Citrus Sinensis ID: 006284

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650--
MSLVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKVIQC
cccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHccccEEEEcccHHHHHHcccccccccccEEEEEcccccccccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHcccccEEEEEEcccccccccEEEEEEEccccHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHcccccEEEEEccccccccccccccEEEcccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHcccccccccccccc
cccccccHHHHHHHccccccccccHHHccccHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHccccEEEEcccHHHHHHHHcccccccEEEEEEEcHHHHHHHcccHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEEccHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHccccHHEEcccccHHHHHHHHHHHHcccccEEEEEEHHHcccccccccEEEEEccccccHHEEEEEccccccccccEEEEEEcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHcccHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccEEEccccccccccccEEcccccHHHHHHHHcEEEcccccHcHHHHHHccccccHHccc
MSLVSSKAELKRREKQKkksksggfeslnlsPNVFRAIkrkgykvptpiqrktmplilSGADVVAMartgsgktaAFLVPMLQRLnqhvpqggvralilspTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEElaqnpdiiiatpgrlmHHLSEVEDMSLKSVEYVVfdeadclfGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKaglrdphlvrldvdtkispdLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFreeglepsvcygdmdqdaRKIHVSRFRARKTMFLIVTDVAargidiplldnvinwdfppkpkifvHRVGraaragrtgtafsfvTSEDMAYLLDLHLFlskpiraapseeeVLLDMDGVMSKIDQAIAngetiygrfpqtvIDLVSDRVREIIDSSADLNSLQRTCTNAFRlysktkplpskesirrgkdlpreglhpmfKNVLEGGELMALAFSERlkafrpkqtILEAEGEAArskhlqgpssqwvDVMKKKRAVHEKIINLVHQqrssksmekevepeADSLMAKEIKEThgskrkaktfkdeeyfissvptnhhmeaglsvrsdqgfgLNRLEAAVLDLvaddsgglqkqkqvyhwdkviqc
mslvsskaelkrrekqkkksksggfeslnlspnvfraikrkgykvptpiqrktmpLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKftkelgrytDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAngetiygrfPQTVIDLVSDRVREIIDssadlnslqrTCTNAFrlysktkplpskesirrgkdlpreglHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEgeaarskhlqgpssqwvDVMKKKRAVHEKIINlvhqqrssksmekevePEADSLMAKeikethgskrkaktfkdeEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADdsgglqkqkqvyhwdkviqc
MSLVSSkaelkrrekqkkksksGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVgraaragrtgtaFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKVIQC
********************************NVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLY*************************MFKNVLEGGELMALAFSERLKAF*************************WVDVM***RAVHEKIINLV******************************************YFI**************VRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKVI**
****************************NLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA********************************QTVIDLVSDRVREIIDSSADLNSLQ********************************LHPMFKNV************E*LKAFRPKQTILEA*******************************************************************************ISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDL****************WDKVIQC
************************FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEA***************QWVDVMKKKRAVHEKIINLVH*****************SLMAKEIK********AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKVIQC
**********************GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQA*ANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSK*SI**GKDLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEA************W*D************INLVHQQRS********************************FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWD*****
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MSLVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKVIQC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query652 2.2.26 [Sep-21-2011]
O49289 845 Putative DEAD-box ATP-dep yes no 0.990 0.764 0.761 0.0
A2YV85 851 DEAD-box ATP-dependent RN N/A no 0.957 0.733 0.718 0.0
A3BT52 851 DEAD-box ATP-dependent RN yes no 0.957 0.733 0.715 0.0
Q8K4L0 874 ATP-dependent RNA helicas yes no 0.935 0.697 0.462 1e-159
Q8TDD1 881 ATP-dependent RNA helicas yes no 0.941 0.696 0.456 1e-150
Q54CD8 1091 ATP-dependent RNA helicas yes no 0.797 0.476 0.475 1e-147
Q8NJM2 869 ATP-dependent RNA helicas yes no 0.935 0.701 0.415 1e-137
A1DNG2 934 ATP-dependent RNA helicas N/A no 0.941 0.657 0.401 1e-136
Q2UHC1 929 ATP-dependent RNA helicas yes no 0.938 0.658 0.400 1e-135
A6QUM7 900 ATP-dependent RNA helicas N/A no 0.930 0.674 0.411 1e-135
>sp|O49289|RH29_ARATH Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana GN=RH29 PE=3 SV=1 Back     alignment and function desciption
 Score = 1018 bits (2633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/651 (76%), Positives = 572/651 (87%), Gaps = 5/651 (0%)

Query: 3   LVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGAD 62
           LVSS  EL R+EKQKKK KSGGFESLNL PNVF AIK+KGYKVPTPIQRKTMPLILSG D
Sbjct: 8   LVSSVTELHRKEKQKKKGKSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVD 67

Query: 63  VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122
           VVAMARTGSGKTAAFL+PML++L QHVPQGGVRALILSPTRDLA QTLKFTKELG++TDL
Sbjct: 68  VVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDL 127

Query: 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182
           R+SLLVGGDSME QFEEL + PD+IIATPGRLMH LSEV+DM+L++VEYVVFDEAD LFG
Sbjct: 128 RVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFG 187

Query: 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA 242
           MGFAEQLH+IL QLSENRQTLLFSATLPSALAEFAKAGLR+P LVRLDV+ KISPDLKL+
Sbjct: 188 MGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLS 247

Query: 243 FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
           F T+R EEK++ALLY++REHISSDQQTLIFVSTKHHVEF+N LF+ E +EPSVCYGDMDQ
Sbjct: 248 FLTVRPEEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQ 307

Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
           DARKIHVSRFRARKTM LIVTD+AARGIDIPLLDNVINWDFPP+PKIFVHRVGRAARAGR
Sbjct: 308 DARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGR 367

Query: 363 TGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGR 422
           TG A+SFVT EDM Y+LDLHLFLSKP+R AP+E+EVL +M+ VM+K  QAI +G T+YGR
Sbjct: 368 TGCAYSFVTPEDMPYMLDLHLFLSKPVRPAPTEDEVLKNMEEVMTKTSQAIDSGVTVYGR 427

Query: 423 FPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL 482
           FPQ  IDL+ +R RE+IDSSA+L+SL+RT T AFRLYSKTKP PSKESIRR KDLPREGL
Sbjct: 428 FPQKTIDLIFNRTREMIDSSAELDSLERTSTKAFRLYSKTKPSPSKESIRRAKDLPREGL 487

Query: 483 HPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRA 542
           HP+F++++E GEL A++F +++K FRPKQTILEAEGE A+SKH++GP+ QWVDVMKKKRA
Sbjct: 488 HPIFRSIIETGELEAMSFFQKIKNFRPKQTILEAEGEVAKSKHVKGPAGQWVDVMKKKRA 547

Query: 543 VHEKIINLVHQQR---SSKSMEKEVEPEADSLMAK-EIKETHGSKRKAK-TFKDEEYFIS 597
           +HE+IIN  HQQ    S+  +E E EP    +    E  +  G KRKA+ TFKD+E+FIS
Sbjct: 548 IHEEIINTRHQQNQKTSNNHLEMEAEPTTSFVDGTVEGSKVSGKKRKAQETFKDDEFFIS 607

Query: 598 SVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDK 648
           S+P NHH EAGLS+R ++GFG NRL+AAVLDLVADD  G+++Q+  YHWDK
Sbjct: 608 SIPVNHHSEAGLSLRGNEGFGSNRLDAAVLDLVADDGQGIKQQQSNYHWDK 658

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica GN=OsI_028228 PE=2 SV=2 Back     alignment and function description
>sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica GN=Os08g0416100 PE=2 SV=2 Back     alignment and function description
>sp|Q8K4L0|DDX54_MOUSE ATP-dependent RNA helicase DDX54 OS=Mus musculus GN=Ddx54 PE=1 SV=1 Back     alignment and function description
>sp|Q8TDD1|DDX54_HUMAN ATP-dependent RNA helicase DDX54 OS=Homo sapiens GN=DDX54 PE=1 SV=2 Back     alignment and function description
>sp|Q54CD8|DDX54_DICDI ATP-dependent RNA helicase ddx54 OS=Dictyostelium discoideum GN=helA PE=3 SV=1 Back     alignment and function description
>sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dbp10 PE=3 SV=1 Back     alignment and function description
>sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp10 PE=3 SV=1 Back     alignment and function description
>sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=dbp10 PE=3 SV=1 Back     alignment and function description
>sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP10 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query652
255582203 789 dead box ATP-dependent RNA helicase, put 0.990 0.818 0.862 0.0
359492294 784 PREDICTED: putative DEAD-box ATP-depende 0.984 0.818 0.866 0.0
302142729 786 unnamed protein product [Vitis vinifera] 0.984 0.816 0.863 0.0
449511783 789 PREDICTED: putative DEAD-box ATP-depende 0.987 0.816 0.831 0.0
449449653 789 PREDICTED: putative DEAD-box ATP-depende 0.987 0.816 0.831 0.0
356558698 778 PREDICTED: putative DEAD-box ATP-depende 0.961 0.805 0.832 0.0
356506148 778 PREDICTED: putative DEAD-box ATP-depende 0.961 0.805 0.829 0.0
357474503 787 hypothetical protein MTR_4g079320 [Medic 0.957 0.792 0.793 0.0
334183955 845 DEAD-box helicase domain-containing prot 0.990 0.764 0.761 0.0
297842471 834 hypothetical protein ARALYDRAFT_316620 [ 0.990 0.774 0.755 0.0
>gi|255582203|ref|XP_002531894.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223528461|gb|EEF30493.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1167 bits (3019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/646 (86%), Positives = 604/646 (93%)

