-EGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNT 1278 (1321)
T ss_dssp TS-T-TTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSST
T ss_pred cC-c-CCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHH
Confidence 11 1 145444433 3689999999999999999999999999999999999999999999975 48999999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
+. .||+|++|++|++ +..|++++++..
T Consensus 1279 i~-~aD~I~Vld~G~I-vE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1279 VM-NADCIAVVSNGTI-IEKGTHTQLMSE 1305 (1321)
T ss_dssp TT-TCSEEEEESSSSE-EEEECHHHHHHC
T ss_pred HH-hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 95 5999999999998 578999888764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=350.02 Aligned_cols=202 Identities=28% Similarity=0.382 Sum_probs=170.1
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~ 174 (652)
...++++|+++.|++. .|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ ...|+|++|++...+
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---DLTVAYKPQYIKADY 360 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---CCCEEEECSSCCCCC
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---CceEEEEecCCcCCC
Confidence 4579999999999774 699999999999999999999999999999999999999999986 357999999987767
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (652)
..||.+++....... . ...+.+.++++.+|+. +..+
T Consensus 361 ~~tv~~~~~~~~~~~-------------~------------------------------~~~~~~~~~l~~~~l~-~~~~ 396 (538)
T 1yqt_A 361 EGTVYELLSKIDASK-------------L------------------------------NSNFYKTELLKPLGII-DLYD 396 (538)
T ss_dssp SSBHHHHHHHHHHHH-------------H------------------------------TCHHHHHHTTTTTTCG-GGTT
T ss_pred CCcHHHHHHhhhccC-------------C------------------------------CHHHHHHHHHHHcCCh-hhhc
Confidence 889977764210000 0 0023456788999996 6789
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEc
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ii~l~ 330 (652)
+++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||+||||++++..+||||++|+
T Consensus 397 ~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999888753 48999999999999999999999998
Q ss_pred C--CeEEEecCChHHHH
Q 006275 331 M--GVSRTYEGNYSQYV 345 (652)
Q Consensus 331 ~--G~~~~~~g~~~~~~ 345 (652)
+ |.+ ...|++.++.
T Consensus 477 ~~~~~~-~~~g~~~~~~ 492 (538)
T 1yqt_A 477 GEPGKY-GRALPPMGMR 492 (538)
T ss_dssp EETTTE-EEECCCEEHH
T ss_pred CCcceE-eecCCHHHHH
Confidence 5 443 3567765543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=352.67 Aligned_cols=202 Identities=28% Similarity=0.394 Sum_probs=169.8
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~ 174 (652)
...++++|++++|++. .|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ ..+|||++|++...+
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~---~~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVAYKPQYIKAEY 430 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---CCCEEEECSSCCCCC
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---eeEEEEEecCccCCC
Confidence 4579999999999764 689999999999999999999999999999999999999999986 357999999987767
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (652)
..||.+++....... . .....+.++++.+|+. +..+
T Consensus 431 ~~tv~e~~~~~~~~~-------------~------------------------------~~~~~~~~~l~~~~l~-~~~~ 466 (607)
T 3bk7_A 431 EGTVYELLSKIDSSK-------------L------------------------------NSNFYKTELLKPLGII-DLYD 466 (607)
T ss_dssp SSBHHHHHHHHHHHH-------------H------------------------------HCHHHHHHTHHHHTCT-TTTT
T ss_pred CCcHHHHHHhhhccC-------------C------------------------------CHHHHHHHHHHHcCCc-hHhc
Confidence 889988764210000 0 0013355678888986 6789
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ii~l~ 330 (652)
+++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||||++|+
T Consensus 467 ~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 9999999999999999999999999999999999999999999988875 358999999999999999999999998
Q ss_pred C--CeEEEecCChHHHH
Q 006275 331 M--GVSRTYEGNYSQYV 345 (652)
Q Consensus 331 ~--G~~~~~~g~~~~~~ 345 (652)
+ |.. ...|++.++.
T Consensus 547 ~~~g~~-~~~g~p~~~~ 562 (607)
T 3bk7_A 547 GEPGRH-GRALPPMGMR 562 (607)
T ss_dssp EETTTE-EEECCCEEHH
T ss_pred CCcceE-EecCCHHHHH
Confidence 5 443 3557766543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=345.87 Aligned_cols=192 Identities=25% Similarity=0.327 Sum_probs=163.8
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~ 174 (652)
...++++|+++.|++. .|+.+||+|++||++||+||||||||||+++|+|+++|++|+|.+.+ ..++|++|++...+
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK--QILSYKPQRIFPNY 343 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC--CCEEEECSSCCCCC
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--eeeEeechhccccc
Confidence 4579999999999874 57888999999999999999999999999999999999999999874 46999999977666
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (652)
..||++|+..... .. .. .....+.++++.+|+. +..+
T Consensus 344 ~~tv~~~l~~~~~-----------------~~-----------------------~~--~~~~~~~~~l~~~~l~-~~~~ 380 (538)
T 3ozx_A 344 DGTVQQYLENASK-----------------DA-----------------------LS--TSSWFFEEVTKRLNLH-RLLE 380 (538)
T ss_dssp SSBHHHHHHHHCS-----------------ST-----------------------TC--TTSHHHHHTTTTTTGG-GCTT
T ss_pred CCCHHHHHHHhhh-----------------hc-----------------------cc--hhHHHHHHHHHHcCCH-HHhc
Confidence 7899998742100 00 00 0012356778888986 6789
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ii~l~ 330 (652)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||||++|+
T Consensus 381 ~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 381 SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999888774 358999999999999999999999998
Q ss_pred CC
Q 006275 331 MG 332 (652)
Q Consensus 331 ~G 332 (652)
++
T Consensus 461 ~~ 462 (538)
T 3ozx_A 461 GE 462 (538)
T ss_dssp EE
T ss_pred CC
Confidence 63
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=370.08 Aligned_cols=205 Identities=25% Similarity=0.459 Sum_probs=171.5
Q ss_pred CcEEEEEeeeeEeCC---eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 422 RSVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
.+.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 345999999999974 46999999999999999999999999999999999999999999999998863
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCCh----------hhhccCcCCCCHHHHHHHHHHHHH
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.++++|++ .+ ++.|++||+..+......+++.+.++..++.. ......+.+||||||||++|||||
T Consensus 465 ~i~~v~Q~~--~l-~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 465 IIGVVSQEP--VL-FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp HEEEECSSC--CC-CSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH
T ss_pred heEEEcCCC--cc-CCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHH
Confidence 24666653 34 45699999998765555556666665555421 112345568999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+++|+|||||||||+||+++...+++.++.. +.|+|+||||++++.. ||+|++|++|++++ .|+++++++.
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~-~g~~~~l~~~ 614 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVE-QGNHDELMRE 614 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCC-EECHHHHHHT
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999999999999754 5699999999999977 99999999999974 6888876543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=342.19 Aligned_cols=197 Identities=31% Similarity=0.532 Sum_probs=165.3
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec----ccceecccccc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----LPNYFEQNQAE 499 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~----~~~~~~~~~~~ 499 (652)
.|...|++++|+++.+|+++||+|++|++++|+||||||||||+|+|+| |.| +|.+. ...|+.|+. .
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~-~ 505 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDI-D 505 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCC-C
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEcccc-c
Confidence 4666799999999999999999999999999999999999999999994 322 22221 112333321 1
Q ss_pred cCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q 006275 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579 (652)
Q Consensus 500 ~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~ 579 (652)
.+.+.+|+.+++....... ..++.++|+.+|+.....++++.+|||||||||+|||||+.+|+||||||||+|||+.++
T Consensus 506 ~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~ 584 (986)
T 2iw3_A 506 GTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNV 584 (986)
T ss_dssp CCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHH
T ss_pred ccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 3456789999997511111 456888999999965678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 580 EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 580 ~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
..+.++|++.+.|||+||||++++..+||+|++|++|++..+.|+++++.+
T Consensus 585 ~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 585 AWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999998667999999999999999999999999999767899888764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=334.74 Aligned_cols=198 Identities=23% Similarity=0.298 Sum_probs=163.9
Q ss_pred EeEEEEeCCe-eeeeeeeEEEECC-----CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC
Q 006275 101 ENISKSYKGV-TVLKDVTWEVKKG-----EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (652)
Q Consensus 101 ~~ls~~y~~~-~vL~~vsl~i~~G-----e~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~ 174 (652)
++++++|++. ++++++||++.+| |+++|+||||||||||+++|+|+++|++|+.. ....++|++|++...+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~---~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI---PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC---CSCCEEEECSSCCCCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc---cCCcEEEecccccccC
Confidence 6778899764 5899999999999 88999999999999999999999999999842 2457999999987667
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (652)
..||++++...+.. .......+.++++.+|+. +..+
T Consensus 427 ~~tv~e~~~~~~~~-------------------------------------------~~~~~~~~~~~l~~l~l~-~~~~ 462 (608)
T 3j16_B 427 PGTVRQLFFKKIRG-------------------------------------------QFLNPQFQTDVVKPLRID-DIID 462 (608)
T ss_dssp CSBHHHHHHHHCSS-------------------------------------------TTTSHHHHHHTHHHHTST-TTSS
T ss_pred CccHHHHHHHHhhc-------------------------------------------ccccHHHHHHHHHHcCCh-hhhc
Confidence 78999886421100 000012344677888886 6789
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ii~l~ 330 (652)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||||++++
T Consensus 463 ~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999998887764 358999999999999999999999998
Q ss_pred C--CeEEEecCChHHHHH
Q 006275 331 M--GVSRTYEGNYSQYVL 346 (652)
Q Consensus 331 ~--G~~~~~~g~~~~~~~ 346 (652)
+ |++ ...|++.+++.
T Consensus 543 ~~~g~~-~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKN-AHARAPESLLT 559 (608)
T ss_dssp EETTTE-EECCCCEEHHH
T ss_pred CCCCeE-EecCChHHHhh
Confidence 6 555 56787776654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-32 Score=316.16 Aligned_cols=194 Identities=23% Similarity=0.294 Sum_probs=132.7
Q ss_pred CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHH---------------------HHHhCCCCCCe-------eEEEECcee
Q 006275 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLL---------------------KLIMGLEKPRG-------GEVLLGEHN 487 (652)
Q Consensus 436 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl---------------------~~l~g~~~p~~-------G~i~~~g~~ 487 (652)
...+|+||||+|++||++||+||||||||||+ +++.|+.+|+. |.|.+++.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 89999999984 455555543
Q ss_pred cc------cceeccc-----------------ccccCCCCCCHHHHHHHhhhh------cc--------HHHHHHHHhhC
Q 006275 488 VL------PNYFEQN-----------------QAEALDLDKTVLETVAEAAED------WR--------IDDIKGLLGRC 530 (652)
Q Consensus 488 ~~------~~~~~~~-----------------~~~~~~~~~tv~e~~~~~~~~------~~--------~~~~~~~L~~~ 530 (652)
.. .+++.|. +.....+.+|+.+|+...... .. ..+..+.++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 21 1111111 111123457888887653210 00 01122458889
Q ss_pred CCChhhhccCcCCCCHHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHh
Q 006275 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQ 605 (652)
Q Consensus 531 ~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~ 605 (652)
|+.....++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..+.++|+++ +.|||+||||++++.
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~- 268 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML- 268 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-
Confidence 986444689999999999999999999999998 99999999999999999999998765 569999999999876
Q ss_pred hccEEEEE------eCCEEEeecCChhhHhhh
Q 006275 606 IVNRVVEV------KGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 606 ~~drvi~l------~~g~i~~~~g~~~~~~~~ 631 (652)
.||||++| ++|+++ +.|++++..+.
T Consensus 269 ~~d~ii~l~~g~~~~~G~i~-~~g~~~~~~~~ 299 (670)
T 3ux8_A 269 AADYLIDIGPGAGIHGGEVV-AAGTPEEVMND 299 (670)
T ss_dssp HCSEEEEECSSSGGGCCSEE-EEECHHHHHTC
T ss_pred hCCEEEEecccccccCCEEE-EecCHHHHhcC
Confidence 59999999 889987 46888776543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=287.93 Aligned_cols=240 Identities=14% Similarity=0.154 Sum_probs=151.0
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHH-HHcC-------CCCCCcEEE-----------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI-IAGQ-------EEPDSGNVI----------- 155 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~-L~G~-------~~p~~G~i~----------- 155 (652)
...|+++|+++ .+|+||||+|++|++++|+|+||||||||+++ |+|. .+|+.|.+.
T Consensus 500 ~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 500 AGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp SCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred CceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 35699999986 26999999999999999999999999999996 7644 456666652
Q ss_pred -ECC---CCceEEEEeccCccC-CCC------CHHHHHHHhhHHHHHHHHHHHHHH-H--H-------Hhhh--------
Q 006275 156 -KAK---SNMKIAFLSQEFEVS-MSR------TVREEFMSAFKEEMEIAGKLERVQ-K--A-------LESA-------- 206 (652)
Q Consensus 156 -~~~---~~~~i~~v~Q~~~~~-~~~------Tv~e~i~~~~~~~~~~~~~~~~~~-~--~-------~~~~-------- 206 (652)
..| .-.++.++.|.+.-. +.. .+++.+...|..... .+...+. . . ++.|
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~--~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPL--AKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHH--HHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChH--HHhcCCccccccccccccccccccCCCccch
Confidence 222 112366888876321 111 233444322211000 0000000 0 0 0000
Q ss_pred -----cc-------------hh---------HHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCC
Q 006275 207 -----VD-------------DM---------DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (652)
Q Consensus 207 -----~~-------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~ 259 (652)
.. .. ..+.+.+.. ........+.......++.++++.+|+.....++++.+
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~l--tv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~ 730 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLAL--TVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATE 730 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTC--BHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGG
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhc--cHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCccc
Confidence 00 00 000000000 00000011111111246778999999974456889999
Q ss_pred CChHHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEE----
Q 006275 260 FSSGWQMRMSLGKILLQD---PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET---- 329 (652)
Q Consensus 260 LSGGqkqRv~LAraL~~~---p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l---- 329 (652)
|||||||||+||++|+.+ |+||||||||+|||+..++.|.++|+ +.|.|||+||||++++ ..||+|++|
T Consensus 731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~ 809 (842)
T 2vf7_A 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGA 809 (842)
T ss_dssp CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCC
Confidence 999999999999999996 79999999999999999999988764 4699999999999999 789999999
Q ss_pred --cCCeEEEecCChHHHH
Q 006275 330 --EMGVSRTYEGNYSQYV 345 (652)
Q Consensus 330 --~~G~~~~~~g~~~~~~ 345 (652)
++|++ .+.|+++++.
T Consensus 810 g~~~G~I-v~~g~~~el~ 826 (842)
T 2vf7_A 810 GEDGGRL-VAQGTPAEVA 826 (842)
T ss_dssp GGGCCSE-EEEECHHHHT
T ss_pred CCCCCEE-EEEcCHHHHH
Confidence 57777 5678877654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-32 Score=300.78 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=161.9
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-E-EEECceec-ccceeccccc
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-E-VLLGEHNV-LPNYFEQNQA 498 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G-~-i~~~g~~~-~~~~~~~~~~ 498 (652)
.++++++||++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |.++|..- ..++++|...
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 45688999999985 79999999999999999999999999999999999999 8 99987321 1235555432
Q ss_pred c-cCCCCCCHHHHHHHhhhh----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHH--HccCCCe----EEE
Q 006275 499 E-ALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF--MVKPSTL----LVL 567 (652)
Q Consensus 499 ~-~~~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAra--l~~~p~l----LlL 567 (652)
. ......++.+|+ +.... .....+..++..+|+. +..+ +.+|||||||||+|||| |+.+|++ |||
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~-~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLE-RINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSS-SGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCC-cccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 1 123346777777 43211 1112345677888885 3334 78999999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHHhcCceEEEEecCHH------HHHhhccE-----EEEEe-CCEEEeecCChhhHhhhcCC
Q 006275 568 DE-PTNHLDIPSKEMLEEAISEYKGTVITVSHDRY------FVKQIVNR-----VVEVK-GSNLQDYAGDYNVCFTSFSP 634 (652)
Q Consensus 568 DE-Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~------~i~~~~dr-----vi~l~-~g~i~~~~g~~~~~~~~~~~ 634 (652)
|| ||++||+. ...+.+++++++.|+|+|+||.+ ++..+||| |++|+ +|+++ .|+.++..+..
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~~~~-- 340 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKRSLQ-- 340 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHHHHH--
T ss_pred eCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHhhhh--
Confidence 99 99999999 88888999988889999999987 88899999 99999 99987 57776543221
Q ss_pred cccccchhHHHh
Q 006275 635 FLLVPLRSYFFK 646 (652)
Q Consensus 635 ~~~~~~~~~~~~ 646 (652)
...++.||+.
T Consensus 341 --~~~i~~~f~g 350 (460)
T 2npi_A 341 --RTSIREYFYG 350 (460)
T ss_dssp --HHHHHHHHHC
T ss_pred --HHHHHHHhCC
Confidence 2235666654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-32 Score=302.34 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=157.5
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc-E-EEECCC-CceEEEEeccCc
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-N-VIKAKS-NMKIAFLSQEFE 171 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G-~-i~~~~~-~~~i~~v~Q~~~ 171 (652)
.++++++|++|.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |.+++. ...++|++|++.
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 45688999999995 79999999999999999999999999999999999999 8 998863 346999999974
Q ss_pred c---CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 172 V---SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 172 ~---~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
+ ....|+++|+ ..... ........++.+++..+|+
T Consensus 190 l~~~~~~~tv~eni-~~~~~-----------------------------------------~~~~~~~~~~~~ll~~~gl 227 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSL-----------------------------------------TSGATLLHNKQPMVKNFGL 227 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBC-----------------------------------------BSSCCSSCCBCCEECCCCS
T ss_pred hcccccccchhhhh-ccccc-----------------------------------------ccCcchHHHHHHHHHHhCC
Confidence 3 3446888776 21000 0000001123456788888
Q ss_pred CcccccCCCCCCChHHHHHHHHHHH--HccCCCe----EEEeC-CCCCCCHHHHHHHHHHHccCCCeEEEEecCHH----
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKI--LLQDPDL----LLLDE-PTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA---- 317 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAra--L~~~p~i----LLLDE-Pts~LD~~~~~~l~~~L~~~g~tvIivsHd~~---- 317 (652)
.. ..+ +.+|||||||||+|||| |+.+|++ ||||| ||++||+. .+.|.+++++.++|+|+|+|+.+
T Consensus 228 ~~-~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~ 303 (460)
T 2npi_A 228 ER-INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLW 303 (460)
T ss_dssp SS-GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHH
T ss_pred Cc-ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhh
Confidence 63 333 78999999999999999 9999999 99999 99999999 88888888888999999999987
Q ss_pred --HHHhhcCe-----EEEEc-CCeEEEecCChHH
Q 006275 318 --FLDQLCTK-----IVETE-MGVSRTYEGNYSQ 343 (652)
Q Consensus 318 --~l~~~~d~-----ii~l~-~G~~~~~~g~~~~ 343 (652)
++..+||+ |++|+ +|++. .|+..+
T Consensus 304 ~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~ 335 (460)
T 2npi_A 304 EKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVY 335 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHH
T ss_pred HHHHHHhcccccCCEEEEEeCCCcEE--ECCHHH
Confidence 78899999 99999 89874 677544
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=265.15 Aligned_cols=222 Identities=14% Similarity=0.134 Sum_probs=141.6
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC--------------------------------------CCCc
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--------------------------------------PDSG 152 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~--------------------------------------p~~G 152 (652)
.++++++|++++| +++|+|+|||||||||++|.++.. +..|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 6899999999999 999999999999999999977764 3467
Q ss_pred EEEECCCCc-----------eEEEEeccCccCCCCCHHHH--HHHhhHHH--HHHHHHHHHHHHHH---hhhcchh----
Q 006275 153 NVIKAKSNM-----------KIAFLSQEFEVSMSRTVREE--FMSAFKEE--MEIAGKLERVQKAL---ESAVDDM---- 210 (652)
Q Consensus 153 ~i~~~~~~~-----------~i~~v~Q~~~~~~~~Tv~e~--i~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~---- 210 (652)
++.++|... .+++++|+..+... +..+. ++..+... ......+..+.+.. .......
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 888887542 28999998755432 22211 11111000 00000011111111 0000000
Q ss_pred -------HHHHhhHHHHHHH---HHHHHhCChhcHHHHHHHHhhhcCCCcccc----------------------c----
Q 006275 211 -------DLMGRLLDEFDLL---QRKAQAVNLDTLDAKVSKLMPELGFTADDG----------------------D---- 254 (652)
Q Consensus 211 -------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~----------------------~---- 254 (652)
+.+..+.++.... ...........+...+.+.+..+++..... .
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0000011111000 000000112344566777777777642100 0
Q ss_pred ---CCCCC-CChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006275 255 ---RLVAS-FSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 255 ---~~~~~-LSGGqkqRv~LAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (652)
+++.. |||||||||+||++|+.+| ++|||||||+|||+.++.+|.++|++ .|+|||+|||+++++ .+||++
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i 365 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHH 365 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeE
Confidence 23333 6999999999999999999 99999999999999999999998865 379999999999887 679999
Q ss_pred EEE----cCCeEE
Q 006275 327 VET----EMGVSR 335 (652)
Q Consensus 327 i~l----~~G~~~ 335 (652)
++| ++|++.
T Consensus 366 ~~l~k~~~~G~~~ 378 (415)
T 4aby_A 366 YKVEKQVEDGRTV 378 (415)
T ss_dssp EEEEEEEETTEEE
T ss_pred EEEEEeccCCceE
Confidence 999 888874
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-28 Score=283.87 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=93.5
Q ss_pred HHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 006275 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (652)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p---~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvI 310 (652)
.+..++|..+|+.....++++.+|||||||||+|||||+.+| +||||||||+|||+.+++.|.++|+ +.|.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 456678899999655568889999999999999999999876 6999999999999999999988764 4699999
Q ss_pred EEecCHHHHHhhcCeEEEE------cCCeEEEecCChHHHHH
Q 006275 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 311 ivsHd~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~ 346 (652)
+||||++++. .||+|++| ++|++ ++.|+++++..
T Consensus 863 vI~HdL~~i~-~ADrIivLgp~gg~~~G~I-v~~Gtpeel~~ 902 (916)
T 3pih_A 863 VIEHNLDVIK-NADHIIDLGPEGGKEGGYI-VATGTPEEIAK 902 (916)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSGGGCCEE-EEEESHHHHHS
T ss_pred EEeCCHHHHH-hCCEEEEecCCCCCCCCEE-EEEcCHHHHHh
Confidence 9999999985 59999999 77776 58898877653
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-28 Score=283.87 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=92.6
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEE
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p---~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIi 311 (652)
++.++++.+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+ +.|.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999744678999999999999999999999875 9999999999999999999988764 46999999
Q ss_pred EecCHHHHHhhcCeEEEE------cCCeEEEecCChHHHHH
Q 006275 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 312 vsHd~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~ 346 (652)
||||++++ ..||+|++| ++|++ .+.|+++++..
T Consensus 904 isHdl~~i-~~aDrIivL~p~gG~~~G~I-v~~g~~~el~~ 942 (972)
T 2r6f_A 904 IEHNLDVI-KTADYIIDLGPEGGDRGGQI-VAVGTPEEVAE 942 (972)
T ss_dssp ECCCHHHH-TTCSEEEEECSSSTTSCCSE-EEEESHHHHHT
T ss_pred EcCCHHHH-HhCCEEEEEcCCCCCCCCEE-EEecCHHHHHh
Confidence 99999998 589999999 56776 56788777643
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=258.73 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEE----eC
Q 006275 544 LSGGEKARLAFCKFMVKPS--TLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEV----KG 615 (652)
Q Consensus 544 LSgGqrqrv~LAral~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l----~~ 615 (652)
|||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++. .|||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 9999999999999999999999999874 6999999999887 579999999 89
Q ss_pred CEEEe
Q 006275 616 SNLQD 620 (652)
Q Consensus 616 g~i~~ 620 (652)
|++..
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 98753
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-26 Score=243.25 Aligned_cols=82 Identities=23% Similarity=0.317 Sum_probs=74.6
Q ss_pred ccCCCCCCChHHHHHHHHHHHHc------cCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006275 253 GDRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~------~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (652)
.++++.+|||||||||+||+||+ .+|++|||||||+|||+.++.++.++|+ +.|.|||+||||+++ ...|
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTC
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhC
Confidence 35788999999999999999999 7999999999999999999999988764 458999999999998 4789
Q ss_pred CeEEEEcCCeEE
Q 006275 324 TKIVETEMGVSR 335 (652)
Q Consensus 324 d~ii~l~~G~~~ 335 (652)
|+|++|++|++.
T Consensus 352 d~~~~l~~G~i~ 363 (365)
T 3qf7_A 352 DRKLRITGGVVV 363 (365)
T ss_dssp SCEEEEETTEEC
T ss_pred CEEEEEECCEEE
Confidence 999999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-28 Score=240.41 Aligned_cols=144 Identities=22% Similarity=0.234 Sum_probs=96.5
Q ss_pred EeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC-------CCCceEEEEeccCccCCCCCH
Q 006275 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-------KSNMKIAFLSQEFEVSMSRTV 178 (652)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~-------~~~~~i~~v~Q~~~~~~~~Tv 178 (652)
+|+++.+|++| ++|++++|+||||||||||+++|+|+ +|++|+|... .....|||++|++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 35566789986 89999999999999999999999999 9999988431 0123588888875
Q ss_pred HHHH-HHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCC
Q 006275 179 REEF-MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (652)
Q Consensus 179 ~e~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (652)
+||+ .. +... ...+.. ... ..++.++++. |+
T Consensus 76 ~enl~~~-~~~~----------~~~~~~-----------------------~~~----~~~~~~~l~~-gl--------- 107 (208)
T 3b85_A 76 NEKIDPY-LRPL----------HDALRD-----------------------MVE----PEVIPKLMEA-GI--------- 107 (208)
T ss_dssp ----CTT-THHH----------HHHHTT-----------------------TSC----TTHHHHHHHT-TS---------
T ss_pred HHHHHHH-HHHH----------HHHHHH-----------------------hcc----HHHHHHHHHh-CC---------
Confidence 3444 11 0000 000000 000 1123334333 32
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (652)
||||||+|||||+.+|++|||||||++ ++..+.++|++ .|+||| ||||++++.
T Consensus 108 -----Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 108 -----VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp -----EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred -----chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence 999999999999999999999999999 78888887764 478999 999998774
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-25 Score=235.99 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=75.7
Q ss_pred ccCCCCCCChHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006275 253 GDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~----~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (652)
.++++.+||||||||++||+||+ .+|++|||||||++||+..++.+.++|++ .+.|||+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 56678999999999999999997 68999999999999999999999988754 3789999999975 45789987
Q ss_pred --EEEcCCeEEEecCChHH
Q 006275 327 --VETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 327 --i~l~~G~~~~~~g~~~~ 343 (652)
+++.+|.......+.++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88899987666555444
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-25 Score=216.34 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=97.1
Q ss_pred eeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC-CCCHHHHHHHhhHHHHHHH
Q 006275 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM-SRTVREEFMSAFKEEMEIA 193 (652)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~-~~Tv~e~i~~~~~~~~~~~ 193 (652)
||||+|++|++++|+||||||||||++++.+- ...++. +.-.++++|++.... ..++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~~~-d~~~g~~~~~~~~~~~~~~~~~~~~---------- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVISS-DFCRGLMSDDENDQTVTGAAFDVLH---------- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEEEH-HHHHHHHCSSTTCGGGHHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEEcc-HHHHHHhcCcccchhhHHHHHHHHH----------
Confidence 68999999999999999999999999986532 111211 111255566542110 001111100
Q ss_pred HHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 006275 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273 (652)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAra 273 (652)
... ......|.. ...+. ....|||||||++||||
T Consensus 64 -------------------------------------------~~~-~~~~~~g~~-~~~~~-~~~~s~g~~qrv~iAra 97 (171)
T 4gp7_A 64 -------------------------------------------YIV-SKRLQLGKL-TVVDA-TNVQESARKPLIEMAKD 97 (171)
T ss_dssp -------------------------------------------HHH-HHHHHTTCC-EEEES-CCCSHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHH-HHHHhCCCe-EEEEC-CCCCHHHHHHHHHHHHH
Confidence 000 001112332 22233 35669999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHH----------------HHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006275 274 LLQDPDLLLLDEPTNHLDLD----------------TIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 274 L~~~p~iLLLDEPts~LD~~----------------~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (652)
++.+|++|+|||||++||+. ....+.+.|+ +.|.|+|+||||++++..
T Consensus 98 l~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 98 YHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp TTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred cCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 99999999999999999999 5577777753 359999999999999965
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-25 Score=213.60 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=98.5
Q ss_pred ceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHH
Q 006275 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (652)
Q Consensus 442 ~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~ 521 (652)
|+||+|++||+++|+||||||||||++++.+-. ..+.. +...+++.++..... ...++++++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~~~~-d~~~g~~~~~~~~~~-~~~~~~~~~~~-------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EVISS-DFCRGLMSDDENDQT-VTGAAFDVLHY-------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GEEEH-HHHHHHHCSSTTCGG-GHHHHHHHHHH--------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eEEcc-HHHHHHhcCcccchh-hHHHHHHHHHH--------
Confidence 689999999999999999999999999865321 11211 111233333221110 00111121111
Q ss_pred HHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH----------------HHHHHHHH
Q 006275 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP----------------SKEMLEEA 585 (652)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~----------------~~~~l~~~ 585 (652)
........+... . .......|+|||||++||||++.+|++|+|||||++||+. ....+.+.
T Consensus 65 -~~~~~~~~g~~~-~-~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~ 141 (171)
T 4gp7_A 65 -IVSKRLQLGKLT-V-VDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKS 141 (171)
T ss_dssp -HHHHHHHTTCCE-E-EESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHhCCCeE-E-EECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhh
Confidence 111122334321 2 2344567999999999999999999999999999999999 55777887
Q ss_pred HHhc---CceEEEEecCHHHHHhhccEE
Q 006275 586 ISEY---KGTVITVSHDRYFVKQIVNRV 610 (652)
Q Consensus 586 l~~~---~~tvi~vsHd~~~i~~~~drv 610 (652)
|++. +.|+|+||||++++.. ++++
T Consensus 142 l~~l~~~g~tvi~vtH~~~~~~~-~~~~ 168 (171)
T 4gp7_A 142 IKGLQREGFRYVYILNSPEEVEE-VVFE 168 (171)
T ss_dssp STTHHHHTCSEEEEECSHHHHHH-EEEE
T ss_pred hhhHHhcCCcEEEEeCCHHHhhh-hhhc
Confidence 5433 5699999999999976 4443
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-24 Score=226.59 Aligned_cols=81 Identities=26% Similarity=0.434 Sum_probs=75.0
Q ss_pred ccCcCCCCHHHHHHHHHHHHHc------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcc
Q 006275 538 DRKVSLLSGGEKARLAFCKFMV------KPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVN 608 (652)
Q Consensus 538 ~~~~~~LSgGqrqrv~LAral~------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d 608 (652)
++++.+|||||||||+|||||+ .+|++|||||||++||+.++..+.+.|+++ +.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5788899999999999999999 799999999999999999999999999875 4699999999998 46799
Q ss_pred EEEEEeCCEEE
Q 006275 609 RVVEVKGSNLQ 619 (652)
Q Consensus 609 rvi~l~~g~i~ 619 (652)
++++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999985
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-25 Score=214.49 Aligned_cols=135 Identities=12% Similarity=0.121 Sum_probs=101.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC-CcEEEEC----CCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHH
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKA----KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~-~G~i~~~----~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~ 199 (652)
+++|+||||||||||+++|+|++... .|...-. .....+||++|++ ++.++++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~~---------------- 59 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKIF---------------- 59 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET------TCCEEEE----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC------cHHHHHH----------------
Confidence 68999999999999999999998521 2322110 1123578888875 1111110
Q ss_pred HHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc-ccccCCCCCCChHHHHHHHHHHH-----
Q 006275 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKI----- 273 (652)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~-~~~~~~~~~LSGGqkqRv~LAra----- 273 (652)
..+++.. ...++++.+||||||||++||+|
T Consensus 60 --------------------------------------------~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~ 95 (178)
T 1ye8_A 60 --------------------------------------------SSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREA 95 (178)
T ss_dssp --------------------------------------------EETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------HhhcCCccccccccccCcCHHHHHHHHHHhhccccc
Confidence 0011110 24567789999999999999996
Q ss_pred HccCCCeEEEeC--CCCCCCHHHHHHHHHHHccCCCeEEEEe---cCHHHHHhhcCe
Q 006275 274 LLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMVIIS---HDRAFLDQLCTK 325 (652)
Q Consensus 274 L~~~p~iLLLDE--Pts~LD~~~~~~l~~~L~~~g~tvIivs---Hd~~~l~~~~d~ 325 (652)
++.+|++||||| ||++||+...+.+.++|++.+.|+|++| ||++++..+|++
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 999999999999 9999999999999999988788888888 599999999998
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-27 Score=230.72 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=96.4
Q ss_pred eEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee-----c--ccceecccccccCCCC
Q 006275 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----V--LPNYFEQNQAEALDLD 504 (652)
Q Consensus 432 ~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-----~--~~~~~~~~~~~~~~~~ 504 (652)
++|+++.+|+++ ++||+++|+||||||||||+++|+|+ +|++|+|...... . ..+|++|+.
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 457777899996 89999999999999999999999999 9999998421100 0 122333332
Q ss_pred CCHHHHH-HHh-------hhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q 006275 505 KTVLETV-AEA-------AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (652)
Q Consensus 505 ~tv~e~~-~~~-------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~ 576 (652)
.+|+ ... ........+.++++. + | ||||||+|||||+.+|+||||||||++
T Consensus 76 ---~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-g------------l--Gq~qrv~lAraL~~~p~lllLDEPts~--- 134 (208)
T 3b85_A 76 ---NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-G------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT--- 134 (208)
T ss_dssp -------CTTTHHHHHHHTTTSCTTHHHHHHHT-T------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC---
T ss_pred ---HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-C------------C--chHHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 3333 110 000111223344442 2 2 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEE
Q 006275 577 PSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 577 ~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i 618 (652)
++..+.++|+++ +.||| ||||++++.. ...+++|..
T Consensus 135 -~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~~ 172 (208)
T 3b85_A 135 -TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGLR 172 (208)
T ss_dssp -CHHHHHHHHTTBCTTCEEE-EEEC----------------CCH
T ss_pred -cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcHH
Confidence 888999999876 35888 9999987754 334566654
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-24 Score=223.42 Aligned_cols=89 Identities=29% Similarity=0.397 Sum_probs=74.5
Q ss_pred hccCcCCCCHHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEE
Q 006275 537 LDRKVSLLSGGEKARLAFCKFMV----KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRV 610 (652)
Q Consensus 537 ~~~~~~~LSgGqrqrv~LAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drv 610 (652)
.+.++.+||+|||||++||+||+ .+|++|||||||++||+..+..+.+.|+++ +.|||+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 46678899999999999999997 689999999999999999999999999876 459999999975 55789987
Q ss_pred --EEEeCCEEEeecCChh
Q 006275 611 --VEVKGSNLQDYAGDYN 626 (652)
Q Consensus 611 --i~l~~g~i~~~~g~~~ 626 (652)
++|.+|.......+.+
T Consensus 292 ~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEESSSCEEEEECCC-
T ss_pred EEEEEeCCEEEEEEEEcc
Confidence 7888886654434433
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-24 Score=208.19 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=100.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec----------ccceecccccccCCCCCCHHHHHHHhhhhccHH
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~----------~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~ 521 (652)
+++|+||||||||||+++|+|++. |.++|.+. ..++..|.. ++.+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~~---------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT--------EGKKKI---------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET--------TCCEEE----------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC--------cHHHHH----------
Confidence 689999999999999999999985 22333211 112222211 111111
Q ss_pred HHHHHHhhCCCCh-hhhccCcCCCCHHHHHHHHHHHH-----HccCCCeEEEeC--CCCCCCHHHHHHHHHHHHhcCceE
Q 006275 522 DIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKF-----MVKPSTLLVLDE--PTNHLDIPSKEMLEEAISEYKGTV 593 (652)
Q Consensus 522 ~~~~~L~~~~l~~-~~~~~~~~~LSgGqrqrv~LAra-----l~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~~~tv 593 (652)
+..+++.. ...++++.+||||||||++||+| ++.+|++||||| ||++||+...+.+.+.+.+.+.|+
T Consensus 59 -----~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~ 133 (178)
T 1ye8_A 59 -----FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNV 133 (178)
T ss_dssp -----EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEE
T ss_pred -----HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeE
Confidence 11122211 24567888999999999999996 999999999999 999999999999999999866678
Q ss_pred EEEe---cCHHHHHhhccEEEEEeCCEEEee
Q 006275 594 ITVS---HDRYFVKQIVNRVVEVKGSNLQDY 621 (652)
Q Consensus 594 i~vs---Hd~~~i~~~~drvi~l~~g~i~~~ 621 (652)
|++| ||++++..+|+| .+|++.++
T Consensus 134 i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 134 VATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp EEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred EEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 8888 599999999998 44555543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-26 Score=247.78 Aligned_cols=171 Identities=11% Similarity=0.115 Sum_probs=129.9
Q ss_pred eeeeeeeeEEEECCC--------------------EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-eEEEEec
Q 006275 110 VTVLKDVTWEVKKGE--------------------KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQ 168 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge--------------------~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~-~i~~v~Q 168 (652)
+.+|++|||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++|... +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 458999999999999 9999999999999999999999999999998876432 2378999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++ .++..|++|++..... ..++.++++.+++
T Consensus 116 ~~-~~~~ltv~D~~g~~~~------------------------------------------------~~~~~~~L~~~~L 146 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGST------------------------------------------------NFPPDTYLEKMKF 146 (413)
T ss_dssp CS-SCTTEEEEECCCGGGS------------------------------------------------SCCHHHHHHHTTG
T ss_pred cc-ccCCeeehHhhcccch------------------------------------------------HHHHHHHHHHcCC
Confidence 85 3456677776421100 0123345566666
Q ss_pred CcccccCCCCCCChH--HHHHHHHHHHHcc----------CCCeEEEeCCCCCCCHHHHHHHHHHHc--------cC---
Q 006275 249 TADDGDRLVASFSSG--WQMRMSLGKILLQ----------DPDLLLLDEPTNHLDLDTIEWLEGYLG--------KQ--- 305 (652)
Q Consensus 249 ~~~~~~~~~~~LSGG--qkqRv~LAraL~~----------~p~iLLLDEPts~LD~~~~~~l~~~L~--------~~--- 305 (652)
.. . +..+. |||| |+||++||+||+. +|++++|||||+|||+..++.+.+.++ +.
T Consensus 147 ~~-~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 147 YE-Y-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GG-C-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred Cc-c-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 42 2 33334 9999 9999999999999 999999999999999998887765542 22
Q ss_pred -CCeEEEEecCHHH--HHhhcCeEE-EEcCC
Q 006275 306 -DVPMVIISHDRAF--LDQLCTKIV-ETEMG 332 (652)
Q Consensus 306 -g~tvIivsHd~~~--l~~~~d~ii-~l~~G 332 (652)
..+|+++||+++. ++.+||+|. .+..|
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 2568889999987 889999886 34333
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-25 Score=243.12 Aligned_cols=172 Identities=13% Similarity=0.162 Sum_probs=132.0
Q ss_pred CeeeeeceEEEEEcCe--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-cceec
Q 006275 436 DRLLFNRANLTIERGE--------------------KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-PNYFE 494 (652)
Q Consensus 436 ~~~vl~~isl~i~~Ge--------------------~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-~~~~~ 494 (652)
++.+|++|||+|++|+ ++||+||||||||||+++|+|+++|++|+|.++|.++. .+++.
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~ 114 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY 114 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEec
Confidence 3568999999999999 99999999999999999999999999999999886542 23444
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHH--HHHHHHHHHHHcc----------CC
Q 006275 495 QNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG--EKARLAFCKFMVK----------PS 562 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG--qrqrv~LAral~~----------~p 562 (652)
|.. ..+..++.|++..... ...+.++++.+++. +. +..+. ||+| ||||++||++|+. +|
T Consensus 115 q~~---~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~-~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp 185 (413)
T 1tq4_A 115 KHP---NIPNVVFWDLPGIGST---NFPPDTYLEKMKFY-EY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKV 185 (413)
T ss_dssp ECS---SCTTEEEEECCCGGGS---SCCHHHHHHHTTGG-GC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred ccc---ccCCeeehHhhcccch---HHHHHHHHHHcCCC-cc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence 431 2345566665543322 12356778888874 22 33344 9999 9999999999999 99
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc------------CceEEEEecCHHH--HHhhccEEE-EEeCC
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY------------KGTVITVSHDRYF--VKQIVNRVV-EVKGS 616 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~------------~~tvi~vsHd~~~--i~~~~drvi-~l~~g 616 (652)
++|+|||||++||+.++..+.+.|+++ ..+|+++||+++. ++.+||++. .|..|
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 999999999999999999888877653 1368889999987 888998885 33334
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-27 Score=245.39 Aligned_cols=163 Identities=12% Similarity=0.134 Sum_probs=123.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~ 176 (652)
.|+++||+|+|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|++.++ ..
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------~~v~q~~~lf-~~ 167 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------SFANHKSHFW-LA 167 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE--------CGGGTTSGGG-GG
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE--------EEecCccccc-cc
Confidence 488999999998 77999999999999999999999999999999999998 89884 4678888764 45
Q ss_pred CHHH-HHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccC
Q 006275 177 TVRE-EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (652)
Q Consensus 177 Tv~e-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (652)
|+++ |+..... ..+ .+.+.++.+ ++ ...+
T Consensus 168 ti~~~ni~~~~~---------------------~~~--------------------------~~~~~i~~~-L~-~gld- 197 (305)
T 2v9p_A 168 SLADTRAALVDD---------------------ATH--------------------------ACWRYFDTY-LR-NALD- 197 (305)
T ss_dssp GGTTCSCEEEEE---------------------ECH--------------------------HHHHHHHHT-TT-GGGG-
T ss_pred cHHHHhhccCcc---------------------ccH--------------------------HHHHHHHHH-hH-ccCC-
Confidence 7776 6531100 000 011111111 11 1222
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCeEE
Q 006275 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~ 335 (652)
+..|||||||| ||||+.+|+||| |++||+.++..+.. +||+++.+ ..||+| +|++|++
T Consensus 198 -g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~i- 255 (305)
T 2v9p_A 198 -GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQ- 255 (305)
T ss_dssp -TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---C-
T ss_pred -ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEE-
Confidence 68999999999 999999999999 99999999887752 28998876 689999 9999988
Q ss_pred EecCChHHH
Q 006275 336 TYEGNYSQY 344 (652)
Q Consensus 336 ~~~g~~~~~ 344 (652)
.+.|+..++
T Consensus 256 v~~g~~~el 264 (305)
T 2v9p_A 256 PFNITDADW 264 (305)
T ss_dssp CCCCCHHHH
T ss_pred EEeCCHHHH
Confidence 477887664
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-24 Score=222.34 Aligned_cols=173 Identities=18% Similarity=0.244 Sum_probs=132.4
Q ss_pred eCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------ceEEEEeccC
Q 006275 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEF 170 (652)
Q Consensus 107 y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------------~~i~~v~Q~~ 170 (652)
++....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+ ..|+|++|++
T Consensus 84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~ 163 (302)
T 3b9q_A 84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 163 (302)
T ss_dssp HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-
T ss_pred hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecC
Confidence 333333467899999999999999999999999999999999999999987643 1489999998
Q ss_pred c-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 171 E-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 171 ~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
. ..+..|+++|+..+.. .. .+ ..+++.+|+.
T Consensus 164 ~~~~~~~~v~e~l~~~~~----------------~~------------------------~d--------~~lldt~gl~ 195 (302)
T 3b9q_A 164 DKAKAATVLSKAVKRGKE----------------EG------------------------YD--------VVLCDTSGRL 195 (302)
T ss_dssp -CCCHHHHHHHHHHHHHH----------------TT------------------------CS--------EEEECCCCCS
T ss_pred CccCHHHHHHHHHHHHHH----------------cC------------------------Cc--------chHHhcCCCC
Confidence 7 6677788888742100 00 00 1245667775
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEec---------CHHH
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAF 318 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsH---------d~~~ 318 (652)
+..++++.+|| |||++||||++.+|+ +|+|| ||+|||+.... ..+-++.|.|+|++|| .++.
T Consensus 196 -~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 196 -HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp -SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred -cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 44566788999 999999999999999 99999 99999998653 3333356899999999 6667
Q ss_pred HHhhcCeEEEEcCCeE
Q 006275 319 LDQLCTKIVETEMGVS 334 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~ 334 (652)
+......|.++..|..
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 7777889999998864
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-21 Score=204.30 Aligned_cols=78 Identities=26% Similarity=0.406 Sum_probs=68.3
Q ss_pred cccCCCCCCChHHHH------HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006275 252 DGDRLVASFSSGWQM------RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 252 ~~~~~~~~LSGGqkq------Rv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (652)
..++++.+||||||| |+++|+||+.+|++|||||||+|||+..+..+.++|+ +.+.|||+||||.+ +..+
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~ 319 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDA 319 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHh
Confidence 456788999999999 6788889999999999999999999999999988774 34779999999976 4589
Q ss_pred cCeEEEEc
Q 006275 323 CTKIVETE 330 (652)
Q Consensus 323 ~d~ii~l~ 330 (652)
||+|++++
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999885
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-26 Score=235.99 Aligned_cols=163 Identities=16% Similarity=0.131 Sum_probs=120.1
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCC
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 503 (652)
.|+++||++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|...+ .|. ..++
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v--------~q~--~~lf- 165 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA--------NHK--SHFW- 165 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG--------GTT--SGGG-
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe--------cCc--cccc-
Confidence 488999999998 78999999999999999999999999999999999999 79985432 111 1111
Q ss_pred CCCHHH-HHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHH
Q 006275 504 DKTVLE-TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582 (652)
Q Consensus 504 ~~tv~e-~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l 582 (652)
..|+.+ |+.+... .. ..+.+.++.+ +. ...+ +..|||||||| |||++++|+||| |++||+.++..+
T Consensus 166 ~~ti~~~ni~~~~~-~~-~~~~~~i~~~-L~-~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 166 LASLADTRAALVDD-AT-HACWRYFDTY-LR-NALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp GGGGTTCSCEEEEE-EC-HHHHHHHHHT-TT-GGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred cccHHHHhhccCcc-cc-HHHHHHHHHH-hH-ccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 123333 3332211 11 1344555553 32 2233 77899999999 999999999999 999999998887
Q ss_pred HHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 583 EEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 583 ~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
.. +||++..+ ..||+| +|++|+++ ..|+.++.
T Consensus 233 ~~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 233 LY-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp GG-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCHHHH
T ss_pred HH-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCHHHH
Confidence 52 29999876 579999 99999997 46777664
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=201.70 Aligned_cols=85 Identities=18% Similarity=0.063 Sum_probs=74.4
Q ss_pred cCCCC-CCChHHHHHHHHHHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhc
Q 006275 254 DRLVA-SFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 254 ~~~~~-~LSGGqkqRv~LAraL~---------~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~ 323 (652)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+++++.+.|+|++||. +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 55667 89999999999999999 8999999999999999999999999997766899999994 43 89
Q ss_pred CeEEEEcCCeEEEecCChHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~ 343 (652)
|+++++++|++. ..|+.++
T Consensus 335 ~~i~~l~~G~i~-~~g~~~~ 353 (359)
T 2o5v_A 335 ALTLRAQAGRFT-PVADEEM 353 (359)
T ss_dssp SEEEEEETTEEE-ECCCTTT
T ss_pred CEEEEEECCEEE-ecCCHHH
Confidence 999999999984 5566543
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-24 Score=215.42 Aligned_cols=174 Identities=10% Similarity=-0.020 Sum_probs=105.0
Q ss_pred eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC------CCceEEEEeccCccCCCCCHHHHHH
Q 006275 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------SNMKIAFLSQEFEVSMSRTVREEFM 183 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~------~~~~i~~v~Q~~~~~~~~Tv~e~i~ 183 (652)
.++++| .+|++|++++|+||||||||||+++|+|+++...+.+.+.+ ....++|++|++..++.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 347777 79999999999999999999999999999863332221111 1235889999875544444444431
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH------hhhcCCCcccccCCC
Q 006275 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL------MPELGFTADDGDRLV 257 (652)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l------l~~lgl~~~~~~~~~ 257 (652)
.... ...++. .. .....+..+++.+. ++.+|+. ...++.+
T Consensus 87 ~~~~--------------~~~n~~----~~---------------g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~ 132 (207)
T 1znw_A 87 EWAE--------------IHGGLH----RS---------------GTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMP 132 (207)
T ss_dssp EEEE--------------EGGGTE----EE---------------EEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCT
T ss_pred eehh--------------hcCchh----hc---------------CCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcC
Confidence 0000 000000 00 00001112223332 3344442 3445666
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCC----CHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEE
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL----DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVET 329 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~L----D~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ii~l 329 (652)
..|| ||+.+|++++|||||++| |+..++.+.++++ +.|.|+|+||||++++..+||+|+++
T Consensus 133 ~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 133 EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 7777 999999999999999998 6778888776653 35899999999999999999999987
Q ss_pred c
Q 006275 330 E 330 (652)
Q Consensus 330 ~ 330 (652)
.
T Consensus 202 ~ 202 (207)
T 1znw_A 202 T 202 (207)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-23 Score=218.54 Aligned_cols=166 Identities=19% Similarity=0.266 Sum_probs=131.0
Q ss_pred eeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------ceEEEEeccCc-cCCCC
Q 006275 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFE-VSMSR 176 (652)
Q Consensus 114 ~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------------~~i~~v~Q~~~-~~~~~ 176 (652)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.+.+.+ ..|+|++|++. ..+..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46889999999999999999999999999999999999999987643 14899999987 66777
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
|+++|+..+.. .. .+ ..+++.+|+. +..++.
T Consensus 228 tv~e~l~~~~~----------------~~------------------------~d--------~~lldt~Gl~-~~~~~~ 258 (359)
T 2og2_A 228 VLSKAVKRGKE----------------EG------------------------YD--------VVLCDTSGRL-HTNYSL 258 (359)
T ss_dssp HHHHHHHHHHH----------------TT------------------------CS--------EEEEECCCCS-SCCHHH
T ss_pred hHHHHHHHHHh----------------CC------------------------CH--------HHHHHhcCCC-hhhhhH
Confidence 88888742100 00 00 0245666775 345667
Q ss_pred CCCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEec---------CHHHHHhhcCe
Q 006275 257 VASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAFLDQLCTK 325 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsH---------d~~~l~~~~d~ 325 (652)
+.+|| |||++|||||+.+|+ +|+|| ||+|||+.... ..+-++.+.|+|++|| .+..+...+..
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~p 332 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIP 332 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCC
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCC
Confidence 78899 999999999999999 99999 99999998653 2333346899999999 46677777889
Q ss_pred EEEEcCCeE
Q 006275 326 IVETEMGVS 334 (652)
Q Consensus 326 ii~l~~G~~ 334 (652)
|..+..|..
T Consensus 333 I~~ig~Ge~ 341 (359)
T 2og2_A 333 VKFIGVGEA 341 (359)
T ss_dssp EEEEECSSS
T ss_pred EEEEeCCCC
Confidence 999988864
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=210.00 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=69.4
Q ss_pred CCCCCC-ChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEEE
Q 006275 255 RLVASF-SSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (652)
Q Consensus 255 ~~~~~L-SGGqkqRv~LAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~ii~l 329 (652)
+++.+| ||||||||+||+||+.+| ++|||||||+|||+.++..+.++|++ .|.|||+|||+++.+. .||+++++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 456788 999999999999999999 99999999999999999999887743 2899999999999885 69999999
Q ss_pred cCCe
Q 006275 330 EMGV 333 (652)
Q Consensus 330 ~~G~ 333 (652)
.++.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 6553
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-22 Score=212.65 Aligned_cols=167 Identities=17% Similarity=0.109 Sum_probs=128.3
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc----------------ceeccccccc-CC
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEA-LD 502 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~~~~~~~-~~ 502 (652)
+.++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.. .++.|+ .. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~--~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE--GDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC----CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEec--CCccC
Confidence 356788999999999999999999999999999999999999998876521 123332 23 45
Q ss_pred CCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHH
Q 006275 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKE 580 (652)
Q Consensus 503 ~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~--lLlLDEPt~~LD~~~~~ 580 (652)
+..++.+++..+..... ...+++.+|+. +..++.+.+|| |||++||||++.+|+ +|+|| ||+|||+....
T Consensus 168 ~~~~v~e~l~~~~~~~~---d~~lldt~gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~ 239 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEGY---DVVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 239 (302)
T ss_dssp HHHHHHHHHHHHHHTTC---SEEEECCCCCS-SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHcCC---cchHHhcCCCC-cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH
Confidence 55678888876432110 01246667764 45577888999 999999999999999 99999 99999998653
Q ss_pred HHHHHHHhcCceEEEEec---------CHHHHHhhccEEEEEeCCEE
Q 006275 581 MLEEAISEYKGTVITVSH---------DRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 581 ~l~~~l~~~~~tvi~vsH---------d~~~i~~~~drvi~l~~g~i 618 (652)
.+.-++.+.|+|++|| .++.+..+...|.++..|+.
T Consensus 240 --~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 240 --REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp --HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred --HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 3333356779999999 66777777889999998864
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-23 Score=225.82 Aligned_cols=177 Identities=12% Similarity=0.142 Sum_probs=136.4
Q ss_pred CceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------
Q 006275 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------- 160 (652)
+.++++++++.|+ +.++|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4689999999997 67799999 9999999999999999999999999999999999999988762
Q ss_pred ----ceEEEEecc-CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcH
Q 006275 161 ----MKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (652)
Q Consensus 161 ----~~i~~v~Q~-~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (652)
..++|++|. ....+..|+.+|+..... + +. . ..
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae-----------~---~~------------------------~-~~--- 246 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAE-----------D---FR------------------------D-RG--- 246 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHH-----------H---HH------------------------T-TT---
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHH-----------H---HH------------------------h-CC---
Confidence 258999995 333345566666542100 0 00 0 00
Q ss_pred HHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccC-------CC-
Q 006275 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ-------DV- 307 (652)
Q Consensus 236 ~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~-------g~- 307 (652)
..++ ...+. +..||+|| |||+|| +.+|++ |+|||+.....+.++|.+. |.
T Consensus 247 ----~~v~-------~~ld~-l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gsi 304 (438)
T 2dpy_A 247 ----QHVL-------LIMDS-LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSI 304 (438)
T ss_dssp ----CEEE-------EEEEC-HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEE
T ss_pred ----CCHH-------HHHHh-HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcc
Confidence 0000 11122 57799999 999999 889988 9999999999999988532 43
Q ss_pred ----eEEEEecCHHHHHhhcCeEEEEcCCeEEEecCC
Q 006275 308 ----PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (652)
Q Consensus 308 ----tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~ 340 (652)
||+++|||++ ..+||+++++.+|++. ..|+
T Consensus 305 T~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv-l~~~ 338 (438)
T 2dpy_A 305 TAFYTVLTEGDDQQ--DPIADSARAILDGHIV-LSRR 338 (438)
T ss_dssp EEEEEEECSSSCSC--CHHHHHHHHHSSEEEE-ECHH
T ss_pred cceeEEEEeCCCcc--chhhceEEEEeCcEEE-EeCC
Confidence 8999999999 6789999999999874 4443
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-24 Score=224.32 Aligned_cols=180 Identities=8% Similarity=0.067 Sum_probs=126.5
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEE-----------------------EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWE-----------------------VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~-----------------------i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~ 153 (652)
.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|+.|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 589999999994 566666664 8999999999999999999999999999998664
Q ss_pred EEECCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChh
Q 006275 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (652)
Q Consensus 154 i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (652)
..++|++|++.+++. |+++|+...... ... ..
T Consensus 121 -------~~v~~v~qd~~~~~~-t~~e~~~~~~~~----------------g~~------------------------~~ 152 (312)
T 3aez_A 121 -------PRVDLVTTDGFLYPN-AELQRRNLMHRK----------------GFP------------------------ES 152 (312)
T ss_dssp -------CCEEEEEGGGGBCCH-HHHHHTTCTTCT----------------TSG------------------------GG
T ss_pred -------CeEEEEecCccCCcc-cHHHHHHHHHhc----------------CCC------------------------hH
Confidence 368999999877666 888886310000 000 00
Q ss_pred cHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEe
Q 006275 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIIS 313 (652)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivs 313 (652)
.....+.++++.++ . ...+.++..|||||+||+++|+|++.+|+|||||||+..+|+.. ..+.+ ..+ .+|+|+
T Consensus 153 ~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~---~~D-~~I~V~ 225 (312)
T 3aez_A 153 YNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LMVSD---LFD-FSLYVD 225 (312)
T ss_dssp BCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CCGGG---GCS-EEEEEE
T ss_pred HHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HHHHH---hcC-cEEEEE
Confidence 01122334455555 2 23346678999999999999999999999999999999998622 11111 123 457778
Q ss_pred cCHHHHH-hhcCeEEEEcCCe
Q 006275 314 HDRAFLD-QLCTKIVETEMGV 333 (652)
Q Consensus 314 Hd~~~l~-~~~d~ii~l~~G~ 333 (652)
|+.+... ..++|.+.+.++.
T Consensus 226 a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 226 ARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp ECHHHHHHHHHHHHHHHTTTG
T ss_pred CCHHHHHHHHHHHHHHHHhcc
Confidence 8876643 3455655555443
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-22 Score=213.66 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=105.5
Q ss_pred EEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCC
Q 006275 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506 (652)
Q Consensus 427 ~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~t 506 (652)
++++++ | .++++++||+|++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ... . .
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~--~~~-----~-~--- 216 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV--FKH-----H-K--- 216 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC--CSS-----C-S---
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc--ccc-----c-h---
Confidence 445555 5 458999999999999999999999999999999999999999999998853110 000 0 0
Q ss_pred HHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 006275 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (652)
Q Consensus 507 v~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 586 (652)
. .+++ .. . |||+||++|||||..+|++|||||||+ .+ +.++|
T Consensus 217 ----------~-----------~i~~----~~----g--gg~~~r~~la~aL~~~p~ilildE~~~---~e----~~~~l 258 (330)
T 2pt7_A 217 ----------N-----------YTQL----FF----G--GNITSADCLKSCLRMRPDRIILGELRS---SE----AYDFY 258 (330)
T ss_dssp ----------S-----------EEEE----EC----B--TTBCHHHHHHHHTTSCCSEEEECCCCS---TH----HHHHH
T ss_pred ----------h-----------EEEE----Ee----C--CChhHHHHHHHHhhhCCCEEEEcCCCh---HH----HHHHH
Confidence 0 0000 00 0 899999999999999999999999998 22 23344
Q ss_pred Hhc--Cc-eEEEEecCHHHHHhhccEEEEEeCCE
Q 006275 587 SEY--KG-TVITVSHDRYFVKQIVNRVVEVKGSN 617 (652)
Q Consensus 587 ~~~--~~-tvi~vsHd~~~i~~~~drvi~l~~g~ 617 (652)
+.. +. |+|+++|+.+ +...|||+++|.+|.
T Consensus 259 ~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 259 NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 332 33 7999999998 667799999998775
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-24 Score=211.90 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=99.9
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEEEeccCccCCCCCH-
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQEFEVSMSRTV- 178 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~v~Q~~~~~~~~Tv- 178 (652)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+ ..++|++|++..+...+.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999998 5 98887 321 246777777543211100
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCC
Q 006275 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (652)
Q Consensus 179 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~ 258 (652)
.++ ++... +... ... .....+.++++...+ ...+ .
T Consensus 87 ~~~---------------------l~~~~----~~~~-------------~~g--~~~~~i~~~l~~~~~--~il~---~ 121 (218)
T 1z6g_A 87 EDF---------------------LEYDN----YANN-------------FYG--TLKSEYDKAKEQNKI--CLFE---M 121 (218)
T ss_dssp TCE---------------------EEEEE----ETTE-------------EEE--EEHHHHHHHHHTTCE--EEEE---E
T ss_pred cch---------------------hhhhh----cccc-------------cCC--CcHHHHHHHHhCCCc--EEEE---e
Confidence 000 00000 0000 000 001123333333222 1122 6
Q ss_pred CCChHHHHHHHH-----HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----------CCCeEEEEecCHHHHHhhc
Q 006275 259 SFSSGWQMRMSL-----GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----------QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 259 ~LSGGqkqRv~L-----AraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----------~g~tvIivsHd~~~l~~~~ 323 (652)
+|||||+||++| ||+|+.+|++++|||||+++|..+...+.+.|.+ ...+.|+++||++.+...+
T Consensus 122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~ 201 (218)
T 1z6g_A 122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQL 201 (218)
T ss_dssp CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHH
Confidence 799999999999 8999999999999999999999887777665532 2455666666666666555
Q ss_pred CeEE
Q 006275 324 TKIV 327 (652)
Q Consensus 324 d~ii 327 (652)
++++
T Consensus 202 ~~ii 205 (218)
T 1z6g_A 202 KNYL 205 (218)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-21 Score=209.06 Aligned_cols=166 Identities=17% Similarity=0.116 Sum_probs=127.1
Q ss_pred eceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc----------------ceeccccccc-CCC
Q 006275 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEA-LDL 503 (652)
Q Consensus 441 ~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~~~~~~~-~~~ 503 (652)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.. .++.|+ .. .++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~--~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE--GDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCS--SSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEec--ccccCh
Confidence 35778899999999999999999999999999999999999998876521 122322 23 445
Q ss_pred CCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHH
Q 006275 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEM 581 (652)
Q Consensus 504 ~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~--lLlLDEPt~~LD~~~~~~ 581 (652)
..++.+++..+...... ..+++.+|+. +..++.+.+|| |||++||||++.+|+ +|+|| ||+|||+.++.