Query: 3   LVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGAD 62
           LVSSKAELK ++  KKK+KSGGFESLNLSPNV+  +KRKGY+VPTPIQRKTMP+ILSG+D
Sbjct: 7   LVSSKAELKHKQNLKKKAKSGGFESLNLSPNVYNGVKRKGYRVPTPIQRKTMPIILSGSD 66

Query: 63  VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122
           VVAMARTGSGKTAAFL+PML+RL QHV QGG RALILSPTRDLALQTLKFTKELGR+TDL
Sbjct: 67  VVAMARTGSGKTAAFLIPMLERLKQHVSQGGARALILSPTRDLALQTLKFTKELGRFTDL 126

Query: 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182
           R SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV+DMSL++VEYVVFDEAD LFG
Sbjct: 127 RASLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADSLFG 186

Query: 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA 242
           MGFAEQLH+IL QLSENRQTLLFSATLPSALAEFAKAGLRDP LVRLDVDTKISPDLK  
Sbjct: 187 MGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDVDTKISPDLKTV 246

Query: 243 FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
           FFTLRQEEK+AALLY++REHISSDQQTLIFVSTKHHVEFLN+LFREEG+EPSVCYGDMDQ
Sbjct: 247 FFTLRQEEKYAALLYLVREHISSDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQ 306

Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
           DARKIHVSRFRA+KTM LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR
Sbjct: 307 DARKIHVSRFRAQKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 366

Query: 363 TGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGR 422
           TGTAFSFVTSEDM YLLDLHLFLSKPIRAAP+EEEV+ DMD VM KI++A+ANGETIYGR
Sbjct: 367 TGTAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEEEVVKDMDRVMMKINEAVANGETIYGR 426

Query: 423 FPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL 482
           FPQTV+DLVSDRVRE+IDSSA+L SLQ+TCTNAFRLY+KTKPLP+KESIRR KDLP EG+
Sbjct: 427 FPQTVLDLVSDRVREVIDSSAELTSLQKTCTNAFRLYTKTKPLPAKESIRRVKDLPHEGI 486

Query: 483 HPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRA 542
           HP+FKN L GGEL ALAFSERLKAFRPKQTILEAEGEAA+SK+ +GPSSQWVDVMK+KRA
Sbjct: 487 HPIFKNGLGGGELTALAFSERLKAFRPKQTILEAEGEAAKSKNARGPSSQWVDVMKRKRA 546

Query: 543 VHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTN 602
           +HEKIINLVHQ RS +  +KEVE E  S   KE KE  GSKRKAK+FKDEEY+ISSVPTN
Sbjct: 547 IHEKIINLVHQHRSIQQEDKEVESEIPSSSGKEKKEARGSKRKAKSFKDEEYYISSVPTN 606

Query: 603 HHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDK 648
           HH EAGLSVR+++GFG NRLEAAVLDLVADDSGG+QKQK VYHWDK
Sbjct: 607 HHTEAGLSVRANEGFGSNRLEAAVLDLVADDSGGMQKQKTVYHWDK 652

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359492294|ref|XP_002279081.2| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142729|emb|CBI19932.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449511783|ref|XP_004164052.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449449653|ref|XP_004142579.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356558698|ref|XP_003547640.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like [Glycine max] Back     alignment and taxonomy information
>gi|356506148|ref|XP_003521849.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like [Glycine max] Back     alignment and taxonomy information
>gi|357474503|ref|XP_003607536.1| hypothetical protein MTR_4g079320 [Medicago truncatula] gi|355508591|gb|AES89733.1| hypothetical protein MTR_4g079320 [Medicago truncatula] Back     alignment and taxonomy information
>gi|334183955|ref|NP_177829.5| DEAD-box helicase domain-containing protein [Arabidopsis thaliana] gi|75318355|sp|O49289.1|RH29_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 29 gi|2829912|gb|AAC00620.1| Similar ATP-dependent RNA Helicase [Arabidopsis thaliana] gi|332197806|gb|AEE35927.1| DEAD-box helicase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297842471|ref|XP_002889117.1| hypothetical protein ARALYDRAFT_316620 [Arabidopsis lyrata subsp. lyrata] gi|297334958|gb|EFH65376.1| hypothetical protein ARALYDRAFT_316620 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query652
ZFIN|ZDB-GENE-021220-2 862 ddx54 "DEAD (Asp-Glu-Ala-Asp) 0.934 0.706 0.462 3.1e-138
RGD|1562539 906 Ddx54 "DEAD (Asp-Glu-Ala-Asp) 0.934 0.672 0.442 1.4e-133
MGI|MGI:1919240 874 Ddx54 "DEAD (Asp-Glu-Ala-Asp) 0.932 0.695 0.447 2.3e-133
UNIPROTKB|E1BGI6 877 DDX54 "Uncharacterized protein 0.930 0.692 0.439 1.2e-131
UNIPROTKB|F1NTK9 822 DDX54 "Uncharacterized protein 0.935 0.742 0.447 3.5e-130
UNIPROTKB|E2QSR5 912 DDX54 "Uncharacterized protein 0.929 0.664 0.446 5.7e-130
UNIPROTKB|Q8TDD1 881 DDX54 "ATP-dependent RNA helic 0.938 0.694 0.439 2.5e-129
DICTYBASE|DDB_G0292992 1091 helA "putative RNA helicase" [ 0.375 0.224 0.621 5.1e-128
ASPGD|ASPL0000054300 936 AN0583 [Emericella nidulans (t 0.368 0.256 0.614 1.9e-120
WB|WBGene00022378 871 Y94H6A.5 [Caenorhabditis elega 0.929 0.695 0.393 3.6e-112
ZFIN|ZDB-GENE-021220-2 ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 1353 (481.3 bits), Expect = 3.1e-138, P = 3.1e-138
 Identities = 300/648 (46%), Positives = 415/648 (64%)

Query:    23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
             GGF+S+ LS  V++ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSGKTAAFLVP+ 
Sbjct:    78 GGFQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLF 137

Query:    83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
             ++L     Q G RALIL+PTR+LALQT+KFTKELG++T LR +L++GGDSM+ QF  L +
Sbjct:   138 EKLKAPQAQTGARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHE 197

Query:   143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
             NPDIII TPGRLMH + E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I+ +L + RQT
Sbjct:   198 NPDIIIGTPGRLMHVIQEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDARQT 256

Query:   203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
             LLFSATLP  + EFA+AGL +P L+RLDVDTK+S  LKL+FF+LR ++K A LL+++R  
Sbjct:   257 LLFSATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQLKLSFFSLRLDDKPALLLHLLRNV 316

Query:   263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
             +   +QT++FV+TKHHVE+L  L   EG++ S  Y  +DQ ARKI + RF  RK M L+V
Sbjct:   317 VKPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGRFVHRKVMLLLV 376

Query:   323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
             TDVAARGIDIPLLDNVIN++FP KPK+F+HRV            +S V  +++ YL DLH
Sbjct:   377 TDVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSLVCPDEVPYLYDLH 436

Query:   383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
             LFL +P++ A  E     + DGV              +GR PQ+V+D    ++     +S
Sbjct:   437 LFLGRPMQLAHPEHTQ--EADGV--------------FGRVPQSVLDDEECQLITAHQNS 480

Query:   443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD--LPREGLHPMFKNVLEGGELMALAF 500
              DL +L+R   NA++ Y K++P+PS ESI+R ++  L    +HP+    LE  EL  L  
Sbjct:   481 LDLQNLRRVSENAYKQYLKSRPVPSAESIKRSRNTQLTDMAVHPLLGCGLEKMELDRLLM 540

Query:   501 SERLKAFRPKQTILE--AEGEAARSKHLQGPSS---QWVDVMKKKRAV--HEKIINLVHQ 553
              + +K ++ K TI E  +  + + S+ ++   S   Q V+   + RA    E    L  +
Sbjct:   541 VDTIKGYKAKSTIFEINSSNKTSASEVMRAKRSRDRQRVEKFSRARAELRAEPGAGLRAE 600

Query:   554 QRSSKSMEKEVEPEADSLMA--KEI-----------KETHGSKRKAKTFKDEEYFISSVP 600
                 +  ++E E E + L     E+             TH SK+     +D+E++I   P
Sbjct:   601 PPVHRETQEEDEEEQEELSTVFSEVVGGKRRRPDAEPHTHKSKKSRTAGRDQEFYIPYRP 660

Query:   601 TNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDK 648
              + + E GLS+ S  G    +  +AVLDL+ D+S  L + K +  WD+
Sbjct:   661 KDFNSERGLSLDSGAGSFEQQASSAVLDLIGDESNTLNQHKSLMKWDR 708
GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0008026 "ATP-dependent helicase activity" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
RGD|1562539 Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1919240 Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGI6 DDX54 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NTK9 DDX54 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSR5 DDX54 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TDD1 DDX54 "ATP-dependent RNA helicase DDX54" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292992 helA "putative RNA helicase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000054300 AN0583 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00022378 Y94H6A.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A3BT52RH29_ORYSJ3, ., 6, ., 4, ., 1, 30.71510.95700.7332yesno
A2YV85RH29_ORYSI3, ., 6, ., 4, ., 1, 30.71830.95700.7332N/Ano
O49289RH29_ARATH3, ., 6, ., 4, ., 1, 30.76190.99070.7644yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.130.946
3rd Layer3.6.40.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query652
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 1e-119
cd00268203 cd00268, DEADc, DEAD-box helicases 2e-87
PRK11192434 PRK11192, PRK11192, ATP-dependent RNA helicase Srm 2e-83
PRK11776460 PRK11776, PRK11776, ATP-dependent RNA helicase Dbp 5e-82
PRK10590456 PRK10590, PRK10590, ATP-dependent RNA helicase Rhl 2e-79
PTZ00110545 PTZ00110, PTZ00110, helicase; Provisional 3e-68
PRK01297475 PRK01297, PRK01297, ATP-dependent RNA helicase Rhl 4e-68
PTZ00424401 PTZ00424, PTZ00424, helicase 45; Provisional 1e-65
PRK04537572 PRK04537, PRK04537, ATP-dependent RNA helicase Rhl 1e-64
PRK11634629 PRK11634, PRK11634, ATP-dependent RNA helicase Dea 1e-62
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 9e-60
PRK04837423 PRK04837, PRK04837, ATP-dependent RNA helicase Rhl 5e-59
PLN00206518 PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel 2e-51
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 1e-48
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 4e-37
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 2e-31
COG1205 851 COG1205, COG1205, Distinct helicase family with a 1e-24
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 3e-21
COG1201 814 COG1201, Lhr, Lhr-like helicases [General function 5e-21
smart0049082 smart00490, HELICc, helicase superfamily c-termina 8e-20
COG1204 766 COG1204, COG1204, Superfamily II helicase [General 6e-13
TIGR03817742 TIGR03817, DECH_helic, helicase/secretion neighbor 1e-11
COG0514590 COG0514, RecQ, Superfamily II DNA helicase [DNA re 2e-11
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 5e-11
PRK13766 773 PRK13766, PRK13766, Hef nuclease; Provisional 3e-07
TIGR01389591 TIGR01389, recQ, ATP-dependent DNA helicase RecQ 6e-07
PRK13767 876 PRK13767, PRK13767, ATP-dependent helicase; Provis 3e-06
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 4e-06
TIGR04121 803 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA 8e-06
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 1e-05
TIGR00614470 TIGR00614, recQ_fam, ATP-dependent DNA helicase, R 2e-05
PRK09751 1490 PRK09751, PRK09751, putative ATP-dependent helicas 2e-05
PRK00254720 PRK00254, PRK00254, ski2-like helicase; Provisiona 2e-05
COG4098441 COG4098, comFA, Superfamily II DNA/RNA helicase re 9e-05
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 2e-04
pfam0814764 pfam08147, DBP10CT, DBP10CT (NUC160) domain 4e-04
cd09710353 cd09710, Cas3_I-D, CRISPR/Cas system-associated pr 4e-04
cd09639353 cd09639, Cas3_I, CRISPR/Cas system-associated prot 7e-04
TIGR03158357 TIGR03158, cas3_cyano, CRISPR-associated helicase 8e-04
COG4581 1041 COG4581, COG4581, Superfamily II RNA helicase [DNA 0.001
COG1110 1187 COG1110, COG1110, Reverse gyrase [DNA replication, 0.002
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  363 bits (934), Expect = e-119
 Identities = 158/485 (32%), Positives = 255/485 (52%), Gaps = 24/485 (4%)

Query: 17  KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
            ++     F SL LSP + +A+K  G++ PTPIQ   +PLIL+G DV+  A+TG+GKTAA
Sbjct: 23  GEEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAA 82

Query: 77  FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMES 135
           FL+P+LQ++ + V +  V ALIL+PTR+LA+Q  +  ++LG+    LR++++ GG S+  
Sbjct: 83  FLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRK 142

Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
           Q E L +  DI++ATPGRL+  +     + L  VE +V DEAD +  MGF + + KIL  
Sbjct: 143 QIEALKRGVDIVVATPGRLLDLIKR-GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKA 201

Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL---AFFTLRQEEKH 252
           L  +RQTLLFSAT+P  + E A+  L DP  + + V+       K+         +EEK 
Sbjct: 202 LPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKL 261

Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
             LL ++++      + ++FV TK  VE L    R+ G + +  +GD+ Q+ R   + +F
Sbjct: 262 ELLLKLLKDEDEG--RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKF 319

Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
           +  +   L+ TDVAARG+DIP + +VIN+D P  P+ +VHR+GR  RAGR G A SFVT 
Sbjct: 320 KDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTE 379

Query: 373 -EDMAYLLDLHLFLSKPI---RAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQ--- 425
            E++  L  +   L + +      P +E     +        +  ++      +      
Sbjct: 380 EEEVKKLKRIEKRLERKLPSAVLLPLDEPEDAKLLKTTRPGLEEESDISDEIKKLKSSKK 439

Query: 426 ----------TVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK 475
                     T+  L+++  +EI  +   +         +       + +    S R  +
Sbjct: 440 ALLRGLGVRFTLSKLLANLGKEIPGAGDAVTIDPELERRSPNSADDIEYILKGLSYRAEE 499