T Consensus 226 ~~tv~e~l~~~~~~~~d---~~lldt~Gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~- 296 (359)
T 2og2_A 226 ATVLSKAVKRGKEEGYD---VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA- 296 (359)
T ss_dssp HHHHHHHHHHHHHTTCS---EEEEECCCCS-SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred hhhHHHHHHHHHhCCCH---HHHHHhcCCC-hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-
Confidence 56788888764321100 1245667764 44567788899 999999999999999 99999 99999988653
Q ss_pred HHHHHHhcCceEEEEec---------CHHHHHhhccEEEEEeCCEE
Q 006275 582 LEEAISEYKGTVITVSH---------DRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 582 l~~~l~~~~~tvi~vsH---------d~~~i~~~~drvi~l~~g~i 618 (652)
.++-++.+.|+|++|| .+..+..+...|.++..|+.
T Consensus 297 -~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 -REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 3333345789999999 56777777889999988864
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=191.68 Aligned_cols=77 Identities=36% Similarity=0.584 Sum_probs=68.6
Q ss_pred hccCcCCCCHHHHH------HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhc
Q 006275 537 LDRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIV 607 (652)
Q Consensus 537 ~~~~~~~LSgGqrq------rv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~ 607 (652)
.++++.+||||||| |+++|++++.+|++|||||||+|||+.++..+.++|+++ +.|||+||||.+ +..+|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence 46788999999999 678888999999999999999999999999999999865 349999999965 56789
Q ss_pred cEEEEEe
Q 006275 608 NRVVEVK 614 (652)
Q Consensus 608 drvi~l~ 614 (652)
|++++|+
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999986
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-23 Score=202.86 Aligned_cols=162 Identities=10% Similarity=-0.046 Sum_probs=98.8
Q ss_pred eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec------ccceecccccccCCCCCCHHHH
Q 006275 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------LPNYFEQNQAEALDLDKTVLET 510 (652)
Q Consensus 437 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~------~~~~~~~~~~~~~~~~~tv~e~ 510 (652)
.++++| .+|++||+++|+||||||||||+++|+|+++...+.+.+.+.+. ..+|++|+.. .++.+++.++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~~~~~~ 84 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPT--RFQQLIDQGE 84 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHH--HHHHHHHTTC
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHH--HHHHHHhcCC
Confidence 457777 79999999999999999999999999999964333222111111 1223443321 1122222222
Q ss_pred HHHh----h--h--hccH----HHHHHH------HhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 511 VAEA----A--E--DWRI----DDIKGL------LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 511 ~~~~----~--~--~~~~----~~~~~~------L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
+... . . .... +.+.+. ++.+|+ ....++++..|| +|+.+|++++|||||+
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~ 152 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGA-RAIKKTMPEAVT-----------VFLAPPSWQDLQARLI 152 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHH-HHHHHHCTTSEE-----------EEEECSCHHHHHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHH-HHHHHhcCCcEE-----------EEEECCCHHHHHHHHH
Confidence 2100 0 0 0011 122222 444444 345567777787 8999999999999999
Q ss_pred CC----CHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEe
Q 006275 573 HL----DIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK 614 (652)
Q Consensus 573 ~L----D~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~ 614 (652)
++ |+..++.+.++++++ +.|+|+||||++++..+||||++|.
T Consensus 153 ~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 153 GRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 98 677888888887654 4599999999999999999999984
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=192.80 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=76.4
Q ss_pred ccCcC-CCCHHHHHHHHHHHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhc
Q 006275 538 DRKVS-LLSGGEKARLAFCKFMV---------KPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607 (652)
Q Consensus 538 ~~~~~-~LSgGqrqrv~LAral~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~ 607 (652)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..+.+.|.+...|+|++||. +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 45666 79999999999999999 8999999999999999999999999999877899999994 44 79
Q ss_pred cEEEEEeCCEEEeecCChhhH
Q 006275 608 NRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 608 drvi~l~~g~i~~~~g~~~~~ 628 (652)
|++++|++|++.. .|++++.
T Consensus 335 ~~i~~l~~G~i~~-~g~~~~~ 354 (359)
T 2o5v_A 335 ALTLRAQAGRFTP-VADEEMQ 354 (359)
T ss_dssp SEEEEEETTEEEE-CCCTTTS
T ss_pred CEEEEEECCEEEe-cCCHHHH
Confidence 9999999999974 5776653
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-21 Score=229.90 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=118.1
Q ss_pred CCceEEEe-----EEEEe-CCeeeeeeeeEEEEC-------CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc
Q 006275 95 SSGVKLEN-----ISKSY-KGVTVLKDVTWEVKK-------GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161 (652)
Q Consensus 95 ~~~i~v~~-----ls~~y-~~~~vL~~vsl~i~~-------Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~ 161 (652)
.+.|+++| +++.| ++..+++|++|++++ |++++|+||||||||||||+| |++.+. .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH----------H
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH----------h
Confidence 34699999 99999 667799999999987 999999999999999999999 988641 2
Q ss_pred eEE-EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHH
Q 006275 162 KIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (652)
Q Consensus 162 ~i~-~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (652)
++| ||||++. ..|+.++++.
T Consensus 817 qiG~~Vpq~~~---~l~v~d~I~~-------------------------------------------------------- 837 (1022)
T 2o8b_B 817 QMGCYVPAEVC---RLTPIDRVFT-------------------------------------------------------- 837 (1022)
T ss_dssp TTTCCEESSEE---EECCCSBEEE--------------------------------------------------------
T ss_pred heeEEeccCcC---CCCHHHHHHH--------------------------------------------------------
Confidence 355 8999752 3455444321
Q ss_pred HHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH-HHHH---HHHcc-CCCeEEEEecC
Q 006275 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI-EWLE---GYLGK-QDVPMVIISHD 315 (652)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~-~~l~---~~L~~-~g~tvIivsHd 315 (652)
.+|+. +...+...++|+++++ +++|++++.+|+++|||||++|+|+... ..+. +.|.+ .|+++|++||+
T Consensus 838 ----rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~ 911 (1022)
T 2o8b_B 838 ----RLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY 911 (1022)
T ss_dssp ----ECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred ----HcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 11221 1122234677887775 9999999999999999999999998763 3333 33444 48999999999
Q ss_pred HHHHHhhcCeEEEEcCCeEE
Q 006275 316 RAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~ 335 (652)
.+++..+||++.++. |++.
T Consensus 912 ~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 912 HSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp HHHHHHTSSCSSEEE-EEEE
T ss_pred HHHHHHhCCcceeec-CeEE
Confidence 999999999988764 6553
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-22 Score=219.12 Aligned_cols=181 Identities=16% Similarity=0.148 Sum_probs=135.0
Q ss_pred cEEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECce---eccc--------
Q 006275 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NVLP-------- 490 (652)
Q Consensus 423 ~~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~---~~~~-------- 490 (652)
++++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|.++|. ++..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 3588999999997 67899999 999999999999999999999999999999999999999987 3311
Q ss_pred -------ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 491 -------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 491 -------~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
.++.|.. ....+..++.+++......+. . ..-.. ..+. ..+..||+|| |||+|| +.+|+
T Consensus 209 ~~l~r~i~~v~q~~-~~~~~~~~v~~~~~~~ae~~~-----~--~~~~v-~~~l-d~l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 209 DGRARSVVIAAPAD-VSPLLRMQGAAYATRIAEDFR-----D--RGQHV-LLIM-DSLTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp HHHHTEEEEEECTT-SCHHHHHHHHHHHHHHHHHHH-----T--TTCEE-EEEE-ECHHHHHHHH-HHHHHH---TTCCC
T ss_pred cccCceEEEEECCC-CCHHHHHHHHHHHHHHHHHHH-----h--CCCCH-HHHH-HhHHHHHHHH-HHHHHH---hCCCc
Confidence 2233321 112234456666554322110 0 00000 0112 2366799999 999999 88888
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcC------c------eEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEYK------G------TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNV 627 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~~------~------tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~ 627 (652)
+ |+|||+.+...+.+++.+.. + ||+++|||++ ..+||++++|.+|+++. .++..+
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl-~~~~~~ 341 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL-SRRLAE 341 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE-CHHHHH
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE-eCCHHH
Confidence 8 99999999999999998652 3 8999999998 67899999999999873 444443
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.9e-22 Score=209.28 Aligned_cols=141 Identities=12% Similarity=0.138 Sum_probs=106.3
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHH
Q 006275 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~ 179 (652)
+++++| | .++++++||.|++|++++|+||||||||||+++|+|+++|++|.|.++|... ..+ ... +
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--------~~~-~~~--~ 216 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--------IVF-KHH--K 216 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--------CCC-SSC--S
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--------ccc-ccc--h
Confidence 344445 5 4589999999999999999999999999999999999999999999986431 000 000 0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCC
Q 006275 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (652)
Q Consensus 180 e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~ 259 (652)
+ .+++ +..
T Consensus 217 -~---------------------------------------------------------------~i~~--------~~g 224 (330)
T 2pt7_A 217 -N---------------------------------------------------------------YTQL--------FFG 224 (330)
T ss_dssp -S---------------------------------------------------------------EEEE--------ECB
T ss_pred -h---------------------------------------------------------------EEEE--------EeC
Confidence 0 0000 001
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCe
Q 006275 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 260 LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~ 333 (652)
|||+||++|||||..+|++|||||||+ .+..+.| +.+...+.|+|+++|+.+ +...|||++++.+|.
T Consensus 225 --gg~~~r~~la~aL~~~p~ilildE~~~---~e~~~~l-~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 --GNITSADCLKSCLRMRPDRIILGELRS---SEAYDFY-NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp --TTBCHHHHHHHHTTSCCSEEEECCCCS---THHHHHH-HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred --CChhHHHHHHHHhhhCCCEEEEcCCCh---HHHHHHH-HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 899999999999999999999999998 2333333 334433458999999999 668899999998875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-21 Score=213.91 Aligned_cols=169 Identities=11% Similarity=0.069 Sum_probs=123.0
Q ss_pred ceEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCC
Q 006275 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (652)
Q Consensus 97 ~i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~ 175 (652)
.++++++++.|++ ..+| +..|++|++++|+|+||||||||+++|+|..+|. |+ .-+.|++|++..
T Consensus 257 ~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-------~vi~~~~ee~~~--- 322 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-------RAILFAYEESRA--- 322 (525)
T ss_dssp CCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-------CEEEEESSSCHH---
T ss_pred ccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-------CEEEEEEeCCHH---
Confidence 3566777766643 2233 3489999999999999999999999999998874 53 124566676410
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccC
Q 006275 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (652)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (652)
.+.++.. ... ++ .+ + +...|+. ...+.
T Consensus 323 -~l~~~~~---------------------~~g----------------------~~---~~----~-~~~~g~~-~~~~~ 349 (525)
T 1tf7_A 323 -QLLRNAY---------------------SWG----------------------MD---FE----E-MERQNLL-KIVCA 349 (525)
T ss_dssp -HHHHHHH---------------------TTS----------------------CC---HH----H-HHHTTSE-EECCC
T ss_pred -HHHHHHH---------------------HcC----------------------CC---HH----H-HHhCCCE-EEEEe
Confidence 1111110 000 00 00 1 1122332 34566
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH-----HHHHHHHH---HccCCCeEEEEecCH----------H
Q 006275 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-----TIEWLEGY---LGKQDVPMVIISHDR----------A 317 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~-----~~~~l~~~---L~~~g~tvIivsHd~----------~ 317 (652)
.+.+|||||+||+++|+++..+|++||+| ||++||.. .++.+.++ +++.|+|||+|||+. .
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~ 428 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS 428 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc
Confidence 78999999999999999999999999999 99999998 77776655 456799999999999 7
Q ss_pred HHHhhcCeEEEEcCCe
Q 006275 318 FLDQLCTKIVETEMGV 333 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~ 333 (652)
.+..+||+|++|++|.
T Consensus 429 ~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 429 HISTITDTIILLQYVE 444 (525)
T ss_dssp CCTTTCSEEEEEEEEE
T ss_pred ccceeeeEEEEEEEEE
Confidence 8888999999998876
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-22 Score=204.46 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=90.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHH
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~ 197 (652)
.++|+||||||||||+++|+|+..|++|+|.++|.+ ..++|++|++.+.+.+||.||+..+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~--------- 74 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI--------- 74 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCS---------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhc---------
Confidence 489999999999999999999999999999887642 3699999998887788999886421100
Q ss_pred HHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 006275 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277 (652)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~ 277 (652)
.. .... +.+.+.+. ....++.+.+||||||||+++|||++.
T Consensus 75 ------~~-~~~~--------------------------~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~- 115 (270)
T 3sop_A 75 ------NN-ENCW--------------------------EPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC- 115 (270)
T ss_dssp ------BC-TTCS--------------------------HHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE-
T ss_pred ------cc-HHHH--------------------------HHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee-
Confidence 00 0000 00001100 012233457899999999999999886
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006275 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (652)
Q Consensus 278 p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (652)
+++||||+.+||+...+.+. .|++. ++||+|.|..+.+
T Consensus 116 --lllldep~~gL~~lD~~~l~-~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 116 --LYFISPTGHSLRPLDLEFMK-HLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp --EEEECCCSSSCCHHHHHHHH-HHHTT-SEEEEEETTGGGS
T ss_pred --eEEEecCCCcCCHHHHHHHH-HHHhc-CcEEEEEeccccC
Confidence 99999999999998865554 44444 8999998875543
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-22 Score=213.85 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=127.6
Q ss_pred EEEEEeeeeEeCCeeeeeceEEE-----------------------EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLT-----------------------IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~-----------------------i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (652)
.|+++||++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 589999999995 566776664 8999999999999999999999999999997663
Q ss_pred EEECceecccceecccccccCCCCCCHHHHHHHhh-----hhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHH
Q 006275 481 VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA-----EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 481 i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~-----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LA 555 (652)
...+++.|+ ..+.+. |+.+|+.... .......+.+.|+.++ . ...+.++..|||||+||+++|
T Consensus 121 -------~~v~~v~qd--~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a 188 (312)
T 3aez_A 121 -------PRVDLVTTD--GFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGA 188 (312)
T ss_dssp -------CCEEEEEGG--GGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEE
T ss_pred -------CeEEEEecC--ccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhH
Confidence 112445543 234444 8888875421 1223455677777776 2 334567789999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHH-hhccEEEEEeCC
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVK-QIVNRVVEVKGS 616 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~-~~~drvi~l~~g 616 (652)
++++.+|+|||||||+..+|... ..+.++-..+|+|+|+.+.+. .+.+|.+.+.++
T Consensus 189 ~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 189 EQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998622 123344446788899987754 345666655544
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-22 Score=198.25 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=103.9
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------cceecccccccCCCCCC
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYFEQNQAEALDLDKT 506 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~~~~~~~~~~~~~~t 506 (652)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |.|.+ |.++. ..|++|+..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~-------- 78 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKT-------- 78 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHH--------
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHH--------
Confidence 4689999999999999999999999999999999999 6 99988 65431 112222210
Q ss_pred HHHHHHH----------hhhh--ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHH-----HHHHccCCCeEEEeC
Q 006275 507 VLETVAE----------AAED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF-----CKFMVKPSTLLVLDE 569 (652)
Q Consensus 507 v~e~~~~----------~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~L-----Aral~~~p~lLlLDE 569 (652)
.+..... .... .....+.++++.... ...+ .+|||||+||++| ||+++.+|++++|||
T Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~--~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 79 IFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKI--CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp HHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCE--EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred HHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCc--EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 1111110 0000 112345666665432 1222 4689999999999 899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----------CceEEEEecCHHHHHhhccEEEE
Q 006275 570 PTNHLDIPSKEMLEEAISEY----------KGTVITVSHDRYFVKQIVNRVVE 612 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----------~~tvi~vsHd~~~i~~~~drvi~ 612 (652)
||+++|..+...+.+.+.+. ..+.|+|+||++.+...+++++.
T Consensus 154 ~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 99999999988888877532 24678888888888777776654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-21 Score=204.93 Aligned_cols=174 Identities=16% Similarity=0.214 Sum_probs=125.3
Q ss_pred CceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------
Q 006275 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------- 160 (652)
+.++++++++.|+ +.++++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4588999999997 67899999 9999999999999999999999999999999999988876643
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..+.+++|.. .+..+.+...+ ..+ .+
T Consensus 123 ~~~~~v~~~~~~~-----~~~~~r~~~~~--------------~~~------------------------------~~-- 151 (347)
T 2obl_A 123 TLSKCVLVVTTSD-----RPALERMKAAF--------------TAT------------------------------TI-- 151 (347)
T ss_dssp HHTTEEEEEECTT-----SCHHHHHHHHH--------------HHH------------------------------HH--
T ss_pred hhhceEEEEECCC-----CCHHHHHHHHH--------------HHH------------------------------HH--
Confidence 1245555432 11111111000 000 00
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc-----CCC-----
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDV----- 307 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~-----~g~----- 307 (652)
.+.+...|-.-...-..+..||+|| |||++| +.+|++ |+|||+.....+.+++++ .|.
T Consensus 152 --ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~ 219 (347)
T 2obl_A 152 --AEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIY 219 (347)
T ss_dssp --HHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEE
T ss_pred --HHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEE
Confidence 0000000100000113468899999 999999 688887 999999999999998853 355
Q ss_pred eEEEEecCHHHHHhhcCeEEEEcCCeEE
Q 006275 308 PMVIISHDRAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 308 tvIivsHd~~~l~~~~d~ii~l~~G~~~ 335 (652)
||+++|||++ ..+||+++.+.+|++.
T Consensus 220 tVl~~thdl~--~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 220 TVLLESDNVN--DPIGDEVRSILDGHIV 245 (347)
T ss_dssp EEECCSSCCC--CHHHHHHHHHCSEEEE
T ss_pred EEEEeCCCCC--ChhhhheEEeeCcEEE
Confidence 8999999999 6899999999999884
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-21 Score=205.63 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=129.7
Q ss_pred cEEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-----ceeccc
Q 006275 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQN 496 (652)
Q Consensus 423 ~~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-----~~~~~~ 496 (652)
.+++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+... .+....
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 3588999999997 67899999 9999999999999999999999999999999999999888754210 010000
Q ss_pred -----ccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 497 -----QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 497 -----~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
.......+.+..+.+...... ..+.+.+...+-.--..-..+..||+|| ||+++| +.+|++ |
T Consensus 123 ~~~~~v~~~~~~~~~~~~r~~~~~~~---~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t 189 (347)
T 2obl_A 123 TLSKCVLVVTTSDRPALERMKAAFTA---TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------R 189 (347)
T ss_dssp HHTTEEEEEECTTSCHHHHHHHHHHH---HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------B
T ss_pred hhhceEEEEECCCCCHHHHHHHHHHH---HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------c
Confidence 000000112222222111100 0011111111100000115678899999 899999 688887 9
Q ss_pred CCCCHHHHHHHHHHHHhc-----Cc-----eEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhh
Q 006275 572 NHLDIPSKEMLEEAISEY-----KG-----TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNV 627 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~~~-----~~-----tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~ 627 (652)
+|||+.....+.+++++. +. ||+++|||++ ..+||+++.|.+|+|+ ..++..+
T Consensus 190 ~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Iv-l~~~l~~ 252 (347)
T 2obl_A 190 GGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIV-LTRELAE 252 (347)
T ss_dssp TTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEE-BCHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEE-EeCCHHH
Confidence 999999999999999865 23 7999999998 6789999999999997 3444443
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-19 Score=189.38 Aligned_cols=177 Identities=15% Similarity=0.105 Sum_probs=110.7
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEECceecccceecccc-cccCCCCCCHHHHHHHhh
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQ-AEALDLDKTVLETVAEAA 515 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~~-~~~~~~~~tv~e~~~~~~ 515 (652)
++|+++++.|++|++++|+||||||||||++.|+|...|.+| .|.+.+.......+.... ........+..+++....
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~ 102 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 102 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC
Confidence 479999999999999999999999999999999999998877 665433222111000000 000001112222222111
Q ss_pred -hhcc-HHHHHHHHhhCCCChhhhccCcCCCCHHH-HHHHHHHHHHccCCCeEEEeCCCC---C---CCH-HHHHHHHHH
Q 006275 516 -EDWR-IDDIKGLLGRCNFKADMLDRKVSLLSGGE-KARLAFCKFMVKPSTLLVLDEPTN---H---LDI-PSKEMLEEA 585 (652)
Q Consensus 516 -~~~~-~~~~~~~L~~~~l~~~~~~~~~~~LSgGq-rqrv~LAral~~~p~lLlLDEPt~---~---LD~-~~~~~l~~~ 585 (652)
.... ...+.++++..++. ....+..+|.+| +||+. |+++..+|++|||||||+ + +|. .....+.+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~ 178 (296)
T 1cr0_A 103 IENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTK 178 (296)
T ss_dssp HHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHH
Confidence 0000 11223344433331 233446789999 66666 999999999999999999 4 454 555666666
Q ss_pred HH----hcCceEEEEecCH--H--------------------HHHhhccEEEEEeCCEE
Q 006275 586 IS----EYKGTVITVSHDR--Y--------------------FVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 586 l~----~~~~tvi~vsHd~--~--------------------~i~~~~drvi~l~~g~i 618 (652)
|+ +.+.|||++||+. + .+.++||+|++|++|+.
T Consensus 179 L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 179 LKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 64 3467999999995 5 78889999999988764
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-20 Score=218.32 Aligned_cols=165 Identities=18% Similarity=0.173 Sum_probs=115.3
Q ss_pred CCcEEEEEe-----eeeEe-CCeeeeeceEEEEEc-------CeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee
Q 006275 421 GRSVVTIKN-----LEFGY-EDRLLFNRANLTIER-------GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (652)
Q Consensus 421 ~~~~i~~~~-----v~~~y-~~~~vl~~isl~i~~-------Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (652)
..++|+++| |++.| ++..++++++|++++ |++++|+||||||||||||+| |++.+-.
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a--------- 816 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA--------- 816 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH---------
T ss_pred CCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh---------
Confidence 345799999 99999 667899999999987 999999999999999999999 9876421
Q ss_pred cccc-eecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 488 VLPN-YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 488 ~~~~-~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
..+ ++++... ..++.+++ +.++|.. +...+..+++|+++++ +++|++++.+|+++|
T Consensus 817 -qiG~~Vpq~~~-----~l~v~d~I---------------~~rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlL 873 (1022)
T 2o8b_B 817 -QMGCYVPAEVC-----RLTPIDRV---------------FTRLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVL 873 (1022)
T ss_dssp -TTTCCEESSEE-----EECCCSBE---------------EEECC----------CHHHHHHHH-HHHHHHHCCTTCEEE
T ss_pred -heeEEeccCcC-----CCCHHHHH---------------HHHcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEE
Confidence 122 4444321 12222222 1233332 2233455678887775 999999999999999
Q ss_pred EeCCCCCCCHHHH-HHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 567 LDEPTNHLDIPSK-EMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 567 LDEPt~~LD~~~~-~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
|||||+|+|+... ..+..+|+.+ +.++|++||+.+++..++|++.+++ |++.
T Consensus 874 LDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 874 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE-EEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec-CeEE
Confidence 9999999998874 4455555432 5699999999999999999998874 6665
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-20 Score=190.75 Aligned_cols=180 Identities=21% Similarity=0.163 Sum_probs=109.1
Q ss_pred eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc-EEEECCCCceEEEEeccCccCCCCCHHHHHHHhhHH
Q 006275 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G-~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~ 188 (652)
.++|+++++.|++|++++|+||||||||||++.|+|.+.|.+| .|. |+..+. +..+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~---------~~~~e~------~~~~-~~~---- 81 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG---------LAMLEE------SVEE-TAE---- 81 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE---------EEESSS------CHHH-HHH----
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE---------EEeCcC------CHHH-HHH----
Confidence 3579999999999999999999999999999999999988877 443 332221 1111 100
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHH-HHH
Q 006275 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW-QMR 267 (652)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq-kqR 267 (652)
++....... .......+ .. . .+...+..+.+.++++..++. .+..+.++|.+| +||
T Consensus 82 ---------r~~~~~~~~--~~~~~~~l-~~-~-------~~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~ 138 (296)
T 1cr0_A 82 ---------DLIGLHNRV--RLRQSDSL-KR-E-------IIENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAK 138 (296)
T ss_dssp ---------HHHHHHTTC--CGGGCHHH-HH-H-------HHHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHH
T ss_pred ---------HHHHHHcCC--Chhhcccc-cc-C-------CCCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHH
Confidence 000000000 00000000 00 0 000111223334444433321 222346789999 666
Q ss_pred HHHHHHHccCCCeEEEeCCCC---C---CCH-HHHHHHHHHH----ccCCCeEEEEecCH--H-----------------
Q 006275 268 MSLGKILLQDPDLLLLDEPTN---H---LDL-DTIEWLEGYL----GKQDVPMVIISHDR--A----------------- 317 (652)
Q Consensus 268 v~LAraL~~~p~iLLLDEPts---~---LD~-~~~~~l~~~L----~~~g~tvIivsHd~--~----------------- 317 (652)
+. |+++..+|++||+||||+ + +|. .....+.+.| ++.|+|||++||+. +
T Consensus 139 ~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~ 217 (296)
T 1cr0_A 139 LA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLR 217 (296)
T ss_dssp HH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC
T ss_pred HH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhc
Confidence 66 999999999999999999 4 454 4555555554 34599999999994 5
Q ss_pred ---HHHhhcCeEEEEcCCe
Q 006275 318 ---FLDQLCTKIVETEMGV 333 (652)
Q Consensus 318 ---~l~~~~d~ii~l~~G~ 333 (652)
.+.++||+|++|..|.
T Consensus 218 ~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 218 GSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ---CHHHHCSEEEEEEEC-
T ss_pred ccHHhHhhCcEEEEEecCc
Confidence 7888999999998776
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-19 Score=211.17 Aligned_cols=146 Identities=21% Similarity=0.182 Sum_probs=112.1
Q ss_pred CceEEEeEEEEe---CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEECCCCceEEEEeccCc
Q 006275 96 SGVKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEFE 171 (652)
Q Consensus 96 ~~i~v~~ls~~y---~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-p~~G~i~~~~~~~~i~~v~Q~~~ 171 (652)
..|+++++..-. ++..+++|+||+ |++++|+||||||||||||+|+|+.. +..|.+... ....+++++|
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~--- 621 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG--- 621 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE---
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH---
Confidence 358888774322 335689999999 99999999999999999999999874 678875422 2345777776
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcc
Q 006275 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (652)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (652)
++...++.||+.
T Consensus 622 i~~~~~~~d~l~-------------------------------------------------------------------- 633 (765)
T 1ewq_A 622 IYTRIGASDDLA-------------------------------------------------------------------- 633 (765)
T ss_dssp EEEECCC-------------------------------------------------------------------------
T ss_pred hhccCCHHHHHH--------------------------------------------------------------------
Confidence 223445554431
Q ss_pred cccCCCCCCChHHHHHHHHHHHH--ccCCCeEEEeCC---CCCCCHHHH-HHHHHHHccCCCeEEEEecCHHHHHhhc
Q 006275 252 DGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEP---TNHLDLDTI-EWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 252 ~~~~~~~~LSGGqkqRv~LAraL--~~~p~iLLLDEP---ts~LD~~~~-~~l~~~L~~~g~tvIivsHd~~~l~~~~ 323 (652)
..+|+|+++++.+|+++ +.+|+++||||| |++||..+. ..+.+.|.+.|+|+|++||+.++. .+|
T Consensus 634 ------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~-~~~ 704 (765)
T 1ewq_A 634 ------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT-ALG 704 (765)
T ss_dssp -------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH-TCC
T ss_pred ------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-Hhh
Confidence 23689999999999999 999999999999 999999886 457787766789999999999887 344
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-21 Score=195.99 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=90.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-------ceecccccccCCCCCCHHHHHHHhhhhc---cHH
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-------NYFEQNQAEALDLDKTVLETVAEAAEDW---RID 521 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-------~~~~~~~~~~~~~~~tv~e~~~~~~~~~---~~~ 521 (652)
.++|+||||||||||+++|+|+..|++|+|.++|.++.. +++.|. ..+.+.+|+.|++.++.... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~--~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEE--GGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeec--CCCcCCceEEechhhhhhcccHHHHH
Confidence 489999999999999999999999999999999876522 233332 34555677877776653211 112
Q ss_pred HHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHH
Q 006275 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRY 601 (652)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~ 601 (652)
.+...+. ....+..+.+||||||||+++|||++. +++||||+++||+...+.+.. +.+. .+||+|.|..+
T Consensus 82 ~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~-L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 82 PIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKH-LSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHH-HHTT-SEEEEEETTGG
T ss_pred HHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHH-HHhc-CcEEEEEeccc
Confidence 2333333 345567778899999999999999886 999999999999988555444 4444 78888888876
Q ss_pred HH
Q 006275 602 FV 603 (652)
Q Consensus 602 ~i 603 (652)
.+
T Consensus 152 ~l 153 (270)
T 3sop_A 152 TM 153 (270)
T ss_dssp GS
T ss_pred cC
Confidence 44
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-20 Score=187.26 Aligned_cols=166 Identities=12% Similarity=0.131 Sum_probs=101.2
Q ss_pred CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHHHHHHhhH
Q 006275 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187 (652)
Q Consensus 108 ~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~ 187 (652)
+++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++.....++|++|+. ++...|+.+++.....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKG 84 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc-CccccCHhHhhhhhcc
Confidence 4567999999999999999999999999999999999976 4443332234699999995 5567788887642110
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHH
Q 006275 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (652)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqR 267 (652)
. . .. .+.+ ..+ ...+.+.++.+. ...++++..||+||+||
T Consensus 85 ~--------------~-~~-~~~~-----------------~~~----~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r 124 (245)
T 2jeo_A 85 Q--------------Y-NF-DHPD-----------------AFD----NDLMHRTLKNIV---EGKTVEVPTYDFVTHSR 124 (245)
T ss_dssp C--------------C-CT-TSGG-----------------GBC----HHHHHHHHHHHH---TTCCEEECCEETTTTEE
T ss_pred C--------------C-CC-CCcc-----------------ccc----HHHHHHHHHHHH---CCCCeecccccccccCc
Confidence 0 0 00 0000 000 011122222221 23456678999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH-HhhcCeE
Q 006275 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL-DQLCTKI 326 (652)
Q Consensus 268 v~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l-~~~~d~i 326 (652)
+++ ++++.+|+++|||||...+|.. +.++ .+.+|+++||+...+ ..+++++
T Consensus 125 ~~~-~~~~~~~~~lilDg~~~~~~~~----l~~~---~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 125 LPE-TTVVYPADVVLFEGILVFYSQE----IRDM---FHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp CSS-CEEECCCSEEEEECTTTTTSHH----HHTT---CSEEEEEECCHHHHHHHHHHHHT
T ss_pred cCc-eEEecCCCEEEEeCccccccHH----HHHh---cCeEEEEECCHHHHHHHHHHHHH
Confidence 988 6888999999999999888864 2222 478999999974444 4455544
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-20 Score=192.53 Aligned_cols=141 Identities=19% Similarity=0.229 Sum_probs=106.7
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCC-CcEEEECCCCceEEEEeccCccCCCC
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVSMSR 176 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-~G~i~~~~~~~~i~~v~Q~~~~~~~~ 176 (652)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.+ +.|++|.+..+
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~--i~~~~~~~~~~--- 74 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP--IEYVFKHKKSI--- 74 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS--CCSCCCCSSSE---
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc--ceeecCCccee---
Confidence 455666542 5899999 9999999999999999999999999999998 9999887654 34554432100
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
+ . -..+|+.
T Consensus 75 ---------v--------------------------------------------~-----------q~~~gl~------- 83 (261)
T 2eyu_A 75 ---------V--------------------------------------------N-----------QREVGED------- 83 (261)
T ss_dssp ---------E--------------------------------------------E-----------EEEBTTT-------
T ss_pred ---------e--------------------------------------------e-----------HHHhCCC-------
Confidence 0 0 0022322
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006275 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~ 331 (652)
..+| |++||+||..+|++||||||| |+++...+.+.. +.|.+|++++|+.+ +...||+++.+..
T Consensus 84 ~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 84 TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 1222 899999999999999999999 999987766554 45899999999988 5578999887653
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-18 Score=186.44 Aligned_cols=75 Identities=19% Similarity=0.372 Sum_probs=66.3
Q ss_pred CCCCCCChHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEE
Q 006275 255 RLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~----~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~ii 327 (652)
+++..||||||||++||++|+ .+|++|||||||++||+..+..+.++|++ .+.++|+|||+...+ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 445679999999999999999 58999999999999999999999988854 367999999997765 6799999
Q ss_pred EEc
Q 006275 328 ETE 330 (652)
Q Consensus 328 ~l~ 330 (652)
.+.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-20 Score=189.34 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=102.1
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEECceecccceecccccccCCC
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQNQAEALDL 503 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~ 503 (652)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|.|.++|.++ .++.+... .+
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i--~~~~~~~~-~~-- 74 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI--EYVFKHKK-SI-- 74 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC--CSCCCCSS-SE--
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc--eeecCCcc-ee--
Confidence 455566543 5899999 9999999999999999999999999999998 99999988654 23322110 00
Q ss_pred CCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH
Q 006275 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583 (652)
Q Consensus 504 ~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~ 583 (652)
.. . ..+++.. ..| |++||++|..+|++|+||||| |+++...+.
T Consensus 75 -----------v~-q---------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l 117 (261)
T 2eyu_A 75 -----------VN-Q---------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL 117 (261)
T ss_dssp -----------EE-E---------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH
T ss_pred -----------ee-H---------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH
Confidence 00 0 0233311 122 899999999999999999999 998876655
Q ss_pred HHHHhcCceEEEEecCHHHHHhhccEEEEE
Q 006275 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEV 613 (652)
Q Consensus 584 ~~l~~~~~tvi~vsHd~~~i~~~~drvi~l 613 (652)
+.. ..+.+|++++|+.+ +..+|||++.|
T Consensus 118 ~~~-~~g~~vl~t~H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 118 RAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 145 (261)
T ss_dssp HHH-HTTCEEEEEECCSS-HHHHHHHHHHT
T ss_pred HHH-ccCCEEEEEeCcch-HHHHHHHHhhh
Confidence 544 34679999999987 45667776544
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-18 Score=161.75 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=71.5
Q ss_pred ccCCCCCCChHHHHHHHHH------HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 006275 253 GDRLVASFSSGWQMRMSLG------KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LA------raL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~ 323 (652)
.++++.+||||||||++|| |||+.+|++|||||||+|||+.++.++.+.|++ .|.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 5788999999999999876 899999999999999999999999999888753 4789999999995 56899
Q ss_pred CeEEEE--cCCeE
Q 006275 324 TKIVET--EMGVS 334 (652)
Q Consensus 324 d~ii~l--~~G~~ 334 (652)
|+++++ ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45544
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=159.76 Aligned_cols=80 Identities=33% Similarity=0.538 Sum_probs=71.6
Q ss_pred hccCcCCCCHHHHHHHHHH------HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhc
Q 006275 537 LDRKVSLLSGGEKARLAFC------KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIV 607 (652)
Q Consensus 537 ~~~~~~~LSgGqrqrv~LA------ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~ 607 (652)
.++++.+||||||||++|| |||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||. .+..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence 4688999999999999876 8999999999999999999999999999999876 35999999999 466889
Q ss_pred cEEEEEe--CCE
Q 006275 608 NRVVEVK--GSN 617 (652)
Q Consensus 608 drvi~l~--~g~ 617 (652)
|++++|+ +|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 9999994 554
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=178.01 Aligned_cols=75 Identities=27% Similarity=0.433 Sum_probs=66.7
Q ss_pred CCCCCCChHHHHHH------HHHHHHccC-CCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCe
Q 006275 255 RLVASFSSGWQMRM------SLGKILLQD-PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 255 ~~~~~LSGGqkqRv------~LAraL~~~-p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~ 325 (652)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|++ .+.+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567999999 999999999999999999999998864 2469999999987 5689999
Q ss_pred EEEEc
Q 006275 326 IVETE 330 (652)
Q Consensus 326 ii~l~ 330 (652)
+++++
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-19 Score=178.78 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=46.8
Q ss_pred ChHHH-HHHHHHHHHcc-------CCCeEEEeCCCCCCCHH-------HH-----HHHH----HHHccCCCeEEEEec--
Q 006275 261 SSGWQ-MRMSLGKILLQ-------DPDLLLLDEPTNHLDLD-------TI-----EWLE----GYLGKQDVPMVIISH-- 314 (652)
Q Consensus 261 SGGqk-qRv~LAraL~~-------~p~iLLLDEPts~LD~~-------~~-----~~l~----~~L~~~g~tvIivsH-- 314 (652)
+++++ +.+..+++++. +|++++|||||++||+. .. ..+. ++.++.|+|||++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 44433 33555555554 99999999999999983 11 1232 333456999999999
Q ss_pred --CHHHHHhhcCeEEEEcCCe
Q 006275 315 --DRAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 315 --d~~~l~~~~d~ii~l~~G~ 333 (652)
+...+..+||+++.+++|.
T Consensus 181 ~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 181 ANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ---------CCSEEEEEEECT
T ss_pred cCcchhhHhhceEEEEEEecC
Confidence 5555989999999998753
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-18 Score=205.84 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=109.4
Q ss_pred CcEEEEEeeeeEe-----CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHH--------hCCCCCCeeEEEECceec
Q 006275 422 RSVVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--------MGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 422 ~~~i~~~~v~~~y-----~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l--------~g~~~p~~G~i~~~g~~~ 488 (652)
...|++++...-+ +++.++++++|++++|++++|+||||||||||||++ .|..-|..+... .
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~-~---- 703 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV-S---- 703 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE-E----
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc-h----
Confidence 3457777765443 235789999999999999999999999999999999 666555443210 0
Q ss_pred ccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH--ccCCCeEE
Q 006275 489 LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM--VKPSTLLV 566 (652)
Q Consensus 489 ~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral--~~~p~lLl 566 (652)
.+. .++.++|.. +.....+|+|++++..+|+++ +.+|+++|
T Consensus 704 ---~~d------------------------------~i~~~ig~~----d~l~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 704 ---IVD------------------------------CILARVGAG----DSQLKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp ---CCS------------------------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred ---HHH------------------------------HHHHhcCch----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 000 112223321 222344888888888888888 99999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHH---h-cCceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 567 LDEPTNHLDIPSKEML-EEAIS---E-YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l-~~~l~---~-~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
|||||+|+|+.....+ ..+++ + .+.|+|++||+.+.. .+||++..+.+|++.
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence 9999999999887666 44433 2 356999999997665 689999888888875
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-19 Score=175.70 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=99.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC--------CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHH
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS--------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~--------~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~ 194 (652)
|++++|+||||||||||+++|+|+++ ++| |.++|. ..++||++|+.. . + ++++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g--~-~~~l------------ 61 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--G--T-RGPL------------ 61 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETT--S--C-EEEE------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecc--c--c-eehh------------
Confidence 78999999999999999999999998 889 776542 346899988741 1 0 0110
Q ss_pred HHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc------ccccCCCCCCChHHHHHH
Q 006275 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA------DDGDRLVASFSSGWQMRM 268 (652)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~------~~~~~~~~~LSGGqkqRv 268 (652)
..+++.. +...++...+|+|||+++
T Consensus 62 -------------------------------------------------~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~ 92 (189)
T 2i3b_A 62 -------------------------------------------------SRVGLEPPPGKRECRVGQYVVDLTSFEQLAL 92 (189)
T ss_dssp -------------------------------------------------EECCCCCCSSSCCEESSSSEECHHHHHTTTT
T ss_pred -------------------------------------------------hcccccCCccccccccceEEEcchHHHHHHH
Confidence 1111110 123445678999999998
Q ss_pred -HHHH---HHccCCCeEEEeC--CCCCCCHHHHHHHHHHHccCCCeEE---EEecCH--HHHHhhcCeEEEEcCCeE
Q 006275 269 -SLGK---ILLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMV---IISHDR--AFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 269 -~LAr---aL~~~p~iLLLDE--Pts~LD~~~~~~l~~~L~~~g~tvI---ivsHd~--~~l~~~~d~ii~l~~G~~ 334 (652)
+|++ |++.+|+|||||| |++.+|....+.|.++|++...+|| .|||+. .+++++++ +.+|++
T Consensus 93 ~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~----~~~~~i 165 (189)
T 2i3b_A 93 PVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRN----RKDVKV 165 (189)
T ss_dssp TTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHT----TCCSEE
T ss_pred HHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHee----cCCcEE
Confidence 4455 6899999999999 9999999999999999986543442 345987 55555444 455554
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-19 Score=181.49 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=99.0
Q ss_pred CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHh
Q 006275 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514 (652)
Q Consensus 435 ~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~ 514 (652)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++...-...++.+. .+...+++.+++...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d---~~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQD---RFYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGG---GGBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCC---cCccccCHhHhhhhh
Confidence 4567999999999999999999999999999999999976 433322100012244443 244567888887653
Q ss_pred hh--------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 006275 515 AE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (652)
Q Consensus 515 ~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 586 (652)
.. .+....+.+.|+.+ ....+.++..||+||+||+++ ++++.+|+++|||||....|.. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l---~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l 150 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNI---VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------I 150 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHH---HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------H
T ss_pred ccCCCCCCcccccHHHHHHHHHHH---HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------H
Confidence 22 12233445555543 233467788999999999988 6888999999999998887753 2
Q ss_pred Hh-cCceEEEEecC-HHHHHhhccEEEEEeCCE
Q 006275 587 SE-YKGTVITVSHD-RYFVKQIVNRVVEVKGSN 617 (652)
Q Consensus 587 ~~-~~~tvi~vsHd-~~~i~~~~drvi~l~~g~ 617 (652)
.+ .+.+|+++||+ ......+++++ ++|+
T Consensus 151 ~~~~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 151 RDMFHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp HTTCSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred HHhcCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 22 35699999997 44445555544 5554
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-18 Score=200.77 Aligned_cols=153 Identities=17% Similarity=0.144 Sum_probs=107.0
Q ss_pred ceEEEeEEEEe-----CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHH--------HcCCCCCCcEEEECCCCceE
Q 006275 97 GVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII--------AGQEEPDSGNVIKAKSNMKI 163 (652)
Q Consensus 97 ~i~v~~ls~~y-----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L--------~G~~~p~~G~i~~~~~~~~i 163 (652)
.|.+++...-+ ++..+++|++|++++|++++|+||||||||||||+| .|.+-|..+.. +
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------~ 702 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------V 702 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------E
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------c
Confidence 47777665433 234589999999999999999999999999999999 56554443221 1
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+.+. +++
T Consensus 703 ~~~d-------------------------------------------------------------------------~i~ 709 (934)
T 3thx_A 703 SIVD-------------------------------------------------------------------------CIL 709 (934)
T ss_dssp ECCS-------------------------------------------------------------------------EEE
T ss_pred hHHH-------------------------------------------------------------------------HHH
Confidence 1111 011
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCeEEEeCCCCCCCHHHHHHH----HHHHcc-CCCeEEEEecCH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEPTNHLDLDTIEWL----EGYLGK-QDVPMVIISHDR 316 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL--~~~p~iLLLDEPts~LD~~~~~~l----~~~L~~-~g~tvIivsHd~ 316 (652)
..+|+. +.....+|+|+++++.+|+++ +.+|+++||||||+|||+.....+ .+.|.+ .|+|+|++||+.
T Consensus 710 ~~ig~~----d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~ 785 (934)
T 3thx_A 710 ARVGAG----DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH 785 (934)
T ss_dssp EECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG
T ss_pred HhcCch----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH
Confidence 222221 122356788888888888888 999999999999999999876555 344443 589999999997
Q ss_pred HHHHhhcCeEEEEcCCeEE
Q 006275 317 AFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~ 335 (652)
+.. .+||++..+.+|++.
T Consensus 786 el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 786 ELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp GGG-GGGGTCTTEEEEEEE
T ss_pred HHH-HHhcccceeEeeEEE
Confidence 766 789998888877653
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-19 Score=206.46 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=99.3
Q ss_pred ceEEEeEEEEe-------CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-CCcEEEECCCCceEEEEec
Q 006275 97 GVKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSNMKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y-------~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-~~G~i~~~~~~~~i~~v~Q 168 (652)
.|.+++..--. ++..+++|++|++++|++++|+||||||||||||+|++..-. ..|.. +......++++.+
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-vpa~~~~i~~~d~ 718 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-VPAEEATIGIVDG 718 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-BSSSEEEEECCSE
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-ccchhhhhhHHHH
Confidence 46666654322 235689999999999999999999999999999999754211 11110 0000011221111
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++..+|+
T Consensus 719 -------------------------------------------------------------------------i~~~ig~ 725 (918)
T 3thx_B 719 -------------------------------------------------------------------------IFTRMGA 725 (918)
T ss_dssp -------------------------------------------------------------------------EEEEC--
T ss_pred -------------------------------------------------------------------------HHHhCCh
Confidence 1112222
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH-H---HH-ccCCCeEEEEecCHHHHHhhc
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE-G---YL-GKQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~-~---~L-~~~g~tvIivsHd~~~l~~~~ 323 (652)
. +...+..+++|+||+|++.++++ +.+|+++||||||+|||+.....+. . .| ++.|+|+|++||+.+.+ .+|
T Consensus 726 ~-d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~ 802 (918)
T 3thx_B 726 A-DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELE 802 (918)
T ss_dssp ---------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHH
T ss_pred H-HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHH
Confidence 1 12233457899999999999999 8999999999999999998766654 3 33 34689999999998776 455
Q ss_pred C
Q 006275 324 T 324 (652)
Q Consensus 324 d 324 (652)
|
T Consensus 803 ~ 803 (918)
T 3thx_B 803 K 803 (918)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-20 Score=191.42 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=83.1
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC-CCCCCcEEEECCCC-------ceEEEEeccCcc
Q 006275 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ-EEPDSGNVIKAKSN-------MKIAFLSQEFEV 172 (652)
Q Consensus 101 ~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~-~~p~~G~i~~~~~~-------~~i~~v~Q~~~~ 172 (652)
.|++++|+++.++++++|+| +|+|+||+|||||+++|.|. +.|++| |.+.|.+ ..+++++|....
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence 47899999999999999998 99999999999999999998 888888 5543321 247888887665
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccc
Q 006275 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (652)
Q Consensus 173 ~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (652)
...+|++|+.... ..... ...+. .+...+. +.
T Consensus 75 ~~~ltv~Dt~g~~--~~~~~-------~e~~~-----------------------------~l~~~l~----------~~ 106 (301)
T 2qnr_A 75 KLRLTVVDTPGYG--DAINC-------RDCFK-----------------------------TIISYID----------EQ 106 (301)
T ss_dssp CEEEEEEEEC--------------------CT-----------------------------THHHHHH----------HH
T ss_pred ccCcchhhhhhhh--hhcCc-------HHHHH-----------------------------HHHHHHH----------HH
Confidence 5566777764211 00000 00000 0000000 11
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCC-CCHHHHHHHHHHHccCCCeEEEEecCHH
Q 006275 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-LDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~-LD~~~~~~l~~~L~~~g~tvIivsHd~~ 317 (652)
.++++.++|||||||+.+|||++ +|++||||++ ||+...+.+..+-.+.+.++|+++||+.
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 23446789999999999999986 9999999985 9998865444432334778888999974
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=178.71 Aligned_cols=75 Identities=28% Similarity=0.402 Sum_probs=66.6
Q ss_pred cCcCCCCHHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC---ceEEEEecCHHHHHhhccEEE
Q 006275 539 RKVSLLSGGEKARLAFCKFMV----KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVSHDRYFVKQIVNRVV 611 (652)
Q Consensus 539 ~~~~~LSgGqrqrv~LAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vsHd~~~i~~~~drvi 611 (652)
+++..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|.++. .++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 334569999999999999999 6899999999999999999999999998763 4999999997665 5799999
Q ss_pred EEe
Q 006275 612 EVK 614 (652)
Q Consensus 612 ~l~ 614 (652)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-19 Score=173.90 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=98.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc--------ceecccccccCCCCCCHHHHHHHhhhhccHH
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------NYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~ 521 (652)
|++++|+||||||||||+++|+|+++ ++| |.++|.+... ++..|.. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~----~g~----------------- 57 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL----SGT----------------- 57 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET----TSC-----------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec----ccc-----------------
Confidence 78999999999999999999999999 899 8888754311 1111110 000
Q ss_pred HHHHHHhhCCCChh------hhccCcCCCCHHHHHHH-HHHH---HHccCCCeEEEeC--CCCCCCHHHHHHHHHHHHhc
Q 006275 522 DIKGLLGRCNFKAD------MLDRKVSLLSGGEKARL-AFCK---FMVKPSTLLVLDE--PTNHLDIPSKEMLEEAISEY 589 (652)
Q Consensus 522 ~~~~~L~~~~l~~~------~~~~~~~~LSgGqrqrv-~LAr---al~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~ 589 (652)
...+..+++... ...++...+|+|||+++ +|++ |++.+|+|||||| |++.+|....+.|.+++..+
T Consensus 58 --~~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 58 --RGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp --EEEEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred --eehhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 001222222111 23445557999999988 4455 6899999999999 99999999999999999876
Q ss_pred CceEE---EEecCH--HHHHhhccEEEEEeCCEEEee
Q 006275 590 KGTVI---TVSHDR--YFVKQIVNRVVEVKGSNLQDY 621 (652)
Q Consensus 590 ~~tvi---~vsHd~--~~i~~~~drvi~l~~g~i~~~ 621 (652)
..+|| .||||. +++.+++ .+++|+|.+.
T Consensus 136 ~~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~~ 168 (189)
T 2i3b_A 136 GTIILGTIPVPKGKPLALVEEIR----NRKDVKVFNV 168 (189)
T ss_dssp SCCEEEECCCCCSSCCTTHHHHH----TTCCSEEEEC
T ss_pred CcEEEEEeecCCCCchHHHHHHe----ecCCcEEEEe
Confidence 54553 556987 5555544 4466676543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-20 Score=190.46 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=77.3
Q ss_pred EeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC-CCCCeeEEEECceeccc-------ceecccccc
Q 006275 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRGGEVLLGEHNVLP-------NYFEQNQAE 499 (652)
Q Consensus 428 ~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~-~~p~~G~i~~~g~~~~~-------~~~~~~~~~ 499 (652)
.||+++|+++.++++++|+| +|+||||+|||||++.|+|. ..|++| |.++|.++.+ .+..+. .
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~--~ 72 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEE--R 72 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC----
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecC--C
Confidence 47899999999999999998 99999999999999999998 889999 7666654321 111121 1
Q ss_pred cCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCC-CCHHH
Q 006275 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH-LDIPS 578 (652)
Q Consensus 500 ~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~-LD~~~ 578 (652)
.....++++|++.+.......+....+...+ .+..++++.++|||||||+.+|||++ +|++||||++ ||+..
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l---~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~ 145 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYI---DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLD 145 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHH---HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHH---HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHH
Confidence 1222334444433221100000001111110 12345778889999999999999986 9999999985 99988
Q ss_pred HHHHHHHHHhcCceEEEEecCHH
Q 006275 579 KEMLEEAISEYKGTVITVSHDRY 601 (652)
Q Consensus 579 ~~~l~~~l~~~~~tvi~vsHd~~ 601 (652)
.+.+.++-.+.+.++|+++||+.
T Consensus 146 ~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 146 VAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHHhcCCEEEEEEeCCCC
Confidence 64443332223568999999974
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-18 Score=197.05 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=104.6
Q ss_pred EEEEEeeeeEe---CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEECceecccceecccccc
Q 006275 424 VVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLGEHNVLPNYFEQNQAE 499 (652)
Q Consensus 424 ~i~~~~v~~~y---~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~ 499 (652)
.|++++...-. +++.+++|+||+ |++++|+||||||||||||+|+|+.. ++.|.+.-.. ....+++.+
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~-~~~i~~v~~---- 621 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAE-EAHLPLFDG---- 621 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSS-EEEECCCSE----
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehh-ccceeeHHH----
Confidence 47888875433 346789999999 99999999999999999999999874 5666542110 000111111
Q ss_pred cCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH--ccCCCeEEEeCC---CCCC
Q 006275 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM--VKPSTLLVLDEP---TNHL 574 (652)
Q Consensus 500 ~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral--~~~p~lLlLDEP---t~~L 574 (652)
++...++.+++ ...+|+|+++++.+|+++ +.+|+++||||| |++|
T Consensus 622 -i~~~~~~~d~l-----------------------------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~l 671 (765)
T 1ewq_A 622 -IYTRIGASDDL-----------------------------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL 671 (765)
T ss_dssp -EEEECCC-----------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHH
T ss_pred -hhccCCHHHHH-----------------------------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCc
Confidence 11112222221 123799999999999999 999999999999 9999
Q ss_pred CHHHH-HHHHHHHHhcCceEEEEecCHHHHHhhc
Q 006275 575 DIPSK-EMLEEAISEYKGTVITVSHDRYFVKQIV 607 (652)
Q Consensus 575 D~~~~-~~l~~~l~~~~~tvi~vsHd~~~i~~~~ 607 (652)
|..+. ..+.+.|.+.+.|+|++||+.++.. ++
T Consensus 672 D~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 672 DGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 99886 5688888776779999999998764 44
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-18 Score=199.42 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=100.7
Q ss_pred EEEEEeeeeEe-------CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEECceecccceecc
Q 006275 424 VVTIKNLEFGY-------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLPNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y-------~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~~~~~~~ 495 (652)
.|.+++...-. +++.+++++||++++|++++|+||||||||||||+++++.-. ..|. +++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-----------~vpa 708 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS-----------YVPA 708 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC-----------CBSS
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc-----------cccc
Confidence 57777765432 246799999999999999999999999999999999754211 0010 0110
Q ss_pred cccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q 006275 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD 575 (652)
.... ... +..++.++|.. +...+..+++|+||+|++.++++ +.+|+++||||||+|||
T Consensus 709 ~~~~-i~~-------------------~d~i~~~ig~~-d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 709 EEAT-IGI-------------------VDGIFTRMGAA-DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp SEEE-EEC-------------------CSEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred hhhh-hhH-------------------HHHHHHhCChH-HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 0000 000 00112233332 33455667899999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHh----cCceEEEEecCHHHHHhhccE
Q 006275 576 IPSKEMLE-EAISE----YKGTVITVSHDRYFVKQIVNR 609 (652)
Q Consensus 576 ~~~~~~l~-~~l~~----~~~tvi~vsHd~~~i~~~~dr 609 (652)
+.....+. .+++. .+.|||++|||.+.+ .++|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhh
Confidence 99887765 44443 356999999998776 34554
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-17 Score=162.12 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=83.0
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-------CeeEEEECceecccceecccccccCCCCCCHHHHHHHhhh--
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-------RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE-- 516 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~-- 516 (652)
.|++|++++|+||||||||||+++|+|...| ..|.+++++.+... .+.+.....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----------------~~~i~~~~~~~ 83 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----------------PERIREIAQNR 83 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----------------HHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----------------HHHHHHHHHHc
Confidence 5899999999999999999999999996555 33355555432100 000000000
Q ss_pred hccHHHHHHHHhhCCCChhhhccCcCCCCHHHH-HHHHHHHHHcc-------CCCeEEEeCCCCCCCHH-------HH--
Q 006275 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK-ARLAFCKFMVK-------PSTLLVLDEPTNHLDIP-------SK-- 579 (652)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqr-qrv~LAral~~-------~p~lLlLDEPt~~LD~~-------~~-- 579 (652)
....+ ..++.+.+ ...++.+++ +.+..+++++. +|++|+|||||+++|+. ..
T Consensus 84 ~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~ 152 (231)
T 4a74_A 84 GLDPD---EVLKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ 152 (231)
T ss_dssp TSCHH---HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHH
T ss_pred CCCHH---HHhhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHH
Confidence 00000 11111111 112344443 33555555554 99999999999999983 11
Q ss_pred ---HHHHHHH----HhcCceEEEEec----CHHHHHhhccEEEEEeCC
Q 006275 580 ---EMLEEAI----SEYKGTVITVSH----DRYFVKQIVNRVVEVKGS 616 (652)
Q Consensus 580 ---~~l~~~l----~~~~~tvi~vsH----d~~~i~~~~drvi~l~~g 616 (652)
..+.+.| ++.+.|||+||| +-..+..+||++++|++|
T Consensus 153 ~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 153 QKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 1333333 345679999999 555599999999999864
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.1e-20 Score=181.25 Aligned_cols=143 Identities=15% Similarity=0.071 Sum_probs=103.7
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccC--CCCCHHHHHHHhhHHHHHHHHHHH
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLE 197 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~--~~~Tv~e~i~~~~~~~~~~~~~~~ 197 (652)
.++|+++||+||||||||||+++|+|++.| .++|++|++... ...|+.++....+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~-------- 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------RVALLPMDHYYKDLGHLPLEERLRVNYDHP-------- 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSG--------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------CeEEEecCccccCcccccHHHhcCCCCCCh--------
Confidence 578999999999999999999999998765 488999997654 3457777643211100
Q ss_pred HHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHH----HHHHHHHHH
Q 006275 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW----QMRMSLGKI 273 (652)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq----kqRv~LAra 273 (652)
......++.+.++.+++. +..++++.++|+|| +||+++|++
T Consensus 63 ----------------------------------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~~~~ 107 (211)
T 3asz_A 63 ----------------------------------DAFDLALYLEHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRPAPV 107 (211)
T ss_dssp ----------------------------------GGBCHHHHHHHHHHHHTT-CCEEECCEETTTTEECSSCEEECCCSE
T ss_pred ----------------------------------hhhhHHHHHHHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCCCcE
Confidence 000012233344444554 34566789999996 478899999
Q ss_pred HccCCCeEEEeCCCCC-------CCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006275 274 LLQDPDLLLLDEPTNH-------LDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (652)
Q Consensus 274 L~~~p~iLLLDEPts~-------LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (652)
++.+|+++++||||++ ||+.....+.+.++ +.|.|++.++|+..
T Consensus 108 li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 108 VILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999 89988777776653 35889999999853
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-18 Score=175.98 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=97.0
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------ceEEEEeccCccCCCCCHHHHHHHh
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSRTVREEFMSA 185 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------------~~i~~v~Q~~~~~~~~Tv~e~i~~~ 185 (652)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.+ ..++|++|++...+..++++|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999987643 2488999998776666777776421
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHH
Q 006275 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (652)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqk 265 (652)
.. .. .+ ..+++..|..+ ..+ ..++..++
T Consensus 181 ~~----------------~~------------------------~d--------~~llDt~G~~~-~~~---~~~~eLs~ 208 (304)
T 1rj9_A 181 KA----------------RG------------------------YD--------LLFVDTAGRLH-TKH---NLMEELKK 208 (304)
T ss_dssp HH----------------HT------------------------CS--------EEEECCCCCCT-TCH---HHHHHHHH
T ss_pred Hh----------------CC------------------------CC--------EEEecCCCCCC-chH---HHHHHHHH
Confidence 00 00 00 01233334321 112 22344558
Q ss_pred HHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHH
Q 006275 266 MRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (652)
Q Consensus 266 qRv~LAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~ 317 (652)
||++||||++.+|+ +|.|| |+++.+.. ..+..+-+..+.|+|++||+.+
T Consensus 209 ~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 209 VKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHHHHcCCcEEEEECCcc
Confidence 99999999999999 66666 66665432 2333333345899999999843
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=158.92 Aligned_cols=166 Identities=11% Similarity=0.102 Sum_probs=104.9
Q ss_pred eeeeeceEE-EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccc-cccCCCCCCHHHHHHHh
Q 006275 437 RLLFNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ-AEALDLDKTVLETVAEA 514 (652)
Q Consensus 437 ~~vl~~isl-~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~-~~~~~~~~tv~e~~~~~ 514 (652)
.+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.+.+.+.+.....+.... ...........+++..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLII- 87 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEE-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEE-
Confidence 345777776 7999999999999999999999999998877777776644322110000000 0000000000000000
Q ss_pred hhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC--eEEEeCCCCCC--CHHHHHHHHHHHHh--
Q 006275 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHL--DIPSKEMLEEAISE-- 588 (652)
Q Consensus 515 ~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~--lLlLDEPt~~L--D~~~~~~l~~~l~~-- 588 (652)
.... ...++ .. ......|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|.+
T Consensus 88 ~~~~--------~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~ 154 (235)
T 2w0m_A 88 IDAL--------MKEKE--DQ---WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVL 154 (235)
T ss_dssp EECC--------C------CT---TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHH
T ss_pred Eecc--------ccccC--ce---eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHH
Confidence 0000 00000 00 0112359999999888888888999 99999999888 99887777776654
Q ss_pred --cCceEEEEecCH--------HHHHhhccEEEEEeCC
Q 006275 589 --YKGTVITVSHDR--------YFVKQIVNRVVEVKGS 616 (652)
Q Consensus 589 --~~~tvi~vsHd~--------~~i~~~~drvi~l~~g 616 (652)
.+.|||++||+. ..+..+||+|++|+..
T Consensus 155 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 155 NKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 456999999999 5588999999999753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=158.89 Aligned_cols=168 Identities=13% Similarity=0.132 Sum_probs=104.6
Q ss_pred eeeeeeeeE-EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHHHHHHhhHH
Q 006275 110 VTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (652)
Q Consensus 110 ~~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~ 188 (652)
.+.|+++.. .+++|++++|+||||||||||++.|++...+..|.|.+ +..+. +. +.+...+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~---------~~~~~------~~-~~~~~~~-- 70 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY---------VTTEE------SR-DSIIRQA-- 70 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE---------EESSS------CH-HHHHHHH--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE---------EEccc------CH-HHHHHHH--
Confidence 456788887 89999999999999999999999999887776665543 33221 11 1111000
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHH
Q 006275 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (652)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv 268 (652)
. .+. .+... +.. .....++ .....++ . .. .....|.++.++.