Query: 476 DLPRE 480
              + 
Sbjct: 500 RTAKN 504

Length = 513
>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases Back     alignment and domain information
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional Back     alignment and domain information
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional Back     alignment and domain information
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional Back     alignment and domain information
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ Back     alignment and domain information
>gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|226583 COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|203859 pfam08147, DBP10CT, DBP10CT (NUC160) domain Back     alignment and domain information
>gnl|CDD|187841 cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain Back     alignment and domain information
>gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 Back     alignment and domain information
>gnl|CDD|234127 TIGR03158, cas3_cyano, CRISPR-associated helicase Cas3, subtype CYANO Back     alignment and domain information
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 652
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0343758 consensus RNA Helicase [RNA processing and modific 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 100.0
PTZ00110545 helicase; Provisional 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0346569 consensus RNA helicase [RNA processing and modific 100.0
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0347731 consensus RNA helicase [RNA processing and modific 100.0
PTZ00424401 helicase 45; Provisional 100.0
KOG0334997 consensus RNA helicase [RNA processing and modific 100.0
KOG0327397 consensus Translation initiation factor 4F, helica 100.0
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 100.0
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 100.0
KOG4284 980 consensus DEAD box protein [Transcription] 100.0
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
PRK13767 876 ATP-dependent helicase; Provisional 100.0
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 100.0
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
PRK106891147 transcription-repair coupling factor; Provisional 100.0
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 100.0
TIGR00643630 recG ATP-dependent DNA helicase RecG. 100.0
PRK09401 1176 reverse gyrase; Reviewed 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 100.0
COG1201 814 Lhr Lhr-like helicases [General function predictio 100.0
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 100.0
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK14701 1638 reverse gyrase; Provisional 100.0
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 100.0
PHA02558501 uvsW UvsW helicase; Provisional 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 100.0
PRK09200790 preprotein translocase subunit SecA; Reviewed 100.0
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 100.0
PRK05580679 primosome assembly protein PriA; Validated 100.0
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 100.0
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 100.0
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
PRK13766773 Hef nuclease; Provisional 100.0
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 100.0
TIGR00595505 priA primosomal protein N'. All proteins in this f 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
COG1202830 Superfamily II helicase, archaea-specific [General 100.0
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
COG1205 851 Distinct helicase family with a unique C-terminal 100.0
KOG0354746 consensus DEAD-box like helicase [General function 100.0
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.98
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.98
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.97
PRK04914956 ATP-dependent helicase HepA; Validated 99.97
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.97
PRK09694878 helicase Cas3; Provisional 99.97
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.97
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.97
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.97
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.96
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.96
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.96
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.96
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.96
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.95
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.95
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.95
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.95
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.94
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.93
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.93
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 99.93
KOG0950 1008 consensus DNA polymerase theta/eta, DEAD-box super 99.92
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.92
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 99.92
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 99.91
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 99.9
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.9
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.89
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 99.89
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.89
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.89
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.88
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 99.87
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 99.86
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.86
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.86
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 99.85
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.85
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 99.85
PRK05298652 excinuclease ABC subunit B; Provisional 99.84
COG4096875 HsdR Type I site-specific restriction-modification 99.84
smart00487201 DEXDc DEAD-like helicases superfamily. 99.84
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.84
KOG0920 924 consensus ATP-dependent RNA helicase A [RNA proces 99.82
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.82
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.82
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 99.79
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 99.79
PRK14873665 primosome assembly protein PriA; Provisional 99.78
KOG0387923 consensus Transcription-coupled repair protein CSB 99.77
KOG1123776 consensus RNA polymerase II transcription initiati 99.77
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 99.75
CHL00122870 secA preprotein translocase subunit SecA; Validate 99.75
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.74
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 99.73
COG4889 1518 Predicted helicase [General function prediction on 99.73
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.72
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 99.72
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 99.71
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 99.7
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.69
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 99.69
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 99.69
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.68
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.67
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.61
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 99.61
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 99.59
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 99.56
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 99.54
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 99.53
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.51
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 99.51
smart0049082 HELICc helicase superfamily c-terminal domain. 99.51
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 99.48
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 99.48
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 99.41
KOG1002791 consensus Nucleotide excision repair protein RAD16 99.39
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 99.37
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 99.29
KOG4439901 consensus RNA polymerase II transcription terminat 99.29
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 99.26
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 99.24
COG0610962 Type I site-specific restriction-modification syst 99.22
KOG2340698 consensus Uncharacterized conserved protein [Funct 99.21
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 99.19
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 99.18
smart00489289 DEXDc3 DEAD-like helicases superfamily. 99.07
smart00488289 DEXDc2 DEAD-like helicases superfamily. 99.07
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 99.01
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 98.74
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 98.6
PRK15483 986 type III restriction-modification system StyLTI en 98.57
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 98.39
COG3587 985 Restriction endonuclease [Defense mechanisms] 98.34
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 98.25
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 98.23
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 98.21
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 98.14
TIGR00376637 DNA helicase, putative. The gene product may repre 98.06
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 97.96
PRK10536262 hypothetical protein; Provisional 97.95
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 97.93
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 97.9
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 97.89
PF0814764 DBP10CT: DBP10CT (NUC160) domain; InterPro: IPR012 97.87
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.87
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.84
KOG1001674 consensus Helicase-like transcription factor HLTF/ 97.77
PF1324576 AAA_19: Part of AAA domain 97.69
PRK10875615 recD exonuclease V subunit alpha; Provisional 97.63
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 97.6
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 97.54
KOG1803649 consensus DNA helicase [Replication, recombination 97.47
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 97.43
PRK13889988 conjugal transfer relaxase TraA; Provisional 97.38
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 97.27
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 97.25
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 97.25
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 97.16
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 97.13
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 97.12
PRK13826 1102 Dtr system oriT relaxase; Provisional 97.06
PRK04296190 thymidine kinase; Provisional 97.06
PRK14974336 cell division protein FtsY; Provisional 96.94
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 96.93
PRK08181269 transposase; Validated 96.89
PRK06526254 transposase; Provisional 96.83
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.75
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 96.75
smart00382148 AAA ATPases associated with a variety of cellular 96.72
smart00492141 HELICc3 helicase superfamily c-terminal domain. 96.63
KOG18051100 consensus DNA replication helicase [Replication, r 96.61
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 96.55
PF14617252 CMS1: U3-containing 90S pre-ribosomal complex subu 96.44
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 96.42
smart00491142 HELICc2 helicase superfamily c-terminal domain. 96.42
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 96.36
KOG1131 755 consensus RNA polymerase II transcription initiati 96.32
PF13871278 Helicase_C_4: Helicase_C-like 96.31
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 96.22
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 96.16
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 96.1
PRK07952244 DNA replication protein DnaC; Validated 96.1
PRK13709 1747 conjugal transfer nickase/helicase TraI; Provision 95.98
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 95.95
PRK11331459 5-methylcytosine-specific restriction enzyme subun 95.93
PRK05642234 DNA replication initiation factor; Validated 95.93
cd01124187 KaiC KaiC is a circadian clock protein primarily f 95.85
PRK14712 1623 conjugal transfer nickase/helicase TraI; Provision 95.83
COG3973747 Superfamily I DNA and RNA helicases [General funct 95.83
PRK08727233 hypothetical protein; Validated 95.82
COG3421 812 Uncharacterized protein conserved in bacteria [Fun 95.82
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 95.8
PRK00771437 signal recognition particle protein Srp54; Provisi 95.79
PRK11054684 helD DNA helicase IV; Provisional 95.65
PHA02533534 17 large terminase protein; Provisional 95.55
KOG0298 1394 consensus DEAD box-containing helicase-like transc 95.54
PRK06921266 hypothetical protein; Provisional 95.5
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 95.49
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 95.43
PRK05580 679 primosome assembly protein PriA; Validated 95.39
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 95.36
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 95.35
PRK06893229 DNA replication initiation factor; Validated 95.33
PRK08116268 hypothetical protein; Validated 95.27
PRK00149450 dnaA chromosomal replication initiation protein; R 95.24
TIGR00595505 priA primosomal protein N'. All proteins in this f 95.23
TIGR01547396 phage_term_2 phage terminase, large subunit, PBSX 95.19
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 95.18
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 95.18
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 95.13
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 95.11
PF00004132 AAA: ATPase family associated with various cellula 95.1
TIGR00362405 DnaA chromosomal replication initiator protein Dna 95.09
PRK08769319 DNA polymerase III subunit delta'; Validated 95.09
PHA02544316 44 clamp loader, small subunit; Provisional 95.06
CHL00181287 cbbX CbbX; Provisional 95.05
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 95.05
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 95.03
PRK14087450 dnaA chromosomal replication initiation protein; P 95.03
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 95.02
PRK14873665 primosome assembly protein PriA; Provisional 94.95
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 94.95
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 94.89
PLN03025319 replication factor C subunit; Provisional 94.89
PRK09183259 transposase/IS protein; Provisional 94.86
PRK12377248 putative replication protein; Provisional 94.81
PRK08084235 DNA replication initiation factor; Provisional 94.8
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 94.77
PRK08903227 DnaA regulatory inactivator Hda; Validated 94.76
TIGR00064272 ftsY signal recognition particle-docking protein F 94.71
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 94.71
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 94.67
PRK05707328 DNA polymerase III subunit delta'; Validated 94.65
COG1484254 DnaC DNA replication protein [DNA replication, rec 94.63
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 94.59
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 94.57
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 94.54
TIGR01074664 rep ATP-dependent DNA helicase Rep. Designed to id 94.54
PRK08533230 flagellar accessory protein FlaH; Reviewed 94.53
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 94.49
TIGR01075 715 uvrD DNA helicase II. Designed to identify uvrD me 94.49
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 94.49
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 94.48
PF05729166 NACHT: NACHT domain 94.44
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 94.43
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 94.41
PRK11773 721 uvrD DNA-dependent helicase II; Provisional 94.39
PRK06835329 DNA replication protein DnaC; Validated 94.37
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 94.3
PRK13894319 conjugal transfer ATPase TrbB; Provisional 94.21
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 94.19
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 94.19
PRK14088440 dnaA chromosomal replication initiation protein; P 94.09
PF13173128 AAA_14: AAA domain 94.09
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 94.08
PRK12422445 chromosomal replication initiation protein; Provis 94.07
TIGR00643630 recG ATP-dependent DNA helicase RecG. 94.07
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 94.04
PRK12402337 replication factor C small subunit 2; Reviewed 94.01
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 93.97
PRK10867433 signal recognition particle protein; Provisional 93.92
COG2256436 MGS1 ATPase related to the helicase subunit of the 93.91
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 93.78
PHA03333752 putative ATPase subunit of terminase; Provisional 93.76
PTZ001121164 origin recognition complex 1 protein; Provisional 93.74
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 93.74
PRK13342413 recombination factor protein RarA; Reviewed 93.71
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 93.7
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 93.69
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 93.67
cd03115173 SRP The signal recognition particle (SRP) mediates 93.6
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 93.59
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 93.56
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 93.53
COG1198730 PriA Primosomal protein N' (replication factor Y) 93.48
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 93.47
COG0470325 HolB ATPase involved in DNA replication [DNA repli 93.42
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 93.38
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 93.35
PRK13833323 conjugal transfer protein TrbB; Provisional 93.32
PRK14086617 dnaA chromosomal replication initiation protein; P 93.23
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 93.23
PRK04195482 replication factor C large subunit; Provisional 93.15
TIGR00959428 ffh signal recognition particle protein. This mode 93.15
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 93.15
COG1200677 RecG RecG-like helicase [DNA replication, recombin 93.11
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 93.06
TIGR02928365 orc1/cdc6 family replication initiation protein. M 93.05
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 92.99
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 92.97
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 92.95
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 92.93
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 92.93
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 92.91
PRK09112351 DNA polymerase III subunit delta'; Validated 92.9
TIGR02785 1232 addA_Gpos recombination helicase AddA, Firmicutes 92.86
PRK00411394 cdc6 cell division control protein 6; Reviewed 92.81
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 92.73
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 92.72
PRK08939306 primosomal protein DnaI; Reviewed 92.71
PRK13341 725 recombination factor protein RarA/unknown domain f 92.7
PRK10416318 signal recognition particle-docking protein FtsY; 92.7
TIGR01073 726 pcrA ATP-dependent DNA helicase PcrA. Designed to 92.7
PRK11823446 DNA repair protein RadA; Provisional 92.6
PRK07471365 DNA polymerase III subunit delta'; Validated 92.6
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 92.57
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 92.42
KOG2028554 consensus ATPase related to the helicase subunit o 92.41
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 92.4
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 92.26
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 92.21
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 92.16
COG3972660 Superfamily I DNA and RNA helicases [General funct 92.15
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 92.08
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 92.02
PRK05973237 replicative DNA helicase; Provisional 92.02
PRK06904472 replicative DNA helicase; Validated 91.97
PRK08699325 DNA polymerase III subunit delta'; Validated 91.97
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 91.93
PRK10689 1147 transcription-repair coupling factor; Provisional 91.87
KOG2543438 consensus Origin recognition complex, subunit 5 [R 91.87
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 91.86
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 91.84
PRK06964342 DNA polymerase III subunit delta'; Validated 91.79
PTZ00293211 thymidine kinase; Provisional 91.78
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 91.69
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 91.69
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 91.66
PRK07940394 DNA polymerase III subunit delta'; Validated 91.58
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 91.51
KOG1133 821 consensus Helicase of the DEAD superfamily [Replic 91.37
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 91.29
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 91.24
PRK00440319 rfc replication factor C small subunit; Reviewed 91.24
PRK10436462 hypothetical protein; Provisional 91.22
COG0552340 FtsY Signal recognition particle GTPase [Intracell 91.16
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 91.14
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 91.09
PRK06871325 DNA polymerase III subunit delta'; Validated 91.0
PF02572172 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase 90.99
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 90.98
PRK06067234 flagellar accessory protein FlaH; Validated 90.97
TIGR02524358 dot_icm_DotB Dot/Icm secretion system ATPase DotB. 90.97
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 90.95
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 90.92
PHA00729226 NTP-binding motif containing protein 90.9
COG4626546 Phage terminase-like protein, large subunit [Gener 90.83
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 90.81
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 90.8
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 90.79
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 90.77
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 90.73
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 90.6
COG1618179 Predicted nucleotide kinase [Nucleotide transport 90.53
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 90.49
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 90.43
PF03969362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 90.32
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 90.32
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 90.3
PRK06090319 DNA polymerase III subunit delta'; Validated 90.29
COG0541451 Ffh Signal recognition particle GTPase [Intracellu 90.24
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 90.23
COG0593408 DnaA ATPase involved in DNA replication initiation 90.22
TIGR00665434 DnaB replicative DNA helicase. This model describe 90.21
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 90.19
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 90.18
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 90.11
PRK03992389 proteasome-activating nucleotidase; Provisional 90.07
PF00265176 TK: Thymidine kinase; InterPro: IPR001267 Thymidin 89.99
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 89.99
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 89.86
TIGR02688449 conserved hypothetical protein TIGR02688. Members 89.78
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 89.76
PRK04841 903 transcriptional regulator MalT; Provisional 89.75
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 89.74
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 89.54
cd01126384 TraG_VirD4 The TraG/TraD/VirD4 family are bacteria 89.38
PF03237384 Terminase_6: Terminase-like family; InterPro: IPR0 89.37
PF02534469 T4SS-DNA_transf: Type IV secretory system Conjugat 89.32
PRK13695174 putative NTPase; Provisional 89.24
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 89.19
TIGR02533486 type_II_gspE general secretory pathway protein E. 89.16
PRK13851344 type IV secretion system protein VirB11; Provision 89.15
TIGR00763775 lon ATP-dependent protease La. This protein is ind 89.12
PF05707193 Zot: Zonular occludens toxin (Zot); InterPro: IPR0 89.1
PRK09087226 hypothetical protein; Validated 89.03
PRK04328249 hypothetical protein; Provisional 89.01
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 88.94
PRK13764602 ATPase; Provisional 88.91
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 88.85
CHL00176638 ftsH cell division protein; Validated 88.82
PRK08840464 replicative DNA helicase; Provisional 88.75
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 88.61
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 88.55
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 88.46
PHA03368738 DNA packaging terminase subunit 1; Provisional 88.44
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 88.36
PRK05748448 replicative DNA helicase; Provisional 88.36
COG1132567 MdlB ABC-type multidrug transport system, ATPase a 88.34
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 88.32
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 88.29
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 88.26
COG2109198 BtuR ATP:corrinoid adenosyltransferase [Coenzyme m 88.24
cd03276198 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein 88.19
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 88.12
PRK13897606 type IV secretion system component VirD4; Provisio 88.09
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 87.91
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 87.63
KOG0701 1606 consensus dsRNA-specific nuclease Dicer and relate 87.56
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 87.52
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 87.45
PRK07414178 cob(I)yrinic acid a,c-diamide adenosyltransferase; 87.37
PHA00012361 I assembly protein 87.35
PRK08006471 replicative DNA helicase; Provisional 87.33
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 87.33
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 87.22
PF14516331 AAA_35: AAA-like domain 87.22
PRK07993334 DNA polymerase III subunit delta'; Validated 87.22
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 87.16
PRK08506472 replicative DNA helicase; Provisional 87.15
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 87.05
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 86.95
cd01128249 rho_factor Transcription termination factor rho is 86.94
COG2874235 FlaH Predicted ATPases involved in biogenesis of a 86.87
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 86.84
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 86.81
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 86.79
PRK10865857 protein disaggregation chaperone; Provisional 86.76
cd03289275 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic 86.75
PRK07413382 hypothetical protein; Validated 86.53
PRK07004460 replicative DNA helicase; Provisional 86.5
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 86.35
PRK07399314 DNA polymerase III subunit delta'; Validated 86.32
cd00983325 recA RecA is a bacterial enzyme which has roles in 86.22
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 86.2
PF04364137 DNA_pol3_chi: DNA polymerase III chi subunit, HolC 86.17
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 86.17
TIGR02012321 tigrfam_recA protein RecA. This model describes or 86.09
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 86.08
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 86.07
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 85.95
PF12846304 AAA_10: AAA-like domain 85.85
CHL00095821 clpC Clp protease ATP binding subunit 85.64
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 85.56
cd01393226 recA_like RecA is a bacterial enzyme which has rol 85.53
PHA00350399 putative assembly protein 85.44
TIGR03819340 heli_sec_ATPase helicase/secretion neighborhood AT 85.43
PRK05564313 DNA polymerase III subunit delta'; Validated 85.41
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 85.34
KOG15131300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 85.31
cd03239178 ABC_SMC_head The structural maintenance of chromos 85.29
PRK13850670 type IV secretion system protein VirD4; Provisiona 85.21
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 85.13
PRK08760476 replicative DNA helicase; Provisional 84.82
COG4098441 comFA Superfamily II DNA/RNA helicase required for 84.81
PRK05595444 replicative DNA helicase; Provisional 84.81
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 84.78
PRK14701 1638 reverse gyrase; Provisional 84.7
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 84.69
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 84.59
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-98  Score=761.76  Aligned_cols=508  Identities=58%  Similarity=0.870  Sum_probs=480.7

Q ss_pred             hHHHHhhccCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC
Q 006284           11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP   90 (652)
Q Consensus        11 ~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~   90 (652)
                      +..++++|++++|+|++|||+..++++|.+.||++|||+|+++||.|++++|++.+|.||||||.||++||+++|+.++ 
T Consensus         9 ~~~~~~~k~kg~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-   87 (529)
T KOG0337|consen    9 THREKGKKKKGSGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-   87 (529)
T ss_pred             hhHHhcCccCCCCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-
Confidence            4677777888889999999999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             CCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCce
Q 006284           91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE  170 (652)
Q Consensus        91 ~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~  170 (652)
                      ..|.+++|++|||+|+.|+.+++++++++++++.++++||++++++|..+..++|||++|||+++|+..++ .+.|+.++
T Consensus        88 ~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sve  166 (529)
T KOG0337|consen   88 QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVE  166 (529)
T ss_pred             ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-ecccccee
Confidence            78999999999999999999999999999999999999999999999999999999999999999999997 58999999


Q ss_pred             EEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhh
Q 006284          171 YVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE  250 (652)
Q Consensus       171 ~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~  250 (652)
                      ||||||||++++|||.+++.+++.++|.++|+++||||+|..+.+|+++++.+|.+++++.+.++++.++..|+.++..+
T Consensus       167 yVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~  246 (529)
T KOG0337|consen  167 YVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE  246 (529)
T ss_pred             eeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccC
Q 006284          251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI  330 (652)
Q Consensus       251 k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGl  330 (652)
                      |..+|++++...+. ..+++|||+|++||+++..+|+..|+.+..+||+|++..|+..+.+|+.++..+||+||+++||+
T Consensus       247 K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~  325 (529)
T KOG0337|consen  247 KEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGL  325 (529)
T ss_pred             HHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccC
Confidence            99999999998764 67899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCHHHHHhhhhhhHHHHH
Q 006284          331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKID  410 (652)
Q Consensus       331 Dip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~~~~~~~~~~~~~~~~  410 (652)
                      |||.+++|||||+|.++..|+||+||++|+|+.|++|++|.+.|.+|+.|++.|+++++...+...+...          
T Consensus       326 diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~~e~d~----------  395 (529)
T KOG0337|consen  326 DIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISHFEYDC----------  395 (529)
T ss_pred             CCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccchhhhcc----------
Confidence            9999999999999999999999999999999999999999999999999999999999988776533221          


Q ss_pred             HHHhcCCccccccchhHHHHhhHHHHHHHHhhHhhHHHHHHHHHHHHhhhcCCCCCCccccccCCCCCcc-CCCcccccc
Q 006284          411 QAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE-GLHPMFKNV  489 (652)
Q Consensus       411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~s~~~~~~~k~~~~~-~~~~~~~~~  489 (652)
                          .+..++|++|+.+.+.+.++.+.+++.+.+++.+.+.+.+|+.+|.+++|.||+||++|+|+++.. |+||.|...
T Consensus       396 ----~~t~vigr~P~~~v~~~~~~~q~~~~~~~el~~l~~~a~ka~~~y~rtr~~~s~es~kR~ke~~~~~g~~~~~~~~  471 (529)
T KOG0337|consen  396 ----DDTTVIGRSPQSLVSLESEGHQSILESNRELQVLARTADKAEMLYTRTRPSPSPESLKRAKEMISSKGLHPRFKSF  471 (529)
T ss_pred             ----ccceeeccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHhhhcccCCCcccccc
Confidence                122589999999999999999999999999999999999999999999999999999999999876 999999988