T Consensus 71 --------~----~~~---~~~~~---~~~------~~~~~~~---------~~~~~~~-~-~~---~~~~~~~~~~~~~ 112 (235)
T 2w0m_A 71 --------K----QFN---WDFEE---YIE------KKLIIID---------ALMKEKE-D-QW---SLVNLTPEELVNK 112 (235)
T ss_dssp --------H----HTT---CCCGG---GBT------TTEEEEE---------CCC-----C-TT---BCSSCCHHHHHHH
T ss_pred --------H----Hhc---chHHH---Hhh------CCEEEEe---------ccccccC-c-ee---eecCCCHHHHHHH
Confidence 0 000 00000 000 0000000 0000000 0 00 1134599999998
Q ss_pred HHHHHHccCCC--eEEEeCCCCCC--CHHHHHHHHHHH----ccCCCeEEEEecCH--------HHHHhhcCeEEEEcCC
Q 006275 269 SLGKILLQDPD--LLLLDEPTNHL--DLDTIEWLEGYL----GKQDVPMVIISHDR--------AFLDQLCTKIVETEMG 332 (652)
Q Consensus 269 ~LAraL~~~p~--iLLLDEPts~L--D~~~~~~l~~~L----~~~g~tvIivsHd~--------~~l~~~~d~ii~l~~G 332 (652)
..+.+...+|+ +|++||||+++ |+.....+.+.| ++.|+|||+++|+. ..+.++||+|++|+..
T Consensus 113 ~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 113 VIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88888888999 99999999888 987766665554 45689999999999 5588999999999865
Q ss_pred e
Q 006275 333 V 333 (652)
Q Consensus 333 ~ 333 (652)
.
T Consensus 193 ~ 193 (235)
T 2w0m_A 193 I 193 (235)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-17 Score=159.58 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=97.7
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC-----CCCeeEEEECc-------eec--c
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLLGE-------HNV--L 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~-----~p~~G~i~~~g-------~~~--~ 489 (652)
+|+++|+++.|+ ..++++ |++.+|.+++|+|+||||||||++.|+|.. .|+.|++...+ ..+ .
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 489999999997 577888 899999999999999999999999999998 78888765321 111 1
Q ss_pred cceecccccccCCCCC-C-HHHHHHHhh----------------h--hccHHHHHHHHhhCCCChhhhccCcCCCCHHHH
Q 006275 490 PNYFEQNQAEALDLDK-T-VLETVAEAA----------------E--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~-t-v~e~~~~~~----------------~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqr 549 (652)
+++.... ..... . ....+.... . .....++..++...++..-....++..+|+||+
T Consensus 80 ~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~ 155 (210)
T 1pui_A 80 PGYGYAE----VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGAR 155 (210)
T ss_dssp CCCC----------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHH
T ss_pred cCCcccc----cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhH
Confidence 1110000 00000 0 000111000 0 001224556666777653334677889999999
Q ss_pred HH-HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q 006275 550 AR-LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589 (652)
Q Consensus 550 qr-v~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 589 (652)
|| +..+++++.+|+++++|||||++|..+...+.+.|.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 156 KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 99 89999999999999999999999999999999988754
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-18 Score=171.82 Aligned_cols=142 Identities=10% Similarity=0.004 Sum_probs=103.1
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhh---hhccHHHH
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA---EDWRIDDI 523 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~---~~~~~~~~ 523 (652)
.++|+++||+||||||||||+++|+|++.|. + .++.++.........++.++..... .......+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~---i---------~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGER---V---------ALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALY 70 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGG---E---------EEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCC---e---------EEEecCccccCcccccHHHhcCCCCCChhhhhHHHH
Confidence 5789999999999999999999999998761 1 2222221111113456777654422 12233456
Q ss_pred HHHHhhCCCChhhhccCcCCCCHHHH----HHHHHHHHHccCCCeEEEeCCCCC-------CCHHHHHHHHHHHHhc---
Q 006275 524 KGLLGRCNFKADMLDRKVSLLSGGEK----ARLAFCKFMVKPSTLLVLDEPTNH-------LDIPSKEMLEEAISEY--- 589 (652)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqr----qrv~LAral~~~p~lLlLDEPt~~-------LD~~~~~~l~~~l~~~--- 589 (652)
.+.++.+++. +..+.++.++|+||+ ||+++|++++.+|.++++||||++ ||+.....+.+.+.+.
T Consensus 71 ~~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~ 149 (211)
T 3asz_A 71 LEHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLE 149 (211)
T ss_dssp HHHHHHHHTT-CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 6677777664 445678889999974 788999999999999999999999 9999988888887653
Q ss_pred -CceEEEEecCHH
Q 006275 590 -KGTVITVSHDRY 601 (652)
Q Consensus 590 -~~tvi~vsHd~~ 601 (652)
+.|++.++|+..
T Consensus 150 ~g~t~~~~~~~~~ 162 (211)
T 3asz_A 150 RGRSLEGVVAQYL 162 (211)
T ss_dssp SCCCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 569999999853
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-17 Score=189.73 Aligned_cols=158 Identities=13% Similarity=0.050 Sum_probs=100.4
Q ss_pred ceEEEeEEEEe-----CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEECCCCceEEEEeccC
Q 006275 97 GVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEF 170 (652)
Q Consensus 97 ~i~v~~ls~~y-----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-p~~G~i~~~~~~~~i~~v~Q~~ 170 (652)
.|.+++..--. ++..+++|++|+ ++|++++|+||||||||||||+|+|+.. ...|.. +......++++.|
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~~~i~~~~~-- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDR-- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCE--
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhcccceeHHH--
Confidence 46666653111 345689999999 9999999999999999999999999743 233421 1111234555555
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc
Q 006275 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (652)
Q Consensus 171 ~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (652)
++...++.+++.
T Consensus 653 -i~~~~~~~d~l~------------------------------------------------------------------- 664 (800)
T 1wb9_A 653 -IFTRVGAADDLA------------------------------------------------------------------- 664 (800)
T ss_dssp -EEEEEC-------------------------------------------------------------------------
T ss_pred -HHhhCCHHHHHH-------------------------------------------------------------------
Confidence 223334444431
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHH----HHHHHcc-CCCeEEEEecCHHHHHhhcCe
Q 006275 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW----LEGYLGK-QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 251 ~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~----l~~~L~~-~g~tvIivsHd~~~l~~~~d~ 325 (652)
....++|+|+++ ++.+...+.+|+++|||||++|+|+..... +.+.|.+ .|+++|++||+.+.. .+||+
T Consensus 665 ----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~ 738 (800)
T 1wb9_A 665 ----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEK 738 (800)
T ss_dssp ---------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred ----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhh
Confidence 112456777764 444455689999999999988888754433 3344544 589999999999876 58886
Q ss_pred EEEEcCC
Q 006275 326 IVETEMG 332 (652)
Q Consensus 326 ii~l~~G 332 (652)
+..+.++
T Consensus 739 ~~~v~n~ 745 (800)
T 1wb9_A 739 MEGVANV 745 (800)
T ss_dssp STTEEEE
T ss_pred hhceEEE
Confidence 5444433
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.62 E-value=8.6e-19 Score=199.99 Aligned_cols=152 Identities=20% Similarity=0.323 Sum_probs=90.8
Q ss_pred ceEEEeEEEEeCC--eeeeeee----------eEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-CCcEEEECCCC---
Q 006275 97 GVKLENISKSYKG--VTVLKDV----------TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN--- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~--~~vL~~v----------sl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-~~G~i~~~~~~--- 160 (652)
.+.++|+++.|+. +++++.+ +++++. +|||||||||||||+++|+|+..| ++|.|.++|..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4789999999975 3355444 366665 999999999999999999999988 79998876532
Q ss_pred ----------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhC
Q 006275 161 ----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (652)
Q Consensus 161 ----------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (652)
..|+|++|++.+++..||++|+..+... ..
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~--------------~~-------------------------- 126 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA--------------IA-------------------------- 126 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH--------------HH--------------------------
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH--------------hc--------------------------
Confidence 3589999998887777888887421100 00
Q ss_pred ChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCC------CCCCCHHHHHHHHHHHcc
Q 006275 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP------TNHLDLDTIEWLEGYLGK 304 (652)
Q Consensus 231 ~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEP------ts~LD~~~~~~l~~~L~~ 304 (652)
....++. ++++.++.+....|+++|+||| |+|||+..+..+.+++++
T Consensus 127 ------------~~~~~~s---------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 127 ------------GEGMGIS---------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp ------------CSSSCCC---------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred ------------CCccccc---------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 0000111 1222233334468999999999 999999998877766532
Q ss_pred -----CCCeEEEEecCHHH
Q 006275 305 -----QDVPMVIISHDRAF 318 (652)
Q Consensus 305 -----~g~tvIivsHd~~~ 318 (652)
.+.++++++|+.+.
T Consensus 180 ~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 180 YIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp HTTSSSCCEEEEEESSSCT
T ss_pred HHhcCCCCceEEEeccchh
Confidence 36788999999763
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=142.86 Aligned_cols=92 Identities=16% Similarity=0.287 Sum_probs=76.3
Q ss_pred ccCCCCCCChHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006275 253 GDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~----~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (652)
..+++..||||||||++||++|+ .+|+++||||||+|||+.++..+.++|++ .+.++|+|||+...+ ..||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEE
Confidence 34567899999999999999997 45799999999999999999999988853 357899999998765 789999
Q ss_pred EEE--cCCeEEEecCChHHHH
Q 006275 327 VET--EMGVSRTYEGNYSQYV 345 (652)
Q Consensus 327 i~l--~~G~~~~~~g~~~~~~ 345 (652)
+.+ .+|.......++.++.
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHH
Confidence 855 5787776766665543
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-17 Score=164.00 Aligned_cols=180 Identities=11% Similarity=0.083 Sum_probs=96.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCC-----CCCCcEEEECCCC---ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN---MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~-----~p~~G~i~~~~~~---~~i~~v~Q 168 (652)
+|+++|++|.|+ .+++++ |.+++|..++|+|+||||||||++.|+|.. .|+.|.+...+.- ..+-+ -.
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l-~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL-VD 78 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE-EE
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE-EE
Confidence 489999999997 467877 889999999999999999999999999998 7888876532100 01111 11
Q ss_pred cCccCC-CC--CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 169 EFEVSM-SR--TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 169 ~~~~~~-~~--Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
.|.... .. ..++.+. . ....+........ ..-++... .......+..+.+++..
T Consensus 79 t~G~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~-~~~~v~d~------------~~~~~~~~~~~~~~~~~ 135 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQ----R------ALGEYLEKRQSLQ-GLVVLMDI------------RHPLKDLDQQMIEWAVD 135 (210)
T ss_dssp CCCCC------CCHHHHH----H------HHHHHHHHCTTEE-EEEEEEET------------TSCCCHHHHHHHHHHHH
T ss_pred CcCCcccccCHHHHHHHH----H------HHHHHHHhhhccc-EEEEEEEC------------CCCCchhHHHHHHHHHH
Confidence 221100 00 0001100 0 0011110000000 00000000 00001112234455566
Q ss_pred cCCCcccccCCCCCCChHHHHH-HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q 006275 246 LGFTADDGDRLVASFSSGWQMR-MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqR-v~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (652)
.+++.-....++..+|+||+|| +..+++++.+|+++++|||||++|......+.+.|.
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 6765333345578899999999 899999999999999999999999999998887764
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-16 Score=169.96 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=86.7
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHH
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~ 524 (652)
.+.+|++++|+||||||||||+++|+|+++|+ +|.|...+.++. +...... .. ....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e--~~~~~~~-~~-------------v~q~------ 176 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE--FVHESKK-CL-------------VNQR------ 176 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC--SCCCCSS-SE-------------EEEE------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH--hhhhccc-cc-------------eeee------
Confidence 67899999999999999999999999999987 566654332221 1100000 00 0000
Q ss_pred HHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHH
Q 006275 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVK 604 (652)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~ 604 (652)
......++..+ +||+||..+|++|+||||| |.++...+.++.. .+.+||+++|+.+.+
T Consensus 177 -------------~~~~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~-~G~~vl~t~H~~~~~- 234 (356)
T 3jvv_A 177 -------------EVHRDTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAAE-TGHLVFGTLHTTSAA- 234 (356)
T ss_dssp -------------EBTTTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHH-TTCEEEEEESCSSHH-
T ss_pred -------------eeccccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHh-cCCEEEEEEccChHH-
Confidence 00000122222 9999999999999999999 7887776666543 367999999999988
Q ss_pred hhccEEEEEeC
Q 006275 605 QIVNRVVEVKG 615 (652)
Q Consensus 605 ~~~drvi~l~~ 615 (652)
..+||++.|..
T Consensus 235 ~~~dRli~l~~ 245 (356)
T 3jvv_A 235 KTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHhhhcC
Confidence 67898887743
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-16 Score=170.52 Aligned_cols=138 Identities=16% Similarity=0.164 Sum_probs=97.5
Q ss_pred EeEEEEeC--CeeeeeeeeE-------EEECCCEEEEECCCCccHHHHHHHHHcCCCCC-CcEEEECCCCce------EE
Q 006275 101 ENISKSYK--GVTVLKDVTW-------EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMK------IA 164 (652)
Q Consensus 101 ~~ls~~y~--~~~vL~~vsl-------~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-~G~i~~~~~~~~------i~ 164 (652)
..++++|- ..+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|........ .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 45666662 2345666665 67888999999999999999999999999987 566543211110 01
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
+++|..
T Consensus 172 ~v~q~~-------------------------------------------------------------------------- 177 (356)
T 3jvv_A 172 LVNQRE-------------------------------------------------------------------------- 177 (356)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 111110
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcC
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d 324 (652)
.+ ...++-.+ +||+||..+|++||+|||| |.++.+.+.+.. ..|.|||+++|+.+.+ ..||
T Consensus 178 -~~---------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~d 238 (356)
T 3jvv_A 178 -VH---------RDTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTID 238 (356)
T ss_dssp -BT---------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHH
T ss_pred -ec---------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHH
Confidence 00 01122222 9999999999999999999 888877766654 4589999999999988 7899
Q ss_pred eEEEEcC
Q 006275 325 KIVETEM 331 (652)
Q Consensus 325 ~ii~l~~ 331 (652)
|++.|..
T Consensus 239 Rli~l~~ 245 (356)
T 3jvv_A 239 RVVDVFP 245 (356)
T ss_dssp HHHHTSC
T ss_pred HHhhhcC
Confidence 9987754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-17 Score=179.28 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=97.4
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc--EEEECCC----CceEEEEecc
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKAKS----NMKIAFLSQE 169 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G--~i~~~~~----~~~i~~v~Q~ 169 (652)
+.|.++|++++|+++.++++++|+| +|||+||||||||+++|+|...+..| .+.+... ...++|++|.
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 83 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC---
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec
Confidence 3589999999999888999999998 99999999999999999999875444 1111111 1247888888
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+...+||+|++.... .... . ..+ ..+.+.+.
T Consensus 84 ~~~~~~Ltv~Dt~g~~~--~~~~----~---~~~---------------------------------~~i~~~i~----- 116 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGD--AVDN----S---NCW---------------------------------QPVIDYID----- 116 (418)
T ss_dssp ---CEEEEEEECC--------------------C---------------------------------HHHHHHHH-----
T ss_pred CCcccceeeeechhhhh--hccc----h---hhH---------------------------------HHHHHHHH-----
Confidence 77666778887753110 0000 0 000 00000000
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCC---eEEEeCCC-CCCCHHHHHHHHHHHccCCCeEEEEecCHHH
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPD---LLLLDEPT-NHLDLDTIEWLEGYLGKQDVPMVIISHDRAF 318 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~---iLLLDEPt-s~LD~~~~~~l~~~L~~~g~tvIivsHd~~~ 318 (652)
..++.+++||++||||++.+|+ +|++|||| .+||+....++.. |.. +.+||+|.|..+.
T Consensus 117 --------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~-L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 117 --------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR-LHE-KVNIIPLIAKADT 179 (418)
T ss_dssp --------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHH-HTT-TSEEEEEEESTTS
T ss_pred --------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHH-Hhc-cCcEEEEEEcccC
Confidence 1234566789999999999999 99999999 6999988766654 443 7889998886543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=156.44 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=91.5
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC----CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHH
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~----~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~ 195 (652)
+++|++++|+||||||||||++.|++.+. .|.+.. |. ...+.|+..+.. . +.+.. +
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~e~~------~-~~~~~----------r 86 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPAEDP------P-TAIHH----------R 86 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEESSSC------H-HHHHH----------H
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEECCCC------H-HHHHH----------H
Confidence 78999999999999999999999998654 354422 21 235677655421 1 11100 0
Q ss_pred HHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 006275 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (652)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~ 275 (652)
+.. +.. .++ .....++++.+++. +..++++..||+||+|++ ++++
T Consensus 87 ~~~----~g~-----------------------~~~----~~~~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~ 131 (279)
T 1nlf_A 87 LHA----LGA-----------------------HLS----AEERQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAA 131 (279)
T ss_dssp HHH----HHT-----------------------TSC----HHHHHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHH
T ss_pred HHH----HHh-----------------------hcC----hhhhhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhc
Confidence 000 000 000 01123345555654 345677899999998765 6888
Q ss_pred cCCCeEEEeCCCC--CCCHHHH---HHHHHH----HccCCCeEEEEecCHHHHH
Q 006275 276 QDPDLLLLDEPTN--HLDLDTI---EWLEGY----LGKQDVPMVIISHDRAFLD 320 (652)
Q Consensus 276 ~~p~iLLLDEPts--~LD~~~~---~~l~~~----L~~~g~tvIivsHd~~~l~ 320 (652)
.+|+++|+||||+ ++|.... ..+.+. .++.|+|||+++|+.....
T Consensus 132 ~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 8999999999999 9997432 444333 3456999999999987653
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=142.53 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=75.8
Q ss_pred hccCcCCCCHHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEE
Q 006275 537 LDRKVSLLSGGEKARLAFCKFMV----KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRV 610 (652)
Q Consensus 537 ~~~~~~~LSgGqrqrv~LAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drv 610 (652)
..+++..||||||||++||++++ .+|+++||||||++||+.+...+.+.|+++. .++|+|||+.... .+||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEE
Confidence 35667889999999999999997 4579999999999999999999999998763 5899999998665 679999
Q ss_pred EEE--eCCEEEeecCChhhHh
Q 006275 611 VEV--KGSNLQDYAGDYNVCF 629 (652)
Q Consensus 611 i~l--~~g~i~~~~g~~~~~~ 629 (652)
+.+ .+|....+..+.+++.
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHH
Confidence 866 4776554555555543
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-16 Score=165.33 Aligned_cols=141 Identities=16% Similarity=0.099 Sum_probs=92.2
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc----------------ceecccccccCCCCCCHHHHHH
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEALDLDKTVLETVA 512 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~~~~~~~~~~~~tv~e~~~ 512 (652)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.. .++.|. ...++..++.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~--~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGP--EGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCC--TTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeC--CCCCHHHHHHHHHH
Confidence 689999999999999999999999999999999998877521 122222 23344456777776
Q ss_pred HhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 006275 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEMLEEAISEYK 590 (652)
Q Consensus 513 ~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~~ 590 (652)
.+...... ..+++..|.. +..... ++..++||++||||++.+|+ +|.|| |+++.+.. ..+.+.-+..+
T Consensus 179 ~~~~~~~d---~~llDt~G~~-~~~~~~---~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~~~~~ 248 (304)
T 1rj9_A 179 AMKARGYD---LLFVDTAGRL-HTKHNL---MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFHEAVG 248 (304)
T ss_dssp HHHHHTCS---EEEECCCCCC-TTCHHH---HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHHHHHC
T ss_pred HHHhCCCC---EEEecCCCCC-CchHHH---HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHHHHcC
Confidence 53211000 0123333332 112223 45556999999999999999 66677 55554422 23333333457
Q ss_pred ceEEEEecCHH
Q 006275 591 GTVITVSHDRY 601 (652)
Q Consensus 591 ~tvi~vsHd~~ 601 (652)
.|+|++||+..
T Consensus 249 ~t~iivTh~d~ 259 (304)
T 1rj9_A 249 LTGVIVTKLDG 259 (304)
T ss_dssp CSEEEEECTTS
T ss_pred CcEEEEECCcc
Confidence 79999999854
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-16 Score=167.16 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=88.9
Q ss_pred eeeeee-eEEEECCCEEEEECCCCccHHHHHHHHHcCC--CCCC----cE-EEECCCCceEEEEeccCccCCCCCHHHHH
Q 006275 111 TVLKDV-TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDS----GN-VIKAKSNMKIAFLSQEFEVSMSRTVREEF 182 (652)
Q Consensus 111 ~vL~~v-sl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p~~----G~-i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i 182 (652)
+.|+.+ ++.|++|++++|+||||||||||++.|+|.. +|++ |. |++++... . . .+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~----------~----~-~~~i 182 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT----------F----R-PERI 182 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC----------C----C-HHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC----------C----C-HHHH
Confidence 345554 6899999999999999999999999999998 6776 45 45443221 0 0 1111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCCh
Q 006275 183 MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262 (652)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSG 262 (652)
...+ .... +.. . .+++.+-+ .. ..-|.
T Consensus 183 ~~i~-----------------q~~~----------------------~~~---~----~v~~ni~~----~~---~~~~~ 209 (349)
T 1pzn_A 183 REIA-----------------QNRG----------------------LDP---D----EVLKHIYV----AR---AFNSN 209 (349)
T ss_dssp HHHH-----------------HTTT----------------------CCH---H----HHGGGEEE----EE---CCSHH
T ss_pred HHHH-----------------HHcC----------------------CCH---H----HHhhCEEE----Ee---cCChH
Confidence 1000 0000 000 0 11111111 00 01257
Q ss_pred HHHHHHHHHHHHc-------cCCCeEEEeCCCCCCCHHH------------HHHHHHH----HccCCCeEEEEecCHHHH
Q 006275 263 GWQMRMSLGKILL-------QDPDLLLLDEPTNHLDLDT------------IEWLEGY----LGKQDVPMVIISHDRAFL 319 (652)
Q Consensus 263 GqkqRv~LAraL~-------~~p~iLLLDEPts~LD~~~------------~~~l~~~----L~~~g~tvIivsHd~~~l 319 (652)
+|+|++.++++++ .+|++||+||||++||+.. ...+... .++.++|||+++|.....
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 8889999999888 6899999999999999862 2233332 345799999999998765
Q ss_pred HhhcCeEEEEcCCeE
Q 006275 320 DQLCTKIVETEMGVS 334 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~ 334 (652)
..+++.......|.+
T Consensus 290 ~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 290 DAFFGDPTRPIGGHI 304 (349)
T ss_dssp ------------CCC
T ss_pred ccccCCccccCCcce
Confidence 443333444444443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-15 Score=152.92 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=91.7
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----cceecccccccCCCCCCHH---HHHHHhhhhcc
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----PNYFEQNQAEALDLDKTVL---ETVAEAAEDWR 519 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----~~~~~~~~~~~~~~~~tv~---e~~~~~~~~~~ 519 (652)
+++|++++|+||||||||||++.+++.+. .|.+.+ |.+.. ..|+.. ..+.. ..+........
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~--------e~~~~~~~~r~~~~g~~~~ 95 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPA--------EDPPTAIHHRLHALGAHLS 95 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEES--------SSCHHHHHHHHHHHHTTSC
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEEC--------CCCHHHHHHHHHHHHhhcC
Confidence 78999999999999999999999998654 354422 22211 112211 11221 12211111122
Q ss_pred HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC--CCCHHHH---HHHHHHHH----hcC
Q 006275 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN--HLDIPSK---EMLEEAIS----EYK 590 (652)
Q Consensus 520 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~--~LD~~~~---~~l~~~l~----~~~ 590 (652)
.....++++.+.+. +..++++..||+||+|++ ++++.+|+++|+||||+ ++|.... ..+.+.|. +.+
T Consensus 96 ~~~~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g 171 (279)
T 1nlf_A 96 AEERQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG 171 (279)
T ss_dssp HHHHHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcC
Confidence 33345567777764 445778999999998765 68888999999999999 9997544 44445444 346
Q ss_pred ceEEEEecCHHHHH
Q 006275 591 GTVITVSHDRYFVK 604 (652)
Q Consensus 591 ~tvi~vsHd~~~i~ 604 (652)
.|||+++|+.....
T Consensus 172 ~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 172 CSIVFLHHASKGAA 185 (279)
T ss_dssp CEEEEEEEC-----
T ss_pred CEEEEEecCCCccc
Confidence 79999999988764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-16 Score=180.78 Aligned_cols=169 Identities=17% Similarity=0.212 Sum_probs=99.1
Q ss_pred EEEEEeeeeEeCC--eeeeece----------EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEECceeccc
Q 006275 424 VVTIKNLEFGYED--RLLFNRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLP 490 (652)
Q Consensus 424 ~i~~~~v~~~y~~--~~vl~~i----------sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~~ 490 (652)
.++++|+++.|++ +++++.+ +++++. +||+|||||||||||++|+|+..| ++|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5889999999975 3444444 366654 999999999999999999999988 79999999977411
Q ss_pred -------------ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHH
Q 006275 491 -------------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 491 -------------~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAra 557 (652)
++..| ...+.+..++.+++..... .+...+ . .+| ++++.++.+
T Consensus 87 ~~~~~~~~~~~~i~~v~Q--~~~l~~~~tv~e~i~~~~~---------~~~~~~--~--------~~s---~~~i~l~i~ 142 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDY--EIEISDASEVEKEINKAQN---------AIAGEG--M--------GIS---HELITLEIS 142 (608)
T ss_dssp EECSSSSCCEEEESCC-----CCCCCHHHHHTTHHHHHH---------HHHCSS--S--------CCC---SCCEEEEEE
T ss_pred ecCCccccceeEEeeecc--cccCCCHHHHHHHHHHHHH---------HhcCCc--c--------ccc---hHHHHHHhc
Confidence 12222 2334555677777654321 111100 0 011 122334444
Q ss_pred HccCCCeEEEeCC------CCCCCHHHHHHHHHHHHhc-----CceEEEEecCHHHH--------Hhh----ccEEEEEe
Q 006275 558 MVKPSTLLVLDEP------TNHLDIPSKEMLEEAISEY-----KGTVITVSHDRYFV--------KQI----VNRVVEVK 614 (652)
Q Consensus 558 l~~~p~lLlLDEP------t~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~i--------~~~----~drvi~l~ 614 (652)
....|+++|+||| |++||+..+..+.+++.++ ..++++++||++.+ ..+ ...|+++.
T Consensus 143 ~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlT 222 (608)
T 3szr_A 143 SRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILT 222 (608)
T ss_dssp ESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEE
T ss_pred CCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEec
Confidence 5568999999999 9999999999999999875 24889999997632 222 24577887
Q ss_pred CCEEE
Q 006275 615 GSNLQ 619 (652)
Q Consensus 615 ~g~i~ 619 (652)
++.+.
T Consensus 223 K~Dlv 227 (608)
T 3szr_A 223 KPDLV 227 (608)
T ss_dssp CGGGS
T ss_pred chhhc
Confidence 76554
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-15 Score=177.78 Aligned_cols=161 Identities=16% Similarity=0.095 Sum_probs=98.2
Q ss_pred EEEEEeeeeEe-----CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEECceecccceecccc
Q 006275 424 VVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLPNYFEQNQ 497 (652)
Q Consensus 424 ~i~~~~v~~~y-----~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~~~~~~~~~ 497 (652)
.|.+++...-. +++.++++++|+ ++|++++|+||||||||||||+|+|+..+ ..|... .......+++.+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~v-pa~~~~i~~~~~-- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV-PAQKVEIGPIDR-- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB-SSSEEEECCCCE--
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCccc-chhcccceeHHH--
Confidence 46777654221 356789999999 99999999999999999999999997422 122100 000000001110
Q ss_pred cccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q 006275 498 AEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577 (652)
Q Consensus 498 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~ 577 (652)
++...++.+++ ....+.+|+|+++ ++.+...+.+|+++|||||++|+|+.
T Consensus 653 ---i~~~~~~~d~l--------------------------~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 653 ---IFTRVGAADDL--------------------------ASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ---EEEEEC-------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred ---HHhhCCHHHHH--------------------------HhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 11111222221 1223346777765 44455568999999999998888876
Q ss_pred HHHHH-HHHH---Hh-cCceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 578 SKEML-EEAI---SE-YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 578 ~~~~l-~~~l---~~-~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
....+ ..++ .+ .+.++|++||+.+.+ .+||++..+.++++.
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLD 748 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEE
Confidence 65443 3443 33 366999999999876 478877666666553
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-16 Score=170.84 Aligned_cols=161 Identities=15% Similarity=0.117 Sum_probs=91.7
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEECcee-cc---cceeccc
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHN-VL---PNYFEQN 496 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~~-~~---~~~~~~~ 496 (652)
++|+++||+++|+++.+++++||+| +|+|+||||||||+++|+|...|..| .+.+++.. .. .++..+.
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 83 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC---
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec
Confidence 4599999999999889999999998 99999999999999999999876544 11111110 00 1111121
Q ss_pred ccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC---eEEEeCCC-C
Q 006275 497 QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST---LLVLDEPT-N 572 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~---lLlLDEPt-~ 572 (652)
......+++++++.+............+.+ ..+. .++.+++||++|||+++.+|+ +|++|||| +
T Consensus 84 --~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~-------~i~~---~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~ 151 (418)
T 2qag_C 84 --GGVQLLLTIVDTPGFGDAVDNSNCWQPVID-------YIDS---KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 151 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHHH-------HHHH---HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CC
T ss_pred --CCcccceeeeechhhhhhccchhhHHHHHH-------HHHH---HHHHHHHHHHHHHHHhccCCCeeEEEEEecCccc
Confidence 122233455555443221100000111111 1111 256677889999999999999 99999999 6
Q ss_pred CCCHHHHHHHHHHHHhcCceEEEEecCHHHH
Q 006275 573 HLDIPSKEMLEEAISEYKGTVITVSHDRYFV 603 (652)
Q Consensus 573 ~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i 603 (652)
+||+.....+. .|.. +.+||+|.|..+.+
T Consensus 152 ~L~~~d~~~lk-~L~~-~v~iIlVinK~Dll 180 (418)
T 2qag_C 152 GLKPLDIEFMK-RLHE-KVNIIPLIAKADTL 180 (418)
T ss_dssp SCCHHHHHHHH-HHTT-TSEEEEEEESTTSS
T ss_pred CCCHHHHHHHH-HHhc-cCcEEEEEEcccCc
Confidence 99988754443 3333 56788888876643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-15 Score=161.84 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=90.5
Q ss_pred eece-EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC--CCCe----eE-EEECceecccceecccccccCCCCCCHHHHH
Q 006275 440 FNRA-NLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRG----GE-VLLGEHNVLPNYFEQNQAEALDLDKTVLETV 511 (652)
Q Consensus 440 l~~i-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~--~p~~----G~-i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~ 511 (652)
|+.+ ++.|++|++++|+||||||||||++.|++.. +|++ |. |++++.+... .+.+
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~-----------------~~~i 182 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----------------PERI 182 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC-----------------HHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC-----------------HHHH
Confidence 4443 5789999999999999999999999999998 7776 57 7777654210 0011
Q ss_pred HHhhh--hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHc-------cCCCeEEEeCCCCCCCHHH----
Q 006275 512 AEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-------KPSTLLVLDEPTNHLDIPS---- 578 (652)
Q Consensus 512 ~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~-------~~p~lLlLDEPt~~LD~~~---- 578 (652)
..... ..... .+++.+.+. +. .-|.+|+|++.++++++ .+|++||+||||+++|+..
T Consensus 183 ~~i~q~~~~~~~---~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~ 252 (349)
T 1pzn_A 183 REIAQNRGLDPD---EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRG 252 (349)
T ss_dssp HHHHHTTTCCHH---HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTT
T ss_pred HHHHHHcCCCHH---HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccc
Confidence 10000 00111 222221110 11 12678899999999998 6899999999999999862
Q ss_pred --------HHHHHHHHH----hcCceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 579 --------KEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 579 --------~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
...+...|. +++.|||+++|....+...++......+|++.
T Consensus 253 ~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l 305 (349)
T 1pzn_A 253 ALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHIL 305 (349)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceE
Confidence 223333333 35679999999987665444444445555543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-14 Score=140.37 Aligned_cols=147 Identities=13% Similarity=0.052 Sum_probs=92.6
Q ss_pred eeeceEE-EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhh
Q 006275 439 LFNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517 (652)
Q Consensus 439 vl~~isl-~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~ 517 (652)
.|+.+.. .|++|++++|+||||||||||++.|++ .+..+.++++... ..+. +.+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~----------------~~~~-~~~------ 62 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG----------------GFSP-ERL------ 62 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC----------------CCCH-HHH------
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC----------------CCCH-HHH------
Confidence 3444443 588999999999999999999999999 3333333333211 0011 011
Q ss_pred ccHHHHHHHHhhCCCChh-h-hccCcCCCCHHH--HHHHHHHHHHccC-CCeEEEeCCCCCCCHHHH--------HHH--
Q 006275 518 WRIDDIKGLLGRCNFKAD-M-LDRKVSLLSGGE--KARLAFCKFMVKP-STLLVLDEPTNHLDIPSK--------EML-- 582 (652)
Q Consensus 518 ~~~~~~~~~L~~~~l~~~-~-~~~~~~~LSgGq--rqrv~LAral~~~-p~lLlLDEPt~~LD~~~~--------~~l-- 582 (652)
...+..+++..+ . .+-.+..+|+++ +++++.+++++.+ |+++|+||||+.+|.... ..+
T Consensus 63 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~ 136 (220)
T 2cvh_A 63 ------VQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQ 136 (220)
T ss_dssp ------HHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHH
T ss_pred ------HHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHH
Confidence 011111111100 0 011233455664 5678888999986 999999999999997432 222
Q ss_pred --HHHHHhcCceEEEEecCHH-------------HHHhhccEEEEEeCC
Q 006275 583 --EEAISEYKGTVITVSHDRY-------------FVKQIVNRVVEVKGS 616 (652)
Q Consensus 583 --~~~l~~~~~tvi~vsHd~~-------------~i~~~~drvi~l~~g 616 (652)
.++.++.+.|||+++|... .+..+||++++|+..
T Consensus 137 ~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 137 VLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 2233345779999999875 678899999999743
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=140.56 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=56.7
Q ss_pred CCCChHH--HHHHHHHHHHccC-CCeEEEeCCCCCCCHHH--------HHHH----HHHHccCCCeEEEEecCHH-----
Q 006275 258 ASFSSGW--QMRMSLGKILLQD-PDLLLLDEPTNHLDLDT--------IEWL----EGYLGKQDVPMVIISHDRA----- 317 (652)
Q Consensus 258 ~~LSGGq--kqRv~LAraL~~~-p~iLLLDEPts~LD~~~--------~~~l----~~~L~~~g~tvIivsHd~~----- 317 (652)
.++|+++ +++++.+++++.+ |+++|+||||+++|+.. ...+ .++.++.++|||+++|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~ 162 (220)
T 2cvh_A 83 FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTE 162 (220)
T ss_dssp ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTS
T ss_pred EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCC
Confidence 3445554 5688888999986 99999999999999732 1222 2333456899999999865
Q ss_pred --------HHHhhcCeEEEEcCC
Q 006275 318 --------FLDQLCTKIVETEMG 332 (652)
Q Consensus 318 --------~l~~~~d~ii~l~~G 332 (652)
.+.++||+|++|+..
T Consensus 163 ~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 163 MTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SCCSCCCHHHHHTSSEEEEEEEC
T ss_pred ccccCCCcceeecCcEEEEEEEe
Confidence 677899999999754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=161.41 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=71.0
Q ss_pred ccCcCCC-CHHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEE
Q 006275 538 DRKVSLL-SGGEKARLAFCKFMVKPS--TLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVE 612 (652)
Q Consensus 538 ~~~~~~L-SgGqrqrv~LAral~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~ 612 (652)
.+++..| ||||||||+|||||+.+| ++|||||||+|||+.+...+.+.|+++ +.|||+||||++.+. .|||+++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEE
Confidence 4677788 999999999999999999 999999999999999999999999866 469999999999876 5999999
Q ss_pred EeCC
Q 006275 613 VKGS 616 (652)
Q Consensus 613 l~~g 616 (652)
|.++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-15 Score=150.66 Aligned_cols=127 Identities=11% Similarity=0.143 Sum_probs=82.7
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCCC------ceEEEEeccCccCCCCCHHHHHHHhhHHH
Q 006275 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (652)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p--~~G~i~~~~~~------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~ 189 (652)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.. ..++|++|++..+..+++..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~--------- 81 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRD--------- 81 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTT---------
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcC---------
Confidence 36789999999999999999999999999986 67888775432 23677777643211000000
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHH
Q 006275 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (652)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~ 269 (652)
+.++.+.+ ...+.|-.+++
T Consensus 82 ---------------------------------------------------~f~E~~~~--------~~~~yg~~~~~-- 100 (219)
T 1s96_A 82 ---------------------------------------------------AFLEHAEV--------FGNYYGTSREA-- 100 (219)
T ss_dssp ---------------------------------------------------CEEEEEEE--------TTEEEEEEHHH--
T ss_pred ---------------------------------------------------HHHHHHHH--------HhccCCCCHHH--
Confidence 00000000 00011111222
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHh
Q 006275 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 270 LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~ 321 (652)
++.++..++++||| ||+.++..+.+.+. .+.||+++||+++.+..
T Consensus 101 -v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 101 -IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR 145 (219)
T ss_dssp -HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH
T ss_pred -HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH
Confidence 34555678999999 99999999999887 58899999999998865
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-15 Score=159.01 Aligned_cols=124 Identities=22% Similarity=0.266 Sum_probs=91.7
Q ss_pred eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCC-CcEEEECCCCc------eEEEEeccCccCCCCCHHHHHHH
Q 006275 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNM------KIAFLSQEFEVSMSRTVREEFMS 184 (652)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-~G~i~~~~~~~------~i~~v~Q~~~~~~~~Tv~e~i~~ 184 (652)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|.|...+.+. .++|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~--------------- 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR--------------- 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE---------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee---------------
Confidence 566655 7899999999999999999999999999997 89986543221 12222221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHH
Q 006275 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (652)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq 264 (652)
.+|+. +..|
T Consensus 190 ------------------------------------------------------------~~g~~-------~~~~---- 198 (372)
T 2ewv_A 190 ------------------------------------------------------------EVGED-------TKSF---- 198 (372)
T ss_dssp ------------------------------------------------------------EBTTT-------BSCS----
T ss_pred ------------------------------------------------------------ecCCC-------HHHH----
Confidence 11221 2344
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006275 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (652)
Q Consensus 265 kqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~ 330 (652)
+.+|+++|..+|++|++|||+ |+++...+.+.. ..|.+||.++|+.+ +...|||++.+.
T Consensus 199 --~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 --ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp --HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred --HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHhc
Confidence 469999999999999999999 888766555544 45889999999966 667888876553
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-15 Score=146.48 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=92.8
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc--------ceecccccccCCCCCCHHHHHHHhhhh
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------NYFEQNQAEALDLDKTVLETVAEAAED 517 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------~~~~~~~~~~~~~~~tv~e~~~~~~~~ 517 (652)
.+++|++++|+||||||||||+++|+|. |..|.|.+++.++.. .++.+... ...++.+++......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 778999998865421 22222111 134566666543211
Q ss_pred ccH----HHHHHHHhhCCCChhhh--ccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC-
Q 006275 518 WRI----DDIKGLLGRCNFKADML--DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590 (652)
Q Consensus 518 ~~~----~~~~~~L~~~~l~~~~~--~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~- 590 (652)
... ..+...+..+++ .... +.++..+|+|++|+++++|++.++|+++ +|+...+.+.+.+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWL-PAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA 149 (191)
T ss_dssp HHHTSCEEEECSCCCTTTT-HHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred HhccCCeEEEeccCcHHHH-HHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence 000 000011111222 1122 3456789999999999999999999887 68888888888776542
Q ss_pred -ceEEEEecCHHHHHhhccEE
Q 006275 591 -GTVITVSHDRYFVKQIVNRV 610 (652)
Q Consensus 591 -~tvi~vsHd~~~i~~~~drv 610 (652)
..+++.|++. .+..++++|
T Consensus 150 ~~~~~i~t~~~-~~~~~~~~i 169 (191)
T 1zp6_A 150 FEHHVLPVSGK-DTDQALQSA 169 (191)
T ss_dssp GGGGEEECTTC-CTTTTTTTT
T ss_pred ccccEEECCCC-CHHHHHHHH
Confidence 2344455432 233444444
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-16 Score=150.06 Aligned_cols=132 Identities=15% Similarity=0.076 Sum_probs=81.5
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc--------eEEEEeccCccCCCCCHHHHHHHhhHHHH
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~--------~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~ 190 (652)
.+++|++++|+||||||||||+++|+|. +..|.|.+++... .++|++|.+. +..++.+|+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~--- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG--- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH---
Confidence 5789999999999999999999999998 7789998876421 1344444322 12344444421100
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccc--cCCCCCCChHHHHHH
Q 006275 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG--DRLVASFSSGWQMRM 268 (652)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~--~~~~~~LSGGqkqRv 268 (652)
.+ ... ... ..++ .++..+++. ... +.++..+|+|++||+
T Consensus 78 -------~~---~~~-~~~------------------~~~~---------~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 -------RY---AKE-GYF------------------VILD---------GVVRPDWLP-AFTALARPLHYIVLRTTAAE 118 (191)
T ss_dssp -------HH---HHT-SCE------------------EEEC---------SCCCTTTTH-HHHTTCSCEEEEEEECCHHH
T ss_pred -------HH---hcc-CCe------------------EEEe---------ccCcHHHHH-HHHhcCCCeEEEEecCCHHH
Confidence 00 000 000 0000 001111111 111 334578999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q 006275 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK 304 (652)
Q Consensus 269 ~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~ 304 (652)
++||++..+|+++ +|+...+.+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999876 688888888877754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-17 Score=176.62 Aligned_cols=165 Identities=13% Similarity=0.069 Sum_probs=97.7
Q ss_pred eeeeeeEEEEC--CCEEEEECCCCccHHHHHHHHHcCCCCCC----cEEEECCCCceEEEEeccCccCCCCCHHHHHHHh
Q 006275 112 VLKDVTWEVKK--GEKVGLVGVNGAGKTTQLRIIAGQEEPDS----GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (652)
Q Consensus 112 vL~~vsl~i~~--Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~----G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~ 185 (652)
+.+.|+++|.+ |++++|+||||||||||+++|+|+++|++ |++.+++.... .+. ....... +++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~-----~~~-~~~~~~~-~~I~~~ 229 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGG-----DEQ-AMQYSDY-PQMALG 229 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSS-----CTT-SSCTTTH-HHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCC-----Ccc-cCChhHH-HHHHHH
Confidence 35679999999 99999999999999999999999999998 77665311000 010 0111122 333321
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHH
Q 006275 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (652)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqk 265 (652)
+... . . .. . .+.+-+..++ ....+..+..+|+|++
T Consensus 230 ~q~~-------~-~---~~----------------------~----------t~~~nl~~~~--~~~~~~~~~~~~~~~~ 264 (365)
T 1lw7_A 230 HQRY-------I-D---YA----------------------V----------RHSHKIAFID--TDFITTQAFCIQYEGK 264 (365)
T ss_dssp HHHH-------H-H---HH----------------------H----------HHCSSEEEES--SCHHHHHHHHHHHHSC
T ss_pred HHHH-------H-H---HH----------------------H----------hccCCEEEEe--CCchHHHHHHHHHcCC
Confidence 1100 0 0 00 0 0000000001 0111222345667778
Q ss_pred HHHHHHHHHc-cCCCeEEEeC---CC------CCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCeEEEE
Q 006275 266 MRMSLGKILL-QDPDLLLLDE---PT------NHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVET 329 (652)
Q Consensus 266 qRv~LAraL~-~~p~iLLLDE---Pt------s~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d~ii~l 329 (652)
|+..+++++. .+|+++|||| |+ .++|+..+..+.+.| ++.+.+||+++|. ....++|+++..+
T Consensus 265 ~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 265 AHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp CCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHH
Confidence 8888888875 6999999999 65 589998888887766 3458899999986 3444566555443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-15 Score=158.35 Aligned_cols=144 Identities=12% Similarity=0.110 Sum_probs=104.2
Q ss_pred EEEeEEEE---eCC--eeee---------eeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----
Q 006275 99 KLENISKS---YKG--VTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---- 160 (652)
Q Consensus 99 ~v~~ls~~---y~~--~~vL---------~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---- 160 (652)
++++++|+ |++ .++| +++||.|++|++++|+||||||||||+++|+|+++|++|.|.+++..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 56778887 753 2355 99999999999999999999999999999999999999999987532
Q ss_pred ----ceEEEEe-ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcH
Q 006275 161 ----MKIAFLS-QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (652)
Q Consensus 161 ----~~i~~v~-Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (652)
..++|++ |++..
T Consensus 217 ~~~~~~v~~v~~q~~~~--------------------------------------------------------------- 233 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAKE--------------------------------------------------------------- 233 (361)
T ss_dssp TTCSSEEEEECC--------------------------------------------------------------------
T ss_pred cccCCEEEEeecCcccc---------------------------------------------------------------
Confidence 1244444 32110
Q ss_pred HHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecC
Q 006275 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD 315 (652)
Q Consensus 236 ~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd 315 (652)
.++++..+|..|+.++..+|+.+++|||.. .+..+.+ +.+..-..|++.++|.
T Consensus 234 -----------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---~~~~~~l-~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 234 -----------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---GEAYDFI-NVAASGHGGSITSCHA 286 (361)
T ss_dssp ----------------------------CCHHHHHHHHTTSCCSEEEESCCCS---THHHHHH-HHHHTTCCSCEEEEEC
T ss_pred -----------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH---HHHHHHH-HHHhcCCCeEEEEECC
Confidence 013444577888889999999999999986 2333333 3333334578999999
Q ss_pred HHHHHhhcCeEEEEcCCe
Q 006275 316 RAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~ 333 (652)
.+ +...++|++.+..+.
T Consensus 287 ~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 287 GS-CELTFERLALMVLQN 303 (361)
T ss_dssp SS-HHHHHHHHHHHHTTS
T ss_pred CC-HHHHHHHHHHHHhcc
Confidence 66 668899998887664
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-15 Score=162.96 Aligned_cols=165 Identities=12% Similarity=0.134 Sum_probs=103.3
Q ss_pred eeeceEEEEEc--CeEEEEEcCCCCcHHHHHHHHhCCCCCCe----eEEEECceecccceecccccccCCCCCCHHHHHH
Q 006275 439 LFNRANLTIER--GEKTAIIGPNGCGKSTLLKLIMGLEKPRG----GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512 (652)
Q Consensus 439 vl~~isl~i~~--Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~----G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~ 512 (652)
+.+.|+++|.+ |++++|+||||||||||+++|+|+++|++ |++.+++.. .. ....+ ..... +++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~------~~-~~~~~-~~~~~-~~I~ 227 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL------GG-DEQAM-QYSDY-PQMA 227 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS------SS-CTTSS-CTTTH-HHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc------CC-CcccC-ChhHH-HHHH
Confidence 35679999999 99999999999999999999999999998 666543110 00 00000 11122 3343
Q ss_pred HhhhhccHHHHHHHHhhCCC-ChhhhccCcCCCCHHHHHHHHHHHHHc-cCCCeEEEeC---CC------CCCCHHHHHH
Q 006275 513 EAAEDWRIDDIKGLLGRCNF-KADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDE---PT------NHLDIPSKEM 581 (652)
Q Consensus 513 ~~~~~~~~~~~~~~L~~~~l-~~~~~~~~~~~LSgGqrqrv~LAral~-~~p~lLlLDE---Pt------~~LD~~~~~~ 581 (652)
........ ......+.+-+ ..+..+..+..+|+|++|+..+++++. .+|++++||| |+ .++|...+..
T Consensus 228 ~~~q~~~~-~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~ 306 (365)
T 1lw7_A 228 LGHQRYID-YAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQ 306 (365)
T ss_dssp HHHHHHHH-HHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHH
T ss_pred HHHHHHHH-HHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHH
Confidence 32211110 00111111101 012233445567788888888888875 6999999999 65 5899999999
Q ss_pred HHHHHHh----cCceEEEEecCHHHHHhhccEEEEEe
Q 006275 582 LEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVK 614 (652)
Q Consensus 582 l~~~l~~----~~~tvi~vsHd~~~i~~~~drvi~l~ 614 (652)
+.++|.+ .+.+||+++|. ....++++++..++
T Consensus 307 l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 307 FQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 9988843 35699999986 46667787776665
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-14 Score=155.44 Aligned_cols=127 Identities=14% Similarity=0.148 Sum_probs=86.9
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEECceecccceecccccccCCCCCCHHHHHHHhhh
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE 516 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~ 516 (652)
.+|++++ +++|++++|+||||||||||+++|+|+++|+ +|.|.+.+.++. +..... ..+. .
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e--~~~~~~-~~~v-------------~ 187 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE--YVFKHK-KSIV-------------N 187 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC--SCCCCS-SSEE-------------E
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh--hhhccC-ceEE-------------E
Confidence 3577765 7899999999999999999999999999998 899976554331 100000 0000 0
Q ss_pred hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEE
Q 006275 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITV 596 (652)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v 596 (652)
.. .+|+ .+..| +.+|+++|..+|++|++|||+ |.++...+.+.. ..+.+|+++
T Consensus 188 Q~----------~~g~-------~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t 240 (372)
T 2ewv_A 188 QR----------EVGE-------DTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGT 240 (372)
T ss_dssp EE----------EBTT-------TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEEC
T ss_pred ee----------ecCC-------CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEE
Confidence 00 1222 12334 469999999999999999999 777655444433 335689999
Q ss_pred ecCHHHHHhhccEE
Q 006275 597 SHDRYFVKQIVNRV 610 (652)
Q Consensus 597 sHd~~~i~~~~drv 610 (652)
+|+.+ +...+||+
T Consensus 241 ~H~~~-~~~~~~rl 253 (372)
T 2ewv_A 241 LHTNT-AIDTIHRI 253 (372)
T ss_dssp CCCCS-HHHHHHHH
T ss_pred ECcch-HHHHHHHH
Confidence 99865 55566665
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.8e-15 Score=158.90 Aligned_cols=179 Identities=15% Similarity=0.099 Sum_probs=104.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCE--EEEECCCCccHHHHHHHHHcCCCCCCcEEEEC---C-CCceEEEEeccC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---K-SNMKIAFLSQEF 170 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~---~-~~~~i~~v~Q~~ 170 (652)
.+++++ +++|++.+ |+++||+|++|++ ++|+||||||||||+++|+|+.- .|..... + ....++|++|++
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~ 91 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQES 91 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC-
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecC
Confidence 367777 89998888 9999999999999 99999999999999999999852 2221110 1 012699999998
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc-CCC
Q 006275 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL-GFT 249 (652)
Q Consensus 171 ~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l-gl~ 249 (652)
.+.+..||.||+..+.. .........+.. .+...+.+++... ++.
T Consensus 92 ~l~~~ltv~D~~~~g~~--~~~~~~~~~i~~--------------------------------~i~~q~~~~L~e~~~i~ 137 (427)
T 2qag_B 92 NVRLKLTIVSTVGFGDQ--INKEDSYKPIVE--------------------------------FIDAQFEAYLQEELKIR 137 (427)
T ss_dssp -CEEEEEEEEEECCCC---CCHHHHSHHHHH--------------------------------HHHHHHHHHHHHC--CC
T ss_pred ccccccchhhhhhhhhc--cccchhhhHHHH--------------------------------HHHHHHHHHHHHHHhhh
Confidence 77667788887632110 000000000000 0111122222221 211
Q ss_pred c---ccccCC-----------CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH----HccCCCeEEE
Q 006275 250 A---DDGDRL-----------VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVI 311 (652)
Q Consensus 250 ~---~~~~~~-----------~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~----L~~~g~tvIi 311 (652)
. ...+.. ...|+-.. +.++++|..+++|+++|+|+..|.+.....+.+. |+..|++|+.
T Consensus 138 r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~ 214 (427)
T 2qag_B 138 RVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQ 214 (427)
T ss_dssp CCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCC
T ss_pred hhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEe
Confidence 0 001111 12455555 7999999999999999999999998877666543 5567999999
Q ss_pred EecCH
Q 006275 312 ISHDR 316 (652)
Q Consensus 312 vsHd~ 316 (652)
+|.|-
T Consensus 215 is~~d 219 (427)
T 2qag_B 215 FPTDD 219 (427)
T ss_dssp CC---
T ss_pred cCCCc
Confidence 98763
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-15 Score=144.23 Aligned_cols=82 Identities=22% Similarity=0.089 Sum_probs=70.3
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCce-----EEEEeccCccCC
Q 006275 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-----IAFLSQEFEVSM 174 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~-----i~~v~Q~~~~~~ 174 (652)
.+++++.|+++.+++++||+|++|++++|+||||||||||+++|+|++ |++|+|.++|.... -.|++|++.++
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~- 87 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY- 87 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT-
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc-
Confidence 346778887778999999999999999999999999999999999999 99999998875431 12689998776
Q ss_pred CCCHHHHHH
Q 006275 175 SRTVREEFM 183 (652)
Q Consensus 175 ~~Tv~e~i~ 183 (652)
.+|+.||+.
T Consensus 88 ~ltv~e~l~ 96 (158)
T 1htw_A 88 RLADPEELE 96 (158)
T ss_dssp TCSCTTHHH
T ss_pred cCCcHHHHH
Confidence 889999874
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-17 Score=155.87 Aligned_cols=164 Identities=14% Similarity=0.143 Sum_probs=100.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc----ceecccccccCCCCCCHHHHHHHhhhhccHHHHHH
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 525 (652)
|++++|+||||||||||+++|++ |.+|.+.+++.++.. +++.+.. ......++++++..............
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 76 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWE--SDELLALTWKNITDLTVNFLLAQNDV 76 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGG--CHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCcc--chhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 78999999999999999999997 667889998765421 2222211 11112345555543221100000000
Q ss_pred HHhhCCCChhhhccCcCCC--CHHHHHHHHHHH------HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEE
Q 006275 526 LLGRCNFKADMLDRKVSLL--SGGEKARLAFCK------FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVI 594 (652)
Q Consensus 526 ~L~~~~l~~~~~~~~~~~L--SgGqrqrv~LAr------al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi 594 (652)
+++.+. ... ..+.+..+ |+|++|++.++. +++.+|....+|+ +||+..... .+.+..+ +.++|
T Consensus 77 ild~~~-~~~-~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii 150 (189)
T 2bdt_A 77 VLDYIA-FPD-EAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFY 150 (189)
T ss_dssp EEESCC-CHH-HHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEE
T ss_pred EEeecc-CHH-HHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEE
Confidence 111111 111 11222335 889988888888 8888888888884 899988877 7777654 35899
Q ss_pred EEecC-HHHHHhhccEEEEEeCCEEEeecCChhh
Q 006275 595 TVSHD-RYFVKQIVNRVVEVKGSNLQDYAGDYNV 627 (652)
Q Consensus 595 ~vsHd-~~~i~~~~drvi~l~~g~i~~~~g~~~~ 627 (652)
.+||. ++.++++||+|+ ++|++. ..|+++.
T Consensus 151 ~tsh~~~~~~e~~~~~i~--~~g~~~-~~~~~~~ 181 (189)
T 2bdt_A 151 NTSHLQPTNLNDIVKNLK--TNPRFI-FCMAGDP 181 (189)
T ss_dssp ECSSSCGGGHHHHHHHHH--HCGGGS-CC-----
T ss_pred eCCCCChhhHHHHHHHHh--hCCcEE-EeecCCc
Confidence 99999 999999999999 999986 4566543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-16 Score=154.39 Aligned_cols=163 Identities=12% Similarity=0.045 Sum_probs=97.7
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHH
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~ 198 (652)
|++++|+||||||||||+++|++ |.+|.+.+++.. ..+++++|........++++++..... .
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~ 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTV----------N 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHH----------H
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHH----------H
Confidence 67999999999999999999997 668888887532 134555554322122244444321100 0
Q ss_pred HHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCC--ChHHHHHHHHHH----
Q 006275 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF--SSGWQMRMSLGK---- 272 (652)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~L--SGGqkqRv~LAr---- 272 (652)
.... .. ..+++.+.. ....+....+ |+|++|++.++.
T Consensus 69 ---~~~~-~~-------------------------------~~ild~~~~--~~~~~~~~~~~~s~g~~~~~~~i~L~~~ 111 (189)
T 2bdt_A 69 ---FLLA-QN-------------------------------DVVLDYIAF--PDEAEALAQTVQAKVDDVEIRFIILWTN 111 (189)
T ss_dssp ---HHHT-TC-------------------------------EEEEESCCC--HHHHHHHHHHHHHHCSSEEEEEEEEECC
T ss_pred ---HHhc-CC-------------------------------cEEEeeccC--HHHHHHHHHHHHhcccCCCeEEEEEeCC
Confidence 0000 00 001111100 0000112234 889988988888
Q ss_pred --HHccCCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecC-HHHHHhhcCeEEEEcCCeEEEecCChH
Q 006275 273 --ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHD-RAFLDQLCTKIVETEMGVSRTYEGNYS 342 (652)
Q Consensus 273 --aL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd-~~~l~~~~d~ii~l~~G~~~~~~g~~~ 342 (652)
+++.+|....+|+ +||+..+.. .+.+ .+.+.++|.+||. ++.+.++||+|+ ++|++ .+.|+.+
T Consensus 112 ~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~-~~~~~~~ 180 (189)
T 2bdt_A 112 REELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRF-IFCMAGD 180 (189)
T ss_dssp HHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGG-SCC----
T ss_pred HHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcE-EEeecCC
Confidence 8999999888884 899987766 5544 3457899999999 999999999998 88887 4566543
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-12 Score=129.51 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=79.9
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhC--CCCC-----CeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhc
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMG--LEKP-----RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g--~~~p-----~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~ 518 (652)
-|++|++++|+||||||||||++.|++ ..+| ..|.+++++...... . .+.+.. ... ..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~---~----------~~~~~~-~~~-g~ 84 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP---E----------RLLAVA-ERY-GL 84 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH---H----------HHHHHH-HHT-TC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCH---H----------HHHHHH-HHc-CC
Confidence 489999999999999999999999999 5655 567777765431000 0 000000 000 00
Q ss_pred cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHH-HHHHHHHc--cCCCeEEEeCCCCCCCHH-------H-----HHHHH
Q 006275 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR-LAFCKFMV--KPSTLLVLDEPTNHLDIP-------S-----KEMLE 583 (652)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqr-v~LAral~--~~p~lLlLDEPt~~LD~~-------~-----~~~l~ 583 (652)
..+ ++++.+. ....++..+... +.-+..++ .+|+++++|||++.+|.. + ...+.
T Consensus 85 ~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~ 153 (243)
T 1n0w_A 85 SGS---DVLDNVA--------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFL 153 (243)
T ss_dssp CHH---HHHHTEE--------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHH
T ss_pred CHH---HHhhCeE--------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHH
Confidence 111 1112111 111245554433 22233333 589999999999999975 3 12222
Q ss_pred HHH----HhcCceEEEEecCHHHHHh-------------------hccEEEEEeCC
Q 006275 584 EAI----SEYKGTVITVSHDRYFVKQ-------------------IVNRVVEVKGS 616 (652)
Q Consensus 584 ~~l----~~~~~tvi~vsHd~~~i~~-------------------~~drvi~l~~g 616 (652)
..| ++.+.|||+++|....... +||++++|+.+
T Consensus 154 ~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 154 RMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 222 2346799999997665443 79999999854
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-13 Score=146.86 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=82.3
Q ss_pred eeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEEC-CC------CceEEEEeccCccCCCCCHHHHHHH
Q 006275 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKA-KS------NMKIAFLSQEFEVSMSRTVREEFMS 184 (652)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-p~~G~i~~~-~~------~~~i~~v~Q~~~~~~~~Tv~e~i~~ 184 (652)
++++++. .+|++++|+||||||||||+++|+|..+ |.+|+|.+. |. ...+++++|++.++...+++++.+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l~ 284 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLW 284 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhhc
Confidence 4555553 4799999999999999999999999999 999999875 42 2468999999877666677664210
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHH
Q 006275 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (652)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq 264 (652)
. +...++...+.++++.+|+. ...++.+.+|| ||
T Consensus 285 ~--------------------------------------------l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~ 318 (358)
T 2rcn_A 285 H--------------------------------------------LEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GC 318 (358)
T ss_dssp C--------------------------------------------CCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TC
T ss_pred C--------------------------------------------CCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HH
Confidence 0 11112234455778888886 56788999999 99
Q ss_pred HHHHHHHHHH
Q 006275 265 QMRMSLGKIL 274 (652)
Q Consensus 265 kqRv~LAraL 274 (652)
+||++||+++
T Consensus 319 ~~r~ala~gl 328 (358)
T 2rcn_A 319 AIREAVENGA 328 (358)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 9999999875
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.3e-13 Score=141.87 Aligned_cols=75 Identities=28% Similarity=0.470 Sum_probs=67.7
Q ss_pred cCcCCCCHHHHHHH------HHHHHHccC-CCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccE
Q 006275 539 RKVSLLSGGEKARL------AFCKFMVKP-STLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNR 609 (652)
Q Consensus 539 ~~~~~LSgGqrqrv------~LAral~~~-p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~dr 609 (652)
+++..||||||||+ ++|++++.+ |++|||||||++||+..+..+.+.|.+.. .+||+|||+.+ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56778999999988 567899999 99999999999999999999999998764 49999999987 5788999
Q ss_pred EEEEe
Q 006275 610 VVEVK 614 (652)
Q Consensus 610 vi~l~ 614 (652)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.7e-14 Score=138.89 Aligned_cols=127 Identities=13% Similarity=0.262 Sum_probs=79.1
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEECceeccc------ceecccccccCCCCCCHHHHHHHhhh
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVLP------NYFEQNQAEALDLDKTVLETVAEAAE 516 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~~------~~~~~~~~~~~~~~~tv~e~~~~~~~ 516 (652)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... .|++|... ..+.+... .