Q ss_pred             ccchhHHHHHHHHHHhccCCccceeecccccccccccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 006284          490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVH  552 (652)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  552 (652)
                      .+..|.+...|+.++++||+++||||++.            +   .+|  ||.+++..|.+++
T Consensus       472 ~e~~e~e~~~~~~kik~~r~~~tiFe~~~------------~---~~m--kr~k~~~ai~~rk  517 (529)
T KOG0337|consen  472 GENEEKEKLDILYKIKNYRSRETIFEINK------------S---DVM--KREKFEFAIIKRK  517 (529)
T ss_pred             cchhhHHhhHHHHHHhhcccchhhhhhhh------------h---HHH--HhhhcchhHHHHH
Confidence            88888888999999999999999999973            1   388  7888887775554

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>PF08147 DBP10CT: DBP10CT (NUC160) domain; InterPro: IPR012541 This C-terminal domain is found in the Dbp10p subfamily of hypothetical RNA helicases [] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2 Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>COG4626 Phage terminase-like protein, large subunit [General function prediction only] Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00665 DnaB replicative DNA helicase Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion Back     alignment and domain information
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] Back     alignment and domain information
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK13764 ATPase; Provisional Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>PRK05748 replicative DNA helicase; Provisional Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK13897 type IV secretion system component VirD4; Provisional Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated Back     alignment and domain information
>PHA00012 I assembly protein Back     alignment and domain information
>PRK08006 replicative DNA helicase; Provisional Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14516 AAA_35: AAA-like domain Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 Back     alignment and domain information
>PRK07413 hypothetical protein; Validated Back     alignment and domain information
>PRK07004 replicative DNA helicase; Provisional Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2 Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PF12846 AAA_10: AAA-like domain Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PHA00350 putative assembly protein Back     alignment and domain information
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms Back     alignment and domain information
>PRK13850 type IV secretion system protein VirD4; Provisional Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05595 replicative DNA helicase; Provisional Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query652
1hv8_A367 Crystal Structure Of A Dead Box Protein From The Hy 5e-56
3eiq_A414 Crystal Structure Of Pdcd4-eif4a Length = 414 3e-50
2zu6_A388 Crystal Structure Of The Eif4a-Pdcd4 Complex Length 4e-50
2db3_A434 Structural Basis For Rna Unwinding By The Dead-Box 4e-50
2j0q_A410 The Crystal Structure Of The Exon Junction Complex 1e-48
2xb2_A411 Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar 1e-48
2j0u_A374 The Crystal Structure Of Eif4aiii-Barentsz Complex 1e-48
2hyi_C413 Structure Of The Human Exon Junction Complex With A 2e-48
2hxy_A391 Crystal Structure Of Human Apo-Eif4aiii Length = 39 2e-48
2vso_A395 Crystal Structure Of A Translation Initiation Compl 2e-48
2j0u_B374 The Crystal Structure Of Eif4aiii-Barentsz Complex 3e-48
2z0m_A337 Crystal Structure Of Hypothetical Atp-Dependent Rna 2e-47
1fuu_A394 Yeast Initiation Factor 4a Length = 394 2e-46
2i4i_A417 Crystal Structure Of Human Dead-Box Rna Helicase Dd 3e-42
1s2m_A400 Crystal Structure Of The Dead Box Protein Dhh1p Len 1e-41
3sqw_A579 Structure Of Mss116p (Nte Deletion) Bound To Ssrna 6e-41
3sqx_A512 Structure Of Mss116p (Nte And C-Tail Double Deletio 7e-41
3i5x_A563 Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len 1e-40
3fmp_B479 Crystal Structure Of The Nucleoporin Nup214 In Comp 4e-39
3ews_A445 Human Dead-Box Rna-Helicase Ddx19 In Complex With A 5e-39
3g0h_A424 Human Dead-box Rna Helicase Ddx19, In Complex With 6e-39
3fht_A412 Crystal Structure Of Human Dbp5 In Complex With Amp 7e-39
3pew_A395 S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 1e-38
3pey_A395 S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length 2e-38
2pl3_A236 Human Dead-Box Rna Helicase Ddx10, Dead Domain In C 7e-37
1xtk_A390 Structure Of Decd To Dead Mutation Of Human Uap56 L 8e-36
1xti_A391 Structure Of Wildtype Human Uap56 Length = 391 2e-35
1xtj_A386 Structure Of Human Uap56 In Complex With Adp Length 2e-35
3ber_A249 Human Dead-Box Rna-Helicase Ddx47, Conserved Domain 9e-35
1wrb_A253 Crystal Structure Of The N-Terminal Reca-Like Domai 2e-34
2gxq_A207 Hera N-Terminal Domain In Complex With Amp, Crystal 8e-34
3mwj_A207 Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap 2e-33
4a4d_A253 Crystal Structure Of The N-Terminal Domain Of The H 4e-33
3fe2_A242 Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D 5e-33
3ly5_A262 Ddx18 Dead-Domain Length = 262 7e-33
3iuy_A228 Crystal Structure Of Ddx53 Dead-Box Domain Length = 2e-31
3fho_B508 Structure Of S. Pombe Dbp5 Length = 508 3e-31
3bor_A237 Crystal Structure Of The Deadc Domain Of Human Tran 1e-30
2g9n_A221 Structure Of The Dead Domain Of Human Eukaryotic In 1e-28
1vec_A206 Crystal Structure Of The N-Terminal Domain Of RckP5 2e-28
1qde_A224 Crystal Structure Of The Atpase Domain Of Translati 4e-27
1qva_A223 Yeast Initiation Factor 4a N-Terminal Domain Length 3e-26
3fmo_B300 Crystal Structure Of The Nucleoporin Nup214 In Comp 1e-25
3fhc_B235 Crystal Structure Of Human Dbp5 In Complex With Nup 1e-25
1q0u_A219 Crystal Structure Of The Bstdead N-Terminal Domain 3e-25
1t6n_A220 Crystal Structure Of The N-Terminal Domain Of Human 5e-23
3dkp_A245 Human Dead-Box Rna-Helicase Ddx52, Conserved Domain 1e-22
2kbe_A226 Solution Structure Of Amino-Terminal Domain Of Dbp5 1e-22
2oxc_A230 Human Dead-Box Rna Helicase Ddx20, Dead Domain In C 4e-22
1fuk_A165 Crystal Structure Of The Carboxy Terminal Domain Of 1e-14
2yjt_D170 Crystal Structure Of E. Coli Dead-Box Protein Srmb 1e-12
2p6n_A191 Human Dead-box Rna Helicase Ddx41, Helicase Domain 1e-11
2jgn_A185 Ddx3 Helicase Domain Length = 185 5e-11
2hjv_A163 Structure Of The Second Domain (Residues 207-368) O 6e-11
3peu_A188 S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To 9e-11
3gfp_A189 Structure Of The C-Terminal Domain Of The Dead-Box 9e-11
2kbf_A187 Solution Structure Of Carboxyl-Terminal Domain Of D 1e-10
2rb4_A175 Crystal Structure Of The Helicase Domain Of Human D 9e-10
3i32_A300 Dimeric Structure Of A Hera Helicase Fragment Inclu 2e-08
4db4_A256 Mss116p Dead-Box Helicase Domain 2 Bound To A Chima 5e-08
4db2_C257 Mss116p Dead-Box Helicase Domain 2 Bound To An Rna 5e-08
4db2_A257 Mss116p Dead-Box Helicase Domain 2 Bound To An Rna 5e-08
2wax_A193 Structure Of The Human Ddx6 C-Terminal Domain In Co 9e-08
3eaq_A212 Novel Dimerization Motif In The Dead Box Rna Helica 1e-07
1t5i_A172 Crystal Structure Of The C-Terminal Domain Of Uap56 4e-05
1oyy_A523 Structure Of The Recq Catalytic Core Bound To Atp-G 6e-05
3tmi_A695 Structural Basis For Rna Recognition And Activation 6e-04
4ay2_A687 Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I 7e-04
2ykg_A696 Structural Insights Into Rna Recognition By Rig-I L 7e-04
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 Back     alignment and structure 
Iteration: 1