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~--------~f~~~~~~-~ 81 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD--------EFKEMISR-D 81 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH--------HHHHHHHT-T
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH--------HHHHHHhc-C
Confidence 46789999999999999999999999999986 78888877654322 12222110 01110000 0
Q ss_pred hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEE
Q 006275 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITV 596 (652)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v 596 (652)
+.++...+ ...+.|-.++. +..++..++++||| ||+.+...+.+.+. .+.||+++
T Consensus 82 --------~f~E~~~~--------~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~ 136 (219)
T 1s96_A 82 --------AFLEHAEV--------FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFIL 136 (219)
T ss_dssp --------CEEEEEEE--------TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEE
T ss_pred --------HHHHHHHH--------HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEE
Confidence 00000000 00111111222 34556678999999 99999999999887 35699999
Q ss_pred ecCHHHHHh
Q 006275 597 SHDRYFVKQ 605 (652)
Q Consensus 597 sHd~~~i~~ 605 (652)
||+++.+..
T Consensus 137 th~~~~l~~ 145 (219)
T 1s96_A 137 PPSKIELDR 145 (219)
T ss_dssp CSSHHHHHH
T ss_pred CCCHHHHHH
Confidence 999998876
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-14 Score=144.89 Aligned_cols=133 Identities=21% Similarity=0.320 Sum_probs=92.1
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHh---CCCCCCeeEEEECceeccc------ceecccccccCCCCCCHHHHHHHhhh---
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVLLGEHNVLP------NYFEQNQAEALDLDKTVLETVAEAAE--- 516 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~---g~~~p~~G~i~~~g~~~~~------~~~~~~~~~~~~~~~tv~e~~~~~~~--- 516 (652)
++++++|+||||||||||+++|+ |+..|+.|.|.+++.+... ..+.+ ...+.+..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIE--KSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 9999999998776543210 11112 1234455677777765211
Q ss_pred -------h--ccHHHHHHHHh--hCCC-----------ChhhhccCcCCCCHHHHHHHHHHHHH-ccCCCeEEEe----C
Q 006275 517 -------D--WRIDDIKGLLG--RCNF-----------KADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLD----E 569 (652)
Q Consensus 517 -------~--~~~~~~~~~L~--~~~l-----------~~~~~~~~~~~LSgGqrqrv~LAral-~~~p~lLlLD----E 569 (652)
. ....++..+.. .+++ .....++.+..||| |+ +|+ +.+|++++|| |
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 0 11222333321 2220 02345778889999 65 778 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 006275 570 PTNHLDIPSKEMLEEAISEYK 590 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~~ 590 (652)
||++||..+...+.+.+.++.
T Consensus 177 P~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHH
Confidence 999999999999999888763
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-12 Score=127.88 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=28.3
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHc--CCCC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEP 149 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G--~~~p 149 (652)
-|++|++++|+||||||||||++.|++ ..+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 489999999999999999999999999 5655
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.36 E-value=6.9e-15 Score=138.93 Aligned_cols=83 Identities=14% Similarity=0.036 Sum_probs=67.6
Q ss_pred EEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-----ceecccccccC
Q 006275 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQNQAEAL 501 (652)
Q Consensus 427 ~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-----~~~~~~~~~~~ 501 (652)
.+++++.|+++.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.. .+..|+ ..+
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~--~~l 86 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYH--FDL 86 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEE--EEC
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceec--ccc
Confidence 346778888788999999999999999999999999999999999999 999999998876532 123333 344
Q ss_pred CCCCCHHHHHHH
Q 006275 502 DLDKTVLETVAE 513 (652)
Q Consensus 502 ~~~~tv~e~~~~ 513 (652)
+ .+|+.+++..
T Consensus 87 ~-~ltv~e~l~~ 97 (158)
T 1htw_A 87 Y-RLADPEELEF 97 (158)
T ss_dssp T-TCSCTTHHHH
T ss_pred c-cCCcHHHHHH
Confidence 4 7888888754
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.35 E-value=4e-14 Score=151.59 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=101.7
Q ss_pred EEEeeeeE---eCC--eeee---------eceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccc
Q 006275 426 TIKNLEFG---YED--RLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (652)
Q Consensus 426 ~~~~v~~~---y~~--~~vl---------~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~ 491 (652)
++++++|+ |++ ..+| +++||+|++|++++|+||||||||||+++|+|+++|++|.|.++|..-. .
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~-~ 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL-F 215 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC-C
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc-C
Confidence 67788888 753 3455 9999999999999999999999999999999999999999999874210 0
Q ss_pred eec-ccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 492 YFE-QNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 492 ~~~-~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
.. ......+.+ .. .....++++..++-.|+.++..+|+.+++|||
T Consensus 216 -~~~~~~~v~~v~---------------~q------------------~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~ 261 (361)
T 2gza_A 216 -LPDHPNHVHLFY---------------PS------------------EAKEEENAPVTAATLLRSCLRMKPTRILLAEL 261 (361)
T ss_dssp -CTTCSSEEEEEC---------------C----------------------------CCHHHHHHHHTTSCCSEEEESCC
T ss_pred -ccccCCEEEEee---------------cC------------------ccccccccccCHHHHHHHHHhcCCCEEEEcCc
Confidence 00 000000000 00 00001245556888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCE
Q 006275 571 TNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSN 617 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~ 617 (652)
.. .+... +.+.+..-..|++.++|..+ +...++|+..+..+.
T Consensus 262 r~---~~~~~-~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 262 RG---GEAYD-FINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp CS---THHHH-HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred hH---HHHHH-HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 86 22222 22223222247899999965 667788888886653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.9e-14 Score=146.62 Aligned_cols=155 Identities=15% Similarity=0.217 Sum_probs=100.6
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------ceEEEEeccCccCCCCCHHHHHH
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSRTVREEFM 183 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------------~~i~~v~Q~~~~~~~~Tv~e~i~ 183 (652)
.++|++++|+||||||||||+++|+|+++|++|+|.+.+.+ ..+.|++|.....+..++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999987533 13668999887777778888874
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChH
Q 006275 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (652)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGG 263 (652)
.+... . .+. -+++..|.. ......+.+||
T Consensus 206 ~~~~~----------------~------------------------~d~--------vliDtaG~~-~~~~~l~~eL~-- 234 (328)
T 3e70_C 206 HAKAR----------------G------------------------IDV--------VLIDTAGRS-ETNRNLMDEMK-- 234 (328)
T ss_dssp HHHHH----------------T------------------------CSE--------EEEEECCSC-CTTTCHHHHHH--
T ss_pred HHHhc----------------c------------------------chh--------hHHhhccch-hHHHHHHHHHH--
Confidence 22100 0 000 012233332 11122223333
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHH---------HHHhhcCeEEEEcCCe
Q 006275 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA---------FLDQLCTKIVETEMGV 333 (652)
Q Consensus 264 qkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~---------~l~~~~d~ii~l~~G~ 333 (652)
.++|++..++++++||.++ +.|. .+.+..+-+..+.|+|++||.-+ .+....-.|..+..|.
T Consensus 235 -----~i~ral~~de~llvLDa~t-~~~~--~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge 305 (328)
T 3e70_C 235 -----KIARVTKPNLVIFVGDALA-GNAI--VEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQ 305 (328)
T ss_dssp -----HHHHHHCCSEEEEEEEGGG-TTHH--HHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSS
T ss_pred -----HHHHHhcCCCCEEEEecHH-HHHH--HHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCC
Confidence 4899999999999999555 4433 23333333456899999999532 2223344566666664
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-14 Score=154.70 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=97.6
Q ss_pred eeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------ceEEEEeccCccCCCC
Q 006275 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSR 176 (652)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------------~~i~~v~Q~~~~~~~~ 176 (652)
-+++||++++|++++|+|+||||||||+++|+|++++++|+|.+.+.+ ..|+|++|.+...+..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999999999999986421 1489999987666666
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
++++|+..+.. .. .|. -+++-.|..... ...
T Consensus 363 tV~e~l~~a~~----------------~~----~Dv----------------------------VLIDTaGrl~~~-~~l 393 (503)
T 2yhs_A 363 VIFDAIQAAKA----------------RN----IDV----------------------------LIADTAGRLQNK-SHL 393 (503)
T ss_dssp HHHHHHHHHHH----------------TT----CSE----------------------------EEECCCCSCCCH-HHH
T ss_pred HHHHHHHHHHh----------------cC----CCE----------------------------EEEeCCCccchh-hhH
Confidence 78887742210 00 000 012222322110 111
Q ss_pred CCCCChHHHHHHHHHHHHc-cCCC-eEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEec
Q 006275 257 VASFSSGWQMRMSLGKILL-QDPD-LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~-~~p~-iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsH 314 (652)
+. -.+|++.+++++. ..|+ +||..+|++|.|... .+..+-+..+.|.|++||
T Consensus 394 m~----EL~kiv~iar~l~~~~P~evLLvLDattGq~al~--~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 394 ME----ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS--QAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HH----HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--HHHHHHHHTCCSEEEEEC
T ss_pred HH----HHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH--HHHHHHhhcCCCEEEEEc
Confidence 12 2347888898774 4564 565666999866543 233333346889999999
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-14 Score=147.19 Aligned_cols=143 Identities=20% Similarity=0.190 Sum_probs=86.0
Q ss_pred CCCEEEEECCCCccHHHHHHHHH---cCCCCCCcEEEECCCC------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHH
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEI 192 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~---G~~~p~~G~i~~~~~~------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~ 192 (652)
++++++|+||||||||||+++|+ |+..|+.|+|.+.+.. ..+++++|+..+.+..++.+++...+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~---- 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN---- 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----
Confidence 47899999999999999999999 9999999988765421 1233344554444444566555321100
Q ss_pred HHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh--hhcCC-----------CcccccCCCCC
Q 006275 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM--PELGF-----------TADDGDRLVAS 259 (652)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll--~~lgl-----------~~~~~~~~~~~ 259 (652)
......- +. .... .. ..+..+. ..+++ .....++.+..
T Consensus 102 ----------~~~~~~i---l~--------------g~~~-~~-~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 ----------RRGQHWL---LD--------------GFPR-TL-GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp ----------CTTSCEE---EE--------------SCCC-SH-HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred ----------cCCCeEE---EE--------------CCCC-CH-HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 0000000 00 0000 00 0011110 11110 01234567789
Q ss_pred CChHHHHHHHHHHHH-ccCCCeEEEe----CCCCCCCHHHHHHHHHHHcc
Q 006275 260 FSSGWQMRMSLGKIL-LQDPDLLLLD----EPTNHLDLDTIEWLEGYLGK 304 (652)
Q Consensus 260 LSGGqkqRv~LAraL-~~~p~iLLLD----EPts~LD~~~~~~l~~~L~~ 304 (652)
||| |+ +|+ +.+|++++|| |||++||+.+.+.+.+.|++
T Consensus 153 lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 153 PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 999 66 778 9999999999 99999999998888776643
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-13 Score=146.40 Aligned_cols=146 Identities=23% Similarity=0.263 Sum_probs=90.5
Q ss_pred eeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----------CCCcEEEECCCCceEEEEeccCccCCCCCHHHH
Q 006275 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----------PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE 181 (652)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----------p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~ 181 (652)
-++++|+++.|+.++|||+||||||||+++|+|..+ |..|.|.+++ ... -.+.+.|.+... ..++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~-~~l~DtpGli~~--a~~~ 222 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EER-FTLADIPGIIEG--ASEG 222 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCE-EEEEECCCCCCC--GGGS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cce-EEEEeccccccc--hhhh
Confidence 478999999999999999999999999999999843 3334443331 011 122233322111 0000
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCC
Q 006275 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261 (652)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LS 261 (652)
. .+... ++ +. .++++.++..+++. +.++.+||
T Consensus 223 ~--~L~~~--------------------------fl-------~~---------~era~~lL~vvDls----~~~~~~ls 254 (416)
T 1udx_A 223 K--GLGLE--------------------------FL-------RH---------IARTRVLLYVLDAA----DEPLKTLE 254 (416)
T ss_dssp C--CSCHH--------------------------HH-------HH---------HTSSSEEEEEEETT----SCHHHHHH
T ss_pred h--hhhHH--------------------------HH-------HH---------HHHHHhhhEEeCCc----cCCHHHHH
Confidence 0 00000 00 00 00112344445542 45678899
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHH---HHHHHHccCCCeEEEEec
Q 006275 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE---WLEGYLGKQDVPMVIISH 314 (652)
Q Consensus 262 GGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~---~l~~~L~~~g~tvIivsH 314 (652)
+||+|++++|++|+..|.+|+| |.+|+.... .+.+.+++.+.++|+||.
T Consensus 255 ~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 255 TLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 9999999999999999999999 999986543 233445556777777663
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-13 Score=141.35 Aligned_cols=156 Identities=13% Similarity=0.058 Sum_probs=98.6
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc--------------c--eecccccccCCCCCCHHHH
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------------N--YFEQNQAEALDLDKTVLET 510 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------------~--~~~~~~~~~~~~~~tv~e~ 510 (652)
.++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.. + ++.| ...+++..+++++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q--~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKH--SYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECC--CTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEec--cccCCHHHHHHHH
Confidence 36899999999999999999999999999999999998877521 1 2222 2334556678888
Q ss_pred HHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 006275 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590 (652)
Q Consensus 511 ~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~ 590 (652)
+..+...... .-+++..|.. ...... ..+.-.++|++..++.+++||.+|. .|. ...+..+-+..+
T Consensus 204 l~~~~~~~~d---~vliDtaG~~-~~~~~l-------~~eL~~i~ral~~de~llvLDa~t~-~~~--~~~~~~~~~~~~ 269 (328)
T 3e70_C 204 IQHAKARGID---VVLIDTAGRS-ETNRNL-------MDEMKKIARVTKPNLVIFVGDALAG-NAI--VEQARQFNEAVK 269 (328)
T ss_dssp HHHHHHHTCS---EEEEEECCSC-CTTTCH-------HHHHHHHHHHHCCSEEEEEEEGGGT-THH--HHHHHHHHHHSC
T ss_pred HHHHHhccch---hhHHhhccch-hHHHHH-------HHHHHHHHHHhcCCCCEEEEecHHH-HHH--HHHHHHHHHhcC
Confidence 7654321000 0012223321 111222 2333358999999999999996665 322 222333333457
Q ss_pred ceEEEEecCHH---------HHHhhccEEEEEeCCEE
Q 006275 591 GTVITVSHDRY---------FVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 591 ~tvi~vsHd~~---------~i~~~~drvi~l~~g~i 618 (652)
.|+|++||.-. .+....-.|.++..|+.
T Consensus 270 it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 270 IDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp CCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 79999999532 33344457777877754
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-13 Score=148.98 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=94.7
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeE--EEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEC---ceec-ccceeccccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG---EHNV-LPNYFEQNQA 498 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~--~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~---g~~~-~~~~~~~~~~ 498 (652)
+++++ ++.|++.+ |+++||+|++|++ ++|+||||||||||+++|+|+.- .|.-... +... ..++..|.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~-- 90 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE-- 90 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec--
Confidence 66667 88998877 9999999999999 99999999999999999999841 1211000 0000 01222222
Q ss_pred ccCCCCCCHHHHHHHhhh-----hc------cHHHHHHHHhhC-CCCh---hhhccC----c-------CCCCHHHHHHH
Q 006275 499 EALDLDKTVLETVAEAAE-----DW------RIDDIKGLLGRC-NFKA---DMLDRK----V-------SLLSGGEKARL 552 (652)
Q Consensus 499 ~~~~~~~tv~e~~~~~~~-----~~------~~~~~~~~L~~~-~l~~---~~~~~~----~-------~~LSgGqrqrv 552 (652)
..+.+.+|+.+++.++.. .| -...+..+|... ++.. ...+.. + ..|+..+ +
T Consensus 91 ~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---i 167 (427)
T 2qag_B 91 SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---L 167 (427)
T ss_dssp --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---H
T ss_pred CccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---H
Confidence 111122233333222110 01 112334445443 3321 011222 1 2456555 7
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh-c---CceEEEEecCH
Q 006275 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE-Y---KGTVITVSHDR 600 (652)
Q Consensus 553 ~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-~---~~tvi~vsHd~ 600 (652)
.++++|..+++|+++|||+..|.+.....+.+.|++ + +.+|+.+|.|-
T Consensus 168 eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 168 VTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 899999999999999999999999888877777764 3 45888888753
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.9e-15 Score=158.69 Aligned_cols=136 Identities=15% Similarity=0.089 Sum_probs=95.8
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-------------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------------- 490 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~------------- 490 (652)
.++++++.+.|+...+|+++ +. .+|++++|+|||||||||||++|+|+++|.+|.|.+.+.++..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 35677788777766788888 54 8999999999999999999999999999999999887765411
Q ss_pred -ce---------ecccccccCCCC----CCHHHHHHHhhh---------hccHHHHHHHHhhCCCChhhhccCcCCCCHH
Q 006275 491 -NY---------FEQNQAEALDLD----KTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (652)
Q Consensus 491 -~~---------~~~~~~~~~~~~----~tv~e~~~~~~~---------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG 547 (652)
++ ++|+++..+... .|+.+++..+.. ......+...|..+++... ..+.+||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHHH
Confidence 01 112221111111 467777765421 0111234445777787532 366789999
Q ss_pred HHHHHHHHHHHccCCCeEE
Q 006275 548 EKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 548 qrqrv~LAral~~~p~lLl 566 (652)
|+|| |||+++.+|++..
T Consensus 298 ~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEE--EEEEECTTTCEEE
T ss_pred HHHH--hhhhhcCCCCccC
Confidence 9999 9999999999976
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-14 Score=153.42 Aligned_cols=144 Identities=17% Similarity=0.214 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC--------CCCeeEEEECceecccc-------------------------eecc-c
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLE--------KPRGGEVLLGEHNVLPN-------------------------YFEQ-N 496 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~--------~p~~G~i~~~g~~~~~~-------------------------~~~~-~ 496 (652)
++++|+|+||||||||++.|.|+. .|+.|+|.++|.++... ++.. .
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 78999999998765211 0100 0
Q ss_pred ccccCCCCCCHHHHHHHhhhhc------cHHH------HHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 497 QAEALDLDKTVLETVAEAAEDW------RIDD------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~~------~~~~------~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+...+.++.++.|+...+.... .... +...+..++.. ...++. .+||+||+||+..+++++.+|++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~-~~~~~~-~~ls~g~~Q~~~ad~ill~k~dl 162 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAV-HADEQM-NQFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETT-THHHHH-HHCHHHHHHHHTCSEEEEECTTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHH-HHHHHH-hhchHHHHHHHhCCEEEEECccc
Confidence 1111222333333322110000 0000 01122233332 222222 27999999999999999999998
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhc
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIV 607 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~ 607 (652)
+ ||| ..+.+.|++. +.+|+++||+...+..+.
T Consensus 163 ~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~ 196 (318)
T 1nij_A 163 A--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLLF 196 (318)
T ss_dssp C--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGGS
T ss_pred C--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHHh
Confidence 7 999 5666666654 359999999754444443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-13 Score=131.51 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=72.0
Q ss_pred EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHH
Q 006275 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (652)
Q Consensus 444 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~ 523 (652)
+|++.+|+.++|+||||+|||||+++|++.+.|.+|... .++ +..+.+. .+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~--------~~~------------~~~~~~~---------~~ 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG--------YFF------------DTKDLIF---------RL 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC--------CEE------------EHHHHHH---------HH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE--------EEE------------EHHHHHH---------HH
Confidence 456678999999999999999999999999876655210 011 1111110 01
Q ss_pred HHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHHHhc---CceEEEEecC
Q 006275 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN-HLDIPSKEMLEEAISEY---KGTVITVSHD 599 (652)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~~~---~~tvi~vsHd 599 (652)
......-. .. -+...+.+|++|+||||++ ++|+..+..+.+++... +.++|++||.
T Consensus 83 ~~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 83 KHLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11111100 00 0112244899999999985 99999999999988753 5699999997
Q ss_pred HH
Q 006275 600 RY 601 (652)
Q Consensus 600 ~~ 601 (652)
..
T Consensus 143 ~~ 144 (180)
T 3ec2_A 143 SL 144 (180)
T ss_dssp CS
T ss_pred Ch
Confidence 64
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-15 Score=157.77 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=67.4
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC--------------Cce
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS--------------NMK 162 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~--------------~~~ 162 (652)
.|+++++++.|+...+++++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+. ..+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 367788899997778999999999999999999999999999999999999999999987542 124
Q ss_pred EEEEeccCccCC
Q 006275 163 IAFLSQEFEVSM 174 (652)
Q Consensus 163 i~~v~Q~~~~~~ 174 (652)
++|++|++.++.
T Consensus 109 i~~v~q~~~~~~ 120 (337)
T 2qm8_A 109 MARLAIDRNAFI 120 (337)
T ss_dssp STTGGGCTTEEE
T ss_pred heeeccCccccc
Confidence 788999876654
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-14 Score=153.45 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=40.7
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhh
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~ 322 (652)
.+||+||+||+..+++++.+|+++ ||| ..-.+.|.+ ++ .+.||+++||+...+..+
T Consensus 140 ~~ls~g~~Q~~~ad~ill~k~dl~--de~-----~~l~~~l~~-l~-~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 140 NQFTIAQSQVGYADRILLTKTDVA--GEA-----EKLHERLAR-IN-ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HHCHHHHHHHHTCSEEEEECTTTC--SCT-----HHHHHHHHH-HC-SSSCEEECCSSCCCGGGG
T ss_pred hhchHHHHHHHhCCEEEEECcccC--CHH-----HHHHHHHHH-hC-CCCeEEEecccCCCHHHH
Confidence 379999999999999999999987 999 222222322 33 478999999975544433
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-14 Score=159.67 Aligned_cols=184 Identities=14% Similarity=0.050 Sum_probs=108.2
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------ceEEEEeccCccCCCCCHHHHHH
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFM 183 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------~~i~~v~Q~~~~~~~~Tv~e~i~ 183 (652)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.+.. ..+++..|........|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46788999999999999999999999999999999999999999987643 23566666543212346666654
Q ss_pred HhhHH--------HHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh-hcCCCccc--
Q 006275 184 SAFKE--------EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADD-- 252 (652)
Q Consensus 184 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~-~lgl~~~~-- 252 (652)
.++.. +.........+....... .. ...+.+......+..+.. .+++....
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh-~~-----------------~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~ 389 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGH-AS-----------------YSTLHAGDINQMVYRLESEPLKVPRSMLQ 389 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTC-EE-----------------EEEEECSSHHHHHHHHHSTTTCCCGGGGG
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCC-Cc-----------------ccccccCCHHHHHHHHHhcccccHHHHHh
Confidence 33221 000000000000000000 00 000011112222222211 12332111
Q ss_pred -cc---CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEE--EecCHHHHHhhc
Q 006275 253 -GD---RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVI--ISHDRAFLDQLC 323 (652)
Q Consensus 253 -~~---~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIi--vsHd~~~l~~~~ 323 (652)
.+ .....+||||+||+++|. + | |+|||+.....+.+.+ .+.+.|+|+ +||+++.+...|
T Consensus 390 ~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~ 457 (511)
T 2oap_1 390 FLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFL 457 (511)
T ss_dssp GCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHH
T ss_pred hccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHc
Confidence 11 223568999999987751 2 7 9999998776655544 345788885 899999998877
Q ss_pred C
Q 006275 324 T 324 (652)
Q Consensus 324 d 324 (652)
+
T Consensus 458 g 458 (511)
T 2oap_1 458 G 458 (511)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.9e-14 Score=148.80 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=58.5
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
|+++++++.|+...+++++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.+.++
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 93 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence 5667888889777899999999999999999999999999999999999999999999887654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-14 Score=161.00 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=100.5
Q ss_pred eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee-ccc---c---eec---------------
Q 006275 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-VLP---N---YFE--------------- 494 (652)
Q Consensus 437 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-~~~---~---~~~--------------- 494 (652)
..+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|++.|.+ +.. . ...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 357889999999999999999999999999999999999999999998754 210 0 011
Q ss_pred -----ccccccCCCCCCHHHHHHHh--h--hhc-----cHHHHHHHHhhC-----CCChhh---hc---cCcCCCCHHHH
Q 006275 495 -----QNQAEALDLDKTVLETVAEA--A--EDW-----RIDDIKGLLGRC-----NFKADM---LD---RKVSLLSGGEK 549 (652)
Q Consensus 495 -----~~~~~~~~~~~tv~e~~~~~--~--~~~-----~~~~~~~~L~~~-----~l~~~~---~~---~~~~~LSgGqr 549 (652)
|+++..+....+..|.+... . ... ....+.+++.++ ++...+ .+ .....+|+||+
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 11110111123333322111 0 000 001122333332 222111 11 23346899999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEE--EecCHHHHHhhccE
Q 006275 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVIT--VSHDRYFVKQIVNR 609 (652)
Q Consensus 550 qrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~--vsHd~~~i~~~~dr 609 (652)
||+++|. + | |+|||+.+.+.+.+.|.++ +.|+++ +||+++.+...|+.
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 9987652 1 7 9999998877766666554 358875 89999999988753
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-12 Score=117.48 Aligned_cols=89 Identities=17% Similarity=0.248 Sum_probs=65.5
Q ss_pred eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEECceecccceecccccccCCCCCCHHHHHHHhhh
Q 006275 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE 516 (652)
Q Consensus 439 vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~ 516 (652)
+++++ +|+.++|+||||||||||+++|++...+ +| .+.+++.++ ...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~-------------~~~------------ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM-------------PLT------------ 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS-------------CCC------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh-------------hHH------------
Confidence 45665 8999999999999999999999999876 35 333332111 000
Q ss_pred hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---Cce-
Q 006275 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGT- 592 (652)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~t- 592 (652)
+++.+|++|+||||++ +|...++.+.++++.. +.+
T Consensus 79 ----------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~ 117 (149)
T 2kjq_A 79 ----------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGF 117 (149)
T ss_dssp ----------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCE
T ss_pred ----------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcE
Confidence 2356899999999998 6665588888887643 467
Q ss_pred EEEEecC
Q 006275 593 VITVSHD 599 (652)
Q Consensus 593 vi~vsHd 599 (652)
+|++||.
T Consensus 118 iiits~~ 124 (149)
T 2kjq_A 118 LLLGSEY 124 (149)
T ss_dssp EEEEESS
T ss_pred EEEECCC
Confidence 8888884
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-14 Score=156.87 Aligned_cols=61 Identities=13% Similarity=0.228 Sum_probs=51.5
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~ 159 (652)
.++++++++.|+...+|+++ +. ++|++++|+|||||||||||++|+|+++|++|+|.+.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 35667777777666688888 53 899999999999999999999999999999999987654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-12 Score=125.77 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=36.0
Q ss_pred ccCCCeEEEeCCCC-CCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 006275 275 LQDPDLLLLDEPTN-HLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (652)
Q Consensus 275 ~~~p~iLLLDEPts-~LD~~~~~~l~~~L~---~~g~tvIivsHd~~ 317 (652)
+.+|++|+||||++ ++|+..+..+.+++. +.++++|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 34999999999995 999999998888764 36899999999753
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-11 Score=128.90 Aligned_cols=142 Identities=13% Similarity=0.124 Sum_probs=82.1
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHH--HhCCCCCCee-----EEEECceecccceecccccccCCCCCCHHHHHHHhhhhc
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKL--IMGLEKPRGG-----EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~--l~g~~~p~~G-----~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~ 518 (652)
-|++|++++|+||||||||||++. +.++.+++.| .+++++.... .
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~----~------------------------ 225 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF----R------------------------ 225 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC----C------------------------
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc----C------------------------
Confidence 488999999999999999999994 4577776544 5666654210 0
Q ss_pred cHHHHHHHHhhCCCChhhh--ccCcCCCCHHHH--HHHHHHHHHc--cCCCeEEEeCCCCCCCHHHH------------H
Q 006275 519 RIDDIKGLLGRCNFKADML--DRKVSLLSGGEK--ARLAFCKFMV--KPSTLLVLDEPTNHLDIPSK------------E 580 (652)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~--~~~~~~LSgGqr--qrv~LAral~--~~p~lLlLDEPt~~LD~~~~------------~ 580 (652)
..++.....++++..... +-.+.....++. +.+.-++.++ .+|+++++|||++.+|.... .
T Consensus 226 -~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~ 304 (400)
T 3lda_A 226 -PVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLA 304 (400)
T ss_dssp -HHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHH
Confidence 001111122222211000 001111122333 3333333332 57999999999999996432 2
Q ss_pred HHHHHH----HhcCceEEEEecCH-------------------HHHHhhccEEEEEeCC
Q 006275 581 MLEEAI----SEYKGTVITVSHDR-------------------YFVKQIVNRVVEVKGS 616 (652)
Q Consensus 581 ~l~~~l----~~~~~tvi~vsHd~-------------------~~i~~~~drvi~l~~g 616 (652)
.+.+.| ++++.|||+|+|.. ..+..++|.++.|+.+
T Consensus 305 ~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 305 KFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 333333 34577999999983 2357779999999865
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.2e-14 Score=133.65 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=31.3
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKS 159 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~p~---~G~i~~~~~ 159 (652)
++++|+|+||||||||+++|+|+++|+ .|.|.+++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 589999999999999999999999998 899998764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-12 Score=139.26 Aligned_cols=152 Identities=20% Similarity=0.205 Sum_probs=94.4
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC-----------CCCCeeEEEECc-eecc----cceecccccccCCC
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGE-HNVL----PNYFEQNQAEALDL 503 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~-----------~~p~~G~i~~~g-~~~~----~~~~~~~~~~~~~~ 503 (652)
-++++|+++.|++++|+|+|||||||||++|+|. +.|..|.|.+++ ..+. +++... ... ..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~--~~ 223 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASE--GK 223 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGG--SC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccc-hhh--hh
Confidence 3789999999999999999999999999999998 456667776654 2211 111100 000 00
Q ss_pred CCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH
Q 006275 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583 (652)
Q Consensus 504 ~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~ 583 (652)
.+.. ..+.. .+.+..++..+++. +.++.+||+|++|++.+|++|+..|.||+| |.+|......+.
T Consensus 224 ~L~~-~fl~~------~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~ 288 (416)
T 1udx_A 224 GLGL-EFLRH------IARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVK 288 (416)
T ss_dssp CSCH-HHHHH------HTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHH
T ss_pred hhhH-HHHHH------HHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHH
Confidence 0110 00000 00111223333332 456778999999999999999999999999 999987664333
Q ss_pred HHH---HhcCceEEEEe-cCHHHHHhhccE
Q 006275 584 EAI---SEYKGTVITVS-HDRYFVKQIVNR 609 (652)
Q Consensus 584 ~~l---~~~~~tvi~vs-Hd~~~i~~~~dr 609 (652)
++. .+.+.++++|| |..+-+..+++.
T Consensus 289 ~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 289 ALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 333 33344666555 555445544443
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-11 Score=129.89 Aligned_cols=137 Identities=12% Similarity=0.148 Sum_probs=76.7
Q ss_pred EEEEECCCCccHHHHHHHHHc-CCCCCCcEEEECCCC--------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHH
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSN--------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G-~~~p~~G~i~~~~~~--------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~ 195 (652)
.+.|+||||+|||||+++|+| ++.|..|.+.+++.. ..+++++|.+.+..+.+-.. . ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-------- 105 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG-N---ND-------- 105 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------CC--------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcC-C---cc--------
Confidence 399999999999999999999 788999998876532 34677777654322211000 0 00
Q ss_pred HHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 006275 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (652)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~ 275 (652)
.....+.+.++....++. ... .||| +.
T Consensus 106 ------------------------------------~~~~~~~i~~~~~~~~~~-----~~~-~ls~-----------l~ 132 (354)
T 1sxj_E 106 ------------------------------------RIVIQELLKEVAQMEQVD-----FQD-SKDG-----------LA 132 (354)
T ss_dssp ------------------------------------HHHHHHHHHHHTTTTC----------------------------
T ss_pred ------------------------------------hHHHHHHHHHHHHhcccc-----ccc-cccc-----------cC
Confidence 000011111222222221 111 5676 78
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH-HhhcCeEE
Q 006275 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL-DQLCTKIV 327 (652)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l-~~~~d~ii 327 (652)
.+|+++|+|||++ ||+.+.+.|.+.|.+ .++++|++||+.+.+ ..+.+|+.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 186 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL 186 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSE
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhce
Confidence 8999999999999 999999999998864 467899999997643 23344543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=126.36 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=29.3
Q ss_pred EEECCCEEEEECCCCccHHHHHH--HHHcCCCCCCc
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLR--IIAGQEEPDSG 152 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~--~L~G~~~p~~G 152 (652)
-|++|++++|+||||||||||++ ++.+..+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 58999999999999999999999 45677777554
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-12 Score=134.68 Aligned_cols=122 Identities=17% Similarity=0.138 Sum_probs=82.6
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE---CCCCc----------eEEEEeccCccC-----CCCCHHH
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEVS-----MSRTVRE 180 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~---~~~~~----------~i~~v~Q~~~~~-----~~~Tv~e 180 (652)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ .|.+. .+||++|+|.+. +.+|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 44579999999999999999999999 99999999998 55321 379999998654 56788 7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCC
Q 006275 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (652)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~L 260 (652)
|+...|.+- ..+.-.+..+ ....+....+.++++.+|+.....++++..|
T Consensus 239 ~l~~~f~~~-------~~~~c~~~~~-----------------------~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 288 (302)
T 2yv5_A 239 EVRNYFREF-------LRYQCKYPDC-----------------------THTNEPGCAVKEAVKNGEISCERYKSYLKII 288 (302)
T ss_dssp GGGGGCGGG-------HHHHHHSTTC-----------------------CSSSCTTCHHHHHHHTTSSCHHHHHHHHHHT
T ss_pred HHHHHHHHH-------HHccCCCCCC-----------------------CCCCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 774333210 0000000000 0111223457788999999754678889999
Q ss_pred ChHHHHHHHHHH
Q 006275 261 SSGWQMRMSLGK 272 (652)
Q Consensus 261 SGGqkqRv~LAr 272 (652)
||.+++++.|||
T Consensus 289 s~~~~R~~~~~~ 300 (302)
T 2yv5_A 289 KVYLEEIKELCR 300 (302)
T ss_dssp TCCCTTHHHHSS
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-12 Score=140.46 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=92.0
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc----------------ceecccccccCCC
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEALDL 503 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~~~~~~~~~~ 503 (652)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.+.+... .++.|. ..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~--~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQH--TGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCS--TTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecc--cCcCH
Confidence 367899999999999999999999999999999999999999997655421 122222 22344
Q ss_pred CCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHc-cCC-CeEEEeCCCCCCCHHHHHH
Q 006275 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPS-TLLVLDEPTNHLDIPSKEM 581 (652)
Q Consensus 504 ~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~-~~p-~lLlLDEPt~~LD~~~~~~ 581 (652)
..++.+++........ + .-+++..|.... ....+. -.+|++.+++++. ..| .+||...||.|.|... .
T Consensus 361 ~~tV~e~l~~a~~~~~-D--vVLIDTaGrl~~-~~~lm~----EL~kiv~iar~l~~~~P~evLLvLDattGq~al~--~ 430 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNI-D--VLIADTAGRLQN-KSHLME----ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS--Q 430 (503)
T ss_dssp HHHHHHHHHHHHHTTC-S--EEEECCCCSCCC-HHHHHH----HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--H
T ss_pred HHHHHHHHHHHHhcCC-C--EEEEeCCCccch-hhhHHH----HHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH--H
Confidence 5567777765432110 0 001222222110 011111 2347888888774 346 3555555888865442 2
Q ss_pred HHHHHHhcCceEEEEecCHHH
Q 006275 582 LEEAISEYKGTVITVSHDRYF 602 (652)
Q Consensus 582 l~~~l~~~~~tvi~vsHd~~~ 602 (652)
+..+-...+.|.|++|| ++.
T Consensus 431 ak~f~~~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 431 AKLFHEAVGLTGITLTK-LDG 450 (503)
T ss_dssp HHHHHHHTCCSEEEEEC-GGG
T ss_pred HHHHHhhcCCCEEEEEc-CCC
Confidence 33333345679999999 444
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.15 E-value=5.3e-12 Score=134.08 Aligned_cols=114 Identities=18% Similarity=0.047 Sum_probs=70.0
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEEC-ceecc------cceecccccccCCCCCCHHHHH
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLG-EHNVL------PNYFEQNQAEALDLDKTVLETV 511 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-p~~G~i~~~-g~~~~------~~~~~~~~~~~~~~~~tv~e~~ 511 (652)
++++++. .+|++++|+||||||||||+++|+|+.. |.+|.|.+. |.... ..++.|. ..+....++.++.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~--~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHG--GDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTS--CEEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCC--CEecCcccHHHhh
Confidence 3444443 3799999999999999999999999999 999999876 53321 1233332 2233344555431
Q ss_pred HHhhhh-ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 512 AEAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 512 ~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
...... .....+.++++.+++. .+.++.+.+|| ||+||++||+++
T Consensus 283 l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 LWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred hcCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHHhcC
Confidence 110000 0012245677778874 56789999999 999999999875
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-13 Score=143.72 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=66.5
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEE-------------------ECCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEV-------------------KKGEKVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVI 155 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i-------------------~~Ge~~~lvG~NGsGKSTLl~~L~G~~~--p~~G~i~ 155 (652)
.|+++||++.| .++++++++.+ ++|+++||+||||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 48899999999 46899999988 8999999999999999999999999988 9999998
Q ss_pred E---CCCCc------eEEEEeccCccCCCCCHHHHH
Q 006275 156 K---AKSNM------KIAFLSQEFEVSMSRTVREEF 182 (652)
Q Consensus 156 ~---~~~~~------~i~~v~Q~~~~~~~~Tv~e~i 182 (652)
+ ++... .++++ |.+......++.+++
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~ 149 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLV 149 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHH
T ss_pred EEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHH
Confidence 8 65321 24555 554444455666654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-14 Score=141.63 Aligned_cols=151 Identities=18% Similarity=0.225 Sum_probs=79.9
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCC-------------CCeeEEEECceeccc---ceeccc-ccccCCCCCCHHHH
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK-------------PRGGEVLLGEHNVLP---NYFEQN-QAEALDLDKTVLET 510 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-------------p~~G~i~~~g~~~~~---~~~~~~-~~~~~~~~~tv~e~ 510 (652)
++|++++|+||||||||||+++|+|+++ |..|. ++|.++.. ..+... ....+.+..++.+|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n 79 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEHAEFSGN 79 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEEEEETTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEeeeeecCc
Confidence 5799999999999999999999999875 55554 24432210 000000 00000001111111
Q ss_pred HHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHH---HHHH-HHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 006275 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL---AFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (652)
Q Consensus 511 ~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv---~LAr-al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 586 (652)
+ ++ ....++.+.++.-.. ...+.. -.|-++.. ..|+ +++.+|++++|||||+++|.++.+.+++.|
T Consensus 80 ~-~g---~~~~~i~~~~~~~~~--~~~~~~----~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l 149 (198)
T 1lvg_A 80 L-YG---TSKEAVRAVQAMNRI--CVLDVD----LQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRL 149 (198)
T ss_dssp E-EE---EEHHHHHHHHHTTCE--EEEECC----HHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred c-CC---CCHHHHHHHHHcCCc--EEEECC----HHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 1 00 123334444432110 000000 01111110 1456 788899999999999999999999998888
Q ss_pred HhcCceEEEEecCHHHHHhhccEEEEEeC
Q 006275 587 SEYKGTVITVSHDRYFVKQIVNRVVEVKG 615 (652)
Q Consensus 587 ~~~~~tvi~vsHd~~~i~~~~drvi~l~~ 615 (652)
.....- +.++| .. ..+|+|++.++
T Consensus 150 ~~~~~~-~~~a~--~~--~~~D~iivnd~ 173 (198)
T 1lvg_A 150 AAARTD-MESSK--EP--GLFDLVIINDD 173 (198)
T ss_dssp HHHHHH-TTGGG--ST--TTCSEEEECSS
T ss_pred HHHHHH-HHHhh--cc--CCceEEEECCC
Confidence 654221 24456 22 45898877653
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-12 Score=135.06 Aligned_cols=136 Identities=14% Similarity=0.047 Sum_probs=78.0
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~ 200 (652)
+++.+++|+|++|||||||++.|.+++.+. |. ....+.+|+|+...+ ..++++|+.....+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~-----~~~~~~iv~~D~f~~-~~~~~~~l~~~~~~~----------- 90 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG-----GEKSIGYASIDDFYL-THEDQLKLNEQFKNN----------- 90 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG-----GGSCEEEEEGGGGBC-CHHHHHHHHHHTTTC-----------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC-----CCceEEEeccccccC-ChHHHHHHhcccccc-----------
Confidence 467899999999999999999999998763 20 012355669997653 446666653210000
Q ss_pred HHHhh--hcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC---CCcccccCCCCCCChHHHHHHHHHHHHc
Q 006275 201 KALES--AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG---FTADDGDRLVASFSSGWQMRMSLGKILL 275 (652)
Q Consensus 201 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg---l~~~~~~~~~~~LSGGqkqRv~LAraL~ 275 (652)
..+.. .+. ..+...+.+.+..+...+. -...........+||||+||+++|++..
T Consensus 91 ~l~~~~g~p~--------------------a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~ 150 (290)
T 1odf_A 91 KLLQGRGLPG--------------------THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIK 150 (290)
T ss_dssp GGGSSSCSTT--------------------SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEE
T ss_pred chhhhccCcc--------------------hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceE
Confidence 00000 000 0111111222222211100 0001122334789999999999983333
Q ss_pred cCCCeEEEeCCCCCCCHHH
Q 006275 276 QDPDLLLLDEPTNHLDLDT 294 (652)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~ 294 (652)
.+|+|||+||||++||+..
T Consensus 151 ~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 151 LPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSEEEEEESSTTCCCCC
T ss_pred cCCCEEEEeCccccCCccc
Confidence 3999999999999999864
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.8e-13 Score=130.66 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=84.6
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHH
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKP---RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~ 523 (652)
.++|++++|+||||||||||+++|+|+++| ..|.|.++|..+...... +. ....... + ........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~-~~--~~~~~~~----~---~~~~~~~~~ 88 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLE-PR--GLLPRKG----A---PETFDFEGF 88 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHG-GG--TCGGGTT----S---GGGBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHH-Hh--cccccCC----C---CchhhHHHH
Confidence 468999999999999999999999999985 578888877543211100 00 0000000 0 001111112
Q ss_pred HHHHhhC----CCChhhhccCcCCCCHHHHHHHHHH-HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEec
Q 006275 524 KGLLGRC----NFKADMLDRKVSLLSGGEKARLAFC-KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH 598 (652)
Q Consensus 524 ~~~L~~~----~l~~~~~~~~~~~LSgGqrqrv~LA-ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsH 598 (652)
.+.+..+ ++.....+ ....+|+||+|++++| ++++.++.++++|||.. ..+.+....+|++.+
T Consensus 89 ~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd~ 156 (208)
T 3c8u_A 89 QRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLEV 156 (208)
T ss_dssp HHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEECC
T ss_pred HHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEeC
Confidence 2222211 11111122 2235799999999998 88888888888999842 112333457888888
Q ss_pred CHHH-HHhhccE
Q 006275 599 DRYF-VKQIVNR 609 (652)
Q Consensus 599 d~~~-i~~~~dr 609 (652)
+.+. +.+.+.|
T Consensus 157 ~~~~~~~R~~~R 168 (208)
T 3c8u_A 157 PMADLEARLVQR 168 (208)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 8876 5555555
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-13 Score=132.74 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=81.6
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHH
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~ 199 (652)
.++|++++|+||||||||||+++|+|+++|. | ..+++++++.... ..+..+++.. +..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------~~~g~v~~d~~~~-~~~~~~~~~~-~~~----------- 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------LPAEVVPMDGFHL-DNRLLEPRGL-LPR----------- 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------CCEEEEESGGGBC-CHHHHGGGTC-GGG-----------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------CceEEEecCCCcC-CHHHHHHhcc-ccc-----------
Confidence 4789999999999999999999999999875 4 1366777764332 1111211100 000
Q ss_pred HHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHH-HHHccCC
Q 006275 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG-KILLQDP 278 (652)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LA-raL~~~p 278 (652)
..... ..+...+...+..+-..-.+..+..++ ...+|+||+||+++| ++++.++
T Consensus 77 ----~~~~~--------------------~~~~~~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg 131 (208)
T 3c8u_A 77 ----KGAPE--------------------TFDFEGFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEG 131 (208)
T ss_dssp ----TTSGG--------------------GBCHHHHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEE
T ss_pred ----CCCCc--------------------hhhHHHHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECC
Confidence 00000 000001111111111110111122333 356799999999998 8888888
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHH-HHhhcCe
Q 006275 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAF-LDQLCTK 325 (652)
Q Consensus 279 ~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~-l~~~~d~ 325 (652)
.++++|||.- ..+.+.--.+|+++++.+. +.+.+.|
T Consensus 132 ~~~l~de~~~-----------~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 132 NYLLFDAPGW-----------RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp SSTTBCSTTG-----------GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred ceeccCCchh-----------HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 8888888731 1122222367778877775 4444444
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.12 E-value=9.9e-11 Score=124.11 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=69.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CCCCCeeEEEECceecc--------cceecccccccCCCCCCHHHHHHHhhhhccHHH
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVL--------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD 522 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g-~~~p~~G~i~~~g~~~~--------~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~ 522 (652)
.+.|+||||+|||||+++|+| ++.|..|.+.++|.++. ..++.+.....+..... .......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM---------GNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhc---------CCcchHH
Confidence 389999999999999999999 88999999988875432 01111111000111000 0001011
Q ss_pred HHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCH
Q 006275 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDR 600 (652)
Q Consensus 523 ~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~ 600 (652)
+++.++.+.-... .+... .||| +..+|+++|||||++ ||..+...+.+.+.+.. .++|++||+.
T Consensus 109 ~~~~i~~~~~~~~-~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 109 IQELLKEVAQMEQ-VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp HHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred HHHHHHHHHHhcc-ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 2222222211000 11111 4566 788999999999999 99999999999999864 4899999997
Q ss_pred HH
Q 006275 601 YF 602 (652)
Q Consensus 601 ~~ 602 (652)
+.
T Consensus 175 ~~ 176 (354)
T 1sxj_E 175 SP 176 (354)
T ss_dssp CS
T ss_pred HH
Confidence 54
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.11 E-value=3e-12 Score=132.81 Aligned_cols=120 Identities=13% Similarity=0.009 Sum_probs=75.2
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccccee-cccccccCCCCCCHHHHHHHhh------------
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF-EQNQAEALDLDKTVLETVAEAA------------ 515 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~-~~~~~~~~~~~~tv~e~~~~~~------------ 515 (652)
++.++||+|++|||||||.+.|.+++.+. | .......+ .++ .. ....+..+++....
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D--~f-~~~~~~~~~l~~~~~~~~l~~~~g~p 99 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASID--DF-YLTHEDQLKLNEQFKNNKLLQGRGLP 99 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGG--GG-BCCHHHHHHHHHHTTTCGGGSSSCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccc--cc-cCChHHHHHHhccccccchhhhccCc
Confidence 56789999999999999999999999763 2 00111111 222 11 12335566665431
Q ss_pred hhccHHHHHHHHhhCCCC-------hhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH
Q 006275 516 EDWRIDDIKGLLGRCNFK-------ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578 (652)
Q Consensus 516 ~~~~~~~~~~~L~~~~l~-------~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~ 578 (652)
.......+.+.+..+.-. ......+...+||||+||+++|++...+|+|||+||||+++|+..
T Consensus 100 ~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 100 GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred chhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 112334455555554321 001223346799999999999843333999999999999999864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.6e-13 Score=126.52 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEECceeccc--------------c----eecccccccCCCCCCHHH
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHNVLP--------------N----YFEQNQAEALDLDKTVLE 509 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~--------------~----~~~~~~~~~~~~~~tv~e 509 (652)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++.. + ++.|+. .++. .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~--~~~i----~~ 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVK--LAFI----RR 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSE--EEEE----EE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCc--EEEE----ec
Confidence 589999999999999999999999998 8999999876311 1 111110 0000 00
Q ss_pred HHHHhhhhccHHHHHHHHhh-C-CCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 510 TVAEAAEDWRIDDIKGLLGR-C-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 510 ~~~~~~~~~~~~~~~~~L~~-~-~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
..... ...+.+.+.. + ++..... ..|||||+||++||||++.+|++.
T Consensus 77 ----~~~~~-~a~l~~~i~~~l~g~dt~i~----EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VSEEE-GNDLDWIYERYLSDYDLVIT----EGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CCHHH-HTCHHHHHHHHTTTCSEEEE----ESCGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CChhh-hhCHHHHHHhhCCCCCEEEE----CCcCCCCCcEEEEEecccCCCccC
Confidence 00000 0022333333 2 3432222 249999999999999999998873
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-13 Score=145.56 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=108.8
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHc------------CCCCCCcEEEECCCC-----------c---eEEEEeccCcc
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG------------QEEPDSGNVIKAKSN-----------M---KIAFLSQEFEV 172 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G------------~~~p~~G~i~~~~~~-----------~---~i~~v~Q~~~~ 172 (652)
.+++|..++|||+||+|||||+++|+| .+.|+.|.|.+.+.+ . ...++.+.|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 556899999987521 1 23467788877
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccc
Q 006275 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (652)
Q Consensus 173 ~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (652)
....+..+++...|.. .+.. . +.++.-+...
T Consensus 96 ~~~~s~~e~L~~~fl~-------------~ir~------------------------~---------d~il~Vvd~~--- 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLS-------------HVRA------------------------V---------DAIYQVVRAF--- 126 (392)
T ss_dssp CCCCCSSSSSCHHHHH-------------HHTT------------------------C---------SEEEEEEECC---
T ss_pred ccCCcHHHHHHHHHHH-------------HHHH------------------------H---------HHHHHHHhcc---
Confidence 6665554433111100 0000 0 0111112211
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCeE
Q 006275 253 GDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d~i 326 (652)
.+..+..+||+. +| +++++|||+.++|+...+...+.+ .+.|.|++ +|....+..+|+++
T Consensus 127 ~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i 192 (392)
T 1ni3_A 127 DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKV 192 (392)
T ss_dssp CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHH
T ss_pred ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHH
Confidence 134456677763 99 999999999999999987776654 33466653 99999999999999
Q ss_pred E-EEcCC-eEEEecCChH
Q 006275 327 V-ETEMG-VSRTYEGNYS 342 (652)
Q Consensus 327 i-~l~~G-~~~~~~g~~~ 342 (652)
. .|++| +. .+.|.++
T Consensus 193 ~~~L~~G~~~-~~~~~~~ 209 (392)
T 1ni3_A 193 YQYLTETKQP-IRKGDWS 209 (392)
T ss_dssp HHHHHTTCSC-GGGSCCC
T ss_pred HHHhccCCce-eecCCCC
Confidence 9 89999 65 3446543
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-12 Score=137.51 Aligned_cols=133 Identities=14% Similarity=0.023 Sum_probs=88.3
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEE-------------------EcCeEEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEE
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTI-------------------ERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRGGEVL 482 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i-------------------~~Ge~~~i~G~NGsGKSTLl~~l~g~~~--p~~G~i~ 482 (652)
+|+++||++.|+ ++++++++.+ .+|+++||+||||||||||+++|+|++. |++|.|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 488999999994 7899999988 9999999999999999999999999998 9999999
Q ss_pred E---Cceeccc------ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHH
Q 006275 483 L---GEHNVLP------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553 (652)
Q Consensus 483 ~---~g~~~~~------~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~ 553 (652)
+ +|..... +++ + ....+...++.+++....... . + ......+....+.+ +|+.
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q--~~~~~~~~~~~~~~~~~~~l~---------~--~--~~~i~~P~~~~~~~--~~~~ 176 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-K--KKGFPESYDMHRLVKFVSDLK---------S--G--VPNVTAPVYSHLIY--DVIP 176 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-T--CTTSGGGBCHHHHHHHHHHHT---------T--T--CSCEEECCEETTTT--EECT
T ss_pred EEecCCccCcHHHHHhCCEe-e--cCCCCCCccHHHHHHHHHHHh---------C--C--CCceeccccccccc--Cccc
Confidence 8 7754311 112 1 112234456666654432111 0 0 00012233233333 3333
Q ss_pred HHHHHccCCCeEEEeCCCCCCCH
Q 006275 554 FCKFMVKPSTLLVLDEPTNHLDI 576 (652)
Q Consensus 554 LAral~~~p~lLlLDEPt~~LD~ 576 (652)
.+.+.+.+++++|+|.|....+.
T Consensus 177 ~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 177 DGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp TCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccceecCCCCEEEECchhhCCCc
Confidence 33355678999999999988873
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.4e-11 Score=110.06 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=30.6
Q ss_pred eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Q 006275 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (652)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G 152 (652)
+++++ +|+.++|+||||||||||+++|+|.+.+ +|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 55555 8999999999999999999999998876 35
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.7e-11 Score=121.74 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=86.5
Q ss_pred eceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccH
Q 006275 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520 (652)
Q Consensus 441 ~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~ 520 (652)
++++|+ +|++++|+|+||+||||+++.|++.+.+..|+|.+.+.+...... .+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~--------------~~q---------- 144 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA--------------REQ---------- 144 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH--------------HHH----------
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhH--------------HHH----------
Confidence 566777 899999999999999999999999999888999887654321000 000
Q ss_pred HHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC-CCCCCHHHHHHHHHHHHhcC--ceEEEEe
Q 006275 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP-TNHLDIPSKEMLEEAISEYK--GTVITVS 597 (652)
Q Consensus 521 ~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP-t~~LD~~~~~~l~~~l~~~~--~tvi~vs 597 (652)
...+.+..++.- .... ...+..+.+|.+|+++...+++++|+||| +.++|......+.++..... .+++++.
T Consensus 145 --l~~~~~~~~l~~--~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 145 --LRLLGEKVGVPV--LEVM-DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp --HHHHHHHHTCCE--EECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred --HHHhcccCCeEE--EEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 011122233321 1000 01234456788999998899999999999 99999988888877776442 3454444
Q ss_pred c
Q 006275 598 H 598 (652)
Q Consensus 598 H 598 (652)
.
T Consensus 220 ~ 220 (295)
T 1ls1_A 220 A 220 (295)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.3e-13 Score=140.74 Aligned_cols=168 Identities=20% Similarity=0.258 Sum_probs=106.2
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECC-------CEEEEECCCCccHHHHHHHHHcCC----CCCCcEEEECCC-------
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKG-------EKVGLVGVNGAGKTTQLRIIAGQE----EPDSGNVIKAKS------- 159 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~G-------e~~~lvG~NGsGKSTLl~~L~G~~----~p~~G~i~~~~~------- 159 (652)
++.++++..|+...+++++++.|++| +.++|+||||+|||||+++|+|++ .+.+|.+...+.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 55567777788878999999999887 899999999999999999999998 666776654321
Q ss_pred ---CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHH
Q 006275 160 ---NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (652)
Q Consensus 160 ---~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (652)
...|.|++|...+.. ++.+++...+ +.... +.+ +......
T Consensus 99 ~~~~~~v~~iDE~~~l~~--~~~e~L~~~~-----------------~~~~~--~i~----------------~~~~~~~ 141 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK--AVEELLYSAI-----------------EDFQI--DIM----------------IGKGPSA 141 (334)
T ss_dssp HCCTTCEEEEETGGGCCH--HHHHHHHHHH-----------------HTSCC--CC------------------------
T ss_pred HccCCCEEEEcchhhcCH--HHHHHHHHHH-----------------Hhccc--cee----------------eccCccc
Confidence 236899988765432 5555543111 00000 000 0000111
Q ss_pred HHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 006275 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (652)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIiv 312 (652)
..+...+..+++. .....+..||+|++||+.++ .+||+.+.+.+.++|++ .+ +
T Consensus 142 ~~i~~~l~~~~li--~at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~ 198 (334)
T 1in4_A 142 KSIRIDIQPFTLV--GATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----V 198 (334)
T ss_dssp -------CCCEEE--EEESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----C
T ss_pred ccccccCCCeEEE--EecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----C
Confidence 2333445555553 24566789999999998655 67787777777766642 33 3
Q ss_pred ecCHHHHHhhcCe
Q 006275 313 SHDRAFLDQLCTK 325 (652)
Q Consensus 313 sHd~~~l~~~~d~ 325 (652)
+|+.+.+..+|++
T Consensus 199 ~~~~~~~~~ia~~ 211 (334)
T 1in4_A 199 EIEDAAAEMIAKR 211 (334)
T ss_dssp CBCHHHHHHHHHT
T ss_pred CcCHHHHHHHHHh
Confidence 6888887777664
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.7e-13 Score=143.35 Aligned_cols=158 Identities=15% Similarity=0.141 Sum_probs=101.3
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhC------------CCCCCeeEEEECceecc-------c-------ceecccccc
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMG------------LEKPRGGEVLLGEHNVL-------P-------NYFEQNQAE 499 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g------------~~~p~~G~i~~~g~~~~-------~-------~~~~~~~~~ 499 (652)
.+.+|.++||+|+||+|||||+++|+| ...|+.|.+.+.|..+. + ..+.+ .+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD--~p 93 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFD--IA 93 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEEC--TG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEe--cc
Confidence 346899999999999999999999999 66799999999873220 0 01111 11
Q ss_pred cCCCCCCHHHHHH--HhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC--CeEEEeCCCCCCC
Q 006275 500 ALDLDKTVLETVA--EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS--TLLVLDEPTNHLD 575 (652)
Q Consensus 500 ~~~~~~tv~e~~~--~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p--~lLlLDEPt~~LD 575 (652)
.+....+..+++. +..... .+..++..++. ..+..+..+|++. +| +++++|||+.++|
T Consensus 94 Gl~~~~s~~e~L~~~fl~~ir---~~d~il~Vvd~---~~d~~i~~v~~~~------------dP~~di~ildeel~~~D 155 (392)
T 1ni3_A 94 GLTKGASTGVGLGNAFLSHVR---AVDAIYQVVRA---FDDAEIIHVEGDV------------DPIRDLSIIVDELLIKD 155 (392)
T ss_dssp GGCCCCCSSSSSCHHHHHHHT---TCSEEEEEEEC---CCTTCSSCCSSSS------------CHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHH---HHHHHHHHHhc---cccceeeeecccc------------CcchhhhhchhhhHHHH
Confidence 2222222211110 000000 00001111111 1134455566653 89 9999999999999
Q ss_pred HHHHHHHHHHHHhc-C---ceEEEEecCHHHHHhhccEEE-EEeCC-EEEeecCChh
Q 006275 576 IPSKEMLEEAISEY-K---GTVITVSHDRYFVKQIVNRVV-EVKGS-NLQDYAGDYN 626 (652)
Q Consensus 576 ~~~~~~l~~~l~~~-~---~tvi~vsHd~~~i~~~~drvi-~l~~g-~i~~~~g~~~ 626 (652)
+...+...+.+... . .|+ ++|+...+..+|+++. +|++| ++.. .|.++
T Consensus 156 ~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~-~~~~~ 209 (392)
T 1ni3_A 156 AEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIR-KGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGG-GSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceee-cCCCC
Confidence 99999888888765 3 354 3999999999999999 89999 7753 35444
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.2e-11 Score=122.76 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=72.8
Q ss_pred EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHH
Q 006275 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (652)
Q Consensus 444 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~ 523 (652)
++...+|++++|+|+|||||||+++.|++.+.+.+|+|.+.+.+... . ... +++
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r------~--------~a~------------eqL 151 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR------A--------AAI------------EQL 151 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC------H--------HHH------------HHH
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc------H--------HHH------------HHH
Confidence 44567899999999999999999999999999888888876654210 0 001 112
Q ss_pred HHHHhhCCCChhhhccCcCCCCHHHHHHH---HHHHHHccCCCeEEEeCCCC
Q 006275 524 KGLLGRCNFKADMLDRKVSLLSGGEKARL---AFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqrqrv---~LAral~~~p~lLlLDEPt~ 572 (652)
..++++.++. .+..+|+|+.+++ +|++++..+|+++|+|||..