 Score =  215 bits (548), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 197/331 (59%), Gaps = 13/331 (3%)
Query: 25  FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA-DVVAMARTGSGKTAAFLVPMLQ 83
           F  LNLS N+  AI+ KG++ PT IQ K +PL L+   ++VA ARTGSGKTA+F +P+++
Sbjct: 8   FNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67
Query: 84  RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
            +N++    G+ A+IL+PTR+LA+Q     + L    +L+I+ + GG ++  Q + L +N
Sbjct: 68  LVNEN---NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KN 123
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
            +I++ TPGR++ H++    ++LK+V+Y + DEAD     GF + + KIL   +++++ L
Sbjct: 124 ANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRIL 182
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
           LFSAT P  +   AK    D   ++     KI+ +++ ++  + + E+  AL  +++   
Sbjct: 183 LFSATXPREILNLAKKYXGDYSFIK----AKINANIEQSYVEVNENERFEALCRLLK--- 235
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
           + +   L+F  TK   + L    R+ G +    +GD+ Q  R+  +  F+ +K   LI T
Sbjct: 236 NKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT 295
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
           DV +RGID+  L+ VIN+  P  P+ + HR+
Sbjct: 296 DVXSRGIDVNDLNCVINYHLPQNPESYXHRI 326
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 Back     alignment and structure
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 Back     alignment and structure
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 Back     alignment and structure
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 Back     alignment and structure
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 Back     alignment and structure
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 Back     alignment and structure
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 Back     alignment and structure
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 Back     alignment and structure
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 Back     alignment and structure
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 Back     alignment and structure
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 Back     alignment and structure
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 Back     alignment and structure
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 Back     alignment and structure
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 Back     alignment and structure
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 Back     alignment and structure
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 Back     alignment and structure
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 Back     alignment and structure
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 Back     alignment and structure
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 Back     alignment and structure
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 Back     alignment and structure
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 Back     alignment and structure
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 Back     alignment and structure
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 Back     alignment and structure
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 Back     alignment and structure
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 Back     alignment and structure
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 Back     alignment and structure
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 Back     alignment and structure
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 Back     alignment and structure
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 Back     alignment and structure
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 Back     alignment and structure
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 Back     alignment and structure
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 Back     alignment and structure
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 Back     alignment and structure
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 Back     alignment and structure
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 Back     alignment and structure
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 Back     alignment and structure
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 Back     alignment and structure
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 Back     alignment and structure
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 Back     alignment and structure
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 Back     alignment and structure
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 Back     alignment and structure
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 Back     alignment and structure
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 Back     alignment and structure
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 Back     alignment and structure
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 Back     alignment and structure
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 Back     alignment and structure
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 Back     alignment and structure
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 Back     alignment and structure
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 Back     alignment and structure
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 Back     alignment and structure
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 Back     alignment and structure
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 Back     alignment and structure
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 Back     alignment and structure
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 Back     alignment and structure
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 Back     alignment and structure
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 Back     alignment and structure
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 Back     alignment and structure
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 Back     alignment and structure
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 Back     alignment and structure
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 Back     alignment and structure
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 Back     alignment and structure
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 Back     alignment and structure
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of Rig-I Length = 695 Back     alignment and structure
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I Length = 687 Back     alignment and structure
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I Length = 696 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query652
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 1e-117
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 1e-115
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 1e-115
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 1e-114
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 1e-113
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 1e-113
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 1e-111
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 1e-108
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 1e-108
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 1e-108
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 1e-107
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 1e-106
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 1e-103
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 1e-102
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 1e-101
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 1e-100
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 2e-85
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 1e-82
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 4e-78
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 7e-74
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 5e-72
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 2e-71
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 4e-70
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 7e-70
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 1e-69
3bor_A237 Human initiation factor 4A-II; translation initiat 3e-69
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 9e-69
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 2e-66
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 5e-66
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 5e-64
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 6e-64
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 3e-37
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 6e-37
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 1e-35
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 3e-35
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 6e-34
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 1e-33
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 4e-33
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 2e-32
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 6e-32
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 8e-19
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 3e-17
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 1e-16
1yks_A440 Genome polyprotein [contains: flavivirin protease 1e-16
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 3e-16
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 3e-15
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 2e-12
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 2e-12
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 3e-12
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 5e-12
3b6e_A216 Interferon-induced helicase C domain-containing P; 1e-11
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 3e-11
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 7e-08
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 1e-10
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 4e-06
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 1e-10
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 2e-08
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 2e-10
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 2e-07
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 4e-09
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 6e-09
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 9e-09
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 2e-08
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 4e-07
3h1t_A590 Type I site-specific restriction-modification syst 1e-06
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 8e-06
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 4e-05
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 8e-05
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 Back     alignment and structure
 Score =  355 bits (914), Expect = e-117
 Identities = 111/382 (29%), Positives = 188/382 (49%), Gaps = 6/382 (1%)

Query: 19  KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
            +K   FE   L   +   I   G++ P+PIQ + +P+ ++G D++A A+ G+GKTAAF+
Sbjct: 17  NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFV 76

Query: 79  VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
           +P L+++   + +  ++ALI+ PTR+LALQT +  + LG++  +   +  GG ++     
Sbjct: 77  IPTLEKVKPKLNK--IQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 134

Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
            L +   I++ TPGR++   S  +   L      + DEAD +    F   + +IL  L  
Sbjct: 135 RLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP 193

Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
             Q+LLFSAT P  + EF    L  P+ + L  +      +   +  + + +K   L  +
Sbjct: 194 THQSLLFSATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFVEERQKLHCLNTL 252

Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
             +      Q +IF ++ + VE L     + G      +  M Q  R      FR  K  
Sbjct: 253 FSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR 310

Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
            L+ +D+  RGIDI  ++ VIN+DFP   + ++HR+GR+ R G  G A + +   D   L
Sbjct: 311 TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNL 370

Query: 379 LDLHLFLSKPIRAAPSEEEVLL 400
             +   L   I A P+  +  L
Sbjct: 371 YKIEQELGTEIAAIPATIDKSL 392
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Length = 590 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Length = 620 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query652
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 100.0
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 100.0
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 100.0
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 100.0
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 100.0
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 100.0
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 100.0
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 100.0
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 100.0
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 100.0
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 100.0
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 100.0
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 100.0
1yks_A440 Genome polyprotein [contains: flavivirin protease 100.0
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 100.0
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 100.0
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 100.0
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 100.0
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 100.0
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 100.0
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 100.0
3h1t_A590 Type I site-specific restriction-modification syst 100.0
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 100.0
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 100.0
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 100.0
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 100.0
3bor_A237 Human initiation factor 4A-II; translation initiat 100.0
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 100.0
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 100.0
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 100.0
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 100.0
3jux_A822 Protein translocase subunit SECA; protein transloc 100.0
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 100.0
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 100.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 100.0
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 100.0
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 100.0
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.97
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.97
2ipc_A997 Preprotein translocase SECA subunit; nucleotide bi 99.97
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.96
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.95
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.95
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.95
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.94
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.94
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.94
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.94
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.94
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.93
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.84
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.9
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.89
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 99.89
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 99.88
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.86
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 99.79
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.79
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.75
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 98.88
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 98.16
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 98.1
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 98.07
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 98.04
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 97.97
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.92
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 97.9
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 97.69
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 97.14
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 96.88
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 96.65
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 96.6
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 96.34
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 96.33
2kjq_A149 DNAA-related protein; solution structure, NESG, st 96.18
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 95.99
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 95.93
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 95.64
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 95.53
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 95.34
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 95.22
1pjr_A 724 PCRA; DNA repair, DNA replication, SOS response, h 95.11
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 95.07
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 95.04
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 94.91
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 94.86
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 94.73
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 94.68
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 94.43
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 94.37
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 94.35
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 94.34
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 94.34
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 94.33
3bos_A242 Putative DNA replication factor; P-loop containing 94.31
2v1u_A387 Cell division control protein 6 homolog; DNA repli 94.3
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 94.27
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 94.27
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 94.18
2chg_A226 Replication factor C small subunit; DNA-binding pr 94.15
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 94.09
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 94.0
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 93.87
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 93.74
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 93.7
2zpa_A671 Uncharacterized protein YPFI; RNA modification enz 93.68
3co5_A143 Putative two-component system transcriptional RES 93.38
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 93.34
2qgz_A308 Helicase loader, putative primosome component; str 93.3
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 93.18
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 92.61
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 92.52
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 92.51
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 92.49
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 92.28
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 92.28
2r6a_A454 DNAB helicase, replicative helicase; replication, 92.16
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 92.15
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 91.81
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 91.72
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 91.72
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 91.69
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 91.66
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 91.64
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 91.63
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 91.61
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 91.44
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 91.4
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 91.26
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 90.93
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 90.87
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 90.81
2gno_A305 DNA polymerase III, gamma subunit-related protein; 90.45
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 89.99
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 89.8
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 89.77
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 89.76
3pvs_A447 Replication-associated recombination protein A; ma 89.73
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 89.35
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 89.3
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 89.29
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 89.27
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 89.26
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 89.15
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 89.14
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 88.86
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 88.66
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 88.28
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 88.17
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 88.1
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 87.92
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 87.62
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 87.53
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 87.46
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 87.29
3hjh_A483 Transcription-repair-coupling factor; MFD, mutatio 86.8
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 86.68
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 86.61
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 86.49
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 86.4
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 85.36
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 85.3
3cmu_A2050 Protein RECA, recombinase A; homologous recombinat 85.26
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 84.98
2chq_A319 Replication factor C small subunit; DNA-binding pr 84.67
2l8b_A189 Protein TRAI, DNA helicase I; RECD, hydrolase; NMR 84.54
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 84.09
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 83.82
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 83.72
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 83.43
2z43_A324 DNA repair and recombination protein RADA; archaea 83.3
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 83.28
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 83.2
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 82.98
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 82.92
2fna_A357 Conserved hypothetical protein; structural genomic 82.89
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 82.72
3io5_A333 Recombination and repair protein; storage dimer, i 82.5
3bor_A237 Human initiation factor 4A-II; translation initiat 82.07
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 82.02
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 81.96
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 81.82
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 81.75
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 81.43
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 81.42
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 81.37
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 80.98
1e9r_A437 Conjugal transfer protein TRWB; coupling protein, 80.92
1xp8_A366 RECA protein, recombinase A; recombination, radior 80.57
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=1.2e-62  Score=540.88  Aligned_cols=368  Identities=34%  Similarity=0.583  Sum_probs=338.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC---CCCCeEEEE
Q 006284           22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRALI   98 (652)
Q Consensus        22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~---~~~g~~~Li   98 (652)
                      ..+|++++|++.++++|.++||..|||+|+++||.+++|+|++++|+||||||++|++|+++.+....   ...++++||
T Consensus        55 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li  134 (434)
T 2db3_A           55 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI  134 (434)
T ss_dssp             CCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred             cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence            45799999999999999999999999999999999999999999999999999999999999987542   234678999