T Consensus 152 ~~~~~~~gl~------~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 152 KIWGERVGAT------VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHTCE------EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHcCCc------EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 3344455552 1335789999999 99999999999999999975
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-10 Score=116.87 Aligned_cols=135 Identities=14% Similarity=0.216 Sum_probs=87.7
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~ 200 (652)
++|++++|+|+||+||||++..|++.+.+.+|. ++.++.+++. ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~--------~V~lv~~D~~---r~~a~eqL~~---------------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK--------KIAFITTDTY---RIAAVEQLKT---------------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC--------CEEEEECCCS---STTHHHHHHH----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--------EEEEEecCcc---cchHHHHHHH----------------
Confidence 479999999999999999999999999877772 4677777752 2333333210
Q ss_pred HHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCe
Q 006275 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280 (652)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~i 280 (652)
..+..|++.. ...+ +...+.+|++ +.+|++
T Consensus 156 -----------------------------------------~~~~~gl~~~------~~~~-~~~l~~al~~--~~~~dl 185 (296)
T 2px0_A 156 -----------------------------------------YAELLQAPLE------VCYT-KEEFQQAKEL--FSEYDH 185 (296)
T ss_dssp -----------------------------------------HHTTTTCCCC------BCSS-HHHHHHHHHH--GGGSSE
T ss_pred -----------------------------------------HHHhcCCCeE------ecCC-HHHHHHHHHH--hcCCCE
Confidence 0111233210 0112 3445666765 499999
Q ss_pred EEEeCCCCCCCHHHHHHHH---HHHcc--CCCeEEEE--ecCHHHHHhhcCeEEEEcCCeE
Q 006275 281 LLLDEPTNHLDLDTIEWLE---GYLGK--QDVPMVII--SHDRAFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 281 LLLDEPts~LD~~~~~~l~---~~L~~--~g~tvIiv--sHd~~~l~~~~d~ii~l~~G~~ 334 (652)
+|+| |+|+|+.....+. .++.. ...+++++ +|....+.++|+++..+..+++
T Consensus 186 vIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~gi 244 (296)
T 2px0_A 186 VFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQY 244 (296)
T ss_dssp EEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEE
T ss_pred EEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEE
Confidence 9999 9999986654443 34431 12234444 9999999898988766665555
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.7e-14 Score=143.31 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=40.7
Q ss_pred CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC
Q 006275 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (652)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~ 159 (652)
...+++++++.+++| ++|+||||||||||+++|+|+..+ |.|.++|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~ 78 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGP 78 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETT
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcH
Confidence 445789999999999 999999999999999999999876 67776643
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.2e-13 Score=143.04 Aligned_cols=162 Identities=22% Similarity=0.282 Sum_probs=105.4
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcC-------eEEEEEcCCCCcHHHHHHHHhCCC----CCCeeEEEECceecc----
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERG-------EKTAIIGPNGCGKSTLLKLIMGLE----KPRGGEVLLGEHNVL---- 489 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~G-------e~~~i~G~NGsGKSTLl~~l~g~~----~p~~G~i~~~g~~~~---- 489 (652)
++.++++..|+...+++++++.|.+| +.++|+||||+|||||+++|+|.+ .|.+|.+...+.++.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 45567888888888999999999887 899999999999999999999998 677777765554331
Q ss_pred ------cceecccccccCCCCCCHHHHHHHhhhhc----------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHH
Q 006275 490 ------PNYFEQNQAEALDLDKTVLETVAEAAEDW----------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553 (652)
Q Consensus 490 ------~~~~~~~~~~~~~~~~tv~e~~~~~~~~~----------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~ 553 (652)
..++.+. ..+. .++.+++....... ....+...+..+++. . ..+.+..||+|+|||++
T Consensus 99 ~~~~~~v~~iDE~--~~l~--~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li-~-at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 99 SLERGDVLFIDEI--HRLN--KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV-G-ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HCCTTCEEEEETG--GGCC--HHHHHHHHHHHHTSCCCC---------------CCCEEE-E-EESCGGGSCHHHHTTCS
T ss_pred HccCCCEEEEcch--hhcC--HHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE-E-ecCCcccCCHHHHHhcC
Confidence 0122221 1222 25666664332211 111233345555553 2 56778899999999986
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccE
Q 006275 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNR 609 (652)
Q Consensus 554 LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~dr 609 (652)
++ .+||+.+...+.++|++.... .-++|+.+.+..++++
T Consensus 173 l~----------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 173 II----------------LELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAKR 211 (334)
T ss_dssp EE----------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHHT
T ss_pred ce----------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHh
Confidence 54 788888888888888654210 1136787777666653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-13 Score=137.67 Aligned_cols=138 Identities=14% Similarity=0.182 Sum_probs=89.4
Q ss_pred CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccce----------ecccccccCCCCC
Q 006275 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNY----------FEQNQAEALDLDK 505 (652)
Q Consensus 436 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~----------~~~~~~~~~~~~~ 505 (652)
...+++++++++++| ++|+||||||||||+++|+|...+ |.|.++|.++...+ +.+.. ....+..
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a-~~~~p~i 106 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRA-KNSAPCV 106 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHH-HHTCSEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHH-HhcCCCe
Confidence 445789999999999 999999999999999999999887 78888886653221 11110 0111222
Q ss_pred CHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC------------C
Q 006275 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN------------H 573 (652)
Q Consensus 506 tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~------------~ 573 (652)
++.|++........... .+......++.+.+|||||+||+.|++|+..+|++| |||+. -
T Consensus 107 ~~~Deid~~~~~r~~~~-------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~ 177 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDRE-------TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGL 177 (274)
T ss_dssp EEEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCS
T ss_pred EeeehhhhhhcccCCCc-------chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCC
Confidence 22222221111000000 011123456667789999999999999999999985 99964 3
Q ss_pred CCHHHHHHHHHHHH
Q 006275 574 LDIPSKEMLEEAIS 587 (652)
Q Consensus 574 LD~~~~~~l~~~l~ 587 (652)
-|...+..+.+.+.
T Consensus 178 P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 178 PPPADRLAILKTIT 191 (274)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHH
Confidence 46677777766654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-11 Score=124.35 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=73.7
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---Cceecc----------cceecccccc---cCCCCCCHHHHH
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVL----------PNYFEQNQAE---ALDLDKTVLETV 511 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~---~g~~~~----------~~~~~~~~~~---~~~~~~tv~e~~ 511 (652)
..|++++|+||||||||||+++|+ +.+|++|+|.+ +|.++. .+++.|.+.. .+++.+|+ +++
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REV 240 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence 468999999999999999999999 99999999998 776542 2344443211 11246777 776
Q ss_pred H--Hh--------hhh-----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHH
Q 006275 512 A--EA--------AED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 512 ~--~~--------~~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
. +. ... .....+.++++.+++.....++++..|||.+++++.|||
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 21 000 112358899999999755778999999998888899986
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.6e-10 Score=116.64 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=87.9
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCC
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~T 177 (652)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|+|.+.+..|+|.+.+. ++. ...+
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~---------d~~--~~~~ 141 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA---------DTQ--RPAA 141 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC---------CSS--CHHH
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC---------Ccc--cHhH
Confidence 45677888886543 778888 99999999999999999999999999888887766432 221 0000
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCC
Q 006275 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (652)
Q Consensus 178 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (652)
+ +.+ . .+.+..|++.....
T Consensus 142 ~-~ql--------------~-------------------------------------------~~~~~~~l~~~~~~--- 160 (295)
T 1ls1_A 142 R-EQL--------------R-------------------------------------------LLGEKVGVPVLEVM--- 160 (295)
T ss_dssp H-HHH--------------H-------------------------------------------HHHHHHTCCEEECC---
T ss_pred H-HHH--------------H-------------------------------------------HhcccCCeEEEEcC---
Confidence 0 000 0 00111233210000
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCC-CCCCCHHHHHHHHHHHc
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEP-TNHLDLDTIEWLEGYLG 303 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEP-ts~LD~~~~~~l~~~L~ 303 (652)
......+.+|.+|+++...++|++|+||| +.++|......+..+.+
T Consensus 161 ~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 161 DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 11234456789999998899999999999 99999988888766653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=8.4e-10 Score=114.69 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=86.9
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHH
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 526 (652)
.+|++++|+|+|||||||+++.|++.+.+.+| +|.+-+.+. ...+..+.+. .+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~--------------~r~~a~eqL~------------~~ 156 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT--------------YRIAAVEQLK------------TY 156 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC--------------SSTTHHHHHH------------HH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc--------------ccchHHHHHH------------HH
Confidence 47999999999999999999999999988778 555433221 0122333322 22
Q ss_pred HhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C-ceEEEE--ecC
Q 006275 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----K-GTVITV--SHD 599 (652)
Q Consensus 527 L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~-~tvi~v--sHd 599 (652)
.+..|+... . ..+ +..-+.+|++ +.+|+++|+| |+|+|......+.++..-. . .+++++ +|+
T Consensus 157 ~~~~gl~~~-~-----~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 157 AELLQAPLE-V-----CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp HTTTTCCCC-B-----CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred HHhcCCCeE-e-----cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 233343210 0 122 2344566665 4899999999 9999988776666544322 1 244555 999
Q ss_pred HHHHHhhccEEEEEeCCEEE
Q 006275 600 RYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 600 ~~~i~~~~drvi~l~~g~i~ 619 (652)
.+.+.++++++..+..+.++
T Consensus 226 ~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 226 YEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHHHHHhcCCCCEEE
Confidence 99998888876555555554
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-10 Score=118.81 Aligned_cols=42 Identities=29% Similarity=0.266 Sum_probs=36.5
Q ss_pred eeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 116 vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
+++..++|++++|+|+|||||||++..|++.+.+..|+|.+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 456678899999999999999999999999998877776653
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-10 Score=125.15 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=47.1
Q ss_pred eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee
Q 006275 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (652)
Q Consensus 437 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (652)
..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 4579999999999 9999999999999999999999999999999998754
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.91 E-value=6.6e-11 Score=123.40 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=39.8
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE---CCCCc----------eEEEEeccCcc
Q 006275 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEV 172 (652)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~---~~~~~----------~i~~v~Q~~~~ 172 (652)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ .|.+. .+||++|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCC
Confidence 456679999999999999999999999999999999998 55321 37999999854
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-10 Score=124.59 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=60.3
Q ss_pred hccCcCCCCHHHHHHH--HHHHHHcc---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC
Q 006275 537 LDRKVSLLSGGEKARL--AFCKFMVK---------------PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHD 599 (652)
Q Consensus 537 ~~~~~~~LSgGqrqrv--~LAral~~---------------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd 599 (652)
..+....+||||+|.. +|+.++++ .-.+++|||+ +-+|.+..+.+.+++++++--+|+++=+
T Consensus 373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~ 451 (483)
T 3euj_A 373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE 451 (483)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc
Confidence 4556778999999974 33333332 2257999999 9999999999999999999989999988
Q ss_pred HHHHHhhccEEEEEe
Q 006275 600 RYFVKQIVNRVVEVK 614 (652)
Q Consensus 600 ~~~i~~~~drvi~l~ 614 (652)
.+..++|.++.+.
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 6777789888875
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.91 E-value=5.8e-11 Score=123.74 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=43.4
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE---CCCCc-------e--EEEEeccCccCC----CCCHHHH
Q 006275 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM-------K--IAFLSQEFEVSM----SRTVREE 181 (652)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~---~~~~~-------~--i~~v~Q~~~~~~----~~Tv~e~ 181 (652)
+++.+|++++|+||||+|||||+|+|+|+.+|..|+|.+ .|... . ++|++|+|.+.. ..|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 566789999999999999999999999999999999987 44321 1 699999997654 5688 88
Q ss_pred HHHhh
Q 006275 182 FMSAF 186 (652)
Q Consensus 182 i~~~~ 186 (652)
+...|
T Consensus 247 l~~~f 251 (307)
T 1t9h_A 247 LGYTF 251 (307)
T ss_dssp HGGGS
T ss_pred HHHHH
Confidence 75434
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.7e-09 Score=102.54 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=41.7
Q ss_pred cCCCeEEEeCCCCCC--CHHHH-H---HHHHHHccCCCeEEEEecCHHH--------HHhhcCeEEEEcC
Q 006275 276 QDPDLLLLDEPTNHL--DLDTI-E---WLEGYLGKQDVPMVIISHDRAF--------LDQLCTKIVETEM 331 (652)
Q Consensus 276 ~~p~iLLLDEPts~L--D~~~~-~---~l~~~L~~~g~tvIivsHd~~~--------l~~~~d~ii~l~~ 331 (652)
.+|+++++|+|++.+ |+... + .+.+.+++.|+|||+++|.... +.++||.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 54322 2 2334456789999999998776 5678999999874
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-08 Score=101.39 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=40.4
Q ss_pred cCCCeEEEeCCCCCC--CHHHHH-H---HHHHHHhcCceEEEEecCHHH--------HHhhccEEEEEeC
Q 006275 560 KPSTLLVLDEPTNHL--DIPSKE-M---LEEAISEYKGTVITVSHDRYF--------VKQIVNRVVEVKG 615 (652)
Q Consensus 560 ~~p~lLlLDEPt~~L--D~~~~~-~---l~~~l~~~~~tvi~vsHd~~~--------i~~~~drvi~l~~ 615 (652)
.+|+++++|+|+..+ |..... . +.+.+++.+.|||+++|.... +.++||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 553332 2 333334567799999998876 5678999999963
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-10 Score=118.37 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=64.5
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---Cceecc----------cceeccccc--------------c
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVL----------PNYFEQNQA--------------E 499 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~---~g~~~~----------~~~~~~~~~--------------~ 499 (652)
+..|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++. .+++.|.+. .
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~ 245 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELK 245 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHG
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHH
Confidence 4469999999999999999999999999999999998 776542 123333321 2
Q ss_pred cCCCCCCHHHHHHHhhh---hccHHHHHHHHhhCCCChhhhccCcCCCCH
Q 006275 500 ALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSG 546 (652)
Q Consensus 500 ~~~~~~tv~e~~~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSg 546 (652)
.+++.+++ +|+.+... ......+.++|+.+++..+..++++..||+
T Consensus 246 ~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 246 HYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35677788 77765321 112345889999999975677888888885
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.3e-10 Score=124.64 Aligned_cols=167 Identities=11% Similarity=0.039 Sum_probs=97.3
Q ss_pred ceEEEEEcCeEEEEEcCCCCcHHHHHHHHhC--CCCCCeeEEEECceecccceecccccccCCCCC--CHHHHHHHh---
Q 006275 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDK--TVLETVAEA--- 514 (652)
Q Consensus 442 ~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g--~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~--tv~e~~~~~--- 514 (652)
.+++++.++.++.|.|.+||||||+++.|.. +..++.|.+.+...+....-+... ...++. +|.++...+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~---~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY---EGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG---TTCTTBSSSCBCSHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh---ccCCcccceeecCHHHHHHH
Confidence 4678888999999999999999999999876 455555666654444322111100 001111 111111111
Q ss_pred hh-h-ccHHHHHHHHhhCCCChhhhc---cCcCCCCHHHHHHH----------HHHHHHccCCC-eEEEeCCCCCCCHHH
Q 006275 515 AE-D-WRIDDIKGLLGRCNFKADMLD---RKVSLLSGGEKARL----------AFCKFMVKPST-LLVLDEPTNHLDIPS 578 (652)
Q Consensus 515 ~~-~-~~~~~~~~~L~~~~l~~~~~~---~~~~~LSgGqrqrv----------~LAral~~~p~-lLlLDEPt~~LD~~~ 578 (652)
.. . ...++-.+.+...|+. +..+ +....+|+||+|+. ++|+++...|. ++++||++..+|...
T Consensus 236 L~~~~~EmerR~~ll~~~Gv~-~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~ 314 (512)
T 2ius_A 236 LRWCVNEMERRYKLMSALGVR-NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVG 314 (512)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCc-cHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhh
Confidence 10 0 0112223567777763 2221 22235788887752 35667778898 899999999988433
Q ss_pred HHHHHHHH----H---hcCceEEEEecCHH-------HHHhhccEEEEE
Q 006275 579 KEMLEEAI----S---EYKGTVITVSHDRY-------FVKQIVNRVVEV 613 (652)
Q Consensus 579 ~~~l~~~l----~---~~~~tvi~vsHd~~-------~i~~~~drvi~l 613 (652)
..+.+.| + .++.++|++||+.. ...++.+||.+-
T Consensus 315 -~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 315 -KKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp -HHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred -HHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 2233332 2 23559999999987 455666777653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-10 Score=126.51 Aligned_cols=173 Identities=14% Similarity=0.167 Sum_probs=94.4
Q ss_pred eeeEEEECCCEEEEECCCCccHHHHHHHHHc--CCCCCCcEEEECCCCceEEEEeccCccCCCC--CHHHHHHHhhHHHH
Q 006275 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEM 190 (652)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G--~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~--Tv~e~i~~~~~~~~ 190 (652)
.+++.+.++.++.|.|++||||||+++.|.. ++.++.|++.+...+.+. .-.+.....+.. +|.++...+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~el~~~~~lPhl~~~Vvtd~~~a~---- 233 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LELSVYEGIPHLLTEVVTDMKDAA---- 233 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SGGGGGTTCTTBSSSCBCSHHHHH----
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hhhhhhccCCcccceeecCHHHHH----
Confidence 4678888999999999999999999999876 455555665442211110 001111111111 2222211000
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccc--ccCCCCCCChHHHHHH
Q 006275 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD--GDRLVASFSSGWQMRM 268 (652)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~--~~~~~~~LSGGqkqRv 268 (652)
..+..+ ..+++++. +++...|+.+-. ..+....+||||+|+.
T Consensus 234 ---~~L~~~--------------------------------~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~ 277 (512)
T 2ius_A 234 ---NALRWC--------------------------------VNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPD 277 (512)
T ss_dssp ---HHHHHH--------------------------------HHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBC
T ss_pred ---HHHHHH--------------------------------HHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccc
Confidence 000000 01122332 445555553211 0111235788887752
Q ss_pred ----------HHHHHHccCCC-eEEEeCCCCCCCHHH---HHHHHHHH---ccCCCeEEEEecCHH-------HHHhhcC
Q 006275 269 ----------SLGKILLQDPD-LLLLDEPTNHLDLDT---IEWLEGYL---GKQDVPMVIISHDRA-------FLDQLCT 324 (652)
Q Consensus 269 ----------~LAraL~~~p~-iLLLDEPts~LD~~~---~~~l~~~L---~~~g~tvIivsHd~~-------~l~~~~d 324 (652)
++|+++...|. ++++||++..+|... .+.+..+. ++.|.++|++||++. ...++.+
T Consensus 278 ~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~ 357 (512)
T 2ius_A 278 PYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPT 357 (512)
T ss_dssp TTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCE
T ss_pred cccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCC
Confidence 35667778898 899999999988432 12222222 346899999999987 4556666
Q ss_pred eEEE
Q 006275 325 KIVE 328 (652)
Q Consensus 325 ~ii~ 328 (652)
||..
T Consensus 358 RI~l 361 (512)
T 2ius_A 358 RIAF 361 (512)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-09 Score=122.96 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=101.2
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCC-cEEEECCC-----CceEEEEeccCccCC
Q 006275 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKS-----NMKIAFLSQEFEVSM 174 (652)
Q Consensus 101 ~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~-G~i~~~~~-----~~~i~~v~Q~~~~~~ 174 (652)
++++.-|+...+++++++.+.+|+.++|+||||+|||||+++|+|++++.. |.+.+.+. ...++|+++...
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~--- 114 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQG--- 114 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHH---
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchH---
Confidence 344555677789999999999999999999999999999999999999887 66666432 235788877521
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCCh---hcHHHHHHHHhhhcCCCcc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL---DTLDAKVSKLMPELGFTAD 251 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~ll~~lgl~~~ 251 (652)
+.+.......... ..+.....+... .......+.- ........ .........++..+..
T Consensus 115 -----~~~~e~~~~~~~~--~~~~r~~~~~~~--~~~~~~nl~v------~~~~~~~~~~v~~~~~~~~~L~G~~~~--- 176 (604)
T 3k1j_A 115 -----RRIVEKYREKAKS--QESVKSSNMRLK--STVLVPKLLV------DNCGRTKAPFIDATGAHAGALLGDVRH--- 176 (604)
T ss_dssp -----HHHHHHHHHHHHH--HTCC-------------CCCEEEE------CCTTCSSCCEEECTTCCHHHHHCEECC---
T ss_pred -----HHHHHHHHHhhcc--chhhhhhccccc--ccccccceee------ccccCCCCCEEEcCCCCHHhcCceEEe---
Confidence 1111100000000 000000000000 0000000000 00000000 0000011122222211
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q 006275 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (652)
Q Consensus 252 ~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (652)
.......+|+|++|++..++....++.+|+|||.-. |++.....|.+.|.
T Consensus 177 -~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 177 -DPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp -CCC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred -chhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 112235699999999999999999999999999988 89999999988885
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.69 E-value=5.3e-09 Score=115.20 Aligned_cols=175 Identities=10% Similarity=0.075 Sum_probs=99.2
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEECceecccceecccc-cccCCCCCCHHHHHHHh-
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQ-AEALDLDKTVLETVAEA- 514 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~~-~~~~~~~~tv~e~~~~~- 514 (652)
+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .|.+.+.......+.... .... .... +.+..+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~--~~~~-~~l~~g~ 267 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEG--NINA-QNLRTGK 267 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHH--TCCH-HHHHTSC
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHc--CCCH-HHHhcCC
Confidence 457777767999999999999999999999999987765444 444322211110000000 0000 0000 011100
Q ss_pred hhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHc--cCCCeEEEeCCCCCCCHH--------HHHHHHH
Q 006275 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV--KPSTLLVLDEPTNHLDIP--------SKEMLEE 584 (652)
Q Consensus 515 ~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~--~~p~lLlLDEPt~~LD~~--------~~~~l~~ 584 (652)
........+...++.++.. ...-.....+|.+|.+ ..++.+. .+|+++|+|+++...+.. ....+.+
T Consensus 268 l~~~~~~~~~~a~~~l~~~-~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~ 344 (454)
T 2r6a_A 268 LTPEDWGKLTMAMGSLSNA-GIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISR 344 (454)
T ss_dssp CCHHHHHHHHHHHHHHHSS-CEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcC-CEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHH
Confidence 0000011222333333221 1222234579999987 4556665 689999999999987532 1233333
Q ss_pred HHH----hcCceEEEEec---------C--HH--------HHHhhccEEEEEeCCEE
Q 006275 585 AIS----EYKGTVITVSH---------D--RY--------FVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 585 ~l~----~~~~tvi~vsH---------d--~~--------~i~~~~drvi~l~~g~i 618 (652)
.|+ +++.+||+++| | .. .+.+.||.|++|+.+..
T Consensus 345 ~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 345 SLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 343 45679999999 3 22 57788999999986543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.8e-10 Score=106.94 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=36.8
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC----------CceEEEEeccCcc
Q 006275 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----------NMKIAFLSQEFEV 172 (652)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~----------~~~i~~v~Q~~~~ 172 (652)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+. ...++|++|++..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETR 62 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHH
Confidence 57788999999999999999999999999974 2333321 1246788887543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-08 Score=106.99 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=47.6
Q ss_pred HHHHHHHHHccC--CCeEEEeCCCCCC----------CH----HH---HHHHHH---HHccCCCeEEEEecCHH------
Q 006275 266 MRMSLGKILLQD--PDLLLLDEPTNHL----------DL----DT---IEWLEG---YLGKQDVPMVIISHDRA------ 317 (652)
Q Consensus 266 qRv~LAraL~~~--p~iLLLDEPts~L----------D~----~~---~~~l~~---~L~~~g~tvIivsHd~~------ 317 (652)
+-+.++++++.+ |+++++|+|++.+ |. .. .+.+.+ ++++.++|||+++|...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678878754 9999999999998 32 11 222332 34667999999999654
Q ss_pred ----------HHHhhcCeEEEEcCCeE
Q 006275 318 ----------FLDQLCTKIVETEMGVS 334 (652)
Q Consensus 318 ----------~l~~~~d~ii~l~~G~~ 334 (652)
.+..+||.++.++.+..
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEeee
Confidence 25678998888876654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-08 Score=98.49 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=32.4
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q 006275 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588 (652)
Q Consensus 551 rv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 588 (652)
.+.+|++++.+|+++++| ||++|..+...+.+.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999888754
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.67 E-value=5.2e-10 Score=111.57 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=42.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~ 158 (652)
.|+++|+...|+. +|++.+ ++++|+||||||||||+++|+|++.|++|.|.++|
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 4788888766532 466666 89999999999999999999999999999988765
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-09 Score=112.52 Aligned_cols=102 Identities=16% Similarity=0.028 Sum_probs=54.4
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---Cceecc---------cceecccccccCC--CCCCHHHHHH
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVL---------PNYFEQNQAEALD--LDKTVLETVA 512 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~---~g~~~~---------~~~~~~~~~~~~~--~~~tv~e~~~ 512 (652)
+.+|++++|+||||+|||||+++|+|+.+|..|.|.+ .|..+. .+++.|.+....+ ..+++ +++.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHH
Confidence 3479999999999999999999999999999999988 665432 2344443221111 15678 8873
Q ss_pred Hhhh-----------------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHH
Q 006275 513 EAAE-----------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKA 550 (652)
Q Consensus 513 ~~~~-----------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrq 550 (652)
.... ......+.++++.+++... ..+....|+.|++|
T Consensus 249 ~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~-r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 249 YTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY-RYDHYVEFMTEIKD 302 (307)
T ss_dssp GGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH-HHHHHHHHHHHHhh
Confidence 2111 0112357889999998643 33444556667776
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-11 Score=125.97 Aligned_cols=130 Identities=14% Similarity=0.184 Sum_probs=84.6
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccc----------eec
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN----------YFE 494 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~----------~~~ 494 (652)
.+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++... ++.
T Consensus 50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 45567777787778899999999999 99999999999999999999985 68888877554211 111
Q ss_pred ccccccCCCCCCHHHHHHHhhhhcc------HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 495 QNQAEALDLDKTVLETVAEAAEDWR------IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~~~------~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
+.. ....+...+.|++........ ..+.... .++.+.+|||||+||+.+++|+..+|++ ||
T Consensus 126 ~~~-~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~----------~~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 126 ETA-KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT----------LNQLLVEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp HHH-HTSCSEEEEEETHHHHHCC--------CHHHHHH----------HHHHHHHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred HHH-HhcCCcEEehhhhHhhhcccccccCCcchHHHHH----------HHHHHHHHhCCCCCCCEEEEEecCCchh--CC
Confidence 111 011223344444422111000 0111111 1223346999999999999999999987 67
Q ss_pred CCC
Q 006275 569 EPT 571 (652)
Q Consensus 569 EPt 571 (652)
++.
T Consensus 193 ~~l 195 (278)
T 1iy2_A 193 PAL 195 (278)
T ss_dssp HHH
T ss_pred HhH
Confidence 653
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.62 E-value=8.1e-09 Score=102.90 Aligned_cols=40 Identities=20% Similarity=0.112 Sum_probs=23.3
Q ss_pred eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHH-cCCCC
Q 006275 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA-GQEEP 149 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~-G~~~p 149 (652)
.+..+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 34678999999999999999999999999999999 99843
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-11 Score=123.55 Aligned_cols=131 Identities=14% Similarity=0.195 Sum_probs=84.3
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccce----------ec
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNY----------FE 494 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~----------~~ 494 (652)
.+++++.+.|+...+++++++++++| +.|+||||||||||+++|++... .|.+.+++.++...+ +.
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 101 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 101 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHH
Confidence 45667777777777899999999999 99999999999999999999885 688888775542111 11
Q ss_pred ccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
+.. ....+...+.|++....... ...+..+. .++....|||||+||+.+++|+..+|++ ||
T Consensus 102 ~~~-~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~----------~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld 168 (254)
T 1ixz_A 102 ETA-KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT----------LNQLLVEMDGFEKDTAIVVMAATNRPDI--LD 168 (254)
T ss_dssp HHH-TTSSSEEEEEETHHHHHC---------CHHHHHH----------HHHHHHHHHTCCTTCCEEEEEEESCGGG--SC
T ss_pred HHH-HhcCCeEEEehhhhhhhcccCccccccchHHHHH----------HHHHHHHHhCCCCCCCEEEEEccCCchh--CC
Confidence 111 01122233334442211100 00011111 1223346899999999999999999987 68
Q ss_pred CCCC
Q 006275 569 EPTN 572 (652)
Q Consensus 569 EPt~ 572 (652)
++.-
T Consensus 169 ~~l~ 172 (254)
T 1ixz_A 169 PALL 172 (254)
T ss_dssp GGGG
T ss_pred HHHc
Confidence 7654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.60 E-value=8.7e-10 Score=109.96 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=43.9
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
.|+++|+...|+. +++|.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 3889998776642 566777 89999999999999999999999999999999988765
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.6e-08 Score=106.96 Aligned_cols=177 Identities=15% Similarity=0.109 Sum_probs=100.9
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHHHHHHhhHHHH
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~ 190 (652)
+.|+++..-+++|+++.|.|++|+|||||+..|++...+..| ..+.|++-+. +..+-.........
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--------~~Vl~~s~E~------s~~~l~~r~~~~~~ 256 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--------ENVAIFSLEM------SAQQLVMRMLCAEG 256 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--------CCEEEEESSS------CHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--------CcEEEEECCC------CHHHHHHHHHHHHc
Confidence 467888777999999999999999999999999987654333 1355555432 22211100000000
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHH
Q 006275 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (652)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~L 270 (652)
.. ..+.+ ... .+... ...++.+.+..++..+-..+. ...+|.++.+ +.
T Consensus 257 ~~--~~~~l----~~g----------------------~l~~~-~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~i~--~~ 304 (454)
T 2r6a_A 257 NI--NAQNL----RTG----------------------KLTPE-DWGKLTMAMGSLSNAGIYIDD-TPSIRVSDIR--AK 304 (454)
T ss_dssp TC--CHHHH----HTS----------------------CCCHH-HHHHHHHHHHHHHSSCEEEEC-CTTCCHHHHH--HH
T ss_pred CC--CHHHH----hcC----------------------CCCHH-HHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHH--HH
Confidence 00 00000 000 00000 011222333333222112222 4678999887 55
Q ss_pred HHHHc--cCCCeEEEeCCCCCCCH--------HHHHHHHHHH----ccCCCeEEEEec---------C--HH--------
Q 006275 271 GKILL--QDPDLLLLDEPTNHLDL--------DTIEWLEGYL----GKQDVPMVIISH---------D--RA-------- 317 (652)
Q Consensus 271 AraL~--~~p~iLLLDEPts~LD~--------~~~~~l~~~L----~~~g~tvIivsH---------d--~~-------- 317 (652)
++.+. .+|+++++|+++...+. .....+.+.| ++.+++||+++| + +.
T Consensus 305 ~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg 384 (454)
T 2r6a_A 305 CRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESG 384 (454)
T ss_dssp HHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTC
T ss_pred HHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccc
Confidence 66665 68999999999998853 1223333333 456999999999 2 22
Q ss_pred HHHhhcCeEEEEcCCe
Q 006275 318 FLDQLCTKIVETEMGV 333 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~ 333 (652)
.+.+.||.|+.|..+.
T Consensus 385 ~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 385 SIEQDADIVAFLYRDD 400 (454)
T ss_dssp SHHHHCSEEEEEEETT
T ss_pred hhHhhCCEEEEEeccc
Confidence 4677899999997664
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.3e-08 Score=94.47 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=31.5
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q 006275 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (652)
Q Consensus 267 Rv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (652)
.+.+|++++.+|+++++| ||+||...+..+++.|.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL 187 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence 467899999999999999 99999999999988764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-08 Score=102.07 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=23.3
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHh-CCCCC
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-GLEKP 476 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~-g~~~p 476 (652)
...+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4578999999999999999999999999999999 99844
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=99.24 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=80.5
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-ECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHH
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~ 524 (652)
-+++|+++.|.||+|||||||+..++.......|.+. ++... .. ...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~------------~~----~~~---------------- 104 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH------------AL----DPE---------------- 104 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC------------CC----CHH----------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC------------Cc----CHH----------------
Confidence 4789999999999999999998888755433333332 22110 00 000
Q ss_pred HHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccC--CCeEEEeCCCCCC----------CH---HH----HHHHHHH
Q 006275 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP--STLLVLDEPTNHL----------DI---PS----KEMLEEA 585 (652)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~--p~lLlLDEPt~~L----------D~---~~----~~~l~~~ 585 (652)
...++|+..+... .....+. .+-+.++++++.+ |+++|+|||++.+ |. .. .+.+.++
T Consensus 105 -~a~~lG~~~~~l~-i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L 180 (349)
T 2zr9_A 105 -YAKKLGVDTDSLL-VSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 180 (349)
T ss_dssp -HHHHTTCCGGGCE-EECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHH
T ss_pred -HHHHcCCCHHHeE-EecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHH
Confidence 0112232211000 0011233 3345677877754 9999999999998 32 11 1222222
Q ss_pred ---HHhcCceEEEEecCHH----------------HHHhhccEEEEEeCCEEE
Q 006275 586 ---ISEYKGTVITVSHDRY----------------FVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 586 ---l~~~~~tvi~vsHd~~----------------~i~~~~drvi~l~~g~i~ 619 (652)
+++.+.|||+++|-.. .+..+||.++.++.+++.
T Consensus 181 ~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 181 TGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred HHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 3456779999999654 256789999999876554
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.4e-09 Score=105.82 Aligned_cols=52 Identities=31% Similarity=0.407 Sum_probs=36.2
Q ss_pred CceEEEeE-EEEe-CCeeeeeeeeEEEEC---CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 96 SGVKLENI-SKSY-KGVTVLKDVTWEVKK---GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 96 ~~i~v~~l-s~~y-~~~~vL~~vsl~i~~---Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+.|+++|+ +|+| ++.++|+++||+|.+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46999999 9999 677899999999999 9999999999999999999999854
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-05 Score=99.58 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=26.5
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+++|+.+.|.||+|+|||||+..++....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 89999999999999999999999877653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-08 Score=116.27 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=97.0
Q ss_pred eeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCe-eEEEECceeccc-----ceecccccc---
Q 006275 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-GEVLLGEHNVLP-----NYFEQNQAE--- 499 (652)
Q Consensus 429 ~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~-G~i~~~g~~~~~-----~~~~~~~~~--- 499 (652)
+++.-|+...+++++++.+.+|+.+.|+||||+|||||+++|++++++.. |.+.+.+.+... .++++....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~ 118 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIV 118 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHH
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHH
Confidence 44555777889999999999999999999999999999999999998887 777776543211 111110000
Q ss_pred -----------------cCCCCCCHHHHHHHhhh--------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHH
Q 006275 500 -----------------ALDLDKTVLETVAEAAE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 500 -----------------~~~~~~tv~e~~~~~~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~L 554 (652)
......++.+|+..... .........+++.+... ......+|+|++|++..
T Consensus 119 e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~----~~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 119 EKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD----PFQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC----CC----CCCCGGGGEEC
T ss_pred HHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec----hhhcCCccccccccccC
Confidence 00000000000000000 00000112222222111 12225699999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 588 (652)
++....++.+|+|||... |++.....|.++|++
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899999999999974
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.6e-09 Score=104.34 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=36.4
Q ss_pred cEEEEEee-eeEe-CCeeeeeceEEEEEc---CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 423 SVVTIKNL-EFGY-EDRLLFNRANLTIER---GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 423 ~~i~~~~v-~~~y-~~~~vl~~isl~i~~---Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++++++|+ +++| ++..+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999 9999 777899999999999 9999999999999999999999865
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-07 Score=90.45 Aligned_cols=60 Identities=25% Similarity=0.200 Sum_probs=46.5
Q ss_pred eee--eeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE---------EECC-------CCceEEEEeccCc
Q 006275 111 TVL--KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK-------SNMKIAFLSQEFE 171 (652)
Q Consensus 111 ~vL--~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i---------~~~~-------~~~~i~~v~Q~~~ 171 (652)
..+ +++++++.+| +++|+||||||||||+++|.+.+.+..|.. ...+ ....|.+++|++.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 345 6889999999 999999999999999999999888766532 1121 2246888888863
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.8e-08 Score=94.16 Aligned_cols=126 Identities=18% Similarity=0.190 Sum_probs=76.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~ 531 (652)
+++|+|+|||||||+.+.|+++ |...++...+. ... ..+. ...+.++...+|
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~----~~~----~~~~---------------~~~~~~i~~~~g 55 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVA----REV----VAKD---------------SPLLSKIVEHFG 55 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHH----HHT----TCSS---------------CHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHH----HHH----ccCC---------------hHHHHHHHHHhC
Confidence 6899999999999999999984 44444432211 000 0000 011233344444
Q ss_pred CChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-CceEEEEecCHHHH--Hhhcc
Q 006275 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-KGTVITVSHDRYFV--KQIVN 608 (652)
Q Consensus 532 l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vsHd~~~i--~~~~d 608 (652)
.. . -.+.|+.+|..+++.+..+|+.+..+ .+.+++..+..+.+.+... +.+||+.+|.+.+. ...||
T Consensus 56 ~~--~------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d 125 (206)
T 1jjv_A 56 AQ--I------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCD 125 (206)
T ss_dssp TT--C------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCS
T ss_pred HH--H------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCC
Confidence 31 1 14678999999999888887654333 3456677777777777654 34788888988765 67799
Q ss_pred EEEEEeC
Q 006275 609 RVVEVKG 615 (652)
Q Consensus 609 rvi~l~~ 615 (652)
++++++.
T Consensus 126 ~vi~l~~ 132 (206)
T 1jjv_A 126 RILVVDV 132 (206)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999974
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.44 E-value=9.6e-10 Score=117.79 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=78.5
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE-Ccee----cccceecccccccCCCCCCHHHHHH
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHN----VLPNYFEQNQAEALDLDKTVLETVA 512 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~-~g~~----~~~~~~~~~~~~~~~~~~tv~e~~~ 512 (652)
.+++++++++++|++++|+||||||||||+++|+|. .+|.+.. .... ...+.++|... .+..+.+....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~-~l~dd~~~~~~~~ 232 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFL-VVFEDVKGTGGES 232 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSC-EEETTCCCSTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhH-HHHHHHHHHHHHH
Confidence 579999999999999999999999999999999985 4677665 2110 01111122110 0000000000000
Q ss_pred Hhh--hhc--cHHHHHHHHh---------------hCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE-EeCCCC
Q 006275 513 EAA--EDW--RIDDIKGLLG---------------RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV-LDEPTN 572 (652)
Q Consensus 513 ~~~--~~~--~~~~~~~~L~---------------~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl-LDEPt~ 572 (652)
... ... ....+...++ ..-+.....+.....+++|+++|+..+++++..|++++ ||+|+.
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 000 000 0011222232 11122234567778899999999999888899999998 999987
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-07 Score=92.15 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=30.4
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q 006275 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588 (652)
Q Consensus 552 v~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 588 (652)
...|++++.+|+++++| ||++|..+...+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 35689999999999999 999999999988887754
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.1e-08 Score=93.22 Aligned_cols=40 Identities=18% Similarity=0.370 Sum_probs=30.9
Q ss_pred EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee
Q 006275 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (652)
Q Consensus 444 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (652)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~ 40 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISH 40 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEecee
Confidence 57888999999999999999999999999974 45555543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-07 Score=100.44 Aligned_cols=133 Identities=15% Similarity=0.236 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-----------CCeeEEEECceecc----cceecccccccCCCCCCHHHHHHHh--
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEK-----------PRGGEVLLGEHNVL----PNYFEQNQAEALDLDKTVLETVAEA-- 514 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~-----------p~~G~i~~~g~~~~----~~~~~~~~~~~~~~~~tv~e~~~~~-- 514 (652)
+++|+|++|||||||++.|+|... |..|.|.++|.++. +++..+.+........+..+.+..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 389999999999999999999875 67789999886542 2322211000000000011111100
Q ss_pred ----h--hhcc------HHHHHHHHhhCCCChh---hhccCcCCCCHHHHHHHHHH----HHH-ccCCCeEEEeCCCCCC
Q 006275 515 ----A--EDWR------IDDIKGLLGRCNFKAD---MLDRKVSLLSGGEKARLAFC----KFM-VKPSTLLVLDEPTNHL 574 (652)
Q Consensus 515 ----~--~~~~------~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqrqrv~LA----ral-~~~p~lLlLDEPt~~L 574 (652)
. .... ...+.+.+..++.... ....++..+|+|+++++.++ +++ ..+|++ +|+|++
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~ 336 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISAL 336 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTT
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECC
Confidence 0 0000 1123456666554211 11355677898988888877 665 444454 899999
Q ss_pred CHHHHHHHHHHHHh
Q 006275 575 DIPSKEMLEEAISE 588 (652)
Q Consensus 575 D~~~~~~l~~~l~~ 588 (652)
|..+...+.+.|.+
T Consensus 337 ~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 337 KRTNLELLRDKIYQ 350 (364)
T ss_dssp TTBSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 99999999888765
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.2e-07 Score=96.71 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=46.7
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEe-CCCCCCCHHHHHHHHHHHcc-C-CCeEEEEe--cCHH
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLD-EPTNHLDLDTIEWLEGYLGK-Q-DVPMVIIS--HDRA 317 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLD-EPts~LD~~~~~~l~~~L~~-~-g~tvIivs--Hd~~ 317 (652)
.+...+|+|++|++. +.+...++-++++| +|.+++|......+...+.+ . ++++|+|. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 456789999998876 55556777789999 99999999886655544432 2 78899988 8864
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-07 Score=87.81 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=35.1
Q ss_pred eceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q 006275 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (652)
Q Consensus 441 ~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (652)
+++++++.+| +++|+||||||||||+++|.+++.+..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 6889999999 99999999999999999999988776553
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.2e-07 Score=96.45 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=31.2
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i 154 (652)
=+++|+++.|+||+|||||||+..+++...+..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998876655543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.5e-07 Score=100.75 Aligned_cols=112 Identities=19% Similarity=0.311 Sum_probs=71.7
Q ss_pred eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhc
Q 006275 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518 (652)
Q Consensus 439 vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~ 518 (652)
.++++++.+++| +.|+||+|+|||||+++|++.... + ++..+.. .+.
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------~----f~~is~~-~~~---------------- 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------P----FFHISGS-DFV---------------- 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------C----EEEEEGG-GTT----------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------C----eeeCCHH-HHH----------------
Confidence 455556666666 889999999999999999985311 1 1111100 000
Q ss_pred cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC----------CCCCCHHHHHHHHHHHHh
Q 006275 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP----------TNHLDIPSKEMLEEAISE 588 (652)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP----------t~~LD~~~~~~l~~~l~~ 588 (652)
...+ =.+++++|..+++|....|.||++||+ +++.|....+.+.+++..
T Consensus 87 -------------------~~~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ 145 (476)
T 2ce7_A 87 -------------------ELFV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE 145 (476)
T ss_dssp -------------------TCCT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHH
T ss_pred -------------------HHHh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHH
Confidence 0000 026788888999999999999999999 346777766666666643
Q ss_pred c-------CceEEEEecCHHHHH
Q 006275 589 Y-------KGTVITVSHDRYFVK 604 (652)
Q Consensus 589 ~-------~~tvi~vsHd~~~i~ 604 (652)
+ +..||.+||+.+.+.
T Consensus 146 ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 146 MDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhccCCCCCEEEEEecCChhhhc
Confidence 2 237899999986553
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.3e-07 Score=88.57 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q 006275 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (652)
Q Consensus 268 v~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (652)
...|++++.+|+++++| ||++|......+++.|.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 45689999999999999 99999999888877653
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.9e-07 Score=89.69 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc-CCCeEEEEecCHHHH--HhhcCeEEEEcC
Q 006275 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVIISHDRAFL--DQLCTKIVETEM 331 (652)
Q Consensus 260 LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~-~g~tvIivsHd~~~l--~~~~d~ii~l~~ 331 (652)
.+.|+.+|..+++.+..+|+.+..+ .+.++|..+..+.+.+.. .+.++|+.+|.+... ...||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999998888754333 345667777777666643 356788888987665 577999988863
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.3e-08 Score=95.40 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=30.8
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC
Q 006275 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (652)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~ 159 (652)
.+..++|++++|+|+||||||||+++|+|.+ |.+.+++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d 61 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEAD 61 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccc
Confidence 3567899999999999999999999999976 77877654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-08 Score=115.58 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=56.8
Q ss_pred ccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHHHhc-C--ceEEE-EecCHHHHHhhccEE
Q 006275 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN-HLDIPSKEMLEEAISEY-K--GTVIT-VSHDRYFVKQIVNRV 610 (652)
Q Consensus 538 ~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~~~-~--~tvi~-vsHd~~~i~~~~drv 610 (652)
+..+.-+|+|+.+|..++++++.+++++|+|||.. +||......+...+... . .+|++ +||+.+.+.++++..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 34566789999999999999999999999999996 99987765555544433 2 36666 599998888877643
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-07 Score=100.89 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCC----------CCCCCHHHHHHHHHHHc-------cCCCeEEEEecCHHHHH
Q 006275 262 SGWQMRMSLGKILLQDPDLLLLDEP----------TNHLDLDTIEWLEGYLG-------KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 262 GGqkqRv~LAraL~~~p~iLLLDEP----------ts~LD~~~~~~l~~~L~-------~~g~tvIivsHd~~~l~ 320 (652)
|++++|..+++|....|.||++||+ +++.|....+.+..+|. ..+..||.+||+.+.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 6788899999999999999999999 34667665555554442 24678899999987664
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-08 Score=96.96 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=45.9
Q ss_pred EeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE--EECceec
Q 006275 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV--LLGEHNV 488 (652)
Q Consensus 428 ~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i--~~~g~~~ 488 (652)
+|++..++.....+..++..++|++++|+||||||||||+++|++.+. ..|.+ .+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 356666666667778888889999999999999999999999999987 67887 7887654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-07 Score=91.17 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=39.7
Q ss_pred HHH-HHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006275 270 LGK-ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (652)
Q Consensus 270 LAr-aL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~ 331 (652)
.|+ +++.+|++++|||+|+++|.++.+.+.+.|.+...- +.++|.. ..+|+|++.++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKEP----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGST----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhcc----CCceEEEECCC
Confidence 456 788899999999999999998888877665421111 2334521 56899987763
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=93.35 Aligned_cols=122 Identities=19% Similarity=0.181 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRC 530 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~ 530 (652)
-+++|+|++|+|||||++.|+|.. +..|.............+.... . . ..+++-.
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~-~-----------------~------~~l~Dt~ 222 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGY-F-----------------R------YQIIDTP 222 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETT-E-----------------E------EEEEECT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecC-c-----------------e------EEEEeCC
Confidence 368999999999999999999876 2211110000000000000000 0 0 0011112
Q ss_pred CCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe-CCCCCCCHHHHHHHHHHHHh-c-CceEEEEe--cCHHH
Q 006275 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD-EPTNHLDIPSKEMLEEAISE-Y-KGTVITVS--HDRYF 602 (652)
Q Consensus 531 ~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD-EPt~~LD~~~~~~l~~~l~~-~-~~tvi~vs--Hd~~~ 602 (652)
| ..+.++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.+ . +..+|+|. ||+..
T Consensus 223 G----~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 223 G----LLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp T----TSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred C----ccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 2 234566789999998876 66666788899999 99999999987776666654 3 46788888 88743
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.6e-07 Score=105.23 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=55.4
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHH-c--cCCCeEEE-EecCHHHHHhhcCe
Q 006275 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTIEWLEGYL-G--KQDVPMVI-ISHDRAFLDQLCTK 325 (652)
Q Consensus 254 ~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts-~LD~~~~~~l~~~L-~--~~g~tvIi-vsHd~~~l~~~~d~ 325 (652)
+..+.-+|+|+.+|..++++++.+++++|+|||.. +||......+...+ . ....+|++ +||+.+.+..+++.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 34467889999999999999999999999999997 99987654444333 2 22456666 49999888877764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=5.1e-08 Score=94.92 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=43.3
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE--EECC
Q 006275 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--IKAK 158 (652)
Q Consensus 101 ~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i--~~~~ 158 (652)
+|++..++.....+..++..++|++++|+|+||||||||+++|++.+. ..|.+ .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 466666777777788888889999999999999999999999999987 67876 5553
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.4e-07 Score=86.87 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=29.8
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Q 006275 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (652)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G 152 (652)
++|++|++++|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.18 E-value=7.8e-07 Score=86.22 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=30.1
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (652)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=85.08 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=36.9
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcc------CCCeEEEEecCHHHHHhhc
Q 006275 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK------QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~------~g~tvIivsHd~~~l~~~~ 323 (652)
.+|.+|+|||+... |......|..++.+ .+.++|+++|+.++...+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 45889999999876 98888888887743 4778999999987655443
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.7e-06 Score=90.73 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=40.6
Q ss_pred HHHHhhhcCCCccc---ccCCCCCCChHHHHHHHHH----HHH-ccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q 006275 239 VSKLMPELGFTADD---GDRLVASFSSGWQMRMSLG----KIL-LQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (652)
Q Consensus 239 i~~ll~~lgl~~~~---~~~~~~~LSGGqkqRv~LA----raL-~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (652)
+.+++..+++.... ...++..+|+|+++|+.++ +++ ..+|++ +|+|++|......|.+.|.
T Consensus 281 ~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 281 SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIY 349 (364)
T ss_dssp HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHH
Confidence 34556666543211 1223567898999988877 666 444554 8999999999888877664
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.7e-07 Score=93.32 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=33.6
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHh---CCCCCCeeEEE
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVL 482 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~---g~~~p~~G~i~ 482 (652)
++|++++|+|||||||||++++|+ |+..|++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999987
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=8.8e-06 Score=89.41 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006275 263 GWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (652)
Q Consensus 263 GqkqRv~LAraL~~~p~iLLLDEPts-~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (652)
.+.+....+...+.+++++|+..... ++.. ...++.++|++.++.+|+|.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~-~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTA-ADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCH-HHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh-HHHHHHHHHHHcCCCEEEEEECccch
Confidence 47777788888888999777765544 4444 44678888888889999998877654
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-06 Score=85.62 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=32.7
Q ss_pred EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 444 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
.++.++|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 3667899999999999999999999999987 8888887654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.7e-07 Score=90.95 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=34.0
Q ss_pred eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHH---cCCCCCCcEEE
Q 006275 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVI 155 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~---G~~~p~~G~i~ 155 (652)
..++++.+ ++|++++|+|||||||||++++|+ |+..+++|.+.
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 33444443 789999999999999999999999 99999999887
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.3e-06 Score=86.79 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH-HHccC-CCeEEEEec
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLGKQ-DVPMVIISH 314 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~-~L~~~-g~tvIivsH 314 (652)
..||.++.+|+..|...+.+++++|.|+|.. .+.......+ +.++. +..+|+|.|
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~--si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYV--RIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTC--CHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCC--cHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4699999999999999999999999999864 4444433333 33445 678888764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-06 Score=82.95 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=29.1
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCC-CCcEEE
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVI 155 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-~~G~i~ 155 (652)
+|++++|+||||||||||+++|++.+++ ..|.|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 6899999999999999999999999874 445543
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.3e-06 Score=83.01 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=24.8
Q ss_pred eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
..+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35899999999999999999999999999999999765
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-05 Score=84.46 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=33.3
Q ss_pred eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHc--CCCCCCcEEE
Q 006275 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVI 155 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G--~~~p~~G~i~ 155 (652)
..+|++++++++ .++|||++|||||||++.|+| ++++.+|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 357889999998 899999999999999999999 5677777654
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.9e-06 Score=82.25 Aligned_cols=34 Identities=9% Similarity=0.213 Sum_probs=29.4
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEE
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVL 482 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~ 482 (652)
+|++++|+||||||||||+++|++.+++ ..|.|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 6899999999999999999999999874 455554
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.98 E-value=8.3e-06 Score=86.48 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.8
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
-|++|+++.|+||+|||||||+..+++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998877666655
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.7e-06 Score=82.54 Aligned_cols=38 Identities=21% Similarity=0.099 Sum_probs=24.8
Q ss_pred eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 437 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
...++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46799999999999999999999999999999999765
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=4.4e-06 Score=88.90 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=34.0
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhC--CCCCCeeEEEEC
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVLLG 484 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g--~~~p~~G~i~~~ 484 (652)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 57888999988 899999999999999999999 667777766533
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.97 E-value=2e-05 Score=83.71 Aligned_cols=122 Identities=18% Similarity=0.188 Sum_probs=70.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCe--eEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhh
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR 529 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~--G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~ 529 (652)
.+.|+||+|+|||||++.+++...+.. ..+.++.. ...+..+. +..++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~----------------~~~~~~~~------------~~~l~~~ 97 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF----------------IYRNFTAI------------IGEIARS 97 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT----------------TCCSHHHH------------HHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc----------------cCCCHHHH------------HHHHHHH
Confidence 799999999999999999999887653 12222110 00111111 1222233
Q ss_pred CCCChhhhccCcCCCCHHHHHHHHHHHH-HccCCCeEEEeCCCCCCCHHHHHHHHHHHHh------cCceEEEEecCHHH
Q 006275 530 CNFKADMLDRKVSLLSGGEKARLAFCKF-MVKPSTLLVLDEPTNHLDIPSKEMLEEAISE------YKGTVITVSHDRYF 602 (652)
Q Consensus 530 ~~l~~~~~~~~~~~LSgGqrqrv~LAra-l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tvi~vsHd~~~ 602 (652)
++.. .+....+.++......... -..+|.+|+|||+... |......|..++.+ .+.++|++||+.++
T Consensus 98 l~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 98 LNIP-----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TTCC-----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred hCcc-----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 3321 1111233333222211111 1245889999999876 88888888888754 24589999999876
Q ss_pred HHhhc
Q 006275 603 VKQIV 607 (652)
Q Consensus 603 i~~~~ 607 (652)
...+.
T Consensus 172 ~~~l~ 176 (389)
T 1fnn_A 172 LNNLD 176 (389)
T ss_dssp HHTSC
T ss_pred HHHhC
Confidence 55443
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.95 E-value=1.2e-06 Score=91.83 Aligned_cols=45 Identities=31% Similarity=0.304 Sum_probs=41.0
Q ss_pred eeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
+++++|++++|++++|+|+||+||||++..|++.+.+..|+|.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468899999999999999999999999999999999988988874
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.92 E-value=3e-07 Score=96.23 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=42.3
Q ss_pred eeeEeCCeeeeeceEEEEEcCe------EEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEEE
Q 006275 430 LEFGYEDRLLFNRANLTIERGE------KTAIIGPNGCGKSTLLKLIMGLEK--PRGGEVLL 483 (652)
Q Consensus 430 v~~~y~~~~vl~~isl~i~~Ge------~~~i~G~NGsGKSTLl~~l~g~~~--p~~G~i~~ 483 (652)
+++.|++...|++++..|..++ ++||+||||||||||+++|.+++. |.+|.+.+
T Consensus 66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 4455666666777777777666 999999999999999999999987 56676544
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.3e-07 Score=93.56 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=45.6
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 99 ~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
+++++.+.|+...+++++++++++| ++|+||||||||||+++|+|... .|.|.++
T Consensus 27 ~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 4456666666667899999999999 99999999999999999999875 5666654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.8e-05 Score=83.33 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=66.1
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhcc
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR 519 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~ 519 (652)
|+.+.--+++|+.+.|.|++|+|||||+..++.......+.|. |+. ..++..+.+..
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl---------~fS--------lEms~~ql~~R------ 92 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA---------VFS--------LEMSAEQLALR------ 92 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE---------EEE--------SSSCHHHHHHH------
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE---------EEe--------CCCCHHHHHHH------
Confidence 4444445889999999999999999999888765422222221 222 12232222211
Q ss_pred HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q 006275 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (652)
Q Consensus 520 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD 575 (652)
+......+++ ..+.+ ..||.++.+|+..|...+.+++++|.|+|...++
T Consensus 93 ---lls~~~~v~~-~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 93 ---ALSDLTSINM-HDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ---HHHHHHCCCH-HHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ---HHHHhhCCCH-HHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1111222221 11111 3699999999999999999999999999875543
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.5e-08 Score=106.77 Aligned_cols=131 Identities=14% Similarity=0.186 Sum_probs=81.4
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccccee----------c
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF----------E 494 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~----------~ 494 (652)
.+++++...|....+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++...+. .
T Consensus 41 ~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lf 116 (499)
T 2dhr_A 41 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 116 (499)
T ss_dssp HHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHT
T ss_pred HHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHH
Confidence 44556655566667889999999999 99999999999999999999875 6788888765432111 1
Q ss_pred ccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
+.. ....+...+.|++....... ..++....+. +....||||++|+..+++|...+|++ ||
T Consensus 117 q~a-~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~----------~LL~~Ldg~~~~~~viviAatn~p~~--LD 183 (499)
T 2dhr_A 117 ETA-KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN----------QLLVEMDGFEKDTAIVVMAATNRPDI--LD 183 (499)
T ss_dssp TTS-SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH----------HHHHHGGGCCSSCCCEEEECCSCGGG--SC
T ss_pred HHH-HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH----------HHHHHhcccccCccEEEEEecCChhh--cC
Confidence 110 00111222233332111000 0111111111 12234889999999999999999988 89
Q ss_pred CCCC
Q 006275 569 EPTN 572 (652)
Q Consensus 569 EPt~ 572 (652)
||.-
T Consensus 184 ~aLl 187 (499)
T 2dhr_A 184 PALL 187 (499)
T ss_dssp TTTS
T ss_pred cccc
Confidence 9875
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.89 E-value=2.8e-07 Score=94.44 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=46.1
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 99 ~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.++
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~ 105 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 105 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence 3456666676667899999999999 99999999999999999999875 5666654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.8e-07 Score=96.44 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=48.7
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCC------EEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCCCceEEEEeccCc
Q 006275 101 ENISKSYKGVTVLKDVTWEVKKGE------KVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSNMKIAFLSQEFE 171 (652)
Q Consensus 101 ~~ls~~y~~~~vL~~vsl~i~~Ge------~~~lvG~NGsGKSTLl~~L~G~~~p--~~G~i~~~~~~~~i~~v~Q~~~ 171 (652)
+.+++.|++...|++++..+..+. ++||+||||||||||+++|.+++.+ +.| .+++++++..
T Consensus 64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~---------~v~~i~~D~f 133 (321)
T 3tqc_A 64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP---------NVEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC---------CEEEEEGGGG
T ss_pred HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC---------eEEEEeeccc
Confidence 345666777778888888888877 9999999999999999999999873 444 3566667643
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.6e-06 Score=96.79 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=35.2
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006275 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (652)
Q Consensus 273 aL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (652)
+-..+.-++++| |+.++++.++.++.. +++.+.++|++.|.++..
T Consensus 95 l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 95 LEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEECGGGC
T ss_pred HhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecCCchh
Confidence 335688899999 999999998866544 445688999999998854
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.88 E-value=3e-05 Score=84.18 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=66.8
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHh
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~ 528 (652)
++.+++++|+|||||||++..|++.+.+..++|.+-+.+.. + . ...+ ....+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~----r--~--------~a~e------------qL~~~~~ 149 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY----R--P--------AAYD------------QLLQLGN 149 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS----C--H--------HHHH------------HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc----c--h--------hHHH------------HHHHHHH
Confidence 57899999999999999999999999887777766443321 0 0 0111 1122222
Q ss_pred hCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC-CC--CCHHHHHHHHHHHHhc
Q 006275 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT-NH--LDIPSKEMLEEAISEY 589 (652)
Q Consensus 529 ~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt-~~--LD~~~~~~l~~~l~~~ 589 (652)
..+++.. ........-.-.+-+++.+...+++++|+|+|. .+ .|......+..+++..
T Consensus 150 ~~gv~~~---~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 150 QIGVQVY---GEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp TTTCCEE---CCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred hcCCcee---eccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 3333210 000111222222335666666789999999887 45 7777777777665543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.7e-06 Score=83.59 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=33.8
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (652)
.+.++|++++|+|+||||||||+++|+|. +|.|.+.+.+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 34578999999999999999999999998 6888887654
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.85 E-value=3.2e-05 Score=81.70 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=25.8
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998875
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=6.9e-05 Score=78.42 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=25.4
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
-+++|+++.|.||+|||||||...++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999888764
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=5.2e-05 Score=79.41 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=25.8
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
-+++|+++.|.|++|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999988864
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=5.2e-06 Score=82.55 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=31.5
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~ 158 (652)
..++|++++|+|+||||||||+++|+|. .|+|.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 4578999999999999999999999997 67777654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.83 E-value=2.8e-06 Score=82.61 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=35.9
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (652)
.++|++++|+|+||||||||++.|++.+++.+|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 46789999999999999999999999998888888775544
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.82 E-value=9.4e-06 Score=85.92 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=25.8
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPD 150 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~ 150 (652)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999876553
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.81 E-value=9.3e-06 Score=79.38 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=27.5
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999887
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.80 E-value=2.4e-05 Score=84.83 Aligned_cols=151 Identities=15% Similarity=0.036 Sum_probs=84.8
Q ss_pred eeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-ceeccc----ccccC--
Q 006275 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-NYFEQN----QAEAL-- 501 (652)
Q Consensus 429 ~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-~~~~~~----~~~~~-- 501 (652)
++++.|++.. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.++.. ....|- ....+
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 4555665433 567777 899999999999999999999999999988999886655421 111110 00000
Q ss_pred CC---CCCHHHHHHHhhhhccHHHHHHHHhhC---CCChhhhccCcCC--CCHHHHHHHHHHHHHccCCCeEEEeCCCCC
Q 006275 502 DL---DKTVLETVAEAAEDWRIDDIKGLLGRC---NFKADMLDRKVSL--LSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573 (652)
Q Consensus 502 ~~---~~tv~e~~~~~~~~~~~~~~~~~L~~~---~l~~~~~~~~~~~--LSgGqrqrv~LAral~~~p~lLlLDEPt~~ 573 (652)
.+ ..+..+. +.+.++.+ ++.--..|.++.. -..-+.+...+++++..++-+|++|- +.+
T Consensus 157 ~~~~~~~~p~~i------------~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa-~tg 223 (425)
T 2ffh_A 157 LEVMDGESPESI------------RRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA-MTG 223 (425)
T ss_dssp EECCTTCCHHHH------------HHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG-GGT
T ss_pred EecCCCCCHHHH------------HHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEec-cch
Confidence 00 0111110 11222211 2211234554431 12346677778888877777888884 556
Q ss_pred CCHHHHHHHHHHHHhcCceEEEEec
Q 006275 574 LDIPSKEMLEEAISEYKGTVITVSH 598 (652)
Q Consensus 574 LD~~~~~~l~~~l~~~~~tvi~vsH 598 (652)
.|... .+...-...+.+-|++|+
T Consensus 224 q~av~--~a~~f~~~l~i~GVIlTK 246 (425)
T 2ffh_A 224 QEALS--VARAFDEKVGVTGLVLTK 246 (425)
T ss_dssp THHHH--HHHHHHHHTCCCEEEEES
T ss_pred HHHHH--HHHHHHhcCCceEEEEeC
Confidence 54432 222222234556667776
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.79 E-value=2.4e-06 Score=89.46 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=43.0
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
+++++|++++|++++|+|+||+||||++..|++.+.+.+|+|.+.+.++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4678888899999999999999999999999999999889998866553
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1e-05 Score=93.15 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=72.1
Q ss_pred EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEECceecccceecccccccCCCCCCHHHHHHHhhh-hccH
Q 006275 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE-DWRI 520 (652)
Q Consensus 444 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~-~~~~ 520 (652)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|..+.. +............. .... .+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d-~~~~e~~~giti~~-------~~~~~~~~- 72 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTD-YTPEAKLHRTTVRT-------GVAPLLFR- 72 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSC-CSHHHHHTTSCCSC-------EEEEEEET-
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccccc-CCHHHHhcCCeEEe-------cceEEeeC-
Confidence 467789999999999999999999999977654 56766 33332211 00000000000000 0000 000
Q ss_pred HHHHHHHhhCCCChhhhccCcC-CCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC
Q 006275 521 DDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHD 599 (652)
Q Consensus 521 ~~~~~~L~~~~l~~~~~~~~~~-~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd 599 (652)
+..-...|.+.. .++ ......+-..++-++++| |+.+++..+...+.. +.+.+..+|++.|.
T Consensus 73 ----------~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NK 135 (665)
T 2dy1_A 73 ----------GHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTK 135 (665)
T ss_dssp ----------TEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEEC
T ss_pred ----------CEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecC
Confidence 000112222211 011 122233335688899999 999999988865544 44567788899999
Q ss_pred HHHH
Q 006275 600 RYFV 603 (652)
Q Consensus 600 ~~~i 603 (652)
++..
T Consensus 136 iD~~ 139 (665)
T 2dy1_A 136 LDKG 139 (665)
T ss_dssp GGGC
T ss_pred Cchh
Confidence 8853
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.1e-05 Score=78.97 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=29.5
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEE
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEV 481 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-~~G~i 481 (652)
++|++++|+||||||||||++.|++.++| ..+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~ 40 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSI 40 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEE
Confidence 57999999999999999999999999987 33333
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.77 E-value=5e-06 Score=80.84 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=33.6
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
.++|++++|+|+||||||||+++|++.+++..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 56789999999999999999999999988877877653
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.75 E-value=7.5e-06 Score=79.54 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=26.7
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+...+|+.++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445899999999999999999999999875
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.73 E-value=1.1e-05 Score=78.50 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=26.9
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34455899999999999999999999999876
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.73 E-value=3.7e-06 Score=89.93 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=44.8
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE-CCCCc----eEEEEeccC
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-AKSNM----KIAFLSQEF 170 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~-~~~~~----~i~~v~Q~~ 170 (652)
.+++++++.+++|++++|+||||||||||+++|+|. ..|.+.. ..... .+++++|.+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~ 218 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQF 218 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCS
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchh
Confidence 588999999999999999999999999999999995 4677765 21111 355566654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.72 E-value=3.1e-05 Score=80.86 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHH-HHHHHHccCCCe--EEEEec
Q 006275 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVP--MVIISH 314 (652)
Q Consensus 260 LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~-~l~~~L~~~g~t--vIivsH 314 (652)
||+++++|+..|...+.++++++.|+|. ++..... .+..+.++.+.. +|+|.|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 8999999999999999999999999986 4444433 233344455777 888876
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=9.5e-06 Score=76.56 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=31.4
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999875 7777776543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.6e-05 Score=84.19 Aligned_cols=125 Identities=23% Similarity=0.216 Sum_probs=66.8
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee----EEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHH
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG----EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G----~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~ 523 (652)
..+..+.|.||+|+|||||++.+++...+..| .+.++... . .+..+ ..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~----------~------~~~~~------------~~ 94 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ----------I------DTPYR------------VL 94 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH----------H------CSHHH------------HH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC----------C------CCHHH------------HH
Confidence 45778999999999999999999987754322 22222100 0 01111 11
Q ss_pred HHHHhhCCCChhhhccCcCCCCHHHH-HHHHHHHHHccCCCeEEEeCCCCCCC---HHHHHHHHHHHHhc---CceEEEE
Q 006275 524 KGLLGRCNFKADMLDRKVSLLSGGEK-ARLAFCKFMVKPSTLLVLDEPTNHLD---IPSKEMLEEAISEY---KGTVITV 596 (652)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqr-qrv~LAral~~~p~lLlLDEPt~~LD---~~~~~~l~~~l~~~---~~tvi~v 596 (652)
..++..++... +....+..+. +++.-+..-...|.+|++||+.+..+ ......+.+.+... +.++|++
T Consensus 95 ~~i~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~ 169 (386)
T 2qby_A 95 ADLLESLDVKV-----PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI 169 (386)
T ss_dssp HHHTTTTSCCC-----CSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE
T ss_pred HHHHHHhCCCC-----CCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE
Confidence 22233333211 1112334432 22211111123488999999988663 33444555555432 3489999
Q ss_pred ecCHHHHHh
Q 006275 597 SHDRYFVKQ 605 (652)
Q Consensus 597 sHd~~~i~~ 605 (652)
||+.+....
T Consensus 170 ~~~~~~~~~ 178 (386)
T 2qby_A 170 TNDVKFVDL 178 (386)
T ss_dssp ESCGGGGGG
T ss_pred ECCCChHhh
Confidence 998865443
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.68 E-value=5.1e-06 Score=93.20 Aligned_cols=43 Identities=30% Similarity=0.324 Sum_probs=37.8
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEE-ECceec
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVL-LGEHNV 488 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~-~~g~~~ 488 (652)
.+++|++++|+|+||||||||+++|+|.+.|++| .+. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 674 787544
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=77.52 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=25.5
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.66 E-value=5.5e-07 Score=95.28 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=49.0
Q ss_pred EeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECce
Q 006275 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (652)
Q Consensus 428 ~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (652)
+++.+.|+.+.+++++++.+.+|.+++|+|+||+|||||++.|++.+.+..|++.+-+.
T Consensus 34 ~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 34 RHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 34445666667888999999999999999999999999999999998887787766443
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2.2e-05 Score=76.30 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=34.3
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCcc
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~ 172 (652)
++++|.+++|+|++|||||||++.|++.++ .+.+++|+..+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-------------~~~~i~~D~~~ 57 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-------------NCSVISQDDFF 57 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-------------TEEEEEGGGGB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-------------CcEEEeCCccc
Confidence 567899999999999999999999999864 25677777544
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=1.6e-05 Score=74.93 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=28.6
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~ 158 (652)
.+|++++|+|+|||||||++++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 468999999999999999999999864 6666553
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00033 Score=71.75 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=67.7
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHh
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~ 528 (652)
++..+.|.||+|+|||||++++++..... -+.++. . .+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~--~~~i~~------------~-~l--------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSAT--FLNISA------------A-SL--------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCE--EEEEES------------T-TT---------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCC--eEEeeH------------H-HH---------------------------
Confidence 35568999999999999999999865210 011100 0 00
Q ss_pred hCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH----------HHHHHHHHHhcC-------c
Q 006275 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS----------KEMLEEAISEYK-------G 591 (652)
Q Consensus 529 ~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~----------~~~l~~~l~~~~-------~ 591 (652)
....+ -+++++.+..++++...+|.+|++||+.+-++... ...+...+.... .
T Consensus 91 --------~~~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 91 --------TSKYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp --------SSSSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred --------hhccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00001 23577778888888888999999999987765322 223444444432 2
Q ss_pred eEEEEecCHHH----HHhhccEEEEE
Q 006275 592 TVITVSHDRYF----VKQIVNRVVEV 613 (652)
Q Consensus 592 tvi~vsHd~~~----i~~~~drvi~l 613 (652)
.||.+|++.+. +.+-+++++.+
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~ 186 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYV 186 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEEC
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEe
Confidence 57778887532 22235555544
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00018 Score=71.48 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=24.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcE
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~~G~ 153 (652)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 48999999999999999999987766654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.61 E-value=1.1e-05 Score=90.61 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=35.5
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc-EEE-ECC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVI-KAK 158 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G-~i~-~~~ 158 (652)
.+++|++++|+|+||||||||+++|+|.+.|++| .+. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999886 664 554
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.60 E-value=5.8e-07 Score=95.11 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=49.1
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~ 156 (652)
++.++..+.|+...+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+..|+|.+
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 44455566666667889999999999999999999999999999999998877666543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.56 E-value=1.8e-06 Score=89.63 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHc--cCCCeEEEeCCCCCCCHHH-HHHHHHHHHh----cCc--eEEEEecCHHHHHhhccEEE
Q 006275 544 LSGGEKARLAFCKFMV--KPSTLLVLDEPTNHLDIPS-KEMLEEAISE----YKG--TVITVSHDRYFVKQIVNRVV 611 (652)
Q Consensus 544 LSgGqrqrv~LAral~--~~p~lLlLDEPt~~LD~~~-~~~l~~~l~~----~~~--tvi~vsHd~~~i~~~~drvi 611 (652)
+|+|++ .+++++. ..|.++++ |.+|... ...+.+.+.+ ++. .+.+++|+-+-+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 899987 4556665 68999999 8999876 5555555543 332 56677788777777766554
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.54 E-value=2.9e-05 Score=72.86 Aligned_cols=28 Identities=39% Similarity=0.372 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
.|.+++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4688999999999999999999997643
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00019 Score=77.87 Aligned_cols=35 Identities=31% Similarity=0.158 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~ 156 (652)
++.+++++|++||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999988776555543
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0002 Score=73.34 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH----------HHHHHHHHHcc-------CCCeEEEEecCHH
Q 006275 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD----------TIEWLEGYLGK-------QDVPMVIISHDRA 317 (652)
Q Consensus 261 SGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~----------~~~~l~~~L~~-------~g~tvIivsHd~~ 317 (652)
+++++.|..++.+...+|.+|++||+.+.++.. ....+...+.. .+..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 467777888888888899999999998876532 22233333321 2345677888764
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.50 E-value=3.4e-05 Score=72.41 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=25.3
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p 476 (652)
.|++++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999998754
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00028 Score=70.09 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=30.9
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC-----ceEEEEec
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK-----GTVITVSH 598 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-----~tvi~vsH 598 (652)
..+++++|+..+.+.++......+..++..++ .++|+++|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 35789999999998998877777777665432 38888898
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=4.7e-05 Score=70.43 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=24.2
Q ss_pred eeeEEEECCCEEEEECCCCccHHHHHHHHH
Q 006275 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~ 144 (652)
+..+++.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345556665 99999999999999999986
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=9.3e-05 Score=68.44 Aligned_cols=30 Identities=40% Similarity=0.616 Sum_probs=24.1
Q ss_pred ceEEEEEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 442 ~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555544 899999999999999999863
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.45 E-value=1.5e-05 Score=84.63 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=46.6
Q ss_pred EEEEEeeeeEeCC-eeeee--------------ceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 424 VVTIKNLEFGYED-RLLFN--------------RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 424 ~i~~~~v~~~y~~-~~vl~--------------~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
-+.++|+++.|+. +.+|+ |+.+.|.+|++++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4889999999985 56888 899999999999999999999999999999875
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.44 E-value=1.6e-05 Score=84.34 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=47.0
Q ss_pred CceEEEeEEEEeCCe-eeee--------------eeeEEEECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 96 SGVKLENISKSYKGV-TVLK--------------DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~-~vL~--------------~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
..+.++|+++.|+.. .+|+ |+.+.|.+|+.++|+||+|+|||||++.|++.+
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 358899999999864 5888 899999999999999999999999999999865
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00015 Score=75.59 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=27.9
Q ss_pred eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 439 vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
-|+.+.--+++|+.+.|.|++|+|||||+..++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3555444589999999999999999999888764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00086 Score=73.03 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=33.1
Q ss_pred HHHHHHccCCCeEE-EeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006275 269 SLGKILLQDPDLLL-LDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (652)
Q Consensus 269 ~LAraL~~~p~iLL-LDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (652)
..+...+.+++++| +-+.++++.... .++.++|++.++.+|++-...+..
T Consensus 74 ~~~~~~~~~ad~il~vvD~~~~~~~~d-~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 74 QQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHTTCCSCEEEEEECCCC-
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCc
Confidence 34455566677444 556888888664 467778887788888877665543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.35 E-value=6.8e-06 Score=92.35 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=49.1
Q ss_pred EEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECc
Q 006275 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (652)
Q Consensus 426 ~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (652)
-++++...|....++.++++++ +|+.+.|+||||+|||||+++|++...+..|.|.+.+
T Consensus 85 G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 85 GLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred cHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3456666666566788888888 8999999999999999999999999988888886654
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00089 Score=70.94 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.2
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+++|+++.|.|++|+|||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998887543
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=4.8e-05 Score=72.07 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=30.8
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEECce
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEH 486 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~ 486 (652)
++|++++|+|++||||||+.+.|++.+++ .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 47999999999999999999999998755 45 5555553
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=2.8e-05 Score=76.37 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=27.9
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC---CCCCcEEEE
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNVIK 156 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~---~p~~G~i~~ 156 (652)
+.+++|+|++||||||++++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865 456666543
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=8.6e-05 Score=72.05 Aligned_cols=31 Identities=23% Similarity=0.098 Sum_probs=28.0
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
-++++|.+++|+|++|||||||.+.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999874
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.31 E-value=7.7e-05 Score=74.12 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=30.6
Q ss_pred eeeeeEEEE---CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE
Q 006275 113 LKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (652)
Q Consensus 113 L~~vsl~i~---~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~ 155 (652)
|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 555666665 8999999999999999999999999887 55554
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0005 Score=75.04 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=31.4
Q ss_pred cCCCeEEEeCCCCCCCH-HHHHHHHHHHHhc---CceEEEEecCH
Q 006275 560 KPSTLLVLDEPTNHLDI-PSKEMLEEAISEY---KGTVITVSHDR 600 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~-~~~~~l~~~l~~~---~~tvi~vsHd~ 600 (652)
.+|++|++||+..-.+. .+...+...+... +..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 5677777777643 45888899973
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=6.4e-05 Score=71.19 Aligned_cols=31 Identities=35% Similarity=0.370 Sum_probs=26.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G 152 (652)
.+|++++|+|++||||||++++|++.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 47899999999999999999999998755 45
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.25 E-value=8.9e-05 Score=73.68 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=31.4
Q ss_pred eeceEEEEE---cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE
Q 006275 440 FNRANLTIE---RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (652)
Q Consensus 440 l~~isl~i~---~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~ 483 (652)
|.++||++. +|.+++|.|++||||||+++.|+..+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566677766 8999999999999999999999999887 555543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=3.8e-05 Score=75.45 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC---CCCeeEEEE
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE---KPRGGEVLL 483 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~---~p~~G~i~~ 483 (652)
+.+++|+|++||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999998765 566676654
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=7.1e-05 Score=79.23 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=32.5
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECce
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (652)
++.+++|+|++|||||||++.|+|.+.+.+|+|.+.+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 46789999999999999999999988887787766543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=4.8e-05 Score=80.97 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=38.9
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (652)
..+.+.|++..|+.+.++++++|+| +|+|++|+|||||++.|+|...+..|.
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3488999999998888999999987 999999999999999999876554444
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=8.9e-05 Score=78.48 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=31.7
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
+++.+++|+|++|||||||++.|+|.+.+..|+|.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~ 108 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL 108 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEE
Confidence 4567899999999999999999999988877776543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00061 Score=74.36 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=31.1
Q ss_pred cCCCeEEEeCCCCCCCH-HHHHHHHHHH---ccCCCeEEEEecCH
Q 006275 276 QDPDLLLLDEPTNHLDL-DTIEWLEGYL---GKQDVPMVIISHDR 316 (652)
Q Consensus 276 ~~p~iLLLDEPts~LD~-~~~~~l~~~L---~~~g~tvIivsHd~ 316 (652)
.+|++|++||+....+. .+.+.+...+ .+.|+.||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 4556666554 45688999999973
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.19 E-value=7.6e-06 Score=91.93 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=46.7
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
++++.+.|....++.++++++ +|+.++|+||||+|||||+++|++.+.+..|.|.+.
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 455666665555778888888 899999999999999999999999998877776654
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00052 Score=70.82 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=25.6
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+.++..+.|.||+|+|||||.++|++...
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45677899999999999999999998763
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00018 Score=69.96 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=24.2
Q ss_pred eeeEEEECCCEEEEECCCCccHHHHHHHHH
Q 006275 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~ 144 (652)
+.++.+.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445666665 99999999999999999885
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00041 Score=65.04 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=23.6
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++|.+++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999999864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=7.8e-05 Score=72.75 Aligned_cols=42 Identities=24% Similarity=0.147 Sum_probs=36.0
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEECcee
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHN 487 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~~ 487 (652)
.+++|.+++|+|++||||||+.+.|++.+.|..| .+.+++..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3567999999999999999999999999987788 77777543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=3.5e-05 Score=82.03 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=38.5
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~ 153 (652)
..+.+.|++..|+.+.++++++|.| +|+|++|+|||||++.|.|...+..|.
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 4588899999998888899999877 999999999999999999876655544
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.08 E-value=5.2e-05 Score=82.21 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=44.7
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
.+++++.|++.. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 346677776544 678887 899999999999999999999999998887777653
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00044 Score=67.23 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=23.4
Q ss_pred ceEEEEEcCeEEEEEcCCCCcHHHHHHHHh
Q 006275 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (652)
Q Consensus 442 ~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~ 471 (652)
+.++++.+ .+.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34555555 489999999999999999884
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00036 Score=71.79 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.7
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEE
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i 154 (652)
..+.|+||+|+||||++++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4799999999999999999999887666543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00042 Score=66.07 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=20.8
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
.++++++++.+.. +++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3678899988877 789999999999999999997
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.05 E-value=2.4e-05 Score=81.07 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=45.0
Q ss_pred EeeeeEeCCeeeeec-eEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 428 KNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 428 ~~v~~~y~~~~vl~~-isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
+++...|++.. ++ ++++++ |++++++|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34555555432 45 777766 999999999999999999999999988888887765543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=8.4e-05 Score=73.84 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHH-HHHHHHccC-CC-eEEE-EecCHHHHHhhc
Q 006275 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTIE-WLEGYLGKQ-DV-PMVI-ISHDRAFLDQLC 323 (652)
Q Consensus 260 LSGGqkqRv~LAraL~~~p~iLLLDEPts-~LD~~~~~-~l~~~L~~~-g~-tvIi-vsHd~~~l~~~~ 323 (652)
.+.|...+.. ...+.+-+++++||.-. ++|..... .+..++... +. ++++ +|.+.+.+.++.
T Consensus 161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc
Confidence 3557766653 33688999999999976 57776653 444444322 23 3333 355555544443
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=9.5e-05 Score=72.12 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=33.0
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc--EEEEC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKA 157 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G--~i~~~ 157 (652)
.+++|.+++|+|++||||||+++.|++.+.|..| .+.++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 4568899999999999999999999998877677 55554
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0032 Score=66.63 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=24.9
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|+++.|.|++|+|||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988877543
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00015 Score=69.81 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=37.4
Q ss_pred eEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC--------CCCCeeEEEECce
Q 006275 432 FGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGEH 486 (652)
Q Consensus 432 ~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~--------~~p~~G~i~~~g~ 486 (652)
+.|++ ..+++++|++.+++ +++|+|++|+|||||++.+.+- ..++.+.+.+++.
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 34554 36788888888777 5899999999999999999873 2234455666653
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0019 Score=67.17 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.8
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHc
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G 145 (652)
-+++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999998875
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00064 Score=74.10 Aligned_cols=38 Identities=37% Similarity=0.561 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC------------CCeeEEEECceec
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEK------------PRGGEVLLGEHNV 488 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~------------p~~G~i~~~g~~~ 488 (652)
-+++|+|+||+|||||++.|+|... |..|.+.++|.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 3699999999999999999999854 6778899988754
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00014 Score=80.55 Aligned_cols=55 Identities=29% Similarity=0.392 Sum_probs=42.6
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Q 006275 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~ 158 (652)
++++...|....+++++++.+++| +.|+||||+|||||+++|+|... .+.+.+++
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred HHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 344444454555788899999999 99999999999999999999874 55665543
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00037 Score=66.39 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=26.6
Q ss_pred eeeEEEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
++|++.++|..++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00042 Score=66.83 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00028 Score=67.14 Aligned_cols=36 Identities=33% Similarity=0.364 Sum_probs=30.3
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i 154 (652)
...+|.+++|+|++||||||+++.|++.+.+..|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999999876655554
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0024 Score=66.35 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=24.5
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
-+++|+++.|.|++|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988874
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0027 Score=69.23 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=39.2
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHH-HHHHHHccCCCeEEEEec
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVPMVIISH 314 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~-~l~~~L~~~g~tvIivsH 314 (652)
..||..+.+|+.-|...+.+.++++.|+| +++..... .+..+.++.+..+|+|.+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~--~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTP--DLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCT--TCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCC--CCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 46899999999988888888889998876 44444433 334444456777888765
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00071 Score=64.44 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=21.3
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 7899999999999999999973
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0006 Score=65.56 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKP 476 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p 476 (652)
..+.|.||+|+|||||++.|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999876643
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00029 Score=66.99 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=30.3
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
..+|.++.|+|++||||||+.+.|++.+.+..+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34789999999999999999999999887666655
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0014 Score=60.75 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00067 Score=63.57 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999975
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00052 Score=65.34 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=26.6
Q ss_pred ceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 442 ~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
++|++..+|.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999876
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0005 Score=66.58 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=26.2
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
...+|.+++|+||+|||||||++.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346789999999999999999999998764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00095 Score=62.85 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00054 Score=66.01 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00066 Score=72.75 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=33.1
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCC-----------CCCCeeEEEECce
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGEH 486 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~ 486 (652)
+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 457788999999999999999999998 6788898887653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00023 Score=68.40 Aligned_cols=42 Identities=33% Similarity=0.507 Sum_probs=31.1
Q ss_pred EEEeCCe-eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 104 SKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 104 s~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
++.|++- ++++++++..+++ .++|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4456553 5889999988887 5899999999999999999873
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00076 Score=69.30 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
..+.|+||+|+||||+.++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4688999999999999999999886655543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0016 Score=66.16 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.2
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.++..+.|.||.|+|||||++.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345568899999999999999998875
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00017 Score=74.54 Aligned_cols=54 Identities=26% Similarity=0.196 Sum_probs=42.4
Q ss_pred EEeEEEEeCCeeeeee-eeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Q 006275 100 LENISKSYKGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~-vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~ 156 (652)
.+++...|++.. ++ ++++++ |.+++++|+||+||||++..|++.+.+..|+|.+
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 345666666543 46 778766 9999999999999999999999998876666554
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0007 Score=72.52 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=32.2
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcC-----------CCCCCcEEEECC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ-----------EEPDSGNVIKAK 158 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~-----------~~p~~G~i~~~~ 158 (652)
.+..|..++|||+||+|||||+++|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4467788999999999999999999998 567778777654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0012 Score=71.86 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=28.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC------------CCCcEEEECC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE------------PDSGNVIKAK 158 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~------------p~~G~i~~~~ 158 (652)
.++|+|+||+|||||++.|+|... +.+|.+.++|
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 799999999999999999999864 4556666664
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00082 Score=65.01 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.1
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
...+|.+++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345789999999999999999999998774
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00012 Score=77.04 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=40.4
Q ss_pred EeCCeeeeeeeeEEEECCCE--EEEECCCCccHHHHHHHHHcCCCCCCc
Q 006275 106 SYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (652)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~L~G~~~p~~G 152 (652)
.|+...+++.++..|+.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 34666688888889999998 999999999999999999998766554
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.59 E-value=8.7e-05 Score=77.98 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=41.8
Q ss_pred eeeEeCCeeeeeceEEEEEcCeE--EEEEcCCCCcHHHHHHHHhCCCCCCee
Q 006275 430 LEFGYEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (652)
Q Consensus 430 v~~~y~~~~vl~~isl~i~~Ge~--~~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (652)
++..|+...+++.++..|+.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 44456667788888889999998 999999999999999999998765544
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0015 Score=60.56 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999753
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=62.15 Aligned_cols=26 Identities=42% Similarity=0.668 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPR 477 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~ 477 (652)
+++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0062 Score=60.06 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=38.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecC----------HHHHHhhcCeEEEEc
Q 006275 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD----------RAFLDQLCTKIVETE 330 (652)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd----------~~~l~~~~d~ii~l~ 330 (652)
+++++++||.-. |+.+..+.+.. |.+.+.+||++-|+ ...+..+||+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 77765555544 44459999999993 344556899999875
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=62.23 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPD 150 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~ 150 (652)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0035 Score=60.78 Aligned_cols=42 Identities=17% Similarity=0.083 Sum_probs=32.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHH
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYF 602 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~ 602 (652)
.++.+|++||.-. +|......+...+.+.. ..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999765 78888888888887653 378888887653
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00088 Score=63.56 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEECc
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGE 485 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p~---~G~i~~~g 485 (652)
.+++|+|++|||||||++.|.+.+++. -|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 579999999999999999999876443 35666554
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0013 Score=62.23 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999853
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0021 Score=66.64 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=0.0
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHh
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~ 528 (652)
.+..+.|.||+|+|||||++.|++...+....+.. .+..+...................
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~---------------------i~~~~~~~~~~~~~~~~~~~~~~~ 94 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIY---------------------SSADDFAQAMVEHLKKGTINEFRN 94 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEE---------------------EEHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE---------------------EEHHHHHHHHHHHHHcCcHHHHHH
Q ss_pred hCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCH--HHHHHHHHHHHhc---CceEEEEecC
Q 006275 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI--PSKEMLEEAISEY---KGTVITVSHD 599 (652)
Q Consensus 529 ~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~--~~~~~l~~~l~~~---~~tvi~vsHd 599 (652)
. ..++.+|++||+-. +.. .+...+...+... +..+|++++.
T Consensus 95 ~-----------------------------~~~~~vL~iDEi~~-l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 95 M-----------------------------YKSVDLLLLDDVQF-LSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp H-----------------------------HHTCSEEEEECGGG-GTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred H-----------------------------hcCCCEEEEcCccc-ccCChHHHHHHHHHHHHHHHCCCeEEEEecC
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0032 Score=63.80 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
..+.-+.|.||.|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 445669999999999999999999875
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0073 Score=62.56 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHH--c--cCCCeEEEeCCCCCCC-H----H---------HH-HH-------HHHHHccCCCeEEEEecC
Q 006275 262 SGWQMRMSLGKIL--L--QDPDLLLLDEPTNHLD-L----D---------TI-EW-------LEGYLGKQDVPMVIISHD 315 (652)
Q Consensus 262 GGqkqRv~LAraL--~--~~p~iLLLDEPts~LD-~----~---------~~-~~-------l~~~L~~~g~tvIivsHd 315 (652)
-++++.+.++.++ + .+|+++++|=.++-.- . + .+ +. |..++++.++++|++-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566667777776 4 4799999998877641 1 0 11 11 223456789999999997
Q ss_pred HH
Q 006275 316 RA 317 (652)
Q Consensus 316 ~~ 317 (652)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 65
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.017 Score=61.28 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.6
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
=+++|+++.|.|+.|+|||||+..++-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3689999999999999999999877643
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00095 Score=68.98 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHHc--cCCCeEEEeCCCCCCCHHH-HHHHHHHH----ccCCC--eEEEEecCHHHHHhhcCeEE
Q 006275 260 FSSGWQMRMSLGKILL--QDPDLLLLDEPTNHLDLDT-IEWLEGYL----GKQDV--PMVIISHDRAFLDQLCTKIV 327 (652)
Q Consensus 260 LSGGqkqRv~LAraL~--~~p~iLLLDEPts~LD~~~-~~~l~~~L----~~~g~--tvIivsHd~~~l~~~~d~ii 327 (652)
+|+|++ .+++++. ..|.++++ |.+|... ...+.+.+ +..+. .+.+++|+-+-+..+++.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 4566665 68888888 8899765 44443332 23343 55566777766666666554
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0013 Score=63.33 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0017 Score=64.23 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.0
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999974
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=61.17 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.7
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0004 Score=73.17 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=33.0
Q ss_pred eeeeeeEEEECCCE--EEEECCCCccHHHHHHHHHcCCC
Q 006275 112 VLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 112 vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 67778888899998 99999999999999999998753
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0037 Score=65.81 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=23.8
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987663
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.00089 Score=67.23 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=32.5
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345678899999999999999999998764 25677776543
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.00045 Score=72.76 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=32.7
Q ss_pred eeeeceEEEEEcCeE--EEEEcCCCCcHHHHHHHHhCCC
Q 006275 438 LLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~--~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367778888889988 9999999999999999999864
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0015 Score=62.76 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0024 Score=59.99 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0022 Score=63.55 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.6
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
.+|.+++|+|++||||||+.+.|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999874
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0075 Score=65.70 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=28.8
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
|+.+.--+++|+.+.|.|++|+|||||...++...
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44444458999999999999999999998887654
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0014 Score=62.21 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.3
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
.+++|+|++|||||||++.|++.+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 57999999999999999999987654
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0016 Score=65.23 Aligned_cols=32 Identities=38% Similarity=0.553 Sum_probs=23.8
Q ss_pred eeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
++++.++.| +.|+||+|+|||||+++|++...
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 334444555 89999999999999999998753
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.00079 Score=70.38 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred eCCeeeeeceEEEEEcC--eEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEECceecccceecccccccCCCCCCHHHH
Q 006275 434 YEDRLLFNRANLTIERG--EKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLET 510 (652)
Q Consensus 434 y~~~~vl~~isl~i~~G--e~~~i~G~NGsGKSTLl~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~ 510 (652)
+|...+++.+.-.+..| ..+.|.||+|+|||||++.+++.+. +..+.+.+.+.+
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----------------------- 96 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----------------------- 96 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC-----------------------
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc-----------------------
Q ss_pred HHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc----------------CCCeEEEeCCCCCC
Q 006275 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK----------------PSTLLVLDEPTNHL 574 (652)
Q Consensus 511 ~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~----------------~p~lLlLDEPt~~L 574 (652)
+....+-..-+=.+....-. ++.|+++|| ...+
T Consensus 97 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE-~~~l 145 (353)
T 1sxj_D 97 ------------------------------ASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDE-ADSM 145 (353)
T ss_dssp ------------------------------SSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETT-GGGS
T ss_pred ------------------------------cccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEEC-CCcc
Q ss_pred CHHHHHHHHHHHHhcCc--eEEEEecCHH
Q 006275 575 DIPSKEMLEEAISEYKG--TVITVSHDRY 601 (652)
Q Consensus 575 D~~~~~~l~~~l~~~~~--tvi~vsHd~~ 601 (652)
+......+.+.+.+... .+|+++++..
T Consensus 146 ~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 146 TADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp CHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEeCchh
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0022 Score=64.38 Aligned_cols=38 Identities=34% Similarity=0.276 Sum_probs=29.4
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~ 158 (652)
..+.+.++.|+|++||||||+.+.|+..+. .+.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 345677899999999999999999998764 23455543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.031 Score=60.56 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.7
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~ 477 (652)
++.+++++|++|+||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999998776543
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.003 Score=58.50 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0049 Score=64.81 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999997653
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0014 Score=65.28 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.023 Score=55.93 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=37.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC----------HHHHHhhccEEEEEe
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHD----------RYFVKQIVNRVVEVK 614 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd----------~~~i~~~~drvi~l~ 614 (652)
+++++++||.- .|+.+..+.+.. +.+.+.+||++-|+ ...+..+||+|..|.
T Consensus 89 ~~dvViIDEaQ-~l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQ-FFDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGG-GSCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCc-cCcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 58999999995 477665555544 33457799999993 344556899999864
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.004 Score=58.24 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.033 Score=58.99 Aligned_cols=28 Identities=43% Similarity=0.585 Sum_probs=24.3
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
-+++|+++.|.||.|+|||||...++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3789999999999999999998777543
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0029 Score=67.70 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=30.8
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
.+..++|+|++|||||||++.|++...+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 566899999999999999999998877777777654
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0043 Score=58.49 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.2
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
|.+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0023 Score=64.04 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+.|+||+|+|||||+++|++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 88999999999999999998764
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.004 Score=57.68 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.021 Score=51.83 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=27.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEec
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSH 598 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsH 598 (652)
+..+|++||. ..|+...+..+.++|.... ..+|++|.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSSCSSCEEEEES
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcCCCEEEEEECC
Confidence 4578999998 5688888888888886543 35666665
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0048 Score=57.70 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.015 Score=61.23 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
..+.|.||.|+|||||.++|+...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999998765
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.027 Score=54.01 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=39.4
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCH----------HHHHhhcCeEEEEc
Q 006275 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR----------AFLDQLCTKIVETE 330 (652)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~----------~~l~~~~d~ii~l~ 330 (652)
.+.+++++||.-- +|++..+.+..+.. .++.||+..++. ..+..+||.|..+.
T Consensus 80 ~~~dvViIDEaqf-l~~~~v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDEIVEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTHHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHHHHHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999644 77776666555444 488999998865 45667899998876
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0046 Score=57.07 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEECCCCccHHHHHHHH
Q 006275 125 KVGLVGVNGAGKTTQLRII 143 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L 143 (652)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0015 Score=63.15 Aligned_cols=30 Identities=37% Similarity=0.519 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
+++|+|++||||||+++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998876543333
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0014 Score=63.33 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
+++|+|++||||||+++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0029 Score=62.83 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0048 Score=60.01 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=0.0
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHc
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G 145 (652)
...+-+++|+|++||||||+++.|+.
T Consensus 1 M~~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 1 MSLRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp -CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0048 Score=61.97 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+++|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.012 Score=55.59 Aligned_cols=36 Identities=33% Similarity=0.622 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-C----CCCCee----EEEECcee
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG-L----EKPRGG----EVLLGEHN 487 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g-~----~~p~~G----~i~~~g~~ 487 (652)
+++|+|+.|+|||||++.+.+ . ..|+.| .+.+++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 589999999999999965544 3 456666 45555543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.08 Score=57.38 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999976654
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0058 Score=57.60 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
|.++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999997644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 652 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-33 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-35 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 8e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-34 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-34 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-33 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-28 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-33 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 8e-29 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-32 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-32 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-31 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-31 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-30 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-29 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-29 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-30 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-30 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-30 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-30 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-30 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-29 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-30 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-27 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-28 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-28 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-28 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-22 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-26 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-24 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-15 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-18 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-12 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 135 bits (340), Expect = 2e-36
Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 19/233 (8%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ ENI K + L V+ V KG+ ++G NG+GK+T + +I G + D G V
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ + + F+ + + + L
Sbjct: 65 NKDITNKE--------PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLF 116
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+ + + + K K++ L + DR S G + +G+ L+ +
Sbjct: 117 YKKWIPKEEEMV-------EKAFKILEFLKL-SHLYDRKAGELSGGQMKLVEIGRALMTN 168
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
P ++++DEP + + + L + + +II H + +
Sbjct: 169 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 221
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 125 bits (314), Expect = 6e-33
Identities = 42/220 (19%), Positives = 83/220 (37%), Gaps = 32/220 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ +N+ + + + ++++ +G+ T IIGPNG GKSTL+ +I G K G V
Sbjct: 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 483 LGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEAA------------------ 515
++ + Q + TVLE +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 516 -EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
E+ ++ +L + DRK LSGG+ + + ++ ++V+DEP +
Sbjct: 123 KEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 575 DIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIVNRVV 611
+ + E K T + + H V ++ +
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 221
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 132 bits (333), Expect = 2e-35
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 22/212 (10%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ I ++ F Y D + NL+IE+GE A +G +G GKSTL+ LI G++L
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 483 LGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK-- 533
+ HN+ L N Q + + TV E + +++ N
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDF 136
Query: 534 --------ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+ + LSGG+K RL+ + + +L+LDE T+ LD+ S+ +++EA
Sbjct: 137 IMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 196
Query: 586 ISEYKG--TVITVSHDRYFVKQIVNRVVEVKG 615
+ T + V+H + +++V ++
Sbjct: 197 LDVLSKDRTTLIVAHRLSTITH-ADKIVVIEN 227
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 107 bits (269), Expect = 8e-27
Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 49/248 (19%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ ++++S Y +LKD+ ++KGE V VG++G GK+T + +I + SG +
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
S L Q+ + S TV+E + + E V +A + A
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD-----EEVVEAAKMA 131
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
D L D +V S G +
Sbjct: 132 --------NAHDFIMNLP--------QGYDTEV--------------GERGVKLSGGQKQ 161
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324
R+S+ +I L +P +L+LDE T+ LDL++ ++ L +D +I++H + +
Sbjct: 162 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI-THAD 220
Query: 325 KIVETEMG 332
KIV E G
Sbjct: 221 KIVVIENG 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 129 bits (326), Expect = 1e-34
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 17/205 (8%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G +
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 483 LG--EHNVLPNYFEQ----NQAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRC 530
G + LP Q+ A+ TV E +A + + ++
Sbjct: 65 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 124
Query: 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---- 586
++L+R + LSGG++ R+A + +V +L++DEP ++LD + + I
Sbjct: 125 QI-EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183
Query: 587 SEYKGTVITVSHDRYFVKQIVNRVV 611
+ K T I V+HD+ + +R+
Sbjct: 184 QKLKVTTIYVTHDQVEAMTMGDRIA 208
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 127 bits (320), Expect = 8e-34
Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 52/249 (20%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
VKLEN++K + T + + +K GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ I+ + Q + V TV E AF +++ K E ++
Sbjct: 65 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYE--NIAFPLKIKKFPKDEIDKRVRW--- 119
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ + + +R A S G + R
Sbjct: 120 --------AAELLQI---------------------------EELLNRYPAQLSGGQRQR 144
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+++ + ++ +PD+LL+DEP ++LD + ++ K V + ++HD+ +
Sbjct: 145 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 204
Query: 324 TKIVETEMG 332
+I G
Sbjct: 205 DRIAVMNRG 213
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 125 bits (314), Expect = 1e-33
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 10/186 (5%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I++L GY D+ + R +TIE+G GPNG GK+TLLK I KP GE++
Sbjct: 1 SKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 483 LG---EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD- 538
V F + + +V + + A + + K + ++LD
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119
Query: 539 -RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG----TV 593
+K+ LS G R+ ++ + + VLD+P +D SK + ++I E +
Sbjct: 120 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 594 ITVSHD 599
I+ +
Sbjct: 180 ISSREE 185
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 110 bits (276), Expect = 2e-28
Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 53/234 (22%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
S +++ ++S Y VL+ +T ++KG V G NG GKTT L+ I+ +P G +I
Sbjct: 1 SKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 156 -----KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
K KI FL +E V +V E+++ A + + ALE
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISV-EDYLKAVASLYGVKVNKNEIMDALE------ 112
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
++L D + + S G R+ L
Sbjct: 113 --------SVEVL----------------------------DLKKKLGELSQGTIRRVQL 136
Query: 271 GKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLD 320
LL + ++ +LD+P +D D+ ++ + L ++ + ++ + ++ D
Sbjct: 137 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 190
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 127 bits (321), Expect = 1e-33
Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 19/198 (9%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V+ +L L NL IE+GE AI G G GK++LL LI+G + G +
Sbjct: 39 VSFSHLCLVGNPVL--KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 96
Query: 485 --------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
++P ++N + D+ ++V +A + DI + N +
Sbjct: 97 GRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQ--QDITKFAEQDN---TV 151
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TV 593
L LSGG++AR++ + + K + L +LD P +LD+ ++E + E+ T
Sbjct: 152 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 211
Query: 594 ITVSHDRYFVKQIVNRVV 611
I V+ ++ ++++
Sbjct: 212 ILVTSKMEHLR-KADKIL 228
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 114 bits (286), Expect = 8e-29
Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 44/265 (16%)
Query: 66 VESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEK 125
+E++ + + F +QSN S + G VLK++ ++KGE
Sbjct: 5 MENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEM 64
Query: 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
+ + G G+GKT+ L +I G+ E G + K + +++F SQ + M T++E +
Sbjct: 65 LAITGSTGSGKTSLLMLILGELEASEGII---KHSGRVSFCSQFSWI-MPGTIKENII-- 118
Query: 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245
++ R + +++ D+ + + + +
Sbjct: 119 ----FGVSYDEYRYKSVVKACQLQQDITKF----------------AEQDNTVLGEGGVT 158
Query: 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL---EGYL 302
L S G + R+SL + + +D DL LLD P +LD+ T E +
Sbjct: 159 L--------------SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 204
Query: 303 GKQDVPMVIISHDRAFLDQLCTKIV 327
+ ++++ L + KI+
Sbjct: 205 LMANKTRILVTSKMEHL-RKADKIL 228
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 122 bits (308), Expect = 3e-32
Identities = 38/212 (17%), Positives = 88/212 (41%), Gaps = 28/212 (13%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ ++++F Y+D + + + A GP+G GKST+ L+ +P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 483 LG---------------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521
+ + ++ +N L+ D T + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
++ + + N + + +SGG++ RLA + ++ +L+LDE T LD S+ M
Sbjct: 121 FVENMPDQLN---TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 582 LEEAISEYKG--TVITVSHDRYFVKQIVNRVV 611
+++A+ T + ++H + +++
Sbjct: 178 VQKALDSLMKGRTTLVIAHRLSTIVD-ADKIY 208
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 101 bits (254), Expect = 6e-25
Identities = 36/241 (14%), Positives = 87/241 (36%), Gaps = 35/241 (14%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+ ++ +Y +L+D+++E + + G +G GK+T ++ +P +G +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 156 --KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ N+ + ++ +E + + + + L +D
Sbjct: 62 DGQPIDNISLENWRS--QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ + D L + S G + R+++ +
Sbjct: 120 SFVENMPDQLNTEV--------------------------GERGVKISGGQRQRLAIARA 153
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEM 331
L++P +L+LDE T LD ++ ++ L + ++I+H + + KI E
Sbjct: 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-VDADKIYFIEK 212
Query: 332 G 332
G
Sbjct: 213 G 213
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 123 bits (309), Expect = 3e-32
Identities = 50/240 (20%), Positives = 106/240 (44%), Gaps = 22/240 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + ++ K Y G VLK V+ + + G+ + ++G +G+GK+T LR I E+P G +I
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 62
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL- 216
N +++ R + A K ++ + R+ + +L +
Sbjct: 63 GQN-----------INLVRDKDGQLKVADKNQLRLLRT--RLTMVFQ----HFNLWSHMT 105
Query: 217 -LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
L+ + ++ + K + ++G + S G Q R+S+ + L
Sbjct: 106 VLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA 165
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+PD+LL DEPT+ LD + + + + ++ MV+++H+ F + + ++ G
Sbjct: 166 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 121 bits (304), Expect = 2e-31
Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 31/220 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + + +L Y + +L G+ +IIG +G GKST L+ I LEKP G ++
Sbjct: 1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 483 LGEHNVLPNYFEQN---------------------QAEALDLDKTVLETVAEAA------ 515
+ N+ + Q L TVLE V EA
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 516 -EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+ + L + + LSGG++ R++ + + +L+ DEPT+ L
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180
Query: 575 DIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIVNRVV 611
D + + + T++ V+H+ F + + + V+
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 220
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 120 bits (301), Expect = 4e-31
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 32/215 (14%)
Query: 425 VTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V +++ F Y +R L+ T+ GE TA++GPNG GKST+ L+ L +P GG++
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 482 LLGEHNV---------------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
LL + ++N A L T+ E A A +
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH 131
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
I GL + +D S LSGG++ +A + +++ +L+LD+ T+ LD S+
Sbjct: 132 SFISGLPQGYD---TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 188
Query: 581 MLEEAISEYKG----TVITVSHDRYFVKQIVNRVV 611
+E+ + E +V+ ++ V+Q + ++
Sbjct: 189 QVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHIL 222
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.8 bits (246), Expect = 9e-24
Identities = 46/252 (18%), Positives = 101/252 (40%), Gaps = 53/252 (21%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
V+ +++S +Y V VL+ +T+ ++ GE LVG NG+GK+T ++ +P G +
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 155 I----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ + ++A + QE +V R+++E ++ + K+
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQV-FGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
+ L +D + D + S G
Sbjct: 131 -----HSFISGLPQGYD-----------------------------TEVDEAGSQLSGGQ 156
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLD 320
+ ++L + L++ P +L+LD+ T+ LD ++ +E L + +++I+ + +
Sbjct: 157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV- 215
Query: 321 QLCTKIVETEMG 332
+ I+ E G
Sbjct: 216 EQADHILFLEGG 227
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 118 bits (297), Expect = 1e-30
Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 30/241 (12%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+GV+L ++ K + VT +++++ EVK GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI- 60
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ ++ ++ ++ + + K + +S +
Sbjct: 61 ---------------------YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVY 99
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ K + V +D +V ++ LG + +R S G + R++LG+ ++
Sbjct: 100 ---DNIAFPLKLRKVPRQEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIV 155
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEM 331
+ P + L+DEP ++LD + L K V + ++HD+ + +I
Sbjct: 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNR 215
Query: 332 G 332
G
Sbjct: 216 G 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 113 bits (285), Expect = 4e-29
Identities = 47/211 (22%), Positives = 100/211 (47%), Gaps = 23/211 (10%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ V + ++ + + +L ++ GE ++GP+GCGK+T L++I GLE+P G++
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 483 LGEHNVL------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IK 524
+G+ V + Q+ AL TV + +A + ++ ++
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+ ++L+RK LSGG++ R+A + +V+ + ++DEP ++LD + +
Sbjct: 122 EVAELLGL-TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180
Query: 585 AISE----YKGTVITVSHDRYFVKQIVNRVV 611
+ + T I V+HD+ + +R+
Sbjct: 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIA 211
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 117 bits (295), Expect = 2e-30
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 54/243 (22%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-- 156
+++++ Y + +K + +V +G+ V L+G NGAGKTT L IAG G +I
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 157 ---------AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ M IA + + + TV E M E +++ LE
Sbjct: 68 QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG----AYNRKDKEGIKRDLE--- 120
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ F L+ + +L + S G Q
Sbjct: 121 -------WIFSLFPRLKERL--------------------------KQLGGTLSGGEQQM 147
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCT 324
+++G+ L+ P LL++DEP+ L + + + ++ ++++ + ++
Sbjct: 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207
Query: 325 KIV 327
Sbjct: 208 YGY 210
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 115 bits (289), Expect = 1e-29
Identities = 42/208 (20%), Positives = 82/208 (39%), Gaps = 23/208 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V+ +++L Y +L + RG+ +IG NG GK+T L I GL + + G+++
Sbjct: 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 484 GEHNVLPNYFEQ---------NQAEALDLDKTVLETVA--------EAAEDWRIDDIKGL 526
++ + + + TV E + + ++ I L
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL 125
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
R + L + LSGGE+ LA + ++ LL++DEP+ L + E I
Sbjct: 126 FPR---LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 587 SEYKG---TVITVSHDRYFVKQIVNRVV 611
+ T++ V + ++ +
Sbjct: 183 QKINQEGTTILLVEQNALGALKVAHYGY 210
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 117 bits (294), Expect = 2e-30
Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 52/242 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
V ++++ K +LK +++E+++GE GL+G NGAGKTT LRII+ +P SG V
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ I++L +E + E +AG +E V+
Sbjct: 63 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYL-------RFVAGFYASSSSEIEEMVE 115
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
R + L + V+++S G ++
Sbjct: 116 ------RATEIAGL---------------------------GEKIKDRVSTYSKGMVRKL 142
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTK 325
+ + L+ +P L +LDEPT+ LD+ + ++ + +++ SH+ ++ LC +
Sbjct: 143 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDR 202
Query: 326 IV 327
I
Sbjct: 203 IA 204
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 116 bits (291), Expect = 5e-30
Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 17/203 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V +K+L + + + IE GE +IGPNG GK+T L++I L KP G V +
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 485 EHNVLPNYFEQN-------QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
NV+ E + + +E + A + ++
Sbjct: 63 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG 122
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590
+ + +VS S G +L + ++ L +LDEPT+ LD+ + + + + +
Sbjct: 123 L-GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 181
Query: 591 --GTVITVSHDRYFVKQIVNRVV 611
T++ SH+ V+ + +R+
Sbjct: 182 EGLTILVSSHNMLEVEFLCDRIA 204
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 116 bits (292), Expect = 4e-30
Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 483 LGEHNVL-----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ H++ ++ + + L + +V + ++
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM-SVEKVIYAAKLAGAHD 120
Query: 526 LLGRCNFKADML-DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+ + + + + LSGG++ R+A + +V +L+ DE T+ LD S+ ++
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 585 AISEYKG--TVITVSHDRYFVKQIVNRVV 611
+ + TVI ++H VK +R++
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKN-ADRII 208
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 93.4 bits (232), Expect = 4e-22
Identities = 45/249 (18%), Positives = 97/249 (38%), Gaps = 51/249 (20%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ NI YK +L ++ +K+GE +G+VG +G+GK+T ++I P++G V+
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
++ + Q+ ++R++ + A K+ K
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNV-LLNRSIIDNISLA--NPGMSVEKVIYAAKLAG- 117
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A D + + + A S G +
Sbjct: 118 AHDFISELREGYNTIV--------------------------------GEQGAGLSGGQR 145
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323
R+++ + L+ +P +L+ DE T+ LD ++ + + K + ++II+H + + +
Sbjct: 146 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV-KNA 204
Query: 324 TKIVETEMG 332
+I+ E G
Sbjct: 205 DRIIVMEKG 213
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 116 bits (293), Expect = 5e-30
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 27/211 (12%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y R NL I G+ A++G +G GKST+ LI G +L
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 483 LGEHNV--------------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD 522
+ H++ L N N ++ E + EAA D
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 133
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+ N ++ LLSGG++ R+A + +++ S +L+LDE T+ LD S+ +
Sbjct: 134 FINKMD--NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 583 EEAISEYKG--TVITVSHDRYFVKQIVNRVV 611
+ A+ E + T + ++H ++Q + +V
Sbjct: 192 QAALDELQKNRTSLVIAHRLSTIEQ-ADEIV 221
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 102 bits (257), Expect = 3e-25
Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 50/249 (20%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ N++ +Y G V L+++ ++ G+ V LVG +G+GK+T +I + D G+++
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
A ++A +SQ + + +E E++++A
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR-----EQIEEAARM 128
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A +D + + + LD + S G +
Sbjct: 129 A--------YAMDFINKMD--------NGLDTII--------------GENGVLLSGGQR 158
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323
R+++ + LL+D +L+LDE T+ LD ++ ++ L + ++ ++I+H + + +
Sbjct: 159 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EQA 217
Query: 324 TKIVETEMG 332
+IV E G
Sbjct: 218 DEIVVVEDG 226
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 116 bits (291), Expect = 5e-30
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 30/219 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KN+ Y+ A NL I+ GE +I+GP+G GKST+L +I L+KP GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 481 VLLGEHNV-------LPNYFEQN-----QAEALDLDKTVLETVAEAAE---------DWR 519
V + L Q L T LE V + R
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
L + + K + LSGG++ R+A + + +++ D+PT LD +
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 580 ----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
++L++ E TV+ V+HD + R++ +K
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLK 219
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (288), Expect = 1e-29
Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 59/257 (22%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL+N++K+YK + LK+V +K+GE V ++G +G+GK+T L II ++P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 154 V--------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199
V + KI F+ Q+F + T E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE---------------- 105
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
L+ + A++ + + + + +
Sbjct: 106 --------------------LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ 145
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
S G Q R+++ + L +P ++L D+PT LD T ++ L+ + +V+++HD
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 316 RAFLDQLCTKIVETEMG 332
+ +I+ + G
Sbjct: 206 INVA-RFGERIIYLKDG 221
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 115 bits (290), Expect = 9e-30
Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 26/212 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ + N+ + +A +L + G+ +IG +G GKSTL++ + LE+P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 481 VLLGEHNVLP-----------NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDI 523
VL+ + Q L +TV VA E D +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
LL D D S LSGG+K R+A + + +L+ DE T+ LD + +
Sbjct: 122 TELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 584 EAISE----YKGTVITVSHDRYFVKQIVNRVV 611
E + + T++ ++H+ VK+I + V
Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCVA 212
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 108 bits (270), Expect = 4e-27
Identities = 56/258 (21%), Positives = 103/258 (39%), Gaps = 65/258 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + L +V+ V G+ G++G +GAGK+T +R + E P G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 154 VI-------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ K+ +I + Q F + SRTV +E+ K E
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA----LPLELDNTPKDEV 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ E LL L D D +
Sbjct: 118 KRRVTE-----------LLSLVGL---------------------------GDKHDSYPS 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQ-DVPMVIISH 314
+ S G + R+++ + L +P +LL DE T+ LD +I L + ++ + +++I+H
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH 199
Query: 315 DRAFLDQLCTKIVETEMG 332
+ + ++C + G
Sbjct: 200 EMDVVKRICDCVAVISNG 217
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 111 bits (279), Expect = 2e-28
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 17/203 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 485 EHNVL------PNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNF 532
E + Q+ AL +V E ++ + + + +
Sbjct: 61 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 120
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE---- 588
A +LDRK LSGG++ R+A + +V ++ +LDEP ++LD + + IS
Sbjct: 121 -AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 179
Query: 589 YKGTVITVSHDRYFVKQIVNRVV 611
T+I V+HD+ + +++V
Sbjct: 180 LGRTMIYVTHDQVEAMTLADKIV 202
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 109 bits (273), Expect = 1e-27
Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 52/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
V+L+N++K++ V V KD+ ++ +GE V VG +G GK+T LR+IAG E SG++
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ + + Q + + +V E K + A K Q+ +
Sbjct: 61 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK--LAGAKKEVINQRVNQ----- 113
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + L A DR + S G + R++
Sbjct: 114 ------VAEVLQL---------------------------AHLLDRKPKALSGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLCTK 325
+G+ L+ +P + LLDEP ++LD + + M+ ++HD+ L K
Sbjct: 141 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 200
Query: 326 IVETEMG 332
IV + G
Sbjct: 201 IVVLDAG 207
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 111 bits (279), Expect = 2e-28
Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 21/205 (10%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V+ ++++ + + GE ++GPNG GKSTLL + G+ +G
Sbjct: 3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFA 58
Query: 484 GE-------HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
G+ + + +Q + V + D ++ + D
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK 118
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPST-------LLVLDEPTNHLDIPSKEMLEEAISEY 589
L R + LSGGE R+ +++ + LL+LDEP N LD+ + L++ +S
Sbjct: 119 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 590 KG---TVITVSHDRYFVKQIVNRVV 611
++ SHD + +R
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAW 203
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 99.6 bits (248), Expect = 3e-24
Identities = 56/250 (22%), Positives = 89/250 (35%), Gaps = 70/250 (28%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++L+++++S T L ++ EV+ GE + LVG NGAGK+T L +AG G++
Sbjct: 4 MQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFA 58
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
K + A+LSQ+ + V + E +
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLT----LHQHDKTRTELLNDVAG--- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
A+ LD D R S G R
Sbjct: 112 ---------------------ALALD-----------------DKLGRSTNQLSGGEWQR 133
Query: 268 MSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRA 317
+ L ++LQ LLLLDEP N LD+ L+ L +Q + +V+ SHD
Sbjct: 134 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN 193
Query: 318 FLDQLCTKIV 327
+ +
Sbjct: 194 HTLRHAHRAW 203
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 110 bits (275), Expect = 7e-28
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 15/204 (7%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ I++L +++ L + +L +E GE I+GP G GK+ L+LI G P G +LL
Sbjct: 1 MIEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 484 GEHNVLPNYFEQ------NQAEALDLDKTVLETVAEAAEDWRIDD---IKGLLGRCNFKA 534
+V E+ Q +L V + + +I D + +
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE- 118
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YK 590
+LDR LSGGE+ R+A + +V +L+LDEP + LD ++E E +S K
Sbjct: 119 HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178
Query: 591 GTVITVSHDRYFVKQIVNRVVEVK 614
TV+ ++HD+ + + +R+ V
Sbjct: 179 LTVLHITHDQTEARIMADRIAVVM 202
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 92.4 bits (229), Expect = 8e-22
Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 56/247 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++E++S+ +K L +++ +V+ GE ++G GAGKT L +IAG PDSG ++
Sbjct: 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ IAF+ Q + + V++ F M+ +RV D
Sbjct: 61 GKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK--NLEFGMRMKKIKDPKRVLDTAR----D 114
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + L DR + S G Q R++
Sbjct: 115 LKIEHLL-------------------------------------DRNPLTLSGGEQQRVA 137
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325
L + L+ +P +LLLDEP + LD T E L + ++ I+HD+ + +
Sbjct: 138 LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADR 197
Query: 326 IVETEMG 332
I G
Sbjct: 198 IAVVMDG 204
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 106 bits (265), Expect = 2e-26
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 24/215 (11%)
Query: 423 SVVTIKNL--EFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KN+ F + + N+ IE GE+ I+GP+G GK+T +++I GL+ P GE
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 481 VLLGEHNVLPNYFEQ-----------NQAEALDLDKTVLETVAEAAE------DWRIDDI 523
+ + V N Q AL + T E +A + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
+ + + +L+ LSG ++ R+A + +VK +LL+LDEP ++LD ++
Sbjct: 122 EEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 584 EAISE----YKGTVITVSHDRYFVKQIVNRVVEVK 614
+ E T++ VSHD + I +RV +
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV 215
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 97.8 bits (243), Expect = 2e-23
Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 61/257 (23%)
Query: 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++N+SK +K V L +V ++ GE+ G++G +GAGKTT +RIIAG + P +G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 154 V-------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-EEMEIAGKLERV 199
+ I + KI + Q + + + T E +M +RV
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
++ + +D+ L +
Sbjct: 122 EEVAK----ILDIHHVL-------------------------------------NHFPRE 140
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
S Q R++L + L++DP LLLLDEP ++LD + + + V ++++SHD
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 316 RAFLDQLCTKIVETEMG 332
A + + ++ G
Sbjct: 201 PADIFAIADRVGVLVKG 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 98.5 bits (245), Expect = 7e-24
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 430 LEFGYEDRLLFNRANLTIE-RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L+ E RL R N+ E + ++GP G GKS L+LI G+ KP GEV L ++
Sbjct: 3 LKVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 489 LP------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL---LGRCNFKADMLDR 539
P Q AL +V +A + + + A +LDR
Sbjct: 63 TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR 122
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGTVIT 595
K + LSGGE+ R+A + +V LL+LDEP + +D+ +K +L E + + ++
Sbjct: 123 KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 596 VSHDRYFVKQIVNRVV 611
V+HD + + V
Sbjct: 183 VTHDLIEAAMLADEVA 198
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.7 bits (178), Expect = 6e-15
Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 57/243 (23%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------ 155
K + +V +E+ + L+G GAGK+ L +IAG +PD G V
Sbjct: 6 RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 156 --KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
I F+ Q++ + +V + +E + RV++ E + L+
Sbjct: 63 TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAE-KLGIAHLL 120
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
DR A S G + R++L +
Sbjct: 121 ----------------------------------------DRKPARLSGGERQRVALARA 140
Query: 274 LLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L+ P LLLLDEP + +D +E L + DVP++ ++HD L ++
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200
Query: 330 EMG 332
G
Sbjct: 201 LNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 79.6 bits (195), Expect = 7e-18
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 15/166 (9%)
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV 511
K I G G GK+TL+K I+ R E +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRT------------GFRI 49
Query: 512 AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
+I K + + ++ + A+ + ++++DE
Sbjct: 50 ITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIG 109
Query: 572 NHLDI--PSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
++++ + + + V+ R V +V + + G
Sbjct: 110 KMELFSKKFRDLVRQIMHDPNVNVVATIPIR-DVHPLVKEIRRLPG 154
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 47.7 bits (112), Expect = 7e-07
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
K+ + G G GKTT ++ I + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFW 32
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 38.4 bits (88), Expect = 9e-04
Identities = 7/81 (8%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL--DTIEWLEGYLGKQDVPMVI 311
+ + + + + ++++DE + + + +V +V
Sbjct: 76 NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVA 135
Query: 312 ISHDRAFLDQLCTKIVETEMG 332
R L +I
Sbjct: 136 TIPIRDVH-PLVKEIRRLPGA 155
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.001
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGT---VITVSHDRYF 602
L F +PS VLDE LDI + + + I ++ I +S
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM 398
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 652 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.84 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.81 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.63 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.62 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.62 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.59 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.01 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.97 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.85 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.68 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.63 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.61 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.1 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.84 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.79 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.63 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.22 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.17 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.93 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.92 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.88 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.87 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.85 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.8 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.79 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.75 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.73 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.73 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.66 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.64 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.59 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.55 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.54 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.54 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.49 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.48 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.46 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.4 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.4 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.38 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.35 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.31 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.24 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.24 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.24 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.24 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.22 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.21 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.21 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.2 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.16 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.15 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.14 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.11 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.11 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.05 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.01 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.99 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.95 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.91 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.9 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.9 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.85 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.85 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.81 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.78 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.77 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.71 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.7 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.69 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.64 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.62 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.61 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.61 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.6 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.59 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.56 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.56 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.52 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.51 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.51 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.51 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.49 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.49 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.46 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.45 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.45 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.44 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.44 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.44 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.42 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.41 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.41 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.4 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.4 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.38 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.37 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.36 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.35 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.34 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.32 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.31 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.31 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.3 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.23 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.22 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.21 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.2 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.19 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.16 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.15 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.13 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.12 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.1 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.1 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.08 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.08 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.08 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.08 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.05 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.04 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.99 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.98 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.97 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.92 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.9 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.87 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.86 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.84 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.81 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.81 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.77 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.76 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.76 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.74 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.68 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.66 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.63 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.63 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.63 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.62 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.59 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.59 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.58 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.57 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.57 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.57 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.55 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.53 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.51 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.49 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.48 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.47 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.37 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.35 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.34 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.33 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.3 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.29 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.25 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.23 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.23 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.23 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.23 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.16 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.15 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.13 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.13 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.11 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.11 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.09 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.09 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.05 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.03 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.01 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.99 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.99 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.96 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.95 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.95 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.95 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.93 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.93 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.92 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.91 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.91 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.9 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.86 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.85 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.85 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.82 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.82 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.81 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.78 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.78 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.77 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.76 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.76 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.76 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.75 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.75 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.72 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.72 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.7 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.66 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.62 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.6 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.6 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.57 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.55 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.54 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.51 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.5 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.47 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.46 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.46 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.45 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.42 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.41 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.39 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.39 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.37 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.35 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.34 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.34 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.31 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.3 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.3 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.28 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.28 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.25 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.24 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.24 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.24 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.23 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.22 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.21 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.2 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.19 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.16 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.1 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.08 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.07 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.06 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.05 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.05 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.03 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.02 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.01 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.96 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.94 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.93 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.93 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.91 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.88 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.86 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.82 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.82 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.8 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.8 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.75 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.74 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.74 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.72 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.7 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.69 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.69 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.66 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.66 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.62 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.58 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.57 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.57 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.53 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.5 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.48 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.47 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.37 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.36 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.36 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.36 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.34 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.33 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.3 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.3 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.24 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.23 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.21 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.2 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.15 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.15 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.15 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.13 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.07 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.07 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.06 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.05 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.04 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.02 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.01 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.96 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.85 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.83 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.83 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.81 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.8 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.8 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.8 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.78 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.74 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.73 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.72 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.72 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.71 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.68 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.66 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.63 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.62 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.54 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.53 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 91.49 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.47 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.44 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.44 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.36 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.33 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.31 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.31 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.3 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.28 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.27 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.25 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.23 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.17 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.14 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.12 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.12 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.07 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.04 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.0 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.94 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.92 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.9 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.9 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.76 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.68 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.61 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.57 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.51 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.5 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.46 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.41 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.38 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.37 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.32 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.19 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.14 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.1 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.04 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.02 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.01 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.0 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.82 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.78 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 89.74 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.64 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.44 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.42 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.26 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.23 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.09 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.99 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.91 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.91 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 88.73 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.7 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.6 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.57 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.56 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 88.22 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.13 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.1 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.84 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.36 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.9 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 86.79 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.73 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 86.72 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.69 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.61 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.08 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.96 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.92 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.74 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.71 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.64 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 85.6 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.51 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 85.46 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.4 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.37 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.35 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.31 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.24 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.96 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 84.53 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 84.47 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 84.43 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 84.35 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 83.82 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 83.56 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 83.41 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.34 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 83.33 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.08 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 83.0 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.58 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.44 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 82.36 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 81.68 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 81.51 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 81.12 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.9 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 80.64 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 80.48 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 80.23 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.16 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.3e-52 Score=418.50 Aligned_cols=211 Identities=28% Similarity=0.401 Sum_probs=181.9
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEE
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFL 166 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v 166 (652)
+..|+++|++|+|++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+||||
T Consensus 4 M~~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 83 (239)
T d1v43a3 4 MVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 83 (239)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred cCeEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEE
Confidence 445999999999999999999999999999999999999999999999999999999999999853 259999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++.+||+||+...... ..++..+.++++.++++.+
T Consensus 84 ~Q~~~l~~~ltv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~ 124 (239)
T d1v43a3 84 FQSYAVWPHMTVYENIAFPLKI---------------------------------------KKFPKDEIDKRVRWAAELL 124 (239)
T ss_dssp EC------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHHT
T ss_pred eechhhcccchHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHc
Confidence 9999998999999998632110 0123345677888999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~ 322 (652)
|+. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|+|||+||||++++.++
T Consensus 125 ~l~-~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~ 203 (239)
T d1v43a3 125 QIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTM 203 (239)
T ss_dssp TCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred CCh-hhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHh
Confidence 996 68999999999999999999999999999999999999999999999988764 3599999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
||||++|++|++ ...|+.+++..
T Consensus 204 ~dri~vm~~G~i-v~~G~~~el~~ 226 (239)
T d1v43a3 204 GDRIAVMNRGQL-LQIGSPTEVYL 226 (239)
T ss_dssp CSEEEEEETTEE-EEEECHHHHHH
T ss_pred CCEEEEEECCEE-EEEcCHHHHHh
Confidence 999999999998 58898877654
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.4e-52 Score=416.01 Aligned_cols=210 Identities=29% Similarity=0.437 Sum_probs=186.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------c
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------M 161 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------~ 161 (652)
+.|+++|++|+|++.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 2 ~~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred CcEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence 35999999999999999999999999999999999999999999999999999999999998742 3
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
+||||+|++.+++.+||+||+..... ....+..+.++++.+
T Consensus 82 ~ig~v~Q~~~L~~~ltV~eni~~~~~---------------------------------------~~~~~~~e~~~~v~~ 122 (240)
T d1g2912 82 DIAMVFQSYALYPHMTVYDNIAFPLK---------------------------------------LRKVPRQEIDQRVRE 122 (240)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHH---------------------------------------HTTCCHHHHHHHHHH
T ss_pred cceecccchhhcchhhhhHhhhhhHH---------------------------------------HcCCCHHHHHHHHHH
Confidence 59999999999999999999863211 011334456778999
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (652)
+++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|.|||+||||++
T Consensus 123 ~l~~~~l~-~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~ 201 (240)
T d1g2912 123 VAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (240)
T ss_dssp HHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH
Confidence 99999996 68899999999999999999999999999999999999999999999988764 35999999999999
Q ss_pred HHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
++.++||||++|++|++ +..|+.+++..
T Consensus 202 ~~~~~~drv~vm~~G~i-v~~G~~~el~~ 229 (240)
T d1g2912 202 EAMTMGDRIAVMNRGVL-QQVGSPDEVYD 229 (240)
T ss_dssp HHHHHCSEEEEEETTEE-EEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEE-EEEcCHHHHHh
Confidence 99999999999999998 47788777653
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-52 Score=416.94 Aligned_cols=208 Identities=26% Similarity=0.411 Sum_probs=153.2
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q~ 169 (652)
|+++||+|+|++.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+||||+|+
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccc
Confidence 689999999999999999999999999999999999999999999999999999999999853 359999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+++.+||+||+...... ...+..+.++++.++++.+++.
T Consensus 81 ~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~l~ 121 (232)
T d2awna2 81 YALYPHLSVAENMSFGLKL---------------------------------------AGAKKEVINQRVNQVAEVLQLA 121 (232)
T ss_dssp CCC------------------------------------------------------------CHHHHHHHHHHHHC---
T ss_pred cccccchhHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhCCCh
Confidence 9999999999998633110 0122345567888999999997
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCe
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ 325 (652)
+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++++..+|||
T Consensus 122 -~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dr 200 (232)
T d2awna2 122 -HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 200 (232)
T ss_dssp -------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE
T ss_pred -hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 68899999999999999999999999999999999999999999998887763 4699999999999999999999
Q ss_pred EEEEcCCeEEEecCChHHHHH
Q 006275 326 IVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 326 ii~l~~G~~~~~~g~~~~~~~ 346 (652)
|++|++|++ .+.|+.+++..
T Consensus 201 i~vm~~G~i-v~~G~~~el~~ 220 (232)
T d2awna2 201 IVVLDAGRV-AQVGKPLELYH 220 (232)
T ss_dssp EEEEETTEE-EEEECHHHHHH
T ss_pred EEEEECCEE-EEEeCHHHHHh
Confidence 999999998 57888877654
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.2e-51 Score=411.75 Aligned_cols=210 Identities=25% Similarity=0.383 Sum_probs=185.4
Q ss_pred CceEEEeEEEEe--CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------
Q 006275 96 SGVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------- 160 (652)
..|+++|++|+| +...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CCEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred CEEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 359999999999 45679999999999999999999999999999999999999999999998742
Q ss_pred ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHH
Q 006275 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (652)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (652)
.+||||+|++.+++.+||+||+...... ..++..+.++++.
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~---------------------------------------~~~~~~~~~~~v~ 122 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTN---------------------------------------MKMSKEEIRKRVE 122 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTT---------------------------------------SSCCHHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHh---------------------------------------hcCCHHHHHHHHH
Confidence 2599999999999999999999643210 0133445677889
Q ss_pred HHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCH
Q 006275 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDR 316 (652)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~ 316 (652)
++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|+|||+||||+
T Consensus 123 ~~l~~~gL~-~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~ 201 (242)
T d1oxxk2 123 EVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201 (242)
T ss_dssp HHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred HHHhhcChH-hhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH
Confidence 999999996 78999999999999999999999999999999999999999999999888763 3599999999999
Q ss_pred HHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
+++..+||||++|++|++ ...|+..++..
T Consensus 202 ~~~~~~~dri~vm~~G~i-v~~g~~~el~~ 230 (242)
T d1oxxk2 202 ADIFAIADRVGVLVKGKL-VQVGKPEDLYD 230 (242)
T ss_dssp HHHHHHCSEEEEEETTEE-EEEECHHHHHH
T ss_pred HHHHHhCCEEEEEECCEE-EEEcCHHHHHh
Confidence 999999999999999998 57788777653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.2e-51 Score=404.97 Aligned_cols=205 Identities=27% Similarity=0.395 Sum_probs=180.3
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc--------eEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~--------~i~~v~Q 168 (652)
+|+++|++|+|++ .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +||||+|
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeecc
Confidence 4899999999976 589999999999999999999999999999999999999999999998542 5999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++.+||+||+...... . .. ...+++.++++.+|+
T Consensus 80 ~~~l~~~~tV~enl~~~~~~---------------~------------------------~~---~~~~~~~~~l~~~~l 117 (229)
T d3d31a2 80 NYSLFPHMNVKKNLEFGMRM---------------K------------------------KI---KDPKRVLDTARDLKI 117 (229)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------H------------------------CC---CCHHHHHHHHHHTTC
T ss_pred ccccCccccHHHHHHHHHhh---------------c------------------------cc---cHHHHHHHHHHHhcc
Confidence 99999999999998633210 0 01 113467788889999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|.|||+||||++++.++||
T Consensus 118 ~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~d 196 (229)
T d3d31a2 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (229)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred h-hhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCC
Confidence 6 68899999999999999999999999999999999999999999999888763 469999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
||++|++|++ ++.|+.+++..
T Consensus 197 rv~vm~~G~i-v~~g~~~el~~ 217 (229)
T d3d31a2 197 RIAVVMDGKL-IQVGKPEEIFE 217 (229)
T ss_dssp EEEEESSSCE-EEEECHHHHHS
T ss_pred EEEEEECCEE-EEEcCHHHHHh
Confidence 9999999998 58898877643
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-51 Score=409.23 Aligned_cols=207 Identities=26% Similarity=0.431 Sum_probs=182.9
Q ss_pred ceEEEeEEEEeCCe----eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------
Q 006275 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------ 160 (652)
+|+++|++++|+.. ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 48999999999643 58999999999999999999999999999999999999999999999853
Q ss_pred -ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHH
Q 006275 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (652)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (652)
.+||||+|++.+++.+||+||+..... ...++..+.++++
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~---------------------------------------~~~~~~~~~~~~v 121 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLE---------------------------------------LDNTPKDEVKRRV 121 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHH---------------------------------------TTTCCTTHHHHHH
T ss_pred hccccccccccccCCCccHHHHHHHHHH---------------------------------------HcCCCHHHHHHHH
Confidence 259999999999889999999863211 0123445667888
Q ss_pred HHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecC
Q 006275 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHD 315 (652)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd 315 (652)
.++|+.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|+|||+||||
T Consensus 122 ~~~L~~vgL~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd 200 (240)
T d3dhwc1 122 TELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200 (240)
T ss_dssp HHHHHHHSTT-TTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSC
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCC
Confidence 9999999997 67899999999999999999999999999999999999999999999988764 359999999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
++++..+||||++|++|++ ++.|+++++
T Consensus 201 l~~~~~~~dri~vl~~G~i-v~~G~~~ei 228 (240)
T d3dhwc1 201 MDVVKRICDCVAVISNGEL-IEQDTVSEV 228 (240)
T ss_dssp HHHHHHHCSEEEEEETTEE-EEEEETTTT
T ss_pred HHHHHHhCCEEEEEECCEE-EEECCHHHH
Confidence 9999999999999999998 577776654
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.7e-51 Score=405.01 Aligned_cols=205 Identities=26% Similarity=0.364 Sum_probs=175.5
Q ss_pred ceEEEeEEEEeCC--e--eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-----------
Q 006275 97 GVKLENISKSYKG--V--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (652)
Q Consensus 97 ~i~v~~ls~~y~~--~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------- 161 (652)
+|+++|++|+|+. . .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 4899999999953 2 389999999999999999999999999999999999999999999998532
Q ss_pred ---eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 162 ---~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
.||||+|++.+++.+||+||+...... .. ....+..+..++
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~---------------~~---------------------~~~~~~~~~~~~ 124 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIF---------------KY---------------------RGAMSGEERRKR 124 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHT---------------CC---------------------SSCCCHHHHHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHHHHH---------------hc---------------------cCCCCHHHHHHH
Confidence 499999999999999999998632110 00 001223344567
Q ss_pred HHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 006275 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (652)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsH 314 (652)
+.++|+.+|+.+...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +.|+|||+|||
T Consensus 125 ~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTH 204 (230)
T d1l2ta_ 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (230)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECC
Confidence 77889999998667899999999999999999999999999999999999999999999988764 46999999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecC
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEG 339 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g 339 (652)
|++++ ++||||++|++|+++ .+|
T Consensus 205 d~~~a-~~~drv~~m~~G~Iv-~~g 227 (230)
T d1l2ta_ 205 DINVA-RFGERIIYLKDGEVE-REE 227 (230)
T ss_dssp CHHHH-TTSSEEEEEETTEEE-EEE
T ss_pred CHHHH-HhCCEEEEEECCEEE-Eec
Confidence 99987 799999999999984 444
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.2e-50 Score=402.26 Aligned_cols=204 Identities=28% Similarity=0.429 Sum_probs=179.6
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceeccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~~ 496 (652)
|+++||+++|++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+|++|+
T Consensus 7 I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 86 (239)
T d1v43a3 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 86 (239)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeec
Confidence 89999999999999999999999999999999999999999999999999999999999999873 3566665
Q ss_pred ccccCCCCCCHHHHHHHhhhh--c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 497 QAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
..+++.+||.||+.+.... + ..+.+.++|+.+++ .+..++++.+|||||||||+|||||+.+|+|||||||
T Consensus 87 --~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEP 163 (239)
T d1v43a3 87 --YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 163 (239)
T ss_dssp -------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-GGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred --hhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-hhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCC
Confidence 4688899999999876432 1 23457889999999 4789999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
|++||+.++..+.+.|+++ +.|||+||||++++.++||||++|++|+|+ ..|++++.++..
T Consensus 164 ts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el~~~P 228 (239)
T d1v43a3 164 LSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVYLRP 228 (239)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHHCC
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhCC
Confidence 9999999999999988764 569999999999999999999999999998 469999887553
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.9e-50 Score=408.02 Aligned_cols=211 Identities=26% Similarity=0.432 Sum_probs=185.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc---------------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~--------------- 161 (652)
.|+++|++|+|++.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence 48999999999999999999999999999999999999999999999999999999999987532
Q ss_pred --------eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChh
Q 006275 162 --------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (652)
Q Consensus 162 --------~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (652)
+||||+|+|.+++.+||.||+...... ....+..
T Consensus 82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~--------------------------------------~~~~~~~ 123 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------------------------------VLGLSKH 123 (258)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH--------------------------------------TTCCCHH
T ss_pred hHHHHHhcceEEEEechhhccchhcchhhhhhHHH--------------------------------------hcCCCHH
Confidence 499999999998999999998632100 0012233
Q ss_pred cHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 006275 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (652)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvI 310 (652)
+..+++.++++.+|+.+...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til 203 (258)
T d1b0ua_ 124 DARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 203 (258)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceE
Confidence 4566788899999998666788899999999999999999999999999999999999999999988764 5689999
Q ss_pred EEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 311 ivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
+||||++++..+||||++|.+|++ ++.|+.+++..
T Consensus 204 ~vtHdl~~~~~~adri~vm~~G~i-v~~g~~~ev~~ 238 (258)
T d1b0ua_ 204 VVTHEMGFARHVSSHVIFLHQGKI-EEEGDPEQVFG 238 (258)
T ss_dssp EECSCHHHHHHHCSEEEEEETTEE-EEEECHHHHHH
T ss_pred EEeCCHHHHHHhCCEEEEEECCEE-EEEcCHHHHHh
Confidence 999999999999999999999998 58899888754
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.9e-50 Score=400.35 Aligned_cols=205 Identities=24% Similarity=0.396 Sum_probs=183.2
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (652)
.|+++||+++|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ 82 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccccc
Confidence 589999999999999999999999999999999999999999999999999999999999998752
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
.++++|+ +.+++.+||.||+.+....+ ..+.+.++++.+++ .+..+++|.+|||||||||+|||||+.+|+
T Consensus 83 ig~v~Q~--~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l-~~~~~~~p~~LSGGqkQRv~IAraL~~~P~ 159 (240)
T d1g2912 83 IAMVFQS--YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (240)
T ss_dssp EEEECSC--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC-GGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred ceecccc--hhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2355554 46888999999998864321 23458889999999 578899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
||||||||+|||+.++..+++.|+++ +.|||+||||++++..+||||++|++|+|++ .|++++.++..
T Consensus 160 iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~-~G~~~el~~~P 231 (240)
T d1g2912 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVYDKP 231 (240)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHSC
T ss_pred EEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhCC
Confidence 99999999999999999999988654 6799999999999999999999999999985 59998877543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-50 Score=402.75 Aligned_cols=204 Identities=27% Similarity=0.418 Sum_probs=150.2
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceeccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~~ 496 (652)
|+++||+++|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. .++++|+
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccc
Confidence 68999999999999999999999999999999999999999999999999999999999998762 2566665
Q ss_pred ccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 497 QAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
+.+++.+||+||+.+..... ..+++.++|+.+++. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 --~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEP 157 (232)
T d2awna2 81 --YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 157 (232)
T ss_dssp --CCC---------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEEST
T ss_pred --cccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 46888999999998764321 234588999999995 788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 571 TNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
|++||+.++..+++.|.+ .+.|||+||||++++..+||||++|++|+|+ ..|++++.++..
T Consensus 158 ts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el~~~P 222 (232)
T d2awna2 158 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYHYP 222 (232)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEeCHHHHHhCC
Confidence 999999999999988865 3679999999999999999999999999998 469999887653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.3e-50 Score=397.01 Aligned_cols=204 Identities=27% Similarity=0.418 Sum_probs=183.3
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++||+++|++ .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .++++|
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeecc
Confidence 5899999999986 5899999999999999999999999999999999999999999999999873 356666
Q ss_pred cccccCCCCCCHHHHHHHhhh---hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 496 NQAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
+ ..+++.+||.||+.+... ....+++.++++.+++. +..++++.+|||||||||+|||||+.+|+||||||||+
T Consensus 80 ~--~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts 156 (229)
T d3d31a2 80 N--YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (229)
T ss_dssp T--CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred c--cccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcch-hhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCc
Confidence 5 468889999999987653 23456788999999994 78899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 573 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
+||+.++..+.+.|++. +.|||+||||++++..+||||++|++|+++ ..|++++.++..
T Consensus 157 ~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv-~~g~~~el~~~P 219 (229)
T d3d31a2 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIFEKP 219 (229)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHHSSC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhCC
Confidence 99999999999988653 569999999999999999999999999998 569999987653
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2e-49 Score=395.54 Aligned_cols=205 Identities=26% Similarity=0.394 Sum_probs=182.4
Q ss_pred EEEEEeeeeEe--CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------
Q 006275 424 VVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (652)
Q Consensus 424 ~i~~~~v~~~y--~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (652)
.|+++||+++| ++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 38999999999 5678999999999999999999999999999999999999999999999998762
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p 562 (652)
.++++|+ +.+++.+||+||+.+..... ..+++.++++.+|+ .+..++++.+|||||||||+|||||+.+|
T Consensus 83 ~ig~vfQ~--~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~~~p~~LSGGqkQRvaiARaL~~~P 159 (242)
T d1oxxk2 83 KIGMVFQT--WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI-HHVLNHFPRELSGAQQQRVALARALVKDP 159 (242)
T ss_dssp CEEEEETT--SCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cceEEecc--ccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcCh-HhhhhCChhhCCHHHHhHHHHHhHHhhcc
Confidence 2355554 46888999999999875421 23458899999999 57899999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+|++ .|++++.++..
T Consensus 160 ~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~-~g~~~el~~~P 232 (242)
T d1oxxk2 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLYDNP 232 (242)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHSC
T ss_pred cceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhCC
Confidence 999999999999999999999988754 5699999999999999999999999999984 68998887643
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-49 Score=396.33 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=181.3
Q ss_pred EEEEEeeeeEeCCe----eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~----~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
+|+++||+++|+.. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 58999999999743 5899999999999999999999999999999999999999999999999862
Q ss_pred ---cceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 490 ---~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
.++++|+ ..+++.+||+||+.+.... ...+.+.++|+.+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 rr~ig~VfQ~--~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~-~~~~~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 81 RRQIGMIFQH--FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHEEECCSS--CCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTT-TTTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred hccccccccc--cccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHhhhhcc
Confidence 3566665 4678899999999886431 1235688999999995 67899999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||||++|++|+|++ .|++++.++.
T Consensus 158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~-~G~~~ei~~~ 231 (240)
T d3dhwc1 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSEVFSH 231 (240)
T ss_dssp CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEE-EEETTTTTCS
T ss_pred CCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999999998754 5699999999999999999999999999984 6888887644
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.1e-49 Score=398.20 Aligned_cols=210 Identities=21% Similarity=0.319 Sum_probs=176.7
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-----------eE
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~-----------~i 163 (652)
+.+|+++|++|+|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 4 d~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred ceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence 4579999999999999999999999999999999999999999999999999999999999998532 49
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|++.+++.+||+||+....... .......+.+.+++
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~----------------------------------------~~~~~~~~~~~~~~ 123 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNR----------------------------------------KDKEGIKRDLEWIF 123 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTC----------------------------------------CCSSHHHHHHHHHH
T ss_pred cccCcccccCCcccHHHHHHHHHHhc----------------------------------------CCHHHHHHHHHHHH
Confidence 99999999989999999986322100 01111222233333
Q ss_pred hhc-CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006275 244 PEL-GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (652)
Q Consensus 244 ~~l-gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (652)
..+ ++ .+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.+++++++ +.|+|||+||||++++
T Consensus 124 ~~~~~l-~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~ 202 (240)
T d1ji0a_ 124 SLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA 202 (240)
T ss_dssp HHCHHH-HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred HHhhCh-HHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 333 23 256788899999999999999999999999999999999999999999988764 5699999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
.++||||++|++|++ .+.|+++++..
T Consensus 203 ~~~~drv~vl~~G~i-v~~g~~~el~~ 228 (240)
T d1ji0a_ 203 LKVAHYGYVLETGQI-VLEGKASELLD 228 (240)
T ss_dssp HHHCSEEEEEETTEE-EEEEEHHHHHT
T ss_pred HHhCCEEEEEECCEE-EEEcCHHHHhc
Confidence 999999999999998 57898877653
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.7e-49 Score=393.25 Aligned_cols=209 Identities=26% Similarity=0.381 Sum_probs=183.5
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEEEe
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~v~ 167 (652)
+|+++|++++|+++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ ..+||||
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence 4899999999999999999999999999999999999999999999999999999999998853 3599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|++.+++++|+.||+..... + ......+..+.++.+++.++
T Consensus 82 q~~~~~~~ltv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~~ 122 (238)
T d1vpla_ 82 EEAGAYRNMQGIEYLRFVAG---------------F------------------------YASSSSEIEEMVERATEIAG 122 (238)
T ss_dssp TTCCCCTTSBHHHHHHHHHH---------------H------------------------HCCCHHHHHHHHHHHHHHHC
T ss_pred eccccCCCccHHHHHHHHHH---------------h------------------------cCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999852110 0 01222344566778888889
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcC
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d 324 (652)
+. +..++++.+||||||||++|||||+++|++|||||||+|||+.++..+.++++ +.|+|||++|||++++..+||
T Consensus 123 l~-~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~d 201 (238)
T d1vpla_ 123 LG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCD 201 (238)
T ss_dssp CG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCS
T ss_pred CH-HHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 86 67888999999999999999999999999999999999999999999988774 469999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
||++|++|++ .+.|+++++..
T Consensus 202 rv~vl~~G~i-v~~g~~~el~~ 222 (238)
T d1vpla_ 202 RIALIHNGTI-VETGTVEELKE 222 (238)
T ss_dssp EEEEEETTEE-EEEEEHHHHHH
T ss_pred EEEEEECCEE-EEEcCHHHHHh
Confidence 9999999998 47788877653
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-49 Score=402.47 Aligned_cols=223 Identities=21% Similarity=0.246 Sum_probs=184.9
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-----------eE
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~-----------~i 163 (652)
+.+|+++|++++|++.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 2 M~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 2 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred cceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 4579999999999999999999999999999999999999999999999999999999999998542 49
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|+||++.+++.+||+||+..+..... .. .+..+.............+++.+++
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~------------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~l 135 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPG------------------ES--------PLNSLFYKKWIPKEEEMVEKAFKIL 135 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTT------------------SC--------HHHHHHHCSSCCCCHHHHHHHHHHH
T ss_pred CccCCccccCCCCeeeeeeeehhhhcc------------------cc--------chhhhhhhcccccHHHHHHHHHHHH
Confidence 999999999899999999863210000 00 0000000000112234456777889
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~~~l~ 320 (652)
+.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+++ ++.|+|||+||||++++.
T Consensus 136 ~~~~l~-~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~ 214 (254)
T d1g6ha_ 136 EFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL 214 (254)
T ss_dssp HHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTG
T ss_pred HhcCcc-hhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence 999986 5789999999999999999999999999999999999999999999998876 457999999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
++||||++|++|+++ ..|+.++..
T Consensus 215 ~~~Drv~vm~~G~iv-~~g~~~e~~ 238 (254)
T d1g6ha_ 215 NYIDHLYVMFNGQII-AEGRGEEEI 238 (254)
T ss_dssp GGCSEEEEEETTEEE-EEEESHHHH
T ss_pred HhCCEEEEEeCCEEE-EEecHHHHh
Confidence 999999999999984 678777654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.5e-48 Score=391.97 Aligned_cols=208 Identities=20% Similarity=0.289 Sum_probs=179.6
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc---------c
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP---------N 491 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~---------~ 491 (652)
++.+|+++||+++|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +
T Consensus 3 sd~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred cceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 4568999999999999999999999999999999999999999999999999999999999999998631 2
Q ss_pred eecccccccCCCCCCHHHHHHHhhhhc-----cHHHHHHHHhhC-CCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAEDW-----RIDDIKGLLGRC-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~~-----~~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
...+.+...+++.+||.||+......+ ....+...+..+ ++ .+..++++.+|||||||||+|||||+.+|++|
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lL 161 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPKLL 161 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH-HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCh-HHHHhCchhhCCHHHHHHHHHHHHHHhCCCEe
Confidence 334445556788999999998764321 122344555554 34 46779999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||||+|||+.++..+.++|++. +.|||+||||++++.++||||++|++|+++ ..|++++..+
T Consensus 162 llDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~~ 228 (240)
T d1ji0a_ 162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELLD 228 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHHT
T ss_pred eecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHhc
Confidence 999999999999999999998865 469999999999999999999999999998 5699998765
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-48 Score=388.38 Aligned_cols=194 Identities=27% Similarity=0.390 Sum_probs=171.2
Q ss_pred EEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
+|+++||+++|+. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 5899999999963 24799999999999999999999999999999999999999999999998863
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhh---------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~---------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.++++|+ ..+++.+||+||+.+.... ...+++.++|+.+++.....+++|.+|||||||||+|||
T Consensus 81 r~~~ig~v~Q~--~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 81 RRDKIGFVFQQ--FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (230)
T ss_dssp HHHHEEEECTT--CCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hcceEEEEecc--hhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHh
Confidence 2466665 4678899999999875421 123457889999999766789999999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
||+.+|+||||||||++||+.++..+++.|.++ +.|||+||||++++ ++||||++|++|+|++
T Consensus 159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~ 225 (230)
T d1l2ta_ 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER 225 (230)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred hhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998754 56999999999987 6899999999999984
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-48 Score=395.41 Aligned_cols=206 Identities=24% Similarity=0.345 Sum_probs=182.7
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (652)
.|+++||+++|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence 389999999999999999999999999999999999999999999999999999999999998862
Q ss_pred ---------cceecccccccCCCCCCHHHHHHHhhh---h----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHH
Q 006275 490 ---------PNYFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553 (652)
Q Consensus 490 ---------~~~~~~~~~~~~~~~~tv~e~~~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~ 553 (652)
.++++|+ +.+++.+||.+|+.+... . ...+.+.++++.+++.....+++|.+|||||||||+
T Consensus 82 ~~~~~~r~~ig~vfQ~--~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~ 159 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQH--FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 159 (258)
T ss_dssp HHHHHHHHHEEEECSS--CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred hHHHHHhcceEEEEec--hhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHH
Confidence 1345554 467889999999987531 1 123457889999999766678899999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 554 LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||||+.+|+||||||||+|||+.++..+.+.|++. +.|||+||||++++..+||||++|++|+|+ ..|++++.+.
T Consensus 160 iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv-~~g~~~ev~~ 238 (258)
T d1b0ua_ 160 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQVFG 238 (258)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred HHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999999999999999999998764 469999999999999999999999999998 5699999876
Q ss_pred hc
Q 006275 631 SF 632 (652)
Q Consensus 631 ~~ 632 (652)
..
T Consensus 239 ~P 240 (258)
T d1b0ua_ 239 NP 240 (258)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.7e-47 Score=380.97 Aligned_cols=206 Identities=22% Similarity=0.333 Sum_probs=181.6
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------cceec
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFE 494 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~~ 494 (652)
.|+++||+++|+++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence 489999999999999999999999999999999999999999999999999999999999998863 23555
Q ss_pred ccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
|. ..+++++|+.||+.+..... ..+.+..+++.+++ .+..++++.+|||||||||+|||||+.+|+|||||
T Consensus 82 q~--~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLD 158 (238)
T d1vpla_ 82 EE--AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL-GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD 158 (238)
T ss_dssp TT--CCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-GGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ec--cccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 53 46778999999997654211 12346778888998 46789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcC
Q 006275 569 EPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFS 633 (652)
Q Consensus 569 EPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~ 633 (652)
|||+|||+.+++.+.++|++. +.|||++|||++++..+||||++|++|+++ +.|++++..+...
T Consensus 159 EPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~~~~~ 225 (238)
T d1vpla_ 159 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKERYK 225 (238)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhccC
Confidence 999999999999999999764 569999999999999999999999999998 5699998865433
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-47 Score=388.14 Aligned_cols=204 Identities=20% Similarity=0.280 Sum_probs=178.5
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-----------c
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----------N 491 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-----------~ 491 (652)
.+|+++||+++|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +
T Consensus 3 ~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~ 82 (254)
T d1g6ha_ 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 82 (254)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred ceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999998731 2
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh-------------------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHH
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED-------------------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~-------------------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv 552 (652)
+++|+ +.+++.+||.||+..+... ...+++.++++.+++. ...++++.+|||||||||
T Consensus 83 ~v~Q~--~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~Qrv 159 (254)
T d1g6ha_ 83 RTFQT--PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLV 159 (254)
T ss_dssp ECCCC--CGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHH
T ss_pred ccCCc--cccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc-hhccCchhhCCcHHHHHH
Confidence 44444 4567889999999864210 1124577889999984 678999999999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 553 ~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+|||||+.+|++|||||||+|||+.++..+.+.|++. +.|||+||||++++.++||||++|++|+|+. .|++++..
T Consensus 160 ~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~-~g~~~e~~ 238 (254)
T d1g6ha_ 160 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEEEI 238 (254)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHHHH
T ss_pred HHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE-EecHHHHh
Confidence 9999999999999999999999999999999998754 5699999999999999999999999999984 58777654
Q ss_pred h
Q 006275 630 T 630 (652)
Q Consensus 630 ~ 630 (652)
+
T Consensus 239 ~ 239 (254)
T d1g6ha_ 239 K 239 (254)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-47 Score=381.40 Aligned_cols=202 Identities=28% Similarity=0.397 Sum_probs=176.6
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q~ 169 (652)
|++ ++.++|++..+ ||||++. ||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+||||||+
T Consensus 3 l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~ 78 (240)
T d2onka1 3 LKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp EEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccc
Confidence 677 67999998765 7999995 68999999999999999999999999999999999742 369999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+++.+||+||+..++.. .+..+.++++.++++.+|+.
T Consensus 79 ~~l~~~ltV~enl~~~l~~-----------------------------------------~~~~~~~~~v~~~l~~~gl~ 117 (240)
T d2onka1 79 YALFPHLSVYRNIAYGLRN-----------------------------------------VERVERDRRVREMAEKLGIA 117 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTT-----------------------------------------SCHHHHHHHHHHHHHTTTCT
T ss_pred hhhcccchhhHhhhhhhcc-----------------------------------------cCHHHHHHHHHHHHHhcCcH
Confidence 9998999999998643210 11223456788999999996
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCe
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ 325 (652)
+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++++ +.|+|||+||||++++.++|||
T Consensus 118 -~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adr 196 (240)
T d2onka1 118 -HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADE 196 (240)
T ss_dssp -TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSE
T ss_pred -hhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCE
Confidence 68999999999999999999999999999999999999999999999988764 3589999999999999999999
Q ss_pred EEEEcCCeEEEecCChHHHHH
Q 006275 326 IVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 326 ii~l~~G~~~~~~g~~~~~~~ 346 (652)
|++|++|++ .+.|+..++..
T Consensus 197 i~vm~~G~i-i~~G~~~el~~ 216 (240)
T d2onka1 197 VAVMLNGRI-VEKGKLKELFS 216 (240)
T ss_dssp EEEEETTEE-EEEECHHHHHH
T ss_pred EEEEECCEE-EEEecHHHHhc
Confidence 999999998 57898877654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.7e-47 Score=382.27 Aligned_cols=214 Identities=23% Similarity=0.394 Sum_probs=168.8
Q ss_pred CceEEEeEEEEeCCe---eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------e
Q 006275 96 SGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~---~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~ 162 (652)
+.|+++||+|+|+++ .+|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 89 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 89 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH
Confidence 459999999999753 499999999999999999999999999999999999999999999998642 5
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|+||+|+|.+ ++.||+||+..+....... ..+..... .....+.
T Consensus 90 i~~v~Q~~~l-f~~tv~eni~~g~~~~~~~----~~~~~~~~-------------------------------~~~~~~~ 133 (251)
T d1jj7a_ 90 VAAVGQEPQV-FGRSLQENIAYGLTQKPTM----EEITAAAV-------------------------------KSGAHSF 133 (251)
T ss_dssp EEEECSSCCC-CSSBHHHHHHCSCSSCCCH----HHHHHHHH-------------------------------HHTCHHH
T ss_pred hhhccccccc-cCcchhhhhhhhhcccchH----HHHHHHHH-------------------------------HHHHHHH
Confidence 9999999987 5679999997432110000 00000000 0001111
Q ss_pred hhhc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 006275 243 MPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (652)
Q Consensus 243 l~~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~ 316 (652)
+..+ |+. ...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|||+||||+
T Consensus 134 i~~l~~g~~-~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l 212 (251)
T d1jj7a_ 134 ISGLPQGYD-TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL 212 (251)
T ss_dssp HHTSTTGGG-CBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH
T ss_pred HHhccccch-hhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH
Confidence 2222 222 234556789999999999999999999999999999999999999999888743 489999999999
Q ss_pred HHHHhhcCeEEEEcCCeEEEecCChHHHHHHH
Q 006275 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~~~ 348 (652)
+.+ ..||||++|++|++ +..|++++++...
T Consensus 213 ~~~-~~aDrI~vl~~G~i-v~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 213 SLV-EQADHILFLEGGAI-REGGTHQQLMEKK 242 (251)
T ss_dssp HHH-HTCSEEEEEETTEE-EEEECHHHHHHHT
T ss_pred HHH-HhCCEEEEEECCEE-EEECCHHHHHhCC
Confidence 988 56999999999998 5789999887543
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.4e-47 Score=380.80 Aligned_cols=210 Identities=24% Similarity=0.433 Sum_probs=166.5
Q ss_pred eEEEeEEEEeC--CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eEEE
Q 006275 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (652)
Q Consensus 98 i~v~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i~~ 165 (652)
|+++||+|+|+ ++++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.+. +|+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 79999999995 35699999999999999999999999999999999999999999999998542 5999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
|+|+|++ ++.||+||+...... .. .+.+...++.+ .+ .+.+..
T Consensus 82 v~Q~~~l-f~~Ti~eNi~~~~~~-~~----~~~~~~~~~~~---------------------------~~----~~~i~~ 124 (241)
T d2pmka1 82 VLQDNVL-LNRSIIDNISLANPG-MS----VEKVIYAAKLA---------------------------GA----HDFISE 124 (241)
T ss_dssp ECSSCCC-TTSBHHHHHCTTSTT-CC----HHHHHHHHHHH---------------------------TC----HHHHTT
T ss_pred Eeccccc-CCccccccccccCcc-cc----HHHHHHHHHHH---------------------------hh----HHHHHh
Confidence 9999987 578999999632111 00 00111111100 00 111111
Q ss_pred c--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006275 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (652)
+ |+. ...+..+.+|||||||||+|||||+.+|+|||||||||+||+.+.+.+.+.|++ .++|+|+|||+++.+ .
T Consensus 125 ~~~~~~-t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~-~ 202 (241)
T d2pmka1 125 LREGYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV-K 202 (241)
T ss_dssp STTGGG-SBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGG-T
T ss_pred hhcchh-hhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-H
Confidence 1 221 233445789999999999999999999999999999999999999999888754 489999999999988 5
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
.||+|++|++|++ +..|++++++..
T Consensus 203 ~~D~i~vl~~G~I-v~~G~~~ell~~ 227 (241)
T d2pmka1 203 NADRIIVMEKGKI-VEQGKHKELLSE 227 (241)
T ss_dssp TSSEEEEEETTEE-EEEECHHHHHHS
T ss_pred hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 7999999999998 588999888754
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-46 Score=377.38 Aligned_cols=206 Identities=24% Similarity=0.450 Sum_probs=172.8
Q ss_pred EEEEeeeeEeC--CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cce
Q 006275 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (652)
Q Consensus 425 i~~~~v~~~y~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (652)
|+++||+|+|+ .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 78999999995 457999999999999999999999999999999999999999999999999873 245
Q ss_pred ecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCCh----------hhhccCcCCCCHHHHHHHHHHHHHccCC
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqrqrv~LAral~~~p 562 (652)
++|+. ..++.|+++|+.+.......+++...++..++.. ......+.+|||||||||+|||||+++|
T Consensus 82 v~Q~~---~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 82 VLQDN---VLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp ECSSC---CCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred Eeccc---ccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence 66643 3467899999988765445555555444444311 1234556799999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcCCc
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFSPF 635 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~~~ 635 (652)
+||||||||++||+.+++.+.+.|++. +.|||+||||++.+. .||||++|++|+|++ .|++++.++....+
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~-~G~~~ell~~~~~~ 231 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVE-QGKHKELLSEPESL 231 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEE-EECHHHHHHSTTCH
T ss_pred chhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhCCCCH
Confidence 999999999999999999999999875 459999999999885 599999999999985 69999988765443
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.9e-47 Score=384.34 Aligned_cols=212 Identities=21% Similarity=0.371 Sum_probs=164.1
Q ss_pred ceEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
+|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ .+|||
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 4899999999965 569999999999999999999999999999999999999999999998752 35999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
|+|+|.+ +..||+||+.......... +.+...++.+. ..+.+..
T Consensus 81 v~Q~~~l-f~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~-------------------------------~~~~~~~ 124 (242)
T d1mv5a_ 81 VSQDSAI-MAGTIRENLTYGLEGDYTD----EDLWQVLDLAF-------------------------------ARSFVEN 124 (242)
T ss_dssp ECCSSCC-CCEEHHHHTTSCTTSCSCH----HHHHHHHHHHT-------------------------------CTTTTTS
T ss_pred Ecccccc-CCcchhhheecccccccch----hhHHHHHHHHH-------------------------------hhhhhcc
Confidence 9999987 4569999985322110000 00000000000 0000001
Q ss_pred c--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006275 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (652)
+ ++.+ .....+.+|||||||||+|||||+.+|+|||||||||+||+.++..+.+.|++ .++|||+||||++.+.
T Consensus 125 ~~~~~~~-~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~- 202 (242)
T d1mv5a_ 125 MPDQLNT-EVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV- 202 (242)
T ss_dssp STTGGGC-EESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-
T ss_pred Ccccccc-cccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-
Confidence 0 1111 22234578999999999999999999999999999999999998888887753 4899999999999885
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
.||||++|++|++ ++.|++++++..
T Consensus 203 ~~D~i~vl~~G~i-v~~G~~~eLl~~ 227 (242)
T d1mv5a_ 203 DADKIYFIEKGQI-TGSGKHNELVAT 227 (242)
T ss_dssp HCSEEEEEETTEE-CCCSCHHHHHHH
T ss_pred hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 5999999999998 588999888754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.3e-46 Score=369.87 Aligned_cols=203 Identities=25% Similarity=0.403 Sum_probs=178.7
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceeccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~~ 496 (652)
+++ ++.++|++..+ ||||++. ||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 3 l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~ 78 (240)
T d2onka1 3 LKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp EEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccc
Confidence 677 67899988765 8999995 6899999999999999999999999999999999998873 2566665
Q ss_pred ccccCCCCCCHHHHHHHhhhhcc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 497 QAEALDLDKTVLETVAEAAEDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
..+++.+||+||+.++..... .+.+.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 --~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~-~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts 155 (240)
T d2onka1 79 --YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155 (240)
T ss_dssp --CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTS
T ss_pred --hhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcH-hhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccc
Confidence 467889999999998754322 34588999999994 78999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcCCc
Q 006275 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFSPF 635 (652)
Q Consensus 573 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~~~ 635 (652)
+||+.++..+.+.|+++ +.|||+||||++++.++||||++|++|+++. .|++++.++...++
T Consensus 156 ~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~-~G~~~el~~~~~~~ 221 (240)
T d2onka1 156 AVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELFSAKNGE 221 (240)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHSCCSS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-EecHHHHhcCCCHH
Confidence 99999999999988754 5699999999999999999999999999984 69999998766554
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.3e-46 Score=375.55 Aligned_cols=212 Identities=24% Similarity=0.408 Sum_probs=168.0
Q ss_pred ceEEEeEEEEeCCe--eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eEE
Q 006275 97 GVKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i~ 164 (652)
.|+++||+|+|+++ ++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.+. .|+
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 92 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 92 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence 49999999999753 599999999999999999999999999999999999999999999998532 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++++ +..|+++|+..+...... .+.+.++++.+ .+. +.++
T Consensus 93 ~v~Q~~~l-~~~ti~~n~~~~~~~~~~----~~~i~~a~~~~---------------------------~l~----~~i~ 136 (253)
T d3b60a1 93 LVSQNVHL-FNDTVANNIAYARTEEYS----REQIEEAARMA---------------------------YAM----DFIN 136 (253)
T ss_dssp EECSSCCC-CSSBHHHHHHTTTTSCCC----HHHHHHHHHTT---------------------------TCH----HHHH
T ss_pred EEeecccc-CCcchhhhhhhcCcccCC----HHHHHHHHHHH---------------------------hHH----HHHH
Confidence 99999977 677999998633111000 01111111111 011 1111
Q ss_pred hc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006275 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (652)
.+ |+.+ ...+.+.+|||||||||+|||||+.+|+|||||||||+||+.++..+.+.|++ .++|||+||||++.+
T Consensus 137 ~l~~gl~t-~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~- 214 (253)
T d3b60a1 137 KMDNGLDT-IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI- 214 (253)
T ss_dssp HSTTGGGS-BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGT-
T ss_pred hccccchh-hhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-
Confidence 11 3322 23445789999999999999999999999999999999999999999988753 489999999999988
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
..||+|++|++|++ +..|++++++..
T Consensus 215 ~~~D~v~vl~~G~I-v~~G~~~eLl~~ 240 (253)
T d3b60a1 215 EQADEIVVVEDGII-VERGTHSELLAQ 240 (253)
T ss_dssp TTCSEEEEEETTEE-EEEECHHHHHHH
T ss_pred HhCCEEEEEECCEE-EEECCHHHHHhC
Confidence 57999999999998 588999888754
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.9e-46 Score=375.59 Aligned_cols=203 Identities=22% Similarity=0.431 Sum_probs=167.6
Q ss_pred EEEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cce
Q 006275 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (652)
Q Consensus 424 ~i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (652)
+|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 5899999999964 67999999999999999999999999999999999999999999999998763 245
Q ss_pred ecccccccCCCCCCHHHHHHHhhh-hccHHHHHHHHhhCCCCh------hhh----ccCcCCCCHHHHHHHHHHHHHccC
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKA------DML----DRKVSLLSGGEKARLAFCKFMVKP 561 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~-~~~~~~~~~~L~~~~l~~------~~~----~~~~~~LSgGqrqrv~LAral~~~ 561 (652)
++|+. .+ ++.|+++|+..... ......+...++..++.. ... ...+.+|||||||||+|||||+++
T Consensus 81 v~Q~~--~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~ 157 (242)
T d1mv5a_ 81 VSQDS--AI-MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (242)
T ss_dssp ECCSS--CC-CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred Ecccc--cc-CCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 66643 34 45699999976532 233444444444433321 111 234457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|+||||||||++||+.++..+.+.|++. +.|||+||||++.+.. ||||++|++|+|+ ..|++++.++.
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-~D~i~vl~~G~iv-~~G~~~eLl~~ 227 (242)
T d1mv5a_ 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQIT-GSGKHNELVAT 227 (242)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH-CSEEEEEETTEEC-CCSCHHHHHHH
T ss_pred CCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEEECCEEE-EECCHHHHHhC
Confidence 9999999999999999999999999875 5699999999999865 9999999999998 57999998864
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-45 Score=372.91 Aligned_cols=204 Identities=24% Similarity=0.470 Sum_probs=167.5
Q ss_pred cEEEEEeeeeEeCCe---eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 423 SVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~---~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
+.|+++||+|+|+++ .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 89 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 89 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH
Confidence 349999999999753 5999999999999999999999999999999999999999999999999873
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhh-ccHHHH---------HHHHhhC--CCChhhhccCcCCCCHHHHHHHHHHHH
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAED-WRIDDI---------KGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~-~~~~~~---------~~~L~~~--~l~~~~~~~~~~~LSgGqrqrv~LAra 557 (652)
.++++|+. .+ ++.|+.+|+.++... ...... ...+..+ ++ ....++.+.+|||||||||+||||
T Consensus 90 i~~v~Q~~--~l-f~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~-~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 90 VAAVGQEP--QV-FGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGY-DTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp EEEECSSC--CC-CSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGG-GCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred hhhccccc--cc-cCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccc-hhhHhccCccCChhHceEEEEeec
Confidence 23555543 33 567999999876321 111111 1233333 22 123456778999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
|+++|+||||||||++||+.++..+.+.|.+. +.|||+||||++.+. .||||++|++|+|++ .|++++.++..
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~-~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIRE-GGTHQQLMEKK 242 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEE-EECHHHHHHHT
T ss_pred cccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhCC
Confidence 99999999999999999999999999999754 469999999999885 499999999999984 69999987754
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=9.3e-46 Score=373.89 Aligned_cols=214 Identities=26% Similarity=0.429 Sum_probs=167.7
Q ss_pred CceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
..|+++||+|+|++ .++|+||||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 15 g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 94 (255)
T d2hyda1 15 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 94 (255)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhee
Confidence 35999999999975 469999999999999999999999999999999999999999999999853 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+||+|++++ +..||+||+..+.... . .+++.++++.+ .+...+..+-
T Consensus 95 ~~v~Q~~~l-f~~Ti~eNi~~g~~~~-~----~~~~~~al~~~---------------------------~l~~~i~~lp 141 (255)
T d2hyda1 95 GLVQQDNIL-FSDTVKENILLGRPTA-T----DEEVVEAAKMA---------------------------NAHDFIMNLP 141 (255)
T ss_dssp EEECSSCCC-CSSBHHHHHGGGCSSC-C----HHHHHHHHHHT---------------------------TCHHHHHTST
T ss_pred eeeeccccC-CCCCHHHHHhccCcCC-C----HHHHHHHHHHh---------------------------CCHHHHHhcc
Confidence 999999987 5789999996332110 0 01111111111 0111111111
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (652)
. |+.+. ......+|||||||||+|||||+.+|+|||||||||+||+.++..+.+.|++ .++|+|+|||+++.+ .
T Consensus 142 ~--gl~t~-i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~-~ 217 (255)
T d2hyda1 142 Q--GYDTE-VGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI-T 217 (255)
T ss_dssp T--GGGCB-CCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGT-T
T ss_pred c--cccch-hcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-H
Confidence 1 22222 2234678999999999999999999999999999999999999999988753 488999999999988 5
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
.||+|++|++|++ +..|++++++..
T Consensus 218 ~~D~ii~l~~G~i-v~~G~~~eLl~~ 242 (255)
T d2hyda1 218 HADKIVVIENGHI-VETGTHRELIAK 242 (255)
T ss_dssp TCSEEEEEETTEE-EEEECHHHHHHT
T ss_pred hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 7999999999998 578999887754
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.2e-45 Score=371.08 Aligned_cols=205 Identities=25% Similarity=0.420 Sum_probs=175.0
Q ss_pred cEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------c
Q 006275 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (652)
Q Consensus 423 ~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (652)
+-|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 15 g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 94 (255)
T d2hyda1 15 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 94 (255)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhee
Confidence 34999999999975 57999999999999999999999999999999999999999999999998863 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChh----------hhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
+|++|+ + ..++.|++||+.++......+++.++++.+++... .....+.+||||||||++|||||++
T Consensus 95 ~~v~Q~--~-~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 95 GLVQQD--N-ILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp EEECSS--C-CCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred eeeecc--c-cCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 455554 2 44678999999887665566777777777776321 1123456799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
+|+||||||||++||+.++..+.+.|.+. +.|||+||||++.+. .||||++|++|+|++ .|++++.++..
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~-~G~~~eLl~~~ 243 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVE-TGTHRELIAKQ 243 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEE-EECHHHHHHTT
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhCC
Confidence 99999999999999999999999999876 459999999999885 599999999999985 69999987653
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.6e-45 Score=370.97 Aligned_cols=205 Identities=24% Similarity=0.403 Sum_probs=172.0
Q ss_pred EEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cc
Q 006275 424 VVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (652)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 92 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 92 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence 3999999999974 46999999999999999999999999999999999999999999999998863 23
Q ss_pred eecccccccCCCCCCHHHHHHHhh-hhccHHHHHHHHhhCCCCh----------hhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~-~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
|++|+. ..+..|+.+|+..+. .....+++.+.++..++.. ......+.+|||||||||+|||||++
T Consensus 93 ~v~Q~~---~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 93 LVSQNV---HLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp EECSSC---CCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEeecc---ccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 555543 345789999998764 2344555655555554421 12345667899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcC
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFS 633 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~ 633 (652)
+|+||||||||++||+.++..+.+.|+++ +.|||+||||++.+. .||||++|++|+|++ .|++++.++...
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~-~G~~~eLl~~~~ 242 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLAQHG 242 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHHHTS
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhCCc
Confidence 99999999999999999999999999875 569999999999885 699999999999984 699999887543
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.1e-43 Score=358.35 Aligned_cols=207 Identities=24% Similarity=0.357 Sum_probs=157.5
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCC
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~T 177 (652)
|+++|++ |.++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|+|++|+++++ ..|
T Consensus 39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---~i~~v~Q~~~l~-~~t 112 (281)
T d1r0wa_ 39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---RVSFCSQFSWIM-PGT 112 (281)
T ss_dssp -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---CEEEECSSCCCC-SEE
T ss_pred EEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---EEEEEecccccc-Cce
Confidence 4555544 3678999999999999999999999999999999999999999999999875 699999999874 569
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCC
Q 006275 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (652)
Q Consensus 178 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (652)
|+||+..+..... ..+...++.+ .....+..+.+.. .....+.+
T Consensus 113 v~eni~~~~~~~~------~~~~~~~~~~---------------------------~~~~~i~~l~~~~---~~~~~~~~ 156 (281)
T d1r0wa_ 113 IKENIIFGVSYDE------YRYKSVVKAC---------------------------QLQQDITKFAEQD---NTVLGEGG 156 (281)
T ss_dssp HHHHHTTTSCCCH------HHHHHHHHHT---------------------------TCHHHHTTSTTGG---GCEECTTC
T ss_pred eeccccccccccc------hHHHHHHHHH---------------------------HhHHHHHhchhhh---hhhhhhhc
Confidence 9999863211000 0000111100 0111111111111 12334556
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH-Hc--cCCCeEEEEecCHHHHHhhcCeEEEEcCCeE
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LG--KQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~-L~--~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~ 334 (652)
.+|||||||||+|||||+.+|+||||||||++||+.+...+++. +. ..++|+|+|||+++.+ +.||||++|++|++
T Consensus 157 ~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i 235 (281)
T d1r0wa_ 157 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSS 235 (281)
T ss_dssp TTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEE
T ss_pred cCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEE
Confidence 78999999999999999999999999999999999999998865 33 2588999999999987 67999999999998
Q ss_pred EEecCChHHHHHHH
Q 006275 335 RTYEGNYSQYVLEK 348 (652)
Q Consensus 335 ~~~~g~~~~~~~~~ 348 (652)
.+.|+++++....
T Consensus 236 -~~~Gt~~eL~~~~ 248 (281)
T d1r0wa_ 236 -YFYGTFSELQSLR 248 (281)
T ss_dssp -EEEECHHHHHHHC
T ss_pred -EEECCHHHHhccC
Confidence 5789999876543
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.7e-42 Score=342.45 Aligned_cols=199 Identities=25% Similarity=0.402 Sum_probs=169.3
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc----------ce
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------NY 492 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------~~ 492 (652)
.+|+++||+++| +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++.. .+
T Consensus 2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhcee
Confidence 368999998765 699999999999999999999999999999999976 689999999987632 23
Q ss_pred ecccccccCCCCCCHHHHHHHhhhhc-cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc-------CCCe
Q 006275 493 FEQNQAEALDLDKTVLETVAEAAEDW-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK-------PSTL 564 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~-------~p~l 564 (652)
+.+. ....+..++.+++....... ..+.+.++++.+++. +..++++.+|||||||||+|||||++ +|+|
T Consensus 77 ~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~l 153 (231)
T d1l7vc_ 77 LSQQ--QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 153 (231)
T ss_dssp ECSC--CCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred eecc--ccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCH-hHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCE
Confidence 3333 23345678888887654432 345577888999985 67899999999999999999999997 7799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||||||+|||+.++..+.++|++. +.|||+||||++++.++|||+++|++|+++ ..|++++.++
T Consensus 154 lllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv-~~G~~~ev~~ 221 (231)
T d1l7vc_ 154 LLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVLT 221 (231)
T ss_dssp EEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEEC-CCSBHHHHSC
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EECCHHHHhC
Confidence 9999999999999999999998764 569999999999999999999999999997 5799888754
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.1e-42 Score=341.35 Aligned_cols=199 Identities=28% Similarity=0.328 Sum_probs=166.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eEEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i~~v 166 (652)
.|+++|++++| +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|.+. ..+|+
T Consensus 3 il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~ 77 (231)
T d1l7vc_ 3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYL 77 (231)
T ss_dssp EEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEE
T ss_pred EEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceee
Confidence 58999997654 699999999999999999999999999999999976 6899999998642 48999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|.....+..++++++..... .....+.+.++++.+
T Consensus 78 ~~~~~~~~~~~v~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~ 113 (231)
T d1l7vc_ 78 SQQQTPPFATPVWHYLTLHQH--------------------------------------------DKTRTELLNDVAGAL 113 (231)
T ss_dssp CSCCCCCSSCBHHHHHHHHCS--------------------------------------------CTTCHHHHHHHHHHT
T ss_pred eccccCCccccHHHHhhhccc--------------------------------------------hhhHHHHHHHHHHhc
Confidence 998776677788887642100 011123455667778
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHcc-------CCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCH
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~-------~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd~ 316 (652)
++. +..++++.+|||||||||+|||||++ +|+||||||||+|||+.++..+.+++ ++.|+|||+||||+
T Consensus 114 ~l~-~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl 192 (231)
T d1l7vc_ 114 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDL 192 (231)
T ss_dssp TCT-TTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCH
T ss_pred CCH-hHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 886 56788999999999999999999997 77999999999999999999888776 45799999999999
Q ss_pred HHHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
+++.++||||++|++|++ .+.|+.++...
T Consensus 193 ~~~~~~~dri~vl~~G~i-v~~G~~~ev~~ 221 (231)
T d1l7vc_ 193 NHTLRHAHRAWLLKGGKM-LASGRREEVLT 221 (231)
T ss_dssp HHHHHHCSBCCBEETTEE-CCCSBHHHHSC
T ss_pred HHHHHHCCEEEEEECCEE-EEECCHHHHhC
Confidence 999999999999999998 57788777643
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.6e-41 Score=332.10 Aligned_cols=187 Identities=22% Similarity=0.328 Sum_probs=149.1
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----ceEEEEeccCc
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFE 171 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----~~i~~v~Q~~~ 171 (652)
.|+++|++|+|+ +++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ .+++|++|++.
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~ 80 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII 80 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeeccc
Confidence 389999999995 579999999999999999999999999999999999999999999999853 36999999988
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcc
Q 006275 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (652)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (652)
++...|+.+++..... +. .....+..+.+.++.+++.
T Consensus 81 ~~~~~t~~~~l~~~~~---------------~~--------------------------~~~~~~~~~~~~l~~~~~~-- 117 (200)
T d1sgwa_ 81 VPRKISVEDYLKAVAS---------------LY--------------------------GVKVNKNEIMDALESVEVL-- 117 (200)
T ss_dssp CCTTSBHHHHHHHHHH---------------HT--------------------------TCCCCHHHHHHHHHHTTCC--
T ss_pred CCCCcCHHHHHHHHHH---------------hc--------------------------CCccCHHHHHHHHHHcCCc--
Confidence 8778899998742100 00 0001122344556666653
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEE
Q 006275 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIV 327 (652)
Q Consensus 252 ~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ii 327 (652)
..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|. +.+.+||.++|++ .+||++.
T Consensus 118 ~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~ 193 (200)
T d1sgwa_ 118 DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNE 193 (200)
T ss_dssp CTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEE
T ss_pred ccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhh
Confidence 2456789999999999999999999999999999999999999988876653 3455555556654 4799999
Q ss_pred EEcC
Q 006275 328 ETEM 331 (652)
Q Consensus 328 ~l~~ 331 (652)
+|+.
T Consensus 194 ~l~~ 197 (200)
T d1sgwa_ 194 NLHK 197 (200)
T ss_dssp EGGG
T ss_pred heee
Confidence 8853
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.7e-41 Score=342.37 Aligned_cols=196 Identities=23% Similarity=0.344 Sum_probs=154.8
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCC
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 504 (652)
|.++|++ |.++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+ ..|++|.. . .+.
T Consensus 39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~---i~~v~Q~~--~-l~~ 110 (281)
T d1r0wa_ 39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR---VSFCSQFS--W-IMP 110 (281)
T ss_dssp -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC---EEEECSSC--C-CCS
T ss_pred EEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCE---EEEEeccc--c-ccC
Confidence 4455544 35689999999999999999999999999999999999999999999999984 46777653 2 345
Q ss_pred CCHHHHHHHhhhhccHHHHHHHHhhCCCC----------hhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCC
Q 006275 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFK----------ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574 (652)
Q Consensus 505 ~tv~e~~~~~~~~~~~~~~~~~L~~~~l~----------~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~L 574 (652)
.|+++|+.++.. .........++.+++. .....+.+.+|||||||||+|||||+++|+||||||||++|
T Consensus 111 ~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~L 189 (281)
T d1r0wa_ 111 GTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYL 189 (281)
T ss_dssp EEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSS
T ss_pred ceeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccC
Confidence 799999987542 2222333333333321 11223456689999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 575 DIPSKEMLEEA-ISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 575 D~~~~~~l~~~-l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|+.++..+.+. +... +.|+|+|||+++.+ +.||||++|++|+|+. .|++++..+.
T Consensus 190 D~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~-~Gt~~eL~~~ 247 (281)
T d1r0wa_ 190 DVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSYF-YGTFSELQSL 247 (281)
T ss_dssp CHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEEE-EECHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEEE-ECCHHHHhcc
Confidence 99999988775 3433 46999999999887 4699999999999984 6999987653
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4e-40 Score=322.06 Aligned_cols=182 Identities=26% Similarity=0.412 Sum_probs=150.3
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-----ceeccccc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQNQA 498 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-----~~~~~~~~ 498 (652)
.|+++||+++|+ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .|.+| .
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~--~ 78 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE--E 78 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS--S
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEee--c
Confidence 489999999995 689999999999999999999999999999999999999999999999988742 23333 3
Q ss_pred ccCCCCCCHHHHHHHhhh----hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCC
Q 006275 499 EALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574 (652)
Q Consensus 499 ~~~~~~~tv~e~~~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~L 574 (652)
..++...|+.+++..... .....++.+.++.+++. + .++++.+|||||||||+|||||+.+|+||||||||+||
T Consensus 79 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gL 156 (200)
T d1sgwa_ 79 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-D-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 156 (200)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-C-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTS
T ss_pred ccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc-c-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCccccc
Confidence 345567899999876532 23456677888888874 2 45778999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---Cc-eEEEEecCHHHHHhhccEEEEEe
Q 006275 575 DIPSKEMLEEAISEY---KG-TVITVSHDRYFVKQIVNRVVEVK 614 (652)
Q Consensus 575 D~~~~~~l~~~l~~~---~~-tvi~vsHd~~~i~~~~drvi~l~ 614 (652)
|+.++..+.+.|.+. ++ +||+++|++ .+||++.+|+
T Consensus 157 D~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~ 196 (200)
T d1sgwa_ 157 DEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLH 196 (200)
T ss_dssp CTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhhee
Confidence 999999998888765 23 444444554 4799998875
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.63 E-value=1.1e-17 Score=157.57 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=101.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccc-----eec--ccccccCCCCCCHHHHHHHhhhhccHHHHH
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-----YFE--QNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~-----~~~--~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~ 524 (652)
+++|+||||||||||++.|+|.++|..|.+.+.+.+.... +.. ............ ....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----- 67 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF---------FTSK----- 67 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETT---------CCCS-----
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhh---------hhhh-----
Confidence 5899999999999999999999999999998876543110 000 000000000000 0000
Q ss_pred HHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCC--CCHHHHHHHHHHHHhcCceEEEEecCHHH
Q 006275 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH--LDIPSKEMLEEAISEYKGTVITVSHDRYF 602 (652)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~--LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 602 (652)
...++++. +....++|+|++++.++++++..+|++|++|||... .+......+.+++++.+.++|+++|+...
T Consensus 68 ~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~ 142 (178)
T d1ye8a1 68 KLVGSYGV-----NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV 142 (178)
T ss_dssp SEETTEEE-----CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC
T ss_pred hhhhhhhc-----CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH
Confidence 00011111 122235899999999999999999999999997544 34556667777777777899999999764
Q ss_pred HHhhccEEEEEeCCEEEee
Q 006275 603 VKQIVNRVVEVKGSNLQDY 621 (652)
Q Consensus 603 i~~~~drvi~l~~g~i~~~ 621 (652)
..+|+++..+.+|++...
T Consensus 143 -~~~~~~i~~~~~~~i~~v 160 (178)
T d1ye8a1 143 -HPLVKEIRRLPGAVLIEL 160 (178)
T ss_dssp -SHHHHHHHTCTTCEEEEC
T ss_pred -HHhhceEEEEeCCEEEEE
Confidence 457899999999998754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.62 E-value=6.4e-18 Score=159.31 Aligned_cols=78 Identities=10% Similarity=0.009 Sum_probs=66.1
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCC--CCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCeE
Q 006275 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH--LDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~--LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~ 334 (652)
..++|+|+++|.++++++..+|++|++|||... .+......+.++++..+.++|+++|+... ..+|+++..+.+|++
T Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 79 YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHHHHHHTCTTCEE
T ss_pred hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-HHhhceEEEEeCCEE
Confidence 356799999999999999999999999997544 45666778888898889999999999865 468899888888887
Q ss_pred E
Q 006275 335 R 335 (652)
Q Consensus 335 ~ 335 (652)
.
T Consensus 158 ~ 158 (178)
T d1ye8a1 158 I 158 (178)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=1.9e-09 Score=109.20 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=63.5
Q ss_pred CCCCCChHHHHHHHHHHH----HccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEE-
Q 006275 256 LVASFSSGWQMRMSLGKI----LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVE- 328 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAra----L~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~ii~- 328 (652)
....+|+|||+...++.. ....+.++++|||-++|+|.....|.++|++ .+.-||++||.+.++ +.+|+++.
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~-~~~d~~~~v 294 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVM-EAADLLHGV 294 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGG-GGCSEEEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-HhcccEEEE
Confidence 467899999999877665 3457789999999999999999999988853 467899999999999 56898854
Q ss_pred -EcCCeE
Q 006275 329 -TEMGVS 334 (652)
Q Consensus 329 -l~~G~~ 334 (652)
+++|..
T Consensus 295 ~~~~g~s 301 (308)
T d1e69a_ 295 TMVNGVS 301 (308)
T ss_dssp EESSSCE
T ss_pred EEeCCEE
Confidence 555643
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.97 E-value=2.1e-09 Score=108.99 Aligned_cols=73 Identities=33% Similarity=0.503 Sum_probs=61.4
Q ss_pred CcCCCCHHHHHHHHHHHHH----ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEE
Q 006275 540 KVSLLSGGEKARLAFCKFM----VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEV 613 (652)
Q Consensus 540 ~~~~LSgGqrqrv~LAral----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l 613 (652)
....+|+|||+.+.++..+ ..++.++++|||-++|++...+.+.+.|++.. .-||++||...++. .+|+++.+
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~v 294 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHGV 294 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEEE
Confidence 4568999999998776653 45689999999999999999999999998653 47999999998885 58998765
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=2e-08 Score=105.60 Aligned_cols=73 Identities=19% Similarity=0.388 Sum_probs=60.3
Q ss_pred CCCCCChHHHHHHHHHHHH----ccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEEE
Q 006275 256 LVASFSSGWQMRMSLGKIL----LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAraL----~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~ii~ 328 (652)
++..||||||.+++||-.+ ..++++++||||+++||+..+..+.++|++ .+.-+|++||++..+ ..||+++.
T Consensus 329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~-~~ad~~~~ 407 (427)
T d1w1wa_ 329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALVG 407 (427)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEEE
T ss_pred hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH-HhcccEEE
Confidence 4578899999998877543 467889999999999999999999888743 355799999999988 56898775
Q ss_pred E
Q 006275 329 T 329 (652)
Q Consensus 329 l 329 (652)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=3.9e-08 Score=103.38 Aligned_cols=74 Identities=28% Similarity=0.429 Sum_probs=61.3
Q ss_pred cCcCCCCHHHHHHHHHHHHH----ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--c-eEEEEecCHHHHHhhccEEE
Q 006275 539 RKVSLLSGGEKARLAFCKFM----VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--G-TVITVSHDRYFVKQIVNRVV 611 (652)
Q Consensus 539 ~~~~~LSgGqrqrv~LAral----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vsHd~~~i~~~~drvi 611 (652)
+....||||||.+++||..+ ..++++++||||+++||+..+..+.++|.+.. . -+|++||+..++. .+|+++
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEE
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEE
Confidence 45567999999998776544 46788999999999999999999999997652 2 5999999998775 589988
Q ss_pred EE
Q 006275 612 EV 613 (652)
Q Consensus 612 ~l 613 (652)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 66
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.10 E-value=1.7e-05 Score=76.35 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=34.8
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHH----HHHHccCCCeEEEEecCHHHHH
Q 006275 276 QDPDLLLLDEPTNHLDLDTIEWL----EGYLGKQDVPMVIISHDRAFLD 320 (652)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l----~~~L~~~g~tvIivsHd~~~l~ 320 (652)
.+..++|+||+..|=|+.....+ .+.|.+.+..++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 45569999999999999765433 4455566889999999987664
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=5.1e-05 Score=73.37 Aligned_cols=45 Identities=18% Similarity=0.068 Sum_probs=31.8
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHH----HHHH-ccCCCeEEEEecCHHHH
Q 006275 275 LQDPDLLLLDEPTNHLDLDTIEWL----EGYL-GKQDVPMVIISHDRAFL 319 (652)
Q Consensus 275 ~~~p~iLLLDEPts~LD~~~~~~l----~~~L-~~~g~tvIivsHd~~~l 319 (652)
+.+..++|+||+..|=++.....+ .+.| .+.+..+|++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 344569999999999998765443 3333 44567889999987644
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.79 E-value=0.00013 Score=69.84 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=34.5
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHH----HHhcCceEEEEecCHHHHH
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEA----ISEYKGTVITVSHDRYFVK 604 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~----l~~~~~tvi~vsHd~~~i~ 604 (652)
+.+..++|+||+..|=|+.....+... |.+.+..++++||..+...
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 455679999999999998876554443 3344668999999987654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=3e-05 Score=75.02 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=31.5
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHH-HHh---cC-ceEEEEecCHHHH
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEA-ISE---YK-GTVITVSHDRYFV 603 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~---~~-~tvi~vsHd~~~i 603 (652)
+.+..++|+||+..|=++.....+..+ +.. .. ..+|++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 455679999999999998877665443 322 22 3688888876544
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=8e-06 Score=75.49 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=29.1
Q ss_pred eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.+++.++++.+| +++|+|+|||||||+|.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 456778888877 9999999999999999999643
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=1.2e-05 Score=74.26 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=27.0
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++.++.+.+| ++.|+|+|||||||+|.+|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 56677777665 899999999999999999963
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.93 E-value=0.00023 Score=67.90 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=26.4
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~ 155 (652)
+|..++++|++|+|||||++.|.|...-..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5889999999999999999999998766667665
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.92 E-value=0.00017 Score=66.29 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.5
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCCCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
|.++.|+||+|||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999877653
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.00022 Score=63.81 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p 476 (652)
+++|+|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999875543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00013 Score=65.41 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987544
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.85 E-value=0.00073 Score=59.35 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECce
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (652)
+++.|+|++|||||||.+.|..-. .|.+.++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEechH
Confidence 478899999999999999875432 245555543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.80 E-value=0.00029 Score=63.40 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.|.+++|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999765
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.79 E-value=0.00024 Score=65.29 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~~p 476 (652)
|.++.|+||+|||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999876653
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.00013 Score=65.89 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=25.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEE
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i 154 (652)
.+.|+||+|+|||||++.++..+....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 589999999999999999998887655444
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.73 E-value=0.00039 Score=62.48 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=28.0
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECc
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (652)
.|.++.|+||+||||||+.+.|+..+... .+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEecH
Confidence 58999999999999999999999876321 355554
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.73 E-value=0.00042 Score=65.99 Aligned_cols=34 Identities=38% Similarity=0.449 Sum_probs=26.3
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~ 482 (652)
+|..++++|++|+|||||++.|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 4788999999999999999999998766667664
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.66 E-value=0.0002 Score=64.64 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPR 477 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~ 477 (652)
+++|+|++|||||||+..|+..+...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 78999999999999999888776543
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.00014 Score=65.69 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
.+.|+||+|+|||||++.+++.+....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 588999999999999999999886655444
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.59 E-value=0.00023 Score=68.15 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~ 155 (652)
+|..++++|++|+|||||++.|.|...-..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4789999999999999999999998766667665
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.55 E-value=0.00032 Score=63.20 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=22.5
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
.+++|+|++|||||||+..|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999988877654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00047 Score=61.79 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998754
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.54 E-value=0.00049 Score=61.82 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
++|-++.|+|+.||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998544
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.00058 Score=61.15 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=24.2
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.48 E-value=0.00066 Score=60.88 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.1
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
++|-.++|.||.||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.46 E-value=0.00062 Score=61.33 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.7
Q ss_pred CEEEEECCCCccHHHHHHHHHcCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
..++|+||.|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999765
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.40 E-value=0.00071 Score=60.90 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
..|+|+||.|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999866
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.0091 Score=57.57 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.3
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHh
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIM 471 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~ 471 (652)
.+|+++.|.|+.|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999987665
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.38 E-value=0.00075 Score=60.49 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=24.0
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.+|-+|.|+|++||||||+.+.|+..+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.35 E-value=0.007 Score=54.74 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.6
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
.-+.+.++|+.||||||+.+.++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998853
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.022 Score=54.75 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.3
Q ss_pred ECCCEEEEECCCCccHHHHHHHHH
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~ 144 (652)
.+|+++.|.|+.|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999987664
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0011 Score=62.17 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
+|.++.|+||+|+|||||++.|.-..|
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999986654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.00097 Score=58.58 Aligned_cols=23 Identities=48% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.24 E-value=0.0012 Score=59.04 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.3
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.24 E-value=0.0011 Score=59.41 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=24.2
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
++|-.+.|+||.||||||+.+.|+.-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999987653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.22 E-value=0.00047 Score=65.89 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=22.5
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~ 482 (652)
+|.+++++|++|+|||||++.|.|-.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4778899999999999999999998766667664
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.21 E-value=0.00098 Score=60.90 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
++||.|+.|||||||.+.|.-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998543
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0012 Score=62.07 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=23.7
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+|.++.|+||+|||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999998876554
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.20 E-value=0.0011 Score=58.20 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.4
Q ss_pred CEEEEECCCCccHHHHHHHHHc
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G 145 (652)
+++.|+|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.16 E-value=0.0013 Score=58.66 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999874
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.15 E-value=0.0011 Score=60.43 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++||.|+.|||||||.+.|.-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.14 E-value=0.0014 Score=59.11 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.0
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.+++|.|+.||||||+++.|+-.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999986543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.11 E-value=0.0012 Score=58.83 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+||.||||||+.+.|+-.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.11 E-value=0.0011 Score=58.99 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.0
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.++.|+||.||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999997653
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.001 Score=60.75 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+|-++.|+|+.||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0015 Score=57.29 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.0085 Score=57.92 Aligned_cols=24 Identities=38% Similarity=0.637 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.-+-+.||.|||||+|.+.|+..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 347799999999999999999765
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.95 E-value=0.0018 Score=58.19 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p~ 477 (652)
.+++|.|+.||||||+.+.|+..+...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999998665433
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.91 E-value=0.0019 Score=57.24 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
.++.|+||.||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.90 E-value=0.0016 Score=59.87 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|+|+.|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999863
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.90 E-value=0.0017 Score=59.82 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++|+|+.|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999963
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.85 E-value=0.0038 Score=56.59 Aligned_cols=23 Identities=48% Similarity=0.677 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++||+|+.|+|||||++.|+|-.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999998753
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.85 E-value=0.0017 Score=57.85 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.+.|+||.||||||+.+.|+--+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37799999999999999997543
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.81 E-value=0.024 Score=55.03 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=26.4
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
=|+.|.++-|.||.|||||||+..++....
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 478999999999999999999988887543
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.78 E-value=0.0021 Score=60.82 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
+++|+|+.|||||||++.|+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.77 E-value=0.0016 Score=65.49 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=32.0
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~ 484 (652)
-++.|.-+.|+|+.|||||||+++|++.++|..=-|++.
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHhCCCEEEEeeccccchHHHHHHhhhcccccceeecc
Confidence 345667799999999999999999999998865555553
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0016 Score=59.34 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.2
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999998654
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.70 E-value=0.0023 Score=58.68 Aligned_cols=23 Identities=48% Similarity=0.657 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+.|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999976653
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.69 E-value=0.0027 Score=58.09 Aligned_cols=26 Identities=42% Similarity=0.514 Sum_probs=23.2
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
|+|-.+.|+||.||||||+.+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 46888999999999999999999953
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.64 E-value=0.0029 Score=56.83 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.62 E-value=0.0022 Score=58.89 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEECCCCccHHHHHHHHHcCCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
++|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0027 Score=59.25 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=28.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~ 170 (652)
++||.|+.|||||||.+.|+-.+....- .-....+.+++++-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~----~~~~~~~~vi~~D~ 45 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV----DYRQKQVVILSQDS 45 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS----CGGGCSEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhcc----ccCCCceEEEeccc
Confidence 6899999999999999999766532110 00122466777764
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0036 Score=57.27 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.6
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
|++|+++.|.||.|||||||+.-++..
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999999877754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.60 E-value=0.0022 Score=57.54 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
-+++|+|+.|||||||++.|.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.59 E-value=0.0031 Score=56.61 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.56 E-value=0.0027 Score=58.31 Aligned_cols=25 Identities=32% Similarity=0.250 Sum_probs=21.7
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
..+++|+||.||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998643
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.0029 Score=58.99 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++||.|+.|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887655
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.0029 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.003 Score=57.70 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.2
Q ss_pred CEEEEECCCCccHHHHHHHHHcCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
..+.|+||+|+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999988654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.51 E-value=0.0026 Score=57.58 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++|+|+.|+|||||++.|+|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.51 E-value=0.0031 Score=55.16 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++|+|+.|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999854
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.49 E-value=0.0032 Score=59.53 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.49 E-value=0.003 Score=55.68 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|+|+.|||||||++.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999997753
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.46 E-value=0.0024 Score=57.39 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.++|||+.|+|||||++.|.|-..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999988653
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.45 E-value=0.0035 Score=56.86 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.+||+|..|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.45 E-value=0.0032 Score=57.98 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.4
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
++|+||+|||||||++.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987653
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.44 E-value=0.0033 Score=57.93 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+.|+||+|||||||.+.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999986543
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.44 E-value=0.0032 Score=55.09 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++.|+|+.|||||||++.+.+-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987643
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.44 E-value=0.0034 Score=54.95 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++|+|+.|+|||||++.|.+-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987643
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.42 E-value=0.0022 Score=58.42 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=20.3
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
|||+|+.++|||||++.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998753
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.41 E-value=0.0031 Score=57.03 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.++|+|+.|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.41 E-value=0.0037 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+++|+|..|+|||||++.|+|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999863
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.40 E-value=0.0035 Score=55.23 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++|||..|+|||||++.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998764
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.004 Score=56.84 Aligned_cols=25 Identities=12% Similarity=0.413 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
...+.|+||+|+|||||++.|....
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999988543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.0036 Score=55.30 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=22.1
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
|=.++|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3368999999999999999999874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0039 Score=56.01 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
+++|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.36 E-value=0.004 Score=56.24 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+|+|+|+.|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.0042 Score=54.80 Aligned_cols=25 Identities=44% Similarity=0.640 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
|=+++|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.34 E-value=0.0028 Score=63.66 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=27.4
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCCCCCC
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~ 151 (652)
+..|.-+.|+|+.|||||||+++|++.++|..
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 34455689999999999999999999998754
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.32 E-value=0.0026 Score=57.89 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~ 473 (652)
|||+|+.++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.0042 Score=55.79 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+|+|+|..|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.31 E-value=0.0039 Score=55.66 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+.|+|+.||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999998654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.30 E-value=0.0028 Score=58.28 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+++.++.|+||.||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.23 E-value=0.019 Score=59.05 Aligned_cols=49 Identities=24% Similarity=0.265 Sum_probs=34.9
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006275 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (652)
Q Consensus 267 Rv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (652)
--+|..+|=++||+++..|.. |+++.....+.- ..|.-|+-+-|--+-+
T Consensus 217 ~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa-~tGhlV~tTlHa~~a~ 265 (401)
T d1p9ra_ 217 ARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS-LTGHLVMSTLHTNTAV 265 (401)
T ss_dssp HHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSSSH
T ss_pred HHHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHH-hcCCeEEEEeccCchH
Confidence 345777888999999999987 677776665443 3477777777754433
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.22 E-value=0.004 Score=55.97 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.+.|+|+.||||||+.+.|+-.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999843
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.0045 Score=56.84 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
-.++.|+||.||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998755
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.20 E-value=0.0043 Score=57.20 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++|+|+.|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999863
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.19 E-value=0.0032 Score=57.00 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.6
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+||+|..|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.16 E-value=0.0059 Score=54.17 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.++|+|+.|+|||||++.|.|...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 488999999999999999998654
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.15 E-value=0.0034 Score=56.79 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+||+|+.|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999864
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.13 E-value=0.0062 Score=55.58 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.7
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
|++|+++.|.||+|||||||...++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999877764
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.12 E-value=0.0051 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997643
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.10 E-value=0.0045 Score=55.74 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999987653
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.10 E-value=0.0039 Score=57.01 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
++.|+||.||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998543
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.08 E-value=0.005 Score=54.91 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+.|+|+.||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.0053 Score=56.14 Aligned_cols=23 Identities=39% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
++.|+||.||||||+.+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.08 E-value=0.0055 Score=54.39 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|+|+.|||||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999998854
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.08 E-value=0.0052 Score=55.28 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999987663
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.0048 Score=56.85 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.++|+|+.|||||||++.|.|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.04 E-value=0.0053 Score=55.59 Aligned_cols=25 Identities=36% Similarity=0.318 Sum_probs=21.4
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHc
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G 145 (652)
+.-+++.++|+.||||||+.+-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.99 E-value=0.0054 Score=54.74 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+.|+|+.||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6688999999999999998554
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.98 E-value=0.0058 Score=55.89 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
..++.|+||.||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.97 E-value=0.0052 Score=56.16 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=18.9
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 006275 125 KVGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~ 144 (652)
++||.|+.||||||+++.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.92 E-value=0.0047 Score=59.24 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=22.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.+.|.||.|||||||.+.|++.+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 488999999999999999999874
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.90 E-value=0.0068 Score=55.28 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.8
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
++|=++.|+||.||||||+.+.|+--
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999854
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.0036 Score=56.30 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|+|+.++|||||++.|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.86 E-value=0.0066 Score=55.02 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
++.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999654
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.84 E-value=0.0058 Score=54.84 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.+.|+|+.||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999997544
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.81 E-value=0.0068 Score=55.69 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+++++|..|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.81 E-value=0.0048 Score=56.49 Aligned_cols=24 Identities=33% Similarity=0.279 Sum_probs=21.7
Q ss_pred CEEEEECCCCccHHHHHHHHHcCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
-+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.77 E-value=0.0067 Score=54.19 Aligned_cols=23 Identities=48% Similarity=0.548 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++|+|..|||||||++.|.|..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999853
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.76 E-value=0.007 Score=54.06 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
=+++|+|..|||||||++.|.+-.
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998853
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.76 E-value=0.0073 Score=56.47 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=21.8
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
++.+++++||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999998766665543
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.74 E-value=0.0073 Score=55.34 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
-.++.|+||.||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999998866
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.008 Score=55.84 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+|.+++|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998644
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.66 E-value=0.0075 Score=53.77 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+.|+|+.||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998655
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.63 E-value=0.0082 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.63 E-value=0.0074 Score=55.05 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
++||+|+.||||||+.+.|.-+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 7899999999999999998643
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.0057 Score=60.80 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
++||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 689999999999999988877653
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.004 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++|+|..++|||||++.|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999864
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.59 E-value=0.0065 Score=55.42 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.59 E-value=0.0062 Score=55.73 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
=+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.58 E-value=0.0081 Score=55.94 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+++|-||.||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999999654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.57 E-value=0.0084 Score=55.56 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+++|.||.||||||+.+.|+-.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998654
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.57 E-value=0.0078 Score=54.28 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.+.|+||.||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.57 E-value=0.0078 Score=58.14 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++|+|++|+|||||++.|+|..
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999999964
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.55 E-value=0.0077 Score=58.19 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEECCCCccHHHHHHHHHcCCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
++|+|..|+|||||+|.|.|...
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCc
Confidence 89999999999999999999753
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.53 E-value=0.0083 Score=55.70 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 006275 125 KVGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~ 144 (652)
++||.|+.||||||+++++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999886
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.51 E-value=0.0033 Score=55.45 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++|+|..|+|||||++.|+|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999863
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.49 E-value=0.0093 Score=53.84 Aligned_cols=23 Identities=43% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.48 E-value=0.0089 Score=55.85 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
++|-+++|-|+-||||||+++.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.47 E-value=0.0093 Score=54.72 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++.++|..|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.37 E-value=0.003 Score=55.77 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+++|+|+.|+|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.35 E-value=0.007 Score=55.48 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.9
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+.+.++.|+||.||||||+.+.|+.-+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998755
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.0063 Score=57.36 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998763
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.011 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++.|+||.||||||..+.|+--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998644
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.30 E-value=0.011 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998655
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.29 E-value=0.011 Score=53.44 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.+.|+||.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998643
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.25 E-value=0.011 Score=55.23 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.7
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHc
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G 145 (652)
+++|+++.|.|+.|||||||+.-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999999999987653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.23 E-value=0.0095 Score=54.98 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
-++|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.23 E-value=0.012 Score=54.94 Aligned_cols=40 Identities=38% Similarity=0.540 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~ 170 (652)
++.+++++||+|+||||.+-=|+-.+. ..| .+|+++.=+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g--------~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG--------KKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTT--------CCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC--------CcEEEEEecc
Confidence 567999999999999998776665432 122 3577776553
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.23 E-value=0.0092 Score=57.11 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECc
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (652)
.+.|.||.|||||||.+.|++.+.. +-+.++.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 4779999999999999999998743 3444544
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.23 E-value=0.0099 Score=53.79 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~ 146 (652)
+||||...+|||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 999999999999999999974
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.011 Score=55.07 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.8
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++|-+++|-|+-||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999987754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.15 E-value=0.012 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.0
Q ss_pred CEEEEECCCCccHHHHHHHHHcCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
=.+.|+||.||||||+.+.|+-.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999643
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.13 E-value=0.012 Score=52.41 Aligned_cols=30 Identities=37% Similarity=0.224 Sum_probs=25.7
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
..++|.+++|.|+=|||||||.|.|+.-+-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 346899999999999999999999886543
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.13 E-value=0.012 Score=55.03 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
+|.+++|-|+-||||||+++.|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 699999999999999999999986654
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.11 E-value=0.28 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.7
Q ss_pred CCEEEEECCCCccHHHHHHHHHcC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
..+++|+|.-|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999988643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.11 E-value=0.011 Score=52.75 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 488999999999999999875
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.09 E-value=0.011 Score=52.65 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++++|+.|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.09 E-value=0.011 Score=52.28 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+++|+|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988653
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.05 E-value=0.24 Score=47.59 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
..+++|+|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.03 E-value=0.012 Score=52.03 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++++|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.01 E-value=0.013 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|.||.||||||+-+.|+.-+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999997654
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.0093 Score=56.12 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=24.3
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998774
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.99 E-value=0.017 Score=51.59 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~ 146 (652)
++|+|+.|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.96 E-value=0.013 Score=54.72 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.0
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
++|-++-|.|.+|||||||.+.|.-.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999998743
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.013 Score=54.45 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
++||+|..||||||.++++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.014 Score=54.07 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.3
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+|.+++|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.012 Score=58.34 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=30.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCcc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~ 172 (652)
++||.|++||||||+.+.|..++.-.. ...++..++++-+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~-------~~~~v~~Is~D~F~ 122 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP-------EHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST-------TCCCEEEEEGGGGB
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc-------CCCceEEEeeeeeE
Confidence 689999999999999999987764221 12356777777544
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.025 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|..|+|||||++.+.+-
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999987763
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.93 E-value=0.013 Score=54.19 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
++||+|..||||||+.+.+.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=0.013 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++.|+||.||||||..+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.91 E-value=0.015 Score=54.24 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=21.0
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
...++.++||||+||||.+--|+..+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999877776554
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.91 E-value=0.0093 Score=55.95 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=19.5
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+..+++++||||+||||.+-=|+-.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999976655543
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.90 E-value=0.015 Score=54.30 Aligned_cols=41 Identities=24% Similarity=0.178 Sum_probs=30.1
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCCC--eeEEEECceec
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--GGEVLLGEHNV 488 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~--~G~i~~~g~~~ 488 (652)
++|-++-|+|.+|||||||.+.|...+.-. --.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 468899999999999999999997543211 12567777554
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.86 E-value=0.014 Score=54.15 Aligned_cols=23 Identities=43% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|-||.||||||+-+.|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999998655
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.85 E-value=0.015 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+||+|+..||||||++.|.|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.85 E-value=0.014 Score=52.00 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.9
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~ 146 (652)
++++|+.|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 899999999999999988653
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.82 E-value=0.014 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+.|.||+|+||||++++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.82 E-value=0.014 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|+|+.|+|||||++.+.+-.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999997643
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.81 E-value=0.0079 Score=60.32 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.8
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.-++||+|+.|||||||+..|...+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.013 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988753
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.024 Score=50.43 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
.++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999997664
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.77 E-value=0.014 Score=52.31 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998765
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.015 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|||+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999987664
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.76 E-value=0.012 Score=55.37 Aligned_cols=25 Identities=44% Similarity=0.517 Sum_probs=22.2
Q ss_pred EEEECCCCccHHHHHHHHHcCCCCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQEEPD 150 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~~p~ 150 (652)
+.+.||.|+||||+.++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 7899999999999999999876544
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.76 E-value=0.018 Score=53.44 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.3
Q ss_pred EECCCEEEEECCCCccHHHHHHHHH
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~ 144 (652)
+++|+++.|.|++|+|||||+.-++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999999985443
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.75 E-value=0.018 Score=54.17 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.2
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
+++|.++.|.|++|||||||+.-++-.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 889999999999999999999877643
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.75 E-value=0.014 Score=53.76 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
.|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.019 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.72 E-value=0.013 Score=58.72 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
-++||.||.|||||||+..|.+.+
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 379999999999999999997543
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.70 E-value=0.017 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997554
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.66 E-value=0.015 Score=54.49 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=32.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHH-HhhccEEEEEe
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFV-KQIVNRVVEVK 614 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i-~~~~drvi~l~ 614 (652)
++.++++||- ..+-......+...+.... ..+|++++....+ ..+.+|...+.
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~i~ 164 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 164 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCcccccc
Confidence 5779999995 3444555666777777654 3667777776544 23345554443
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.018 Score=51.12 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998775
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.60 E-value=0.019 Score=54.43 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.+.|.||+|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999998753
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.012 Score=55.10 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
.+++++||||+||||.+-=|+..+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999997766665443
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.57 E-value=0.014 Score=52.09 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++++|+.|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.55 E-value=0.016 Score=51.20 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987664
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.54 E-value=0.018 Score=59.24 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEECCCCccHHHHHHHHHcCCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
+||+|..|+|||||+|.|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 89999999999999999999643
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.51 E-value=0.02 Score=53.46 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=24.0
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
=|++|.++-|.||.|||||||..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 388999999999999999999987753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.50 E-value=0.019 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++.|+||-||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999998654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.02 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+++|+|+.|+|||||++.+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4889999999999999988764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.46 E-value=0.024 Score=50.04 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=18.1
Q ss_pred EEEECCCCccHHHHHHHHHc
Q 006275 126 VGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G 145 (652)
++|+|+.|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.46 E-value=0.019 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++.|+||.||||||+.+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998754
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.45 E-value=0.02 Score=53.47 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.9
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHc
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G 145 (652)
+++|+++.|.|+.|+|||||+.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999887763
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.42 E-value=0.022 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++++|..|+|||||++.+++..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37899999999999999877643
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.41 E-value=0.019 Score=53.56 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=27.0
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
+|.+++|-|+-||||||+.+.|.-.+.. .|.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~ 33 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 33 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence 6899999999999999999999877754 3443
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.39 E-value=0.02 Score=53.90 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred EECCCEEEEECCCCccHHHHHHHHH
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~ 144 (652)
+++|+++.|.||.|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999999987553
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.018 Score=51.47 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
++.|+|+.|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4889999999999999987654
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.37 E-value=0.02 Score=52.60 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.35 E-value=0.022 Score=50.41 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+++++|+.|+|||||++.+++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987654
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.018 Score=54.22 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=23.9
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHc
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G 145 (652)
|++|.++.|.|++|||||||...++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999987763
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.34 E-value=0.02 Score=53.38 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=27.9
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~ 170 (652)
...+++++||+|+||||.+-=|+-.+. .. ..+++++.=+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~-~~--------g~kV~lit~Dt 48 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK-GK--------GRRPLLVAADT 48 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH-HT--------TCCEEEEECCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HC--------CCcEEEEeccc
Confidence 345889999999999998887775443 11 23567765553
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.31 E-value=0.022 Score=51.45 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~ 146 (652)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 889999999999999998864
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.30 E-value=0.02 Score=54.23 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+.|.||+|+||||+.++|+..+.
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.022 Score=50.58 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|+|+.|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58899999999999999998864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.018 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.28 E-value=0.011 Score=58.01 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=25.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~ 170 (652)
++||.|++||||||+.+.|...+... ..+...+.++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~---------~v~~~iI~~Ds 42 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE---------GVKAVSIEGDA 42 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH---------TCCEEEEEGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhc---------CCCeEEEeCCC
Confidence 79999999999999999987654321 23456777775
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.02 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|||+.|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3789999999999999987754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.24 E-value=0.024 Score=50.42 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=25.6
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
.++|.++.|.|+=|||||||.|.++.-+-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 46899999999999999999999987653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.24 E-value=0.02 Score=51.70 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.24 E-value=0.011 Score=58.01 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
++||.|++||||||+.+.|..++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999998877653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.018 Score=50.98 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.22 E-value=0.02 Score=53.65 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+.|.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999998754
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.21 E-value=0.02 Score=53.66 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+.|.||+|+||||++++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.20 E-value=0.019 Score=53.72 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=16.5
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
...+++++||+|+||||.+-=|+..+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999776666544
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.021 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999888653
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.16 E-value=0.025 Score=52.38 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.8
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHH
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLI 470 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l 470 (652)
|++|+++.|.|++|+|||||..-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 889999999999999999997544
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.10 E-value=0.022 Score=51.34 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
.++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997775
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.08 E-value=0.015 Score=54.53 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=27.3
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~ 170 (652)
+-.++++|||+|+||||.+-=|+-.+. . ...+|+++.=+.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~-~--------~~~kV~lit~Dt 49 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV-D--------EGKSVVLAAADT 49 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-H--------TTCCEEEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCceEEEeecc
Confidence 445789999999999998766664332 1 123577776653
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.07 E-value=0.022 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.0
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.+.++.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 45678999999999999999887544
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.06 E-value=0.022 Score=53.68 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006275 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (652)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (652)
+--|+++| ...|+.+.+...+. ++...++.+|++-..++.+
T Consensus 95 D~~ilVvd-a~~g~~~~~~~~~~-~~~~~~~p~iivlNK~D~~ 135 (227)
T d1g7sa4 95 DLAILIVD-INEGFKPQTQEALN-ILRMYRTPFVVAANKIDRI 135 (227)
T ss_dssp SEEEEEEE-TTTCCCHHHHHHHH-HHHHTTCCEEEEEECGGGS
T ss_pred ceEEEEEe-cccCcccchhHHHH-HhhcCCCeEEEEEECccCC
Confidence 44577777 77889988875554 4555677777777777654
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.025 Score=50.22 Aligned_cols=24 Identities=46% Similarity=0.711 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.++|+|..|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 378999999999999999988643
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.031 Score=49.90 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.++|+|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 378999999999999999987653
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.02 Score=50.95 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
++.|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.03 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|||..|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.03 E-value=0.023 Score=53.85 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.+.++.|.||.|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 34679999999999999999887543
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.02 E-value=0.024 Score=58.34 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++|+|+.|+|||||++.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999854
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.01 E-value=0.024 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
++||+|..||||||..+.+..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 7899999999999999998644
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.033 Score=49.71 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++.|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58899999999999999998754
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.94 E-value=0.028 Score=49.67 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.93 E-value=0.027 Score=49.92 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998874
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.93 E-value=0.017 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+++|+|+.|+|||||++.+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=0.022 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.024 Score=50.22 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
++.|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999998764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.029 Score=49.33 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|..|+|||||++.+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4799999999999999988754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.024 Score=50.15 Aligned_cols=21 Identities=48% Similarity=0.586 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
++.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999988765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.033 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999887754
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.82 E-value=0.022 Score=53.56 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLEKPR 477 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~~p~ 477 (652)
+-+.||.|+||||+.++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 6799999999999999999876544
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.80 E-value=0.031 Score=52.45 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.7
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+++|..+.|.|++|||||||..-++--
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999998766543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.023 Score=50.89 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
++.|+|+.|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6889999999999999887653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.75 E-value=0.024 Score=53.40 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEECCCCccHHHHHHHHHcCCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
+.+.||.|+||||+.++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.74 E-value=0.027 Score=49.85 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.9
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
.++|||..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.74 E-value=0.032 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.4
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+++.|.|+.|+|||||..-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999998777753
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.72 E-value=0.026 Score=49.65 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.026 Score=50.29 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|+.|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999977654
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.69 E-value=0.028 Score=51.44 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.69 E-value=0.028 Score=49.76 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
.++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.66 E-value=0.033 Score=52.29 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.3
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHh
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIM 471 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~ 471 (652)
+++|+++.|.||.|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999877553
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.66 E-value=0.032 Score=49.56 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999988763
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.62 E-value=0.019 Score=53.61 Aligned_cols=38 Identities=34% Similarity=0.449 Sum_probs=26.8
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~ 170 (652)
.++++|||+|+||||.+-=|+-.+. ..| .+|+++.=+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~-~~g--------~kV~lit~Dt 47 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE-QQG--------KSVMLAAGDT 47 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH-TTT--------CCEEEECCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCC--------CcEEEEeccc
Confidence 5799999999999998776775443 222 3577776553
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.58 E-value=0.033 Score=49.61 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.9
Q ss_pred EEEECCCCccHHHHHHHHHc
Q 006275 126 VGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G 145 (652)
++|+|+.|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999977654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.57 E-value=0.025 Score=50.45 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p 476 (652)
++.|+|+.|+|||||++.+.+-..+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~~ 38 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQSV 38 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5889999999999999999765433
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.57 E-value=0.027 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
++||+|..+||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.53 E-value=0.03 Score=49.24 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=18.3
Q ss_pred EEEECCCCccHHHHHHHHHc
Q 006275 126 VGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G 145 (652)
++|+|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.50 E-value=0.026 Score=55.81 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.9
Q ss_pred CEEEEECCCCccHHHHHHHHHcCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.-+.++||.|||||+|.++|+..+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 346789999999999999999864
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.48 E-value=0.025 Score=56.00 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
-+.++||+|||||+|.|+|+..+
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhhcc
Confidence 35689999999999999999875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.47 E-value=0.029 Score=50.23 Aligned_cols=21 Identities=48% Similarity=0.646 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.029 Score=50.10 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999988764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.037 Score=49.41 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|..|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999887754
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.36 E-value=0.032 Score=54.48 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.36 E-value=0.065 Score=48.39 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=25.7
Q ss_pred eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 439 vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
.++..-+.+ .|.-+.|+|++|+|||||...+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 355555555 788899999999999999877754
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.34 E-value=0.031 Score=49.56 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999997664
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.33 E-value=0.02 Score=51.57 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++++|+.|+|||||++.+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.30 E-value=0.038 Score=50.47 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEECCCCccHHHHHHHHHcCCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
+||+|...+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998643
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.033 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=23.3
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHh
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIM 471 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~ 471 (652)
|++|.++.|.|++|||||||...++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999988776
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.032 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.043 Score=48.99 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.2
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~ 146 (652)
++|+|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 889999999999999988764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.21 E-value=0.033 Score=53.62 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.3
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
+.+|+.+.|.|++|+|||||+.-++-
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 68999999999999999999877763
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.20 E-value=0.034 Score=53.52 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=27.0
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHH
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~ 144 (652)
+-|+++..=+.+|+++.|.|+.|+|||||+.-|+
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3344443337899999999999999999988776
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.15 E-value=0.067 Score=48.27 Aligned_cols=32 Identities=31% Similarity=0.300 Sum_probs=25.6
Q ss_pred eeeeeeEEEECCCEEEEECCCCccHHHHHHHHH
Q 006275 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~ 144 (652)
.++...+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 455555566 77789999999999999997775
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.034 Score=49.30 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
++.|+|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999998875
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.024 Score=50.59 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|+.|+|||||++.+++
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987754
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.13 E-value=0.031 Score=52.14 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~ 170 (652)
...++++|||+|+||||.+-=|+-.+. . ...+|+++.=+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~--------~g~kV~lit~Dt 50 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-K--------KGFKVGLVGADV 50 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-H--------TTCCEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCceEEEEeec
Confidence 345799999999999998776664432 1 123577776653
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=0.032 Score=49.64 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.07 E-value=0.047 Score=48.29 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|..|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999977654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.06 E-value=0.032 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
-+.|.||.|||||+|+++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47899999999999999999764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.05 E-value=0.031 Score=52.51 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+-+.||.|+||||+.+++++.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.041 Score=52.90 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.4
Q ss_pred CEEEEECCCCccHHHHHHHHHcCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.-+.+.||.|||||+|++.|+..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 347899999999999999999865
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.036 Score=49.20 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
++.|+|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998874
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.02 E-value=0.037 Score=55.13 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=21.0
Q ss_pred CCEEEEECCCCccHHHHHHHHHcC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.-++||.|+.|+|||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 347999999999999999998754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.034 Score=49.55 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|..|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999987653
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.00 E-value=0.038 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
++||.|+.|||||||-+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.96 E-value=0.033 Score=50.71 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|+.|+|||||++.+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 389999999999999998764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.85 E-value=0.046 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.9
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~ 146 (652)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 899999999999999987753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.83 E-value=0.024 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.+.|+|+.|+|||||++.+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999986543
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.83 E-value=0.038 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+.|.||.|+||||++++|+..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 5789999999999999998654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.81 E-value=0.043 Score=51.85 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.4
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCCCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEEPD 150 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~p~ 150 (652)
..+.|.||.|+||||+++.|+..++..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcc
Confidence 468899999999999999999877543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.80 E-value=0.041 Score=48.73 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|||+.|+|||||++-+.+-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988853
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.80 E-value=0.041 Score=51.38 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.5
Q ss_pred EEEEECCCCccHHHHHHHH-HcCCCCCCc
Q 006275 125 KVGLVGVNGAGKTTQLRII-AGQEEPDSG 152 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L-~G~~~p~~G 152 (652)
.+.|+|..|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 5899999999999999976 456667777
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.80 E-value=0.028 Score=54.30 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.2
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
..-+.|.||.|+|||+|+++|++.+
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 3448899999999999999999986
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.78 E-value=0.041 Score=54.77 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC---CCCeeEEEEC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLE---KPRGGEVLLG 484 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~---~p~~G~i~~~ 484 (652)
-++||.|+-|+|||||+..|...+ ...=|-|.+|
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecc
Confidence 469999999999999999998643 2334555555
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.041 Score=49.44 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|..|+|||||++.+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999877653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.054 Score=47.92 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.+++||..|+|||||++.+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988843
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.72 E-value=0.04 Score=48.81 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997644
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.72 E-value=0.032 Score=57.30 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.2
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
.++-.+.|.||.||||||++..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3567899999999999999999988653
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.71 E-value=0.038 Score=49.12 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=18.5
Q ss_pred EEEECCCCccHHHHHHHHHc
Q 006275 126 VGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G 145 (652)
++|+|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.68 E-value=0.029 Score=54.78 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=27.2
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+.|-+|++.+|+|+.|+|||||+..|+.-.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999999998743
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.66 E-value=0.033 Score=53.21 Aligned_cols=22 Identities=50% Similarity=0.665 Sum_probs=20.3
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+.+.||.|||||+|+++|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999864
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.042 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.62 E-value=0.043 Score=48.74 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
++.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998765
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.54 E-value=0.036 Score=52.26 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=31.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCHHHH
Q 006275 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFL 319 (652)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~~--g~tvIivsHd~~~l 319 (652)
+..++|+||.=. |.......+...+... ...+|++|++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 456999999854 7888888888777653 34578899887643
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.53 E-value=0.042 Score=53.61 Aligned_cols=30 Identities=30% Similarity=0.282 Sum_probs=27.1
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+.|-+|++.+|+|+.|+|||||+..|+...
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 588999999999999999999999988643
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.49 E-value=0.15 Score=46.76 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=71.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhh
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR 529 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~ 529 (652)
+-.+.+.||+|+||||+.+.++..+.-..- -.+.++.-. +. ......++++++.+.
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~--------~h~D~~~i~------~~----------~~~I~Id~IR~i~~~ 70 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYVEKFPP--------KASDVLEID------PE----------GENIGIDDIRTIKDF 70 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCC--------CTTTEEEEC------CS----------SSCBCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhcccc--------CCCCEEEEe------CC----------cCCCCHHHHHHHHHH
Confidence 456889999999999999998875411000 001111110 10 011235566666665
Q ss_pred CCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecCHHHHHh-h
Q 006275 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQ-I 606 (652)
Q Consensus 530 ~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~--tvi~vsHd~~~i~~-~ 606 (652)
+... + . ..+.+|+|+||+ -.|...+...|...|++... .+|++|++.+-+.. +
T Consensus 71 ~~~~------~---~--------------~~~~KviIId~a-d~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI 126 (198)
T d2gnoa2 71 LNYS------P---E--------------LYTRKYVIVHDC-ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTI 126 (198)
T ss_dssp HTSC------C---S--------------SSSSEEEEETTG-GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred HhhC------c---c--------------cCCCEEEEEeCc-cccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHH
Confidence 4332 1 1 224689999995 66889999999999998753 67889998775443 3
Q ss_pred ccEEEEE
Q 006275 607 VNRVVEV 613 (652)
Q Consensus 607 ~drvi~l 613 (652)
-.|...+
T Consensus 127 ~SRC~~i 133 (198)
T d2gnoa2 127 KSRVFRV 133 (198)
T ss_dssp HTTSEEE
T ss_pred hcceEEE
Confidence 3454444
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.47 E-value=0.031 Score=49.85 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987765
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.44 E-value=0.045 Score=49.04 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
++.|+|..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 589999999999999998876666777743
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.44 E-value=0.045 Score=48.52 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
++.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998754
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.36 E-value=0.05 Score=51.13 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
++||.|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999964
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.33 E-value=0.049 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|||..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999987654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.31 E-value=0.064 Score=51.69 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=25.8
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
=|+.|.++-|.||+|||||||+-.++-...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 578999999999999999999887765543
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.029 Score=49.96 Aligned_cols=22 Identities=41% Similarity=0.444 Sum_probs=18.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|+.|+|||||++.+++-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999977653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.30 E-value=0.05 Score=48.24 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
.+.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.048 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+++++|..|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999977653
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.27 E-value=0.047 Score=50.75 Aligned_cols=42 Identities=12% Similarity=0.263 Sum_probs=29.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHH
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFV 603 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i 603 (652)
+.+++++||.- ++.......+...+.+.. ..+++++++.+-+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 46799999964 455666777777777654 3677888877654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.05 Score=49.02 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999987653
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.23 E-value=0.048 Score=50.69 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=28.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCHHHH
Q 006275 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFL 319 (652)
Q Consensus 278 p~iLLLDEPts~LD~~~~~~l~~~L~~~--g~tvIivsHd~~~l 319 (652)
..++++||. ..+.......|...|.+. ..-+++++++...+
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 469999996 467777778888877643 33456677665543
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.17 E-value=0.048 Score=51.49 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKP 476 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p 476 (652)
..+.|.||.|+||||+++.|+..++.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhc
Confidence 46789999999999999999987754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.14 E-value=0.052 Score=48.02 Aligned_cols=21 Identities=48% Similarity=0.514 Sum_probs=18.3
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999997654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.12 E-value=0.034 Score=49.51 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=9.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|..|+|||||++.+++-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999877753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.12 E-value=0.042 Score=51.74 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=33.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecCHHHH
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFV 603 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~--tvi~vsHd~~~i 603 (652)
.+..++|+||.-. |.......+.+.+.++.. .+|++|++.+-+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 3567999999954 888888889999988754 578899887533
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.07 E-value=0.054 Score=47.99 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
.++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.04 E-value=0.055 Score=48.55 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++++|..|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999977764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.00 E-value=0.06 Score=48.17 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=24.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEE
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i 154 (652)
.+.|+|..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 479999999999999998876666777743
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.94 E-value=0.053 Score=50.38 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=30.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecCHHHH
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFV 603 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~--tvi~vsHd~~~i 603 (652)
+.+++++||. ..+.......+...|.+... -+++++++...+
T Consensus 99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CeEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 3469999997 46778888889999987753 456666665443
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.92 E-value=0.058 Score=48.70 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC--CCCCCeeE
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG--LEKPRGGE 480 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g--~~~p~~G~ 480 (652)
++.|+|..|+|||||++-+.- -..|+-|-
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~ 34 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGI 34 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeeee
Confidence 688999999999999998832 23577773
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.90 E-value=0.056 Score=48.48 Aligned_cols=21 Identities=33% Similarity=0.757 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
++.++|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999976644
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.90 E-value=0.054 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+.|.||.|||||+|.++|+...
T Consensus 43 vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhhcc
Confidence 6799999999999999998753
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.76 E-value=0.028 Score=55.92 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.7
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
..+.|+|+-|+|||||++.+++++||
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35899999999999999999999876
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.68 E-value=0.069 Score=49.06 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
-+||+|...+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 389999999999999999998764
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.61 E-value=0.055 Score=48.98 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|+.|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999877653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.57 E-value=0.062 Score=48.38 Aligned_cols=21 Identities=38% Similarity=0.360 Sum_probs=18.6
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 389999999999999988664
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.057 Score=52.44 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
-+|+|+||-++||||||+.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999864
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.50 E-value=0.058 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+.|.||.|||||+|+++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 8899999999999999999864
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.46 E-value=0.066 Score=49.89 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH-hCCCCCCeeE
Q 006275 451 EKTAIIGPNGCGKSTLLKLI-MGLEKPRGGE 480 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l-~g~~~p~~G~ 480 (652)
-++.|+|++|+|||||++-+ .+-..|+-|-
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCCe
Confidence 36899999999999999876 4455677663
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.41 E-value=0.059 Score=50.45 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.8
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.+++|=|+-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3789999999999999999986553
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.38 E-value=0.064 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++|||.-.||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999975
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.37 E-value=0.067 Score=48.24 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=22.3
Q ss_pred EEEEECCCCccHHHHHHHHHc--CCCCCCc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG--QEEPDSG 152 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G--~~~p~~G 152 (652)
.+.|+|..|+|||||++-+.- ...|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 478999999999999998832 2347777
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.32 E-value=0.054 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.8
Q ss_pred CEEEEECCCCccHHHHHHHHHcCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.+++|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999864
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.064 Score=48.50 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|+.|+|||||++.+.+-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999876643
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.14 E-value=0.13 Score=46.20 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=21.2
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
.-.|.=+.|+|++|+|||||...+..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 33677899999999999998877653
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.10 E-value=0.049 Score=52.72 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.7
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
=++.|.++-|.||+|||||||+-.++...
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence 47899999999999999999987666543
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.04 E-value=0.056 Score=52.09 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
..-+-|.||.|+|||+|.++|++..
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 3447799999999999999999887
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.02 E-value=0.088 Score=47.13 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.0
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
.++++|..|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999986554
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.01 E-value=0.12 Score=46.41 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=23.9
Q ss_pred eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHc
Q 006275 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G 145 (652)
.++..-+ .-.|.=+.|+|++|+|||||.-.+..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3443333 34566799999999999999877663
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.00 E-value=0.079 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g 472 (652)
.++||+|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999954
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.82 E-value=0.093 Score=47.66 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.78 E-value=0.067 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.++|||.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999975
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=89.74 E-value=0.07 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+-+.||.|+|||+|.+.|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 5799999999999999999764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.64 E-value=0.053 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+.|.||.|+||||+++.++..+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 6677999999999999998765
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.44 E-value=0.063 Score=55.74 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
-+-++||+|||||-|.+.|++++
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 37799999999999999999977
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.42 E-value=0.11 Score=49.91 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=28.8
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCC-CCCeeEEEECc
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLE-KPRGGEVLLGE 485 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~-~p~~G~i~~~g 485 (652)
=|+.|.++-|.||+|||||||.-.++... ++..--+++|.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidt 90 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 90 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 47899999999999999999876665543 33222344443
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.26 E-value=0.1 Score=51.01 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.0
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
=.+||||..-+|||||+++|++--.
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~ 35 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVL 35 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCC
Confidence 3599999999999999999998643
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.23 E-value=0.059 Score=51.12 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++.|+||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999998765
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.09 E-value=0.072 Score=55.29 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=28.0
Q ss_pred EEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-ceEEEEeccC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-MKIAFLSQEF 170 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-~~i~~v~Q~~ 170 (652)
+.+|||.|||||-|.+.|++++.- --+..+... ...||+-.+.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC----CCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC--CEEEeecceeeecceeecch
Confidence 889999999999999999997641 133443221 2478887764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.99 E-value=0.17 Score=45.19 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=20.7
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHh
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIM 471 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~ 471 (652)
.-.|.-+.|+|++|+|||||.-.+.
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4467889999999999999886654
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.91 E-value=0.1 Score=48.70 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
.+++|=|+=||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999987654
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.91 E-value=0.087 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+-|.||.|||||+|.++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 6789999999999999999865
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=88.73 E-value=0.045 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKP 476 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p 476 (652)
..+-|+|+-|+|||||++.++++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 45889999999999999999999976
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.70 E-value=0.099 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.++|+|.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999975
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.60 E-value=0.1 Score=48.13 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=18.6
Q ss_pred EEEECCCCccHHHHHHHHHc
Q 006275 126 VGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G 145 (652)
++|+|..++|||||+..|++
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.57 E-value=0.16 Score=45.28 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=22.0
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHH
Q 006275 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~L~ 144 (652)
++-.-.|.=+.|.|++|+|||||.-.+.
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3334567789999999999999986655
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.56 E-value=0.096 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.+||||..-+|||||+++|+|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999863
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=88.22 E-value=0.097 Score=52.75 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=26.7
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.++++..+.+.||.|+||||+.++|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 447888999999999999999999998763
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.13 E-value=0.11 Score=50.15 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=25.9
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+.+-+|++++|+|+.|+|||||+..++.-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 78899999999999999999998777643
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.10 E-value=0.14 Score=49.80 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-CC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEK-PR 477 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~-p~ 477 (652)
.++|+|.-+|||||||++|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 478999999999999999999763 54
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.84 E-value=0.13 Score=46.01 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC---CCCee
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE---KPRGG 479 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~---~p~~G 479 (652)
++.|+|..|+|||||++-+..-. .|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 57899999999999999885432 45555
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.36 E-value=0.14 Score=50.23 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=35.1
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHH---hcCceEEEEecCHHHH
Q 006275 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS---EYKGTVITVSHDRYFV 603 (652)
Q Consensus 541 ~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tvi~vsHd~~~i 603 (652)
...++.-+.+++.-..-+...|-++++-. .|....+.+.++.+ ..+..|+.++...+.-
T Consensus 195 ~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk----~d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E~~ 256 (319)
T d1wxqa1 195 PTKWSQDDLLAFASEIRRVNKPMVIAANK----ADAASDEQIKRLVREEEKRGYIVIPTSAAAELT 256 (319)
T ss_dssp GGGCCHHHHHHHHHHHHHHHSCEEEEEEC----GGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred hhhcCHHHHHHhHHHhhhhcCchhhhccc----ccchhhHHHHHHHHHHhhcCCEEEEecHHHHHH
Confidence 34577778888877777777887777543 12223333333333 4455777777766644
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.90 E-value=0.13 Score=48.04 Aligned_cols=22 Identities=50% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
++.|.|.=|||||||++-|+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999998864
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=86.79 E-value=0.14 Score=49.26 Aligned_cols=19 Identities=47% Similarity=0.639 Sum_probs=17.9
Q ss_pred EEEECCCCccHHHHHHHHH
Q 006275 126 VGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~ 144 (652)
++|+|..|+|||||+..|+
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHH
Confidence 7999999999999999995
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.73 E-value=0.2 Score=48.26 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=25.4
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHc
Q 006275 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~L~G 145 (652)
+.+-+|++.+|+|+.|+|||||+..|+-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 6899999999999999999999777754
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.72 E-value=0.14 Score=49.93 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC------------CCCeeEEEECc
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE------------KPRGGEVLLGE 485 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~------------~p~~G~i~~~g 485 (652)
.+||||...||||||+++|++-- .|.-|.+.+.+
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 59999999999999999999753 44567776543
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.69 E-value=0.17 Score=49.85 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
.+.++||+|+|||.|.+.|+..+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCcchhHHHHHHHHhhcc
Confidence 367999999999999999998763
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.61 E-value=0.16 Score=45.29 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.+.|+|..|+|||||++-+..-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988643
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=86.08 E-value=0.17 Score=46.19 Aligned_cols=21 Identities=38% Similarity=0.408 Sum_probs=19.3
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~ 146 (652)
+||+|..++|||||++.|++.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999864
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.96 E-value=0.19 Score=46.17 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
-+||+|.-++|||||+..|.+
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 389999999999999999963
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.92 E-value=0.18 Score=49.68 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.+.++||.|+|||.|.+.|+-.+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 47899999999999999999764
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.74 E-value=0.23 Score=45.27 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
.+||+|.-.+|||||+..|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998653
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.71 E-value=0.16 Score=47.29 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
++.|.|.=||||||||+-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5789999999999999999875
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.64 E-value=0.18 Score=48.74 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=17.7
Q ss_pred EEEECCCCccHHHHHHHHH
Q 006275 126 VGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~ 144 (652)
+||+|..|||||||+..|+
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999884
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=85.60 E-value=0.18 Score=48.46 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 006275 452 KTAIIGPNGCGKSTLLKLIM 471 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~ 471 (652)
.++|+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999884
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.51 E-value=0.26 Score=48.52 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=27.0
Q ss_pred eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+..-+-...++| ++.++||.|+|||.|.+.|++.+
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444567776 56668999999999999999874
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.46 E-value=0.2 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.+||||-.-+|||||+++|++--
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999763
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.40 E-value=0.27 Score=48.72 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPD 150 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~ 150 (652)
++.|=|+-|+||||+++.|...+...
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~ 33 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGG 33 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred EEEEECCccCCHHHHHHHHHHHhccC
Confidence 57888999999999999999876543
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.37 E-value=0.2 Score=46.27 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+-|.||.|||||-|+.+++-..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4699999999999999997543
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.35 E-value=0.25 Score=47.45 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=25.4
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
=|+.|.++-|.||+|||||||...++...
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHH
Confidence 47899999999999999999988777654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.31 E-value=0.19 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHH---hCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLI---MGLEK 475 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l---~g~~~ 475 (652)
-+||+|+.|||||||.-.| +|...
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 3899999999999999988 45543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.24 E-value=0.21 Score=46.83 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=32.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006275 278 PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (652)
Q Consensus 278 p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (652)
.+|+|+||.=. |.......|...+.+ .+..+|++|++..-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 45999999954 888888888888865 355788899887654
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.96 E-value=0.22 Score=47.93 Aligned_cols=40 Identities=25% Similarity=0.465 Sum_probs=28.1
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeE-EEECc
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE-VLLGE 485 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~-i~~~g 485 (652)
-++.|.++-|.||+|||||||.-.++....-..|. |++|.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDt 96 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA 96 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 47899999999999999999975555433222333 44444
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=84.53 E-value=0.24 Score=45.80 Aligned_cols=41 Identities=20% Similarity=0.095 Sum_probs=27.5
Q ss_pred ccCCCeEEEeCCCCCC-CHHHHHHHHHHH---ccCCCeEEEEecC
Q 006275 275 LQDPDLLLLDEPTNHL-DLDTIEWLEGYL---GKQDVPMVIISHD 315 (652)
Q Consensus 275 ~~~p~iLLLDEPts~L-D~~~~~~l~~~L---~~~g~tvIivsHd 315 (652)
+...++|++|+-=.-. +......|..++ .+.|+.+|++|..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 4578999999874332 345555565554 4578888888764
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=84.47 E-value=0.31 Score=48.29 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~ 483 (652)
+|.|=|+=||||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 57889999999999999999988665444444
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.43 E-value=0.25 Score=45.36 Aligned_cols=52 Identities=10% Similarity=0.049 Sum_probs=35.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCHHHHHh-hcCeEEEE
Q 006275 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFLDQ-LCTKIVET 329 (652)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~~--g~tvIivsHd~~~l~~-~~d~ii~l 329 (652)
+.+|+|+||. -.|...+...|...|.+. +.-+|++|++..-+.. +-.|+..+
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i 162 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLH 162 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEE
Confidence 4679999975 345577788888888763 4456888999874433 44565443
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=84.35 E-value=0.23 Score=47.73 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-----------CCCeeEEEEC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE-----------KPRGGEVLLG 484 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~-----------~p~~G~i~~~ 484 (652)
++||||-.-+|||||+++|++-- .|.-|.|.+.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence 68999999999999999999643 4455777553
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=83.82 E-value=0.21 Score=50.20 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=25.2
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+++..+.+.||.|+||||+.+.|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5677899999999999999999999874
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=83.56 E-value=0.22 Score=49.03 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=22.6
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
...++| ++.++||.|+|||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444 45668999999999999999864
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.41 E-value=0.28 Score=45.86 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=33.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHH
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFV 603 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i 603 (652)
.+++|+||.=. |...+...|...|++.. ..+|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 46999999954 88888889999998764 3788999887655
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.34 E-value=0.22 Score=50.61 Aligned_cols=44 Identities=11% Similarity=-0.041 Sum_probs=33.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHh
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQ 605 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~ 605 (652)
|-++++||.-+-........+....++++..+++++.++.-+..
T Consensus 277 ~v~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~ 320 (433)
T d1e9ra_ 277 RLWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDD 320 (433)
T ss_dssp CEEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred ceEEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHH
Confidence 34688999877766666666666667788899999999776643
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=83.33 E-value=0.17 Score=48.78 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=25.7
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++|-+|++++|+|+.|+|||+|+..+..-.
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~ 91 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTILNQ 91 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred ccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence 788999999999999999999987654443
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.08 E-value=0.28 Score=48.56 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=22.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPD 150 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~ 150 (652)
++.|=|+-||||||+++.|.-.+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 58899999999999999999877543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.00 E-value=0.31 Score=44.67 Aligned_cols=52 Identities=8% Similarity=0.031 Sum_probs=36.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecCHHHHHh-hccEEEEE
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQ-IVNRVVEV 613 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~--tvi~vsHd~~~i~~-~~drvi~l 613 (652)
+.+|+|+||. -.|...+...|...|++... -+|++|++.+-+.. +-.|...+
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i 162 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLH 162 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEE
Confidence 3789999986 45667788889999988743 56888999874433 33454444
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.58 E-value=0.29 Score=45.44 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=17.8
Q ss_pred EEEECCCCccHHHHHHHHH
Q 006275 126 VGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~ 144 (652)
++|+|..++|||||+..|+
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7999999999999999885
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.44 E-value=0.33 Score=45.11 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=28.0
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCC-CeEEEEecCH
Q 006275 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD-VPMVIISHDR 316 (652)
Q Consensus 270 LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g-~tvIivsHd~ 316 (652)
++.+-..|.-||++| ...|+-+++.+.+. ++...| +.+|++-..+
T Consensus 107 ~~g~~~aD~ailVvd-a~~G~~~Qt~e~~~-~~~~~gv~~iiv~vNK~ 152 (222)
T d1zunb3 107 ATGASTCDLAIILVD-ARYGVQTQTRRHSY-IASLLGIKHIVVAINKM 152 (222)
T ss_dssp HHHHTTCSEEEEEEE-TTTCSCHHHHHHHH-HHHHTTCCEEEEEEECT
T ss_pred ccccccCceEEEEec-cccCcccchHHHHH-HHHHcCCCEEEEEEEcc
Confidence 344556677788887 78899998877654 444445 3455544433
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=82.36 E-value=0.28 Score=49.86 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=28.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHh
Q 006275 280 LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 280 iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~ 321 (652)
++++||.-+-........+....+++|..+++++.++..+..
T Consensus 279 ~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~ 320 (433)
T d1e9ra_ 279 WLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDD 320 (433)
T ss_dssp EEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred EEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHH
Confidence 567788666555445555555667778888888888776643
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=81.68 E-value=0.26 Score=47.53 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=27.6
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
+++|- =+.|-+|++.+|+|+.|+|||+|+..+.--
T Consensus 56 ~~ID~-l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 56 IAIDA-MIPVGRGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp TTTTT-TSCCBTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred eEEec-cccccCCceEeeccCCCCChHHHHHHHHhh
Confidence 34433 368899999999999999999999765433
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=81.51 E-value=0.35 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+-++||+|+|||-|.|.|+.+.
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 5688999999999999999875
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=81.12 E-value=0.32 Score=48.09 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
++.|=|+-||||||+++.|...+
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCcCCCHHHHHHHHHHHh
Confidence 48899999999999999998654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=80.90 E-value=0.36 Score=43.90 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+||+|.-++|||||+..|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999763
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.64 E-value=0.43 Score=43.41 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q 006275 126 VGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~ 146 (652)
+.|||+.|.|||+++.-|+-.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHH
Confidence 679999999999999988754
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=80.48 E-value=0.34 Score=47.92 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPR 477 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~ 477 (652)
+|.|=|+=||||||+++.|...+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 58899999999999999999887654
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=80.23 E-value=0.38 Score=47.44 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+|+|=|+-||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 588999999999999999987664
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.16 E-value=0.43 Score=45.67 Aligned_cols=23 Identities=35% Similarity=0.291 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
-+.||||.|+|||+++.-++-.+
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999887543
|