Q ss_pred             EcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284           99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD  178 (652)
Q Consensus        99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah  178 (652)
                      |+|||+|+.|+++.+++++...++++.+++||.....+...+..+++|+|+|||+|++++.. ..+.+.++++|||||||
T Consensus       135 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah  213 (434)
T 2db3_A          135 VSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLDEAD  213 (434)
T ss_dssp             ECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEETHH
T ss_pred             EecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEccHh
Confidence            99999999999999999999889999999999999988888888999999999999999886 46778999999999999


Q ss_pred             ccccCChHHHHHHHHHhc--CCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHH
Q 006284          179 CLFGMGFAEQLHKILGQL--SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL  256 (652)
Q Consensus       179 ~l~~~g~~~~l~~il~~l--~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll  256 (652)
                      +++++||...+..++..+  ++.+|+++||||+|+.+..++..++.+|..+.+.........+.+.+..+....|...|.
T Consensus       214 ~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~  293 (434)
T 2db3_A          214 RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLI  293 (434)
T ss_dssp             HHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHH
T ss_pred             hhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHH
Confidence            999999999999999885  678999999999999999999999999988888776666778888899999999999999


Q ss_pred             HHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCc
Q 006284          257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD  336 (652)
Q Consensus       257 ~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~  336 (652)
                      .++...   ..++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus       294 ~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~  370 (434)
T 2db3_A          294 EILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK  370 (434)
T ss_dssp             HHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred             HHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence            999875   34599999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCChhHHHHHHcccccCCCccEEEEEecc-ccHHHHHHHHHHhCCCCcCCC
Q 006284          337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAAP  393 (652)
Q Consensus       337 ~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~-~e~~~l~~l~~~l~~~~~~~p  393 (652)
                      +||+||+|.++..|+||+||+||+|+.|.|++|+++ .+...+.++...+.......|
T Consensus       371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp  428 (434)
T 2db3_A          371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP  428 (434)
T ss_dssp             EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred             EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999995 566777777777765555444
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 652
d1hv8a1208 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase 4e-51
d2j0sa1222 c.37.1.19 (A:22-243) Probable ATP-dependent RNA he 8e-44
d2g9na1218 c.37.1.19 (A:21-238) Initiation factor 4a {Human ( 9e-44
d1qdea_212 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 2e-43
d1t6na_207 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 2e-43
d1wrba1238 c.37.1.19 (A:164-401) putative ATP-dependent RNA h 3e-43
d1veca_206 c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma 1e-40
d1s2ma1206 c.37.1.19 (A:46-251) Putative ATP-dependent RNA he 1e-38
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 4e-36
d1q0ua_209 c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR 8e-34
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 1e-30
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 2e-27
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 7e-26
d1fuka_162 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 2e-25
d1a1va2299 c.37.1.14 (A:326-624) HCV helicase domain {Human h 7e-24
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 5e-22
d2j0sa2168 c.37.1.19 (A:244-411) Probable ATP-dependent RNA h 1e-19
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 5e-18
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 2e-17
d1gkub2248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 9e-17
d1oywa3200 c.37.1.19 (A:207-406) RecQ helicase domain {Escher 9e-17
d2rb4a1168 c.37.1.19 (A:307-474) ATP-dependent RNA helicase D 2e-16
d1t5ia_168 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 9e-15
d1tf5a4175 c.37.1.19 (A:396-570) Translocation ATPase SecA, n 1e-14
d1jr6a_138 c.37.1.14 (A:) HCV helicase domain {Human hepatiti 4e-14
d1t5la2181 c.37.1.19 (A:415-595) Nucleotide excision repair e 9e-14
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 1e-13
d1s2ma2171 c.37.1.19 (A:252-422) Putative ATP-dependent RNA h 2e-13
d1c4oa2174 c.37.1.19 (A:410-583) Nucleotide excision repair e 7e-11
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 6e-10
d1rifa_282 c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 8e-05
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 7e-04
d1yksa2299 c.37.1.14 (A:325-623) YFV helicase domain {Yellow 0.002
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  173 bits (440), Expect = 4e-51
 Identities = 79/208 (37%), Positives = 132/208 (63%), Gaps = 6/208 (2%)

Query: 25  FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQ 83
           F  LNLS N+  AI+ KG++ PT IQ K +PL L+   ++VA ARTGSGKTA+F +P+++
Sbjct: 6   FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65

Query: 84  RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
                    G+ A+IL+PTR+LA+Q     + L    +L+I+ + GG ++  Q + L +N
Sbjct: 66  ---LVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KN 121

Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
            +I++ TPGR++ H++    ++LK+V+Y + DEAD +  MGF + + KIL   +++++ L
Sbjct: 122 ANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRIL 180

Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDV 231
           LFSAT+P  +   AK  + D   ++  +
Sbjct: 181 LFSATMPREILNLAKKYMGDYSFIKAKI 208
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query652
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 100.0
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 100.0
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 100.0
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 100.0
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 100.0
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 100.0
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 100.0
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 100.0
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 100.0
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 100.0
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.97
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.96
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.96
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.96
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.96
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.95
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.94
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.93
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.93
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.93
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.91
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.91
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.89
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.84
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.81
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.81
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.77
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.76
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.74
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.73
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.72
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.71
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.7
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.69
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.68
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.63
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.56
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.46
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.44
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 99.3
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.24
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.23
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.01
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 98.74
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 98.42
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 98.33
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.97
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 97.34
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 96.98
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 96.94
d1ls1a2207 GTPase domain of the signal sequence recognition p 96.68
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 96.63
d2qy9a2211 GTPase domain of the signal recognition particle r 96.3
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 96.21
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 96.02
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 95.79
d1okkd2207 GTPase domain of the signal recognition particle r 95.73
d1j8yf2211 GTPase domain of the signal sequence recognition p 95.15
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 95.01
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 94.79
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 94.77
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 94.65
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 94.36
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 94.31
d1vmaa2213 GTPase domain of the signal recognition particle r 94.13
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 94.04
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 93.66
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 93.25
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 93.06
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 93.03
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 92.96
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 92.9
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 92.77
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 92.0
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 91.96
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 91.58
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 91.56
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 91.41
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 91.31
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 91.27
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 91.07
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 90.84
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 90.6
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 89.52
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 89.41
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 89.24
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 88.7
d1g5ta_157 ATP:corrinoid adenosyltransferase CobA {Salmonella 88.38
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 88.17
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 87.71
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 86.98
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 86.96
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 86.92
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 85.63
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 84.75
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 84.15
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 83.59
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 83.24
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 82.98
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 81.17
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 80.27
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-43  Score=348.34  Aligned_cols=208  Identities=30%  Similarity=0.552  Sum_probs=195.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284           20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL   99 (652)
Q Consensus        20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL   99 (652)
                      ....+|++|||++.++++|.++||..|||+|..+||.+++|+|+++.|+||||||+||++|+++.+...  ..+++++|+
T Consensus        14 ~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~--~~~~~~lil   91 (222)
T d2j0sa1          14 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQALIL   91 (222)
T ss_dssp             CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--SCSCCEEEE
T ss_pred             CCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhccccccccccc--ccCceeEEe
Confidence            445689999999999999999999999999999999999999999999999999999999999998754  346789999


Q ss_pred             cCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284          100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC  179 (652)
Q Consensus       100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~  179 (652)
                      +||||||.|+++.+..++++.++++..++||.....+...+..+++|+|+|||||.+++.. ..+.+++++++|+||||+
T Consensus        92 ~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~-~~~~~~~l~~lVlDEaD~  170 (222)
T d2j0sa1          92 APTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADE  170 (222)
T ss_dssp             CSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHH
T ss_pred             cchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccc-cccccccceeeeecchhH
Confidence            9999999999999999999999999999999999999888888999999999999999877 578899999999999999


Q ss_pred             cccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeec
Q 006284          180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD  230 (652)
Q Consensus       180 l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~  230 (652)
                      +++.||...+..|+..+|..+|+++||||+|+.+.++++.++.+|..|.+.
T Consensus       171 ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V~  221 (222)
T d2j0sa1         171 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK  221 (222)
T ss_dssp             HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred             hhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEEe
Confidence            999999999999999999999999999999999999999999999877653
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure