Citrus Sinensis ID: 006354

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
Protein Sequence
MGDFAGSSFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQSCVTKLRLSMRFNKLFPR
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEccccccEEcccccccccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHcccccEEEEccccHHHHHHHHcccccccEEEEEccccccccccccccccccEEEEHHHHHHHcccccccccccccccEEEEEEcccccccccEEEEcHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccccEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEEccccccccccccccccHHHHccccccccccccccEEEEcccccEEEEEcccccEEcccccEEccccHHHHHcccccEEEEEEEcccccEEEEccHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccEEccccccccccEEccccccccccccccccHHHHHHHHHHHHccccccccccccccHcccccccccEEEEEcccccEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHcccEEEEHHHcccHHHHHHHHccccEEEEEEcHHHHHHHHHHHHcccccEEEEEEccccccccccccccccEEEEEEHHHHHHHcccccccccccccccEEEEEEEccccccccEEEEEcHHHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHHHHHHHHcccEEcccccccccccccccHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHccccEEEccccccccccEEEEcccccccccccccccccEEEEEEccccccccccccccccEEEEccccccEcccccHHHHHHHHcHccccccEEEccccccEccccEEEEEEccccHHEHccccEccHHHHHHHHHccccccEEEEEccccEEEEEccccccHHHHHHHcccccHHHHccc
Coil and Loop (DISEMBL)
mgdfagssfdselltekgsgiYGIVGAAIVALLIPVLLSMMVARKKKvkqrgvpvevggepgyairnaqipelvevpwkGASTMAALFEQsckshpqdrflgkrkllgkdfvtasdgrkfeklhlgdyewQTYGEVFDRACSFAsglvnfghnVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYfendgsekdsgvsggisnwTVSSFSEVeklgkrspvdpslpsqngVAVIMYTsgstglpkgvmithGNIVATAAAIKtlipnpgrsdvylAYLPLAHVLELAAESIMLCAGCAigygstltmtdtsskikkgtkgdvsvlkptlmaAVPAIFDRVREGVVKKVeekggltknlfNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIrfmicggaplsadSQRFINICmgapigqaygltetcagstfsewddpsvgrvgppvpccyiklvswdeggyktsdkpmprgeivvggfnvtagyfnnpgktsevykvdergmcwfytgdigqvypdgcleIIDRKKDIVKLQhgeyislgkipstttVLPLLFHHIRlwrngpmklasSTKIFQSCVTKLRLSMrfnklfpr
Flexible Loop (DISEMBL)
mgdfagssfDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKkkvkqrgvpvevggepgyairnaQIPELVEVPWKGASTMAALFEQSCkshpqdrflgkrklLGKDFvtasdgrkfeklHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFendgsekdsgvsggisNWTVSSFSEVEKlgkrspvdpslpsqNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMtdtsskikkgtkgdvsvlkptlMAAVPAIFDRVREGVVKkveekggltknlfnigykrRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGyktsdkpmprgEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGeyislgkipsttTVLPLLFHHIRLWRNGPMKLASSTKIFQSCVTKlrlsmrfnklfpr
Low Complexity Region (SEG)
MGDFAGSSFDSELLTEKGSGIYgivgaaivallipvllSMMVARKKKVKQRgvpvevggepgYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDskqlkklsavssslkTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRegvvkkveekggLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQSCVTKLRLSMRFNKLFPR
Disordered region (IsUnstruct)
***************EKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE****************W*************************GVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDT***I**GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSD**MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQSCVTKLRLSMRFN*****
Disordered Region (DISOPRED)
********FDSELLTEKGSGIYGIVGAAIVALLIPVLLSMM*************************NAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKR******LPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQSCVTKLRLSMRFNKLFPR
Disordered Region (DISEMBL)
MGDFAGSSFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARK********PVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSE************SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQSCVTKLRLSMRFNKLFPR
Disordered Region (DISPRO)
*******SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQSCVTKLRLSMRFN*LFPR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDFAGSSFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQSCVTKLRLSMRFNKLFPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	649	2.2.26 [Sep-21-2011]
Q9SJD4	720	Long chain acyl-CoA synth	yes	no	0.856	0.772	0.735	0.0
Q9CAP8	691	Long chain acyl-CoA synth	no	no	0.881	0.827	0.638	0.0
O60488	711	Long-chain-fatty-acid--Co	yes	no	0.875	0.798	0.440	1e-138
O35547	670	Long-chain-fatty-acid--Co	yes	no	0.830	0.804	0.457	1e-137
Q9QUJ7	711	Long-chain-fatty-acid--Co	yes	no	0.875	0.798	0.444	1e-137
O95573	720	Long-chain-fatty-acid--Co	no	no	0.879	0.793	0.435	1e-137
Q63151	720	Long-chain-fatty-acid--Co	no	no	0.885	0.798	0.441	1e-136
Q9CZW4	720	Long-chain-fatty-acid--Co	no	no	0.885	0.798	0.439	1e-136
Q5R668	720	Long-chain-fatty-acid--Co	no	no	0.879	0.793	0.433	1e-136
O60135	676	Long-chain-fatty-acid--Co	yes	no	0.793	0.761	0.351	2e-84

>sp|Q9SJD4|LACS8_ARATH Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=2 SV=1

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/556 (73%), Positives = 485/556 (87%)

Query: 46  KKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRK 105
           KK K+RGVP++VGGE GY +R+A+ PELV+VPW+GA+TM ALFEQSCK + +DR LG R+
Sbjct: 45  KKGKKRGVPIKVGGEEGYTMRHARAPELVDVPWEGAATMPALFEQSCKKYSKDRLLGTRE 104

Query: 106 LLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC 165
            + K+F+TASDGRKFEKLHLG+Y+WQ+YGEVF+R C+FASGLVN GHNVD R AI ++T 
Sbjct: 105 FIDKEFITASDGRKFEKLHLGEYKWQSYGEVFERVCNFASGLVNVGHNVDDRVAIFSDTR 164

Query: 166 VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT 225
            EWFIAFQGCFRQSITVVTIY+SLGE+ALI+SLNET+V+TLICDSKQLKKLSA+ SSLKT
Sbjct: 165 AEWFIAFQGCFRQSITVVTIYASLGEEALIYSLNETRVSTLICDSKQLKKLSAIQSSLKT 224

Query: 226 IKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSG 285
           +KN+IY E DG +  S     + + TVSS SEVEKLG+++ V P LPS+NGVAVIM+TSG
Sbjct: 225 VKNIIYIEEDGVDVASSDVNSMGDITVSSISEVEKLGQKNAVQPILPSKNGVAVIMFTSG 284

Query: 286 STGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAI 345
           STGLPKGVMITHGN+VATAA +  ++P   ++D Y+AYLPLAHV EL AE ++  +G AI
Sbjct: 285 STGLPKGVMITHGNLVATAAGVMKVVPKLDKNDTYIAYLPLAHVFELEAEIVVFTSGSAI 344

Query: 346 GYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLF 405
           GYGS +T+TDTS+K+KKGTKGDVS LKPT+M AVPAI DRVREGV+KKVEEKGG+ K LF
Sbjct: 345 GYGSAMTLTDTSNKVKKGTKGDVSALKPTIMTAVPAILDRVREGVLKKVEEKGGMAKTLF 404

Query: 406 NIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465
           +  YKRRLAAV+GSWFGAWGLE+MLWDA+VFK +RAVLGG IRFM+ GGAPLS DSQRFI
Sbjct: 405 DFAYKRRLAAVDGSWFGAWGLEKMLWDALVFKKIRAVLGGHIRFMLVGGAPLSPDSQRFI 464

Query: 466 NICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM 525
           NICMG+PIGQ YGLTETCAG+TFSEWDDP+VGRVGPP+PC Y+KLVSW+EGGY+ SDKPM
Sbjct: 465 NICMGSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYVKLVSWEEGGYRISDKPM 524

Query: 526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDI 585
           PRGEIVVGG +VTAGYFNN  KT EVYKVDE+G  WFYTGDIG+ +PDGCLE+IDRKKDI
Sbjct: 525 PRGEIVVGGNSVTAGYFNNQEKTDEVYKVDEKGTRWFYTGDIGRFHPDGCLEVIDRKKDI 584

Query: 586 VKLQHGEYISLGKIPS 601
           VKLQHGEY+SLGK+ +
Sbjct: 585 VKLQHGEYVSLGKVEA 600

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9CAP8|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/578 (63%), Positives = 463/578 (80%), Gaps = 6/578 (1%)

Query: 32  LLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQS 91
           +++P+ L+ +V + KK K+RGV V+VGGEPGYAIRN +  E V   W+  ST+  LFE S
Sbjct: 8   VIVPLALTFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTLPELFEIS 67

Query: 92  CKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFG 151
           C +H    FLG RKL+ ++  T+ DG+ FEKLHLGDYEW T+G+  +  C FASGLV  G
Sbjct: 68  CNAHSDRVFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFASGLVQIG 127

Query: 152 HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211
           H  + R AI A+T  EWFI+ QGCFR+++TVVTIYSSLGE+AL HSLNET+VTT+IC SK
Sbjct: 128 HKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVTTVICGSK 187

Query: 212 QLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSL 271
           +LKKL  +S  L+T+K VI  ++   E  S V+   SNW  +SF++V+KLG+ +PVDP+ 
Sbjct: 188 ELKKLMDISQQLETVKRVICMDD---EFPSDVN---SNWMATSFTDVQKLGRENPVDPNF 241

Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLE 331
           P    VAVIMYTSGSTGLPKGVM+THGN++AT +A+ T++P+ G+ D+Y+AYLPLAH+LE
Sbjct: 242 PLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLPLAHILE 301

Query: 332 LAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391
           LAAES+M   G AIGYGS LT+TDTS+KIKKGTKGDV+ LKPT+M AVPAI DRVR+GV 
Sbjct: 302 LAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDRVRDGVR 361

Query: 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI 451
           KKV+ KGGL+K LF+  Y RRL+A+ GSWFGAWGLE++LWD +VF+ +RAVLGG+IR+++
Sbjct: 362 KKVDAKGGLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGGQIRYLL 421

Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
            GGAPLS D+QRFINIC+GAPIGQ YGLTETCAG TFSE++D SVGRVG P+PC ++KLV
Sbjct: 422 SGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPCSFVKLV 481

Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY 571
            W EGGY TSDKPMPRGEIV+GG N+T GYF N  KT EVYKVDE+GM WFYTGDIG+ +
Sbjct: 482 DWAEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYTGDIGRFH 541

Query: 572 PDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLL 609
           PDGCLEIIDRKKDIVKLQHGEY+SLGK+ +  ++ P +
Sbjct: 542 PDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSISPYV 579

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O60488|ACSL4_HUMAN Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2

 Score =  491 bits (1264), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/583 (44%), Positives = 351/583 (60%), Gaps = 15/583 (2%)

Query: 32  LLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRN-AQIPELVEVPWKGASTMAALFEQ 90
           + IP        +K  + +R        +PG   R+      L  +   GA T+  LF+ 
Sbjct: 26  IFIPWYFLTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDH 85

Query: 91  SCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF 150
           +     +   LG R++L ++     +G+ F+KL LG+Y+W  Y EV  R  +F SGL   
Sbjct: 86  AVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRRVNNFGSGLTAL 145

Query: 151 GHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210
           G       AI  ET  EW IA Q CF+ +  +VT+Y++LG++A++H LNE++ + LI   
Sbjct: 146 GLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLNESEASYLITSV 205

Query: 211 KQLK-KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--- 266
           + L+ KL      +  +K++IY +N    K     G    + + S   VE+LG       
Sbjct: 206 ELLESKLKTALLDISCVKHIIYVDNKAINKAEYPEG----FEIHSMQSVEELGSNPENLG 261

Query: 267 VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326
           + PS P+ + +A++MYTSGSTG PKGVM+ H N++A        IP  G  D Y+ YLPL
Sbjct: 262 IPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPL 321

Query: 327 AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386
           AHVLEL AE      GC IGY S LT++D SSKIKKG+KGD +VLKPTLMAAVP I DR+
Sbjct: 322 AHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRI 381

Query: 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGR 446
            + V+ KV+E   + K LF IGY  +L  ++       G +  L + ++FK V+A+LGG 
Sbjct: 382 YKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDAPLCNLLLFKKVKALLGGN 435

Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC 506
           +R M+ GGAPLS  + RF+N+C   PIGQ YGLTE+C   T +E  D + GRVG P+ CC
Sbjct: 436 VRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTTGRVGAPLICC 495

Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566
            IKL  W EGGY  +DKP PRGEIV+GG N++ GYF N  KT+E Y VDE G  WF TGD
Sbjct: 496 EIKLKDWQEGGYTINDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYSVDENGQRWFCTGD 555

Query: 567 IGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLL 609
           IG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +     PL+
Sbjct: 556 IGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLI 598

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O35547|ACSL4_RAT Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1

 Score =  490 bits (1262), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 254/555 (45%), Positives = 347/555 (62%), Gaps = 16/555 (2%)

Query: 59  GEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGR 118
           G P  ++ +     ++++P  GA T+  LF+ +     +   LG R++L ++     +G+
Sbjct: 15  GSPYRSVTHFDSLAVIDIP--GADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGK 72

Query: 119 KFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQ 178
            F+KL LG+Y+W  Y EV  R  +F SGL   G       AI  ET  EW IA Q CF+ 
Sbjct: 73  VFKKLILGNYKWINYLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKY 132

Query: 179 SITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDGS 237
           +  +VT+Y++LG++A++H LNE++ + LI   + L+ KL A    +  +K++IY +N   
Sbjct: 133 NFPLVTLYATLGKEAVVHGLNESEASYLITSVELLESKLKAALLDINCVKHIIYVDNKTI 192

Query: 238 EKDSGVSGGISNWTVSSFSEVEKLGKR---SPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
            +     G      + S   VE+LG +   S + PS P+ + +A++MYTSGSTG PKGVM
Sbjct: 193 NRAEYPEG----LEIHSMQSVEELGSKPENSSIPPSRPTPSDMAIVMYTSGSTGRPKGVM 248

Query: 295 ITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT 354
           + H N++A        IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++
Sbjct: 249 MHHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLS 308

Query: 355 DTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414
           D SSKIKKG+KGD +VLKPTLMAAVP I DR+ + V+ KV+E   + K LF IGY  +L 
Sbjct: 309 DQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLE 368

Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474
            ++       G +  L + I+FK V+A+LGG +R M+ GGAPLS  + RF+N+C   PIG
Sbjct: 369 QIKK------GYDAPLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIG 422

Query: 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG 534
           Q YGLTE+C   T +E  D + GRVG P+ CC IKL  W EGGY   DKP PRGEIV+GG
Sbjct: 423 QGYGLTESCGAGTVTEVTDYTTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGG 482

Query: 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
            N++ GYF N  KT+E Y VDE G  WF TGDIG+ +PDGCL+IIDRKKD+VKLQ GEY+
Sbjct: 483 QNISMGYFKNEEKTAEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYV 542

Query: 595 SLGKIPSTTTVLPLL 609
           SLGK+ +     PL+
Sbjct: 543 SLGKVEAALKNCPLI 557

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9QUJ7|ACSL4_MOUSE Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=2

 Score =  489 bits (1258), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/583 (44%), Positives = 350/583 (60%), Gaps = 15/583 (2%)

Query: 32  LLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRN-AQIPELVEVPWKGASTMAALFEQ 90
           + IP        +K  + +R        +PG   R+      L  +   GA T+  LF+ 
Sbjct: 26  IFIPWYFLTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDH 85

Query: 91  SCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF 150
           +     +   LG R++L ++     +G+ F+KL LG+Y+W  Y EV  R  +F SGL   
Sbjct: 86  AVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWINYLEVNCRVNNFGSGLTAL 145

Query: 151 GHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210
           G       AI  ET  EW IA Q CF+ +  +VT+Y++LG +A++H LNE++ + LI   
Sbjct: 146 GLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGREAVVHGLNESEASYLITSV 205

Query: 211 KQLK-KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--- 266
           + L+ KL A    +  +K++IY +N    +     G      + S   VE+LG +     
Sbjct: 206 ELLESKLKAALVDINCVKHIIYVDNKTINRAEYPEG----LEIHSMQSVEELGAKPENLS 261

Query: 267 VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326
           V PS P+ + +A++MYTSGSTG PKGVM+ H N++A        IP  G  D Y+ YLPL
Sbjct: 262 VPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPL 321

Query: 327 AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386
           AHVLEL AE      GC IGY S LT++D SSKIKKG+KGD +VLKPTLMAAVP I DR+
Sbjct: 322 AHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRI 381

Query: 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGR 446
            + V+ KV+E   + K LF IGY  +L  ++       G +  L + I+FK V+A+LGG 
Sbjct: 382 YKNVMSKVQEMNYVQKTLFKIGYDYKLEQIKK------GYDAPLCNLILFKKVKALLGGN 435

Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC 506
           +R M+ GGAPLS  + RF+N+C   PIGQ YGLTE+C   T +E  D + GRVG P+ CC
Sbjct: 436 VRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTTGRVGAPLICC 495

Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566
            IKL  W EGGY   DKP PRGEIV+GG N++ GYF N  KT+E Y VDE G  WF TGD
Sbjct: 496 EIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYCVDENGQRWFCTGD 555

Query: 567 IGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLL 609
           IG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +     PL+
Sbjct: 556 IGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLI 598

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O95573|ACSL3_HUMAN Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3

 Score =  488 bits (1256), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/600 (43%), Positives = 360/600 (60%), Gaps = 29/600 (4%)

Query: 21  IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
           I+ ++    +   IP        ++K  + +  PV    +  Y   N+ +  L  V + G
Sbjct: 26  IHFLISLYTILTYIPFYFFSESRQEKSNRIKAKPVNSKPDSAYRSVNS-LDGLASVLYPG 84

Query: 81  ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
             T+  +F  +       R LG R++L ++     +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85  CDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRA 144

Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
            +F +GL   G    T  AI  ET  EW IA Q CF  +  +VT+Y++LG  A++H+LNE
Sbjct: 145 FNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNE 204

Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT-------V 252
           T+VT +I   + L+ KL  + S +  ++++I            V G    W+       V
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHII-----------TVDGKPPTWSEFPKGIIV 253

Query: 253 SSFSEVEKLGKRSPVD---PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309
            + + VE LG ++ ++    S P  + +AVIMYTSGSTGLPKGVMI+H NI+A    +  
Sbjct: 254 HTMAAVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAE 313

Query: 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369
            IP  G  DVY+ YLPLAHVLEL+AE + L  GC IGY S  T+ D SSKIKKG+KGD S
Sbjct: 314 RIPELGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTS 373

Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM 429
           +LKPTLMAAVP I DR+ + V+ KV E     +NLF + Y  ++  +      + G    
Sbjct: 374 MLKPTLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQI------SKGRNTP 427

Query: 430 LWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFS 489
           L D+ VF+ VR++LGG IR ++CGGAPLSA +QRF+NIC   P+GQ YGLTE+    T S
Sbjct: 428 LCDSFVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTIS 487

Query: 490 EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549
           E  D + GRVG P+ CC IKL +W+EGGY  +DKP PRGEI++GG +VT GY+ N  KT 
Sbjct: 488 EVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQSVTMGYYKNEAKTK 547

Query: 550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLL 609
             +  DE G  W  TGDIG+  PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +    LPL+
Sbjct: 548 ADFFEDENGQRWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLV 607

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates (By similarity). Has mainly an anabolic role in energy metabolism. Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q63151|ACSL3_RAT Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1

 Score =  487 bits (1253), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/596 (44%), Positives = 357/596 (59%), Gaps = 21/596 (3%)

Query: 21  IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
           I+ I+    +   IP        ++K    +  PV    +  Y   N+ +  L  V + G
Sbjct: 26  IHFIISLYTILTYIPFYFLCESKQEKPNHIKAKPVSSKPDSAYRSVNS-MDGLASVLYPG 84

Query: 81  ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
             T+  +F  +       R LG R++L ++     +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85  CDTLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLSYEDVFIRA 144

Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
             F +GL   G       AI  ET  EW IA Q CF  +  +VT+Y++LG  A++H LNE
Sbjct: 145 LDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNE 204

Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDG---SEKDSGVSGGISNWTVSSFS 256
           T+VT +I   + L+ KL  + S +  ++++I  +      SE   GV        V + +
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTWSEFPKGV-------IVHTMA 257

Query: 257 EVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
            V+ LG ++ VD    S P  + +AVIMYTSGSTG+PKGVMI+H NI+A+   +   IP 
Sbjct: 258 AVQALGVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPR 317

Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
            G  DVY+ YLPLAHVLEL+AE + L  GC IGY S  T+ D SSKIKKG+KGD SVLKP
Sbjct: 318 LGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKP 377

Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
           TLMAAVP I DR+ + V+ KV E     +NLF + Y  ++  +      + G    L D 
Sbjct: 378 TLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQI------SKGCSTPLCDR 431

Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
            VF++VR +LGG IR ++CGGAPLSA +QRF+NIC   P+GQ YGLTE+    T +E  D
Sbjct: 432 FVFRNVRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD 491

Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
            + GRVG P+ CC IKL +W+EGGY  +DKP PRGEI++GG NVT GY+ N  KT   + 
Sbjct: 492 YNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKADFF 551

Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLL 609
            DE G  W  TGDIG+  PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +    LPL+
Sbjct: 552 EDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLI 607

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 is required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Has mainly an anabolic role in energy metabolism. Mediates hepatic lipogenesis. Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Both isoforms exhibit the same level of activity.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9CZW4|ACSL3_MOUSE Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=2

 Score =  486 bits (1251), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/596 (43%), Positives = 358/596 (60%), Gaps = 21/596 (3%)

Query: 21  IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
           I+ I+    +   IP        ++K  + +  PV    +  Y   N+ +  L  V + G
Sbjct: 26  IHFIISLYTILTYIPFYFLCESKQEKPNQIKAKPVSSKPDSAYRSINS-VDGLASVLYPG 84

Query: 81  ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
             T+  +F  +       R LG R++L ++     +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85  CDTLDKVFMYAKNKFKNKRLLGTREILNEEDEIQPNGKIFKKVILGHYNWLSYEDVFIRA 144

Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
             F +GL   G       AI  ET  EW IA Q CF  +  +VT+Y++LG  A++H LNE
Sbjct: 145 LDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNE 204

Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDG---SEKDSGVSGGISNWTVSSFS 256
           T+VT +I   + L+ KL  + S +  ++++I  +      SE   GV        V + +
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTWSEFPKGV-------IVHTMA 257

Query: 257 EVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
            V+ LG ++ V+    S P  + +AVIMYTSGSTG+PKGVMI+H NI+A+   +   IP 
Sbjct: 258 AVQALGVKANVEKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPR 317

Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
            G  DVY+ YLPLAHVLEL+AE + L  GC IGY S  T+ D SSKIKKG+KGD SVLKP
Sbjct: 318 LGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKP 377

Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
           TLMAAVP I DR+ + V+ KV E     +NLF + Y  ++  +      + G    L D 
Sbjct: 378 TLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQI------SKGCSTPLCDR 431

Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
            VF++VR +LGG IR ++CGGAPLSA +QRF+NIC   P+GQ YGLTE+    T +E  D
Sbjct: 432 FVFRNVRRLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD 491

Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
            + GRVG P+ CC IKL +W+EGGY  +DKP PRGEI++GG NVT GY+ N  KT   + 
Sbjct: 492 YNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKTDFF 551

Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLL 609
            DE G  W  TGDIG+  PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +    LPL+
Sbjct: 552 EDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLI 607

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q5R668|ACSL3_PONAB Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2

 Score =  485 bits (1248), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/600 (43%), Positives = 359/600 (59%), Gaps = 29/600 (4%)

Query: 21  IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
           I+ ++    +   IP        ++K  + +  PV    +  Y   N+ +  L  V + G
Sbjct: 26  IHFLISLYTILTYIPFYFFSESRQEKSNRIKAKPVNSKPDSAYRSVNS-LDGLASVLYPG 84

Query: 81  ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
             T+  +F  +       R LG R++L ++     +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85  CDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRA 144

Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
            +F +GL   G    T  AI  ET  EW IA Q CF  +  +VT+Y++LG  A++H+LNE
Sbjct: 145 FNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNE 204

Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT-------V 252
           T+VT +I   + L+ KL  + S +  ++++I            V G    W+       V
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHII-----------TVDGKPPTWSEFPKGIIV 253

Query: 253 SSFSEVEKLGKRSPVD---PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309
            + + VE LG ++ ++    S P  + +AVIMYTSGSTGLPKGVMI+H NI+A    +  
Sbjct: 254 HTMAAVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAE 313

Query: 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369
            IP  G  DVY+ YLPLAHVLEL+AE + L  GC IGY S  T+ D SSKIKKG+KGD S
Sbjct: 314 RIPELGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTS 373

Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM 429
           +LKPTLMAAVP I DR+ + V+ KV E     +NLF + Y  ++  +      + G    
Sbjct: 374 MLKPTLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQI------SKGRNTP 427

Query: 430 LWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFS 489
           L ++ VF+ VR++LGG IR ++CGGAPLSA +QRF+NIC   P+GQ YGLTE+    T S
Sbjct: 428 LCNSFVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTIS 487

Query: 490 EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549
           E  D + GRVG P+ CC IKL +W+EGGY  +DKP PRGEI++GG  VT GY+ N  KT 
Sbjct: 488 EVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQIVTMGYYKNEAKTK 547

Query: 550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLL 609
             +  DE G  W  TGDIG+  PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +    LPL+
Sbjct: 548 ADFFEDENGQRWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLV 607

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O60135|LCF1_SCHPO Long-chain-fatty-acid--CoA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lcf1 PE=3 SV=1

 Score =  313 bits (803), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 195/555 (35%), Positives = 297/555 (53%), Gaps = 40/555 (7%)

Query: 66  RNAQIPE-LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVT-----ASDGRK 119
           RNA  P+ LVE       T+  +F  S K     + +G R L+ +   T       DG K
Sbjct: 20  RNANFPDHLVETYSDDVHTLFDVFRHSVKQFGNKKAMGYRNLVKEHVETKMVTKVVDGEK 79

Query: 120 FE------KLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQ 173
            E         L DY + ++ +++D+A  +A  L   G N   +  + A T   W +  +
Sbjct: 80  KEVPKSWSYFELSDYNYLSFNDIYDKALRYAGALRKLGLNKGDKFELYAPTSAFWLLTAE 139

Query: 174 GCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE 233
            C  QS+T+VT Y +LGE+ L+HSL E+ V  +  +   LK L      +++++ +IY  
Sbjct: 140 ACLSQSMTIVTAYDTLGEEGLLHSLRESGVRGMYTEGHLLKTLVNPLKEIESLEVIIY-R 198

Query: 234 NDGSEKDSGVSGGIS-NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKG 292
           ND  E+D      I  N  +  F++ EK+          PS   +  IMYTSGSTGLPKG
Sbjct: 199 NDAKEEDIKTIQEIRPNLKLIKFADFEKMSPPVEP--DPPSPEEICCIMYTSGSTGLPKG 256

Query: 293 VMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352
           V+++H N+VA   AI   +P     D  LAYLPLAH+LE A E+I L  G  IGY +  T
Sbjct: 257 VILSHKNMVAIVTAIVKHVPEVTSKDYLLAYLPLAHILEFAFENICLAWGGTIGYANVRT 316

Query: 353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRR 412
           + DT+    +  KGD++  +PT+M  VPA+++ VR+G++ K+     + +++F   Y  +
Sbjct: 317 LVDTNC---RNCKGDINTFRPTIMVGVPAVWEMVRKGIMSKLNAASAVKRSVFWTAYYTK 373

Query: 413 LAAVEGSWFGAWGLERMLWDAIVFKSVRAV-LGGRIRFMICGGAPLSADSQRFINICMGA 471
              +  +  G+  L     D  VF  +R++  GGR+R+ + GG+ LS D++RF++I +  
Sbjct: 374 AKLMRHNLPGSCVL-----DTAVFNKIRSMGTGGRLRYTLSGGSALSPDTKRFLSIVL-C 427

Query: 472 PIGQAYGLTETCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526
           P+   YGLTE  A +          DD +    G  +PC  +KLV  +EG Y +   P P
Sbjct: 428 PMLIGYGLTEISAAAMVQNPACFNLDDSA----GSLLPCTEMKLVDCEEGNYNSHGHP-P 482

Query: 527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
           RGEI + G ++T GY N   +  E +  D     WF TGD+G++ P+G L IIDRKK++V
Sbjct: 483 RGEIWLRGPSLTRGYLNRDKENKESFTPD----GWFRTGDVGELTPEGLLRIIDRKKNLV 538

Query: 587 KLQHGEYISLGKIPS 601
           K Q+GEYI+L K+ S
Sbjct: 539 KTQNGEYIALEKLES 553

Esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids. It may supplement intracellular myristoyl-CoA pools from exogenous myristate. Preferentially acts on C12:0-C16:0 fatty acids with myristic and pentadecanic acid (C15:0) having the highest activities (By similarity). Appears to play a role in the maintenance of cell viability during stationary phase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	649
255582880	730	long-chain-fatty-acid CoA ligase, putati	0.902	0.802	0.770	0.0
193290712	726	putative long-chain acyl-CoA synthetase	0.896	0.801	0.740	0.0
224131896	679	predicted protein [Populus trichocarpa]	0.862	0.824	0.769	0.0
356577566	725	PREDICTED: long chain acyl-CoA synthetas	0.912	0.816	0.727	0.0
225447498	719	PREDICTED: long chain acyl-CoA synthetas	0.870	0.785	0.747	0.0
356547579	725	PREDICTED: long chain acyl-CoA synthetas	0.907	0.812	0.729	0.0
449453754	732	PREDICTED: long chain acyl-CoA synthetas	0.901	0.799	0.719	0.0
449511787	732	PREDICTED: long chain acyl-CoA synthetas	0.901	0.799	0.719	0.0
357462487	727	Annotation was added to scaffolds in Nov	0.901	0.804	0.721	0.0
317373793	711	long-chain acyl-CoA synthetase 2 [Helian	0.887	0.810	0.715	0.0

>gi|255582880|ref|XP_002532212.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223528108|gb|EEF30181.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis]

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/593 (77%), Positives = 521/593 (87%), Gaps = 7/593 (1%)

Query: 12  ELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQ-RGVPVEVGGEPGYAIRNAQI 70
           +L  EKG G YGI+GAAIVA+ +PVLLS++   +KKVK+ RGVPVEVGGE GYAIRNA+ 
Sbjct: 22  QLSVEKGYGTYGILGAAIVAIFLPVLLSIVFLGRKKVKKVRGVPVEVGGEAGYAIRNART 81

Query: 71  PELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDG--RKFEKLHLGDY 128
           P L+EVPW+GA+TMAALFEQSCK H Q RFLG RKL+ ++F+TASDG  RKFEKLHLGDY
Sbjct: 82  PGLIEVPWEGATTMAALFEQSCKKHSQYRFLGTRKLVSREFITASDGSGRKFEKLHLGDY 141

Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
           EWQTYG+VFDRAC+FASGL+   HN D RAAI +ET  EW IA QGC RQ+I+VVTIYSS
Sbjct: 142 EWQTYGQVFDRACNFASGLIRLEHNEDARAAIFSETREEWLIALQGCMRQNISVVTIYSS 201

Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
           LG+DAL+HSLNET+V TLICDSKQLKKL+A+SS L TIKNVIYFE++GS     +   +S
Sbjct: 202 LGDDALVHSLNETEVQTLICDSKQLKKLAAISSRLTTIKNVIYFEDEGS----AMPQSMS 257

Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
           NWTVSSF EVEK+GK +P+ PSLPS++G+AVIMYTSGSTGLPKGVMITHGNI+AT AA+ 
Sbjct: 258 NWTVSSFPEVEKMGKTNPLLPSLPSKDGIAVIMYTSGSTGLPKGVMITHGNIIATIAAVM 317

Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
           T IP  G +DVYLAYLPLAHVLELAAES+ML AGCAIGYGS LT+TDT++KIKKGTKGD 
Sbjct: 318 TTIPKLGTNDVYLAYLPLAHVLELAAESVMLTAGCAIGYGSALTLTDTANKIKKGTKGDA 377

Query: 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
           S+LKPTLMAAVP I DRVREGV KKV+EKGGL K LF+IGYKRR AA+EGSWFGAWGLER
Sbjct: 378 SMLKPTLMAAVPTILDRVREGVQKKVDEKGGLAKKLFDIGYKRRQAAIEGSWFGAWGLER 437

Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
           +LWDAIVF+++RA LGG IRFM+CGGAPLS DSQRFINICMGA IGQAYGLTETCAG+ F
Sbjct: 438 VLWDAIVFRTIRAGLGGHIRFMLCGGAPLSGDSQRFINICMGAIIGQAYGLTETCAGAAF 497

Query: 489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
           S+WDD SVGRVGPPVPCCYIKLVSW+EGGY+ SDKPMPRGEIVVGGF+VT+GYF +  KT
Sbjct: 498 SDWDDTSVGRVGPPVPCCYIKLVSWEEGGYRISDKPMPRGEIVVGGFSVTSGYFKSHEKT 557

Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPS 601
           +EVYKVDERGM WFYTGDIGQ +PDGCLEIIDRKKDIVKLQHGEYISLGK+ +
Sbjct: 558 NEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEA 610

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|193290712|gb|ACF17664.1| putative long-chain acyl-CoA synthetase [Capsicum annuum]

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/585 (74%), Positives = 506/585 (86%), Gaps = 3/585 (0%)

Query: 17  KGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEV 76
           K  G  G+ GA  +A+++P++LSM++  KKK KQRGVPV+VGGE G A+RN +   LVEV
Sbjct: 25  KNYGSSGVTGAVFIAIIMPIILSMLLMGKKKAKQRGVPVQVGGEAGLAMRNVKSARLVEV 84

Query: 77  PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
           PW+GA+T+ ALFEQSCK H  DR LG RKL+ +DFVTASDGRKFEKLHLG+Y+W++YG+V
Sbjct: 85  PWEGATTVPALFEQSCKKHSSDRCLGTRKLVSRDFVTASDGRKFEKLHLGEYQWESYGQV 144

Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
           FDR C+FASGL+ FGH+VDT AAI AET  EW IAFQGCFRQ+ITVVTIY+SLG+DALIH
Sbjct: 145 FDRTCNFASGLIKFGHDVDTHAAICAETRPEWIIAFQGCFRQNITVVTIYASLGDDALIH 204

Query: 197 SLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFS 256
           SLNETQV+TLICD+KQLKK+++VSSSLKTIKNVIYFE+D +  DS     I +W +SSFS
Sbjct: 205 SLNETQVSTLICDAKQLKKVASVSSSLKTIKNVIYFEDDETAIDST---NIDSWRMSSFS 261

Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
            VEKLGK SP+ P LP +  +AVIMYTSGSTGLPKGVMITHGNIVAT+AA+ T+IPN G 
Sbjct: 262 AVEKLGKNSPIQPRLPIKEDIAVIMYTSGSTGLPKGVMITHGNIVATSAAVMTVIPNLGS 321

Query: 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLM 376
           SDVYLAYLPLAHV ELAAE++ML AG  IGYGS LT+TDTS+K+ KGTKGD +VLKPTLM
Sbjct: 322 SDVYLAYLPLAHVFELAAETVMLTAGACIGYGSALTLTDTSNKVMKGTKGDATVLKPTLM 381

Query: 377 AAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVF 436
           AAVPAI DRVR+GV+KKVEEK G  K LF+IG+ RRLAA+EGSWFGAWGLE+ LWD I+F
Sbjct: 382 AAVPAILDRVRDGVMKKVEEKAGSAKKLFHIGFNRRLAAMEGSWFGAWGLEKQLWDIIIF 441

Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV 496
           K VRAVLGG IRFM+CGGAPLS D+QRFINICMGAPIGQ YGLTET AG+TFSEWDDPSV
Sbjct: 442 KKVRAVLGGDIRFMLCGGAPLSGDTQRFINICMGAPIGQGYGLTETFAGATFSEWDDPSV 501

Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556
           GRVGPP+PC YIKLV+W+EGGY+  DKPMPRGE+VVGG ++TAGYFNN  KT+EVYKVDE
Sbjct: 502 GRVGPPLPCSYIKLVTWEEGGYRIVDKPMPRGEVVVGGCSITAGYFNNEDKTNEVYKVDE 561

Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPS 601
           RGM WFYTGDIG+ +PDGC+EIIDRKKDI+KLQHGEYISLGK+ +
Sbjct: 562 RGMRWFYTGDIGRFHPDGCIEIIDRKKDIIKLQHGEYISLGKVEA 606

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131896|ref|XP_002321205.1| predicted protein [Populus trichocarpa] gi|222861978|gb|EEE99520.1| predicted protein [Populus trichocarpa]

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/560 (76%), Positives = 487/560 (86%)

Query: 45  KKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKR 104
           KKKVKQRGVPVEVGGE GYA+RNA+  ELVEVPWKGA+TMAALFEQSC+ H  +RFLG R
Sbjct: 3   KKKVKQRGVPVEVGGEAGYAVRNARHAELVEVPWKGATTMAALFEQSCRKHSPERFLGTR 62

Query: 105 KLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET 164
           KL+ K+FVTASDGRKFEKLHLGDYEWQTYG+VFDR C+FASGL+  GHN D RAAI A+T
Sbjct: 63  KLISKEFVTASDGRKFEKLHLGDYEWQTYGQVFDRVCNFASGLIMLGHNEDARAAIFADT 122

Query: 165 CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK 224
             EW IAFQGCFRQ+ITVVT+Y+SLG DALIHSLNETQV+TLICD KQLK L+A+SS + 
Sbjct: 123 RAEWLIAFQGCFRQNITVVTMYASLGVDALIHSLNETQVSTLICDPKQLKTLAAISSKIT 182

Query: 225 TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTS 284
           TIKNVIYFE+  +  D G+S   S W VSSFSEVE+LGK S V PSLP++NG+AV+MYTS
Sbjct: 183 TIKNVIYFEDGETTNDLGLSASTSYWKVSSFSEVEELGKNSHVPPSLPTKNGIAVVMYTS 242

Query: 285 GSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCA 344
           GSTG PKGVMITHGNIVATAAA+ T+IP    +DVYLAYLPLAHV ELAAES+ML  GCA
Sbjct: 243 GSTGQPKGVMITHGNIVATAAAVMTVIPKLSSNDVYLAYLPLAHVFELAAESVMLSVGCA 302

Query: 345 IGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404
           IGYGS LT+TDTS+KIKKGTKGD S+L PTLM AVPAI DRVR+GV+KKVEEKGGL K L
Sbjct: 303 IGYGSALTLTDTSNKIKKGTKGDASMLNPTLMLAVPAILDRVRDGVLKKVEEKGGLAKKL 362

Query: 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464
           FNIG KRR+AA+EGSWFG   LERMLWD I FK +RA+LG R++F++CGGAPLS DSQRF
Sbjct: 363 FNIGCKRRMAAIEGSWFGTSALERMLWDVIAFKQIRAILGVRMQFILCGGAPLSGDSQRF 422

Query: 465 INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP 524
            NICMGA IGQAYGLTETCAG+ ++EWDDPSVGRVGPP+PCCY+KLVSW+EGGY  +DKP
Sbjct: 423 TNICMGAIIGQAYGLTETCAGAAYTEWDDPSVGRVGPPLPCCYVKLVSWEEGGYTVADKP 482

Query: 525 MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKD 584
           MPRGE+VVGGF+VTAGYFN   KT+EVYKVDERGM WFYTGDIGQ +PDGCLEIIDRKKD
Sbjct: 483 MPRGEVVVGGFSVTAGYFNYQEKTNEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKD 542

Query: 585 IVKLQHGEYISLGKIPSTTT 604
           IVKLQHGEYISLGK+ +  T
Sbjct: 543 IVKLQHGEYISLGKVEAALT 562

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577566|ref|XP_003556895.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Glycine max]

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/594 (72%), Positives = 504/594 (84%), Gaps = 2/594 (0%)

Query: 11  SELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQI 70
           S++   K  G YG + A ++++L+PVL S +   KKK K RGVPVEVGGE  +A+RNA+ 
Sbjct: 17  SDIFGWKDHGEYGALAAIVISILVPVLFSALFFGKKKGKIRGVPVEVGGEECFAVRNARK 76

Query: 71  PELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEW 130
            ELVEVPWKGA TMA LFEQSC  +  +RFLG RKL+ K+ VT+SDGRKFEKLHLGDYEW
Sbjct: 77  TELVEVPWKGAPTMAHLFEQSCNKYTCNRFLGTRKLIQKELVTSSDGRKFEKLHLGDYEW 136

Query: 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
           +TYGEVF R  +FASGL+  GHN D+R AI ++T  EW IA QGCFRQ++TVVTIY+SLG
Sbjct: 137 ETYGEVFARVSNFASGLLKLGHNEDSRVAIFSDTRAEWLIALQGCFRQNVTVVTIYASLG 196

Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
           EDALIHSLNET+V+TLICDSKQLKKL A+ S L +++N+IYFE+D  E     SG  S W
Sbjct: 197 EDALIHSLNETEVSTLICDSKQLKKLDAIRSRLISLQNIIYFEDDNEE--DAFSGSSSGW 254

Query: 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
           T++SFSEVEKLGK SPV+PSLPS+N +AVIMYTSGSTGLPKGVMITHGNIVAT AA+ T+
Sbjct: 255 TIASFSEVEKLGKESPVEPSLPSKNAIAVIMYTSGSTGLPKGVMITHGNIVATTAAVMTV 314

Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
           IPN G  DVYLAYLPLAHV E+AAES+ML AGCAIGYGS LT+TDTS+K+KKGTKGD +V
Sbjct: 315 IPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGCAIGYGSPLTLTDTSNKVKKGTKGDATV 374

Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
           LKPTL+ AVPAI DR+R+GVVKKVE+KGGL KNLF+  YKRRLAAV+GSW GAWGLE+++
Sbjct: 375 LKPTLLTAVPAILDRIRDGVVKKVEQKGGLVKNLFHFAYKRRLAAVKGSWLGAWGLEKLM 434

Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSE 490
           WD IVFK +R+ LGG++RFM+CGGAPLS DSQ FINICMGAPIGQ YGLTET AG+ FSE
Sbjct: 435 WDTIVFKQIRSALGGQLRFMLCGGAPLSGDSQHFINICMGAPIGQGYGLTETFAGAAFSE 494

Query: 491 WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
           WDD SVGRVGPP+PCCYIKLVSW+EGGY TSDKPMPRGEIVVGGF+VTAGYF N  KT+E
Sbjct: 495 WDDYSVGRVGPPLPCCYIKLVSWEEGGYLTSDKPMPRGEIVVGGFSVTAGYFKNQEKTNE 554

Query: 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTT 604
           V+KVDE+GM WFYTGDIGQ +PDGCLEIIDRKKDIVKLQHGEYISLGK+ +  +
Sbjct: 555 VFKVDEKGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALS 608

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447498|ref|XP_002267417.1| PREDICTED: long chain acyl-CoA synthetase 8 [Vitis vinifera] gi|296085053|emb|CBI28468.3| unnamed protein product [Vitis vinifera]

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/567 (74%), Positives = 499/567 (88%), Gaps = 2/567 (0%)

Query: 35  PVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKS 94
           P+L S+++  KKKVKQRGVPVEVG E G+A+RN++  ELVEVPW+GA+T+AALFEQSC  
Sbjct: 32  PLLFSIILVGKKKVKQRGVPVEVGDELGFAMRNSRYTELVEVPWEGATTIAALFEQSCGK 91

Query: 95  HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNV 154
           H +D FLG RKL+ ++F+TA DGRKFEK+HLG+Y+W+TY E+F+RAC+FASGL+  GHNV
Sbjct: 92  HSRDPFLGTRKLINREFITAGDGRKFEKVHLGEYQWETYEEIFNRACNFASGLIKLGHNV 151

Query: 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK 214
           D+  AI ++T  EW IAFQGCFRQ+IT+VTIY+SLGEDALIHSLNETQ++TLICDSKQLK
Sbjct: 152 DSHVAIFSDTQAEWLIAFQGCFRQNITIVTIYASLGEDALIHSLNETQISTLICDSKQLK 211

Query: 215 KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQ 274
           KL+++SS L+ IKNVIYF+N  S  DS  SG +SNWTVS+FSEVEKLGK +PV P LPS+
Sbjct: 212 KLASISSRLEMIKNVIYFDNAAS--DSDFSGDMSNWTVSTFSEVEKLGKENPVHPRLPSK 269

Query: 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA 334
             +AV+MYTSGSTGLPKGVM+THGNIVATAAA+ T+IP  G  D+YLAYLPLAHV ELAA
Sbjct: 270 TDIAVVMYTSGSTGLPKGVMMTHGNIVATAAAVMTVIPELGSKDIYLAYLPLAHVFELAA 329

Query: 335 ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394
           E++M+ AGCAIGYGS LT+TDTS+KI+KGTKGD S+LKPTLMA VPAI DRVR+GV+K+V
Sbjct: 330 ETVMMAAGCAIGYGSALTLTDTSNKIQKGTKGDASMLKPTLMATVPAILDRVRDGVLKQV 389

Query: 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454
           E KGGL K LFNIGYKRRLAAVEGS FGAWGLER+ WDAIVFK +R++LGG IRFM+CGG
Sbjct: 390 EAKGGLVKKLFNIGYKRRLAAVEGSCFGAWGLERVFWDAIVFKKIRSLLGGHIRFMLCGG 449

Query: 455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWD 514
           APLS D+QRFINICMGAPIGQ YGLTETCAG+TF+E DDP+VG VGPP+PC YIKLVSW+
Sbjct: 450 APLSGDTQRFINICMGAPIGQGYGLTETCAGATFTEPDDPNVGHVGPPLPCAYIKLVSWE 509

Query: 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
           EGGYKTSDKPMPRGE+VVGG+++TAGYFNN  KT E YKVDERGM WFYTGDIGQ  P+G
Sbjct: 510 EGGYKTSDKPMPRGEVVVGGYSITAGYFNNEEKTKEAYKVDERGMRWFYTGDIGQFQPNG 569

Query: 575 CLEIIDRKKDIVKLQHGEYISLGKIPS 601
           CLEIIDRKKDIVKLQHGEYISLGK+ +
Sbjct: 570 CLEIIDRKKDIVKLQHGEYISLGKVEA 596

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547579|ref|XP_003542188.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Glycine max]

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/591 (72%), Positives = 502/591 (84%), Gaps = 2/591 (0%)

Query: 11  SELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQI 70
           S++   KG G YG + A ++++L+PVL S +   KKK K RGVPVEVGGE  +A+RNA+ 
Sbjct: 17  SDIFGWKGHGEYGALAAIVISILVPVLFSALFFGKKKGKIRGVPVEVGGEECFAVRNARK 76

Query: 71  PELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEW 130
            ELVEVPWKGA TMA LFEQSC  + +++FLG RK++ K+FVT+SDGRKFEKLHLGDYEW
Sbjct: 77  TELVEVPWKGAPTMAHLFEQSCNKYTRNQFLGTRKIIQKEFVTSSDGRKFEKLHLGDYEW 136

Query: 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
           +TYGEVF R  +FASGL+  GHN D+R AI ++T  EW IA QGCFRQ++TVVTIY+SLG
Sbjct: 137 ETYGEVFARVSNFASGLLKLGHNGDSRVAIFSDTRAEWLIALQGCFRQNVTVVTIYASLG 196

Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
           EDALIHSLNET+V+TLICDSKQ KKL A+ S L +++NVIYFE+D  E     SG  S W
Sbjct: 197 EDALIHSLNETEVSTLICDSKQSKKLDAIRSRLTSLQNVIYFEDDNEE--DAFSGSSSGW 254

Query: 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
           T++SFSEVEKLGK SPV+PSLPS+N +AVIMYTSGSTGLPKGVMITHGNIVAT AA+ T+
Sbjct: 255 TIASFSEVEKLGKESPVEPSLPSKNAIAVIMYTSGSTGLPKGVMITHGNIVATTAAVMTV 314

Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
           IPN G  DVYLAYLPLAHV E+AAES+ML AGCAIGYGS LT+TDTS+K+KKGTKGD +V
Sbjct: 315 IPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGCAIGYGSPLTLTDTSNKVKKGTKGDATV 374

Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
           LKPTL+ AVPAI DR+R+GVVKKVE+KGGL KNLF+  YKRRL AV+GSW GAWGLE+++
Sbjct: 375 LKPTLLTAVPAILDRIRDGVVKKVEQKGGLVKNLFHFAYKRRLGAVKGSWLGAWGLEKLM 434

Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSE 490
           WD IVFK +R  LGG++RFM+CGGAPLS DSQ FINICMGAPIGQ YGLTET AG+ FSE
Sbjct: 435 WDTIVFKQIRTALGGQLRFMLCGGAPLSGDSQHFINICMGAPIGQGYGLTETFAGAAFSE 494

Query: 491 WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
           WDD SVGRVGPP+PCC+IKLVSW+EGGY TSDKPMPRGEIVVGGF+VTAGYF N  KT E
Sbjct: 495 WDDYSVGRVGPPLPCCHIKLVSWEEGGYLTSDKPMPRGEIVVGGFSVTAGYFKNQEKTKE 554

Query: 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPS 601
           V+KVDE+GM WFYTGDIGQ +PDGCLEIIDRKKDIVKLQHGEYISLGKI +
Sbjct: 555 VFKVDEKGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKIEA 605

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453754|ref|XP_004144621.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Cucumis sativus]

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/585 (71%), Positives = 501/585 (85%)

Query: 14  LTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPEL 73
           L  +G GI GIVG   + +LI +LL  +V  KK+ K+RG+PVEVGG+PGYA+RN ++ EL
Sbjct: 25  LVGRGYGIVGIVGTIFIGILIAILLRSVVLVKKRRKRRGIPVEVGGDPGYAMRNVRVTEL 84

Query: 74  VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTY 133
            +VPWKGA+TMAALFEQSC+ H Q++FLG RKL+ K+FVTASDGRKFEKL+LG+YEWQTY
Sbjct: 85  SQVPWKGATTMAALFEQSCRKHAQNKFLGTRKLISKEFVTASDGRKFEKLNLGEYEWQTY 144

Query: 134 GEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDA 193
           GEVF+RAC+FASGLV  GH+VD+R AI AETC EWFIAFQGC RQ ITVVTIY+SLGE+A
Sbjct: 145 GEVFERACNFASGLVGIGHDVDSRVAIYAETCAEWFIAFQGCIRQDITVVTIYASLGEEA 204

Query: 194 LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVS 253
           L+HSLNET+V+TLIC+SKQL+KL  +SSSL T++N+IYFE+ G E D   S   S W V 
Sbjct: 205 LVHSLNETEVSTLICNSKQLRKLMEISSSLTTVENIIYFEDVGYEADFISSENTSKWKVI 264

Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
           SFSEV KLG  +PV PSLPS + +AV+MYTSGSTGLPKGVMI+HGNIVATAA + T+IP 
Sbjct: 265 SFSEVIKLGTENPVVPSLPSSHSIAVVMYTSGSTGLPKGVMISHGNIVATAAGVMTVIPK 324

Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
               DVYLAYLPLAHVLELAAE++++ AG A+GYGS LTMTDTSSKIKKGTKGDVSVLKP
Sbjct: 325 LDSDDVYLAYLPLAHVLELAAEAVIVSAGSAMGYGSPLTMTDTSSKIKKGTKGDVSVLKP 384

Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
           T+M AVPAI DR+R+GV+KKVEEKGGL K LF+I Y R LAA+EGSW GAWGLER+ W+ 
Sbjct: 385 TIMTAVPAILDRIRDGVLKKVEEKGGLVKKLFHIAYNRELAALEGSWLGAWGLERLFWNV 444

Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
           ++F+++R+VLGGR+RFM+CGGAPLS +SQRF NICMG+ IGQ YGLTET AG+ FSEWDD
Sbjct: 445 LIFRNIRSVLGGRLRFMLCGGAPLSEESQRFFNICMGSTIGQGYGLTETFAGAAFSEWDD 504

Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
            SVGRVGPP+PCC+IKLVSW+EGGY+T+DKPMPRGEIV+GG +VT GYF +P KT+EVYK
Sbjct: 505 TSVGRVGPPLPCCFIKLVSWEEGGYRTTDKPMPRGEIVIGGTSVTVGYFKDPEKTNEVYK 564

Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGK 598
            DE+G+ WFYTGDIG  +PDGCLEIIDRKKDIVKLQHGEYISLGK
Sbjct: 565 DDEKGIRWFYTGDIGAFHPDGCLEIIDRKKDIVKLQHGEYISLGK 609

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511787|ref|XP_004164053.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Cucumis sativus]

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/585 (71%), Positives = 501/585 (85%)

Query: 14  LTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPEL 73
           L  +G GI GIVG   + +LI +LL  +V  KK+ K+RG+PVEVGG+PGYA+RN ++ EL
Sbjct: 25  LVGRGYGIVGIVGTIFIGILIAILLRSVVLVKKRRKRRGIPVEVGGDPGYAMRNVRVTEL 84

Query: 74  VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTY 133
            +VPWKGA+TMAALFEQSC+ H Q++FLG RKL+ K+FVTASDGRKFEKL+LG+YEWQTY
Sbjct: 85  SQVPWKGATTMAALFEQSCRKHAQNKFLGTRKLISKEFVTASDGRKFEKLNLGEYEWQTY 144

Query: 134 GEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDA 193
           GEVF+RAC+FASGLV  GH+VD+R AI AETC EWFIAFQGC RQ ITVVTIY+SLGE+A
Sbjct: 145 GEVFERACNFASGLVGIGHDVDSRVAIYAETCAEWFIAFQGCIRQDITVVTIYASLGEEA 204

Query: 194 LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVS 253
           L+HSLNET+V+TLIC+SKQL+KL  +SSSL T++N+IYFE+ G E D   S   S W V 
Sbjct: 205 LVHSLNETEVSTLICNSKQLRKLMEISSSLTTVENIIYFEDVGYEADFISSENTSKWKVI 264

Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
           SFSEV KLG  +PV PSLPS + +AV+MYTSGSTGLPKGVMI+HGNIVATAA + T+IP 
Sbjct: 265 SFSEVIKLGTENPVVPSLPSSHSIAVVMYTSGSTGLPKGVMISHGNIVATAAGVMTVIPK 324

Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
               DVYLAYLPLAHVLELAAE++++ AG A+GYGS LTMTDTSSKIKKGTKGDVSVLKP
Sbjct: 325 LDSDDVYLAYLPLAHVLELAAEAVIVSAGSAMGYGSPLTMTDTSSKIKKGTKGDVSVLKP 384

Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
           T+M AVPAI DR+R+GV+KKVEEKGGL K LF+I Y R LAA+EGSW GAWGLER+ W+ 
Sbjct: 385 TIMTAVPAILDRIRDGVLKKVEEKGGLVKKLFHIAYNRELAALEGSWLGAWGLERLFWNV 444

Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
           ++F+++R+VLGGR+RFM+CGGAPLS +SQRF NICMG+ IGQ YGLTET AG+ FSEWDD
Sbjct: 445 LIFRNIRSVLGGRLRFMLCGGAPLSEESQRFFNICMGSTIGQGYGLTETFAGAAFSEWDD 504

Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
            SVGRVGPP+PCC+IKLVSW+EGGY+T+DKPMPRGEIV+GG +VT GYF +P KT+EVYK
Sbjct: 505 TSVGRVGPPLPCCFIKLVSWEEGGYRTTDKPMPRGEIVIGGTSVTVGYFKDPEKTNEVYK 564

Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGK 598
            DE+G+ WFYTGDIG  +PDGCLEIIDRKKDIVKLQHGEYISLGK
Sbjct: 565 DDEKGIRWFYTGDIGAFHPDGCLEIIDRKKDIVKLQHGEYISLGK 609

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462487|ref|XP_003601525.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|357469953|ref|XP_003605261.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355490573|gb|AES71776.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355506316|gb|AES87458.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula]

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/585 (72%), Positives = 496/585 (84%)

Query: 17  KGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEV 76
           K  G  G V A ++ +++PVL S+    KKK K RGVPVEV GE GYA+RNA+  ELVEV
Sbjct: 23  KDHGELGTVFAIVIGIIVPVLFSVFFLGKKKGKVRGVPVEVSGESGYAVRNARYSELVEV 82

Query: 77  PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
           PWKGA TMA LFEQSCK H  +RFLG RKL+GK+FVT+SDGRKFEK+HLG+YEW+TYGEV
Sbjct: 83  PWKGAPTMAHLFEQSCKKHTHNRFLGTRKLIGKEFVTSSDGRKFEKVHLGEYEWETYGEV 142

Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
           F R  +FASGL+  GH++D+  AI ++T  EWFIA QGCFRQ+ITVVTIY+SLGEDALIH
Sbjct: 143 FARVSNFASGLLKLGHDIDSHVAIFSDTRAEWFIALQGCFRQNITVVTIYASLGEDALIH 202

Query: 197 SLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFS 256
           SLNETQV+TLICD K L KL A+ S L +++N+IYFE+D  E+ +   G  SN  ++SF 
Sbjct: 203 SLNETQVSTLICDVKLLNKLDAIRSKLTSLQNIIYFEDDSKEEHTFSEGLSSNCKIASFD 262

Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
           EVEKLGK SPV+PSLPS+N VAV+MYTSGSTGLPKGVMITHGNIVAT AA+ T+IPN G 
Sbjct: 263 EVEKLGKESPVEPSLPSKNAVAVVMYTSGSTGLPKGVMITHGNIVATTAAVMTVIPNLGS 322

Query: 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLM 376
            DVYLAYLPLAHV E+AAES+ML AG AIGYGS +T+TDTS+K+KKGTKGDV+VLKPTL+
Sbjct: 323 KDVYLAYLPLAHVFEMAAESVMLAAGVAIGYGSPMTLTDTSNKVKKGTKGDVTVLKPTLL 382

Query: 377 AAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVF 436
            AVPAI DR+R+GVVKKVEEKGGL KNLF I YKRRLAAV+GSW GAWG+E+++WD I+F
Sbjct: 383 TAVPAIIDRIRDGVVKKVEEKGGLAKNLFQIAYKRRLAAVKGSWLGAWGVEKLVWDTIIF 442

Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV 496
           K +R VLGG +RFM+CGGAPLS DSQ+FINIC+GAPIGQ YGLTET AG+ FSE DD SV
Sbjct: 443 KKIRTVLGGNLRFMLCGGAPLSGDSQQFINICVGAPIGQGYGLTETFAGAAFSEADDYSV 502

Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556
           GRVGPP+PCCYIKLVSW+EGGY +SDKPMPRGE+VVGGF+VTAGYF N  KT EV+KVDE
Sbjct: 503 GRVGPPLPCCYIKLVSWEEGGYLSSDKPMPRGEVVVGGFSVTAGYFKNQDKTDEVFKVDE 562

Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPS 601
           +G+ WFYTGDIG+ +PDGCLEIIDRKKDIVKLQHGEYISLGK+ +
Sbjct: 563 KGVRWFYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEA 607

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317373793|gb|ADV16379.1| long-chain acyl-CoA synthetase 2 [Helianthus annuus]

 Score =  893 bits (2307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/580 (71%), Positives = 498/580 (85%), Gaps = 4/580 (0%)

Query: 22  YGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGA 81
           YG   A + A+ +P++LS M   KKKVKQRGVPVEVGGEPG+ +RN +  +LV+VPW+GA
Sbjct: 16  YGAAIAVLFAVAVPLVLSSMFVGKKKVKQRGVPVEVGGEPGFGMRNVRSKKLVDVPWEGA 75

Query: 82  STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRAC 141
           +TMAALFEQSCK H Q RFLG RKL+ + F+  S GRKFEKLHLG+YEW+T+G+VF+R C
Sbjct: 76  TTMAALFEQSCKKHSQHRFLGTRKLIERSFIDGSGGRKFEKLHLGEYEWETFGQVFERVC 135

Query: 142 SFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNET 201
           +FASGL+  GH+ DTR AI ++T  EW IAF+GCFRQ+ITVVTIY+SLG+DALIHSLNET
Sbjct: 136 NFASGLIQLGHDPDTRIAIFSDTRAEWLIAFEGCFRQNITVVTIYASLGDDALIHSLNET 195

Query: 202 QVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKL 261
           +V+TLICDSK LKK+++VSSSL+T+ NVIYFE+D +E  S     I +W +SSFSEVEK+
Sbjct: 196 KVSTLICDSKLLKKVASVSSSLETVTNVIYFESDNTEALSK----IGDWQISSFSEVEKM 251

Query: 262 GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321
           G+ SPV   LP +  +AVIMYTSGSTGLPKGVM+THGN+VATAAA+ T+IP  G SDVY+
Sbjct: 252 GRNSPVKARLPIKKDIAVIMYTSGSTGLPKGVMMTHGNVVATAAAVMTVIPGIGTSDVYM 311

Query: 322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPA 381
           AYLPLAH+ ELAAE++M+ AG +IGYGS LT+TDTS+KIKKGT GD + LKPTLMA+VPA
Sbjct: 312 AYLPLAHIFELAAETVMITAGSSIGYGSALTLTDTSNKIKKGTMGDATALKPTLMASVPA 371

Query: 382 IFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441
           I DRVR+GVVKKVEEKGGLT  LFNI Y+RRL AV+GSW GAWGLE++LWDAIVFK +++
Sbjct: 372 ILDRVRDGVVKKVEEKGGLTTKLFNIAYQRRLLAVDGSWLGAWGLEKLLWDAIVFKKIQS 431

Query: 442 VLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP 501
           VLGG++RFM+CGGAPL+AD+QRFIN+C+GAPIGQ YGLTETCAG+ FSE DD SVGRVGP
Sbjct: 432 VLGGKMRFMLCGGAPLAADTQRFINVCIGAPIGQGYGLTETCAGAAFSEADDNSVGRVGP 491

Query: 502 PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
           P+PC YIKLVSWDEGGY TSDKPMPRGE+VVGG++VTAGYFNN  KT EV+KVDE GM W
Sbjct: 492 PLPCVYIKLVSWDEGGYLTSDKPMPRGEVVVGGYSVTAGYFNNEEKTKEVFKVDESGMRW 551

Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPS 601
           FYTGDIG+ +PDGCLEIIDRKKDIVKLQHGEYISLGK+ +
Sbjct: 552 FYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEA 591

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	649
TAIR|locus:2058384	720	LACS8 "AT2G04350" [Arabidopsis	0.898	0.809	0.654	1.6e-212
TAIR|locus:2204765	691	LACS9 "AT1G77590" [Arabidopsis	0.867	0.814	0.601	2.3e-190
UNIPROTKB|F1MBW3	722	ACSL4 "Uncharacterized protein	0.808	0.727	0.454	9.2e-123
UNIPROTKB|O60488	711	ACSL4 "Long-chain-fatty-acid--	0.808	0.738	0.449	8.3e-122
UNIPROTKB|Q2QC87	670	ACSL4 "Uncharacterized protein	0.808	0.783	0.451	1.7e-121
UNIPROTKB|F1PEH9	670	ACSL4 "Uncharacterized protein	0.808	0.783	0.447	3.6e-121
RGD|69401	670	Acsl4 "acyl-CoA synthetase lon	0.808	0.783	0.451	3.6e-121
MGI|MGI:1354713	711	Acsl4 "acyl-CoA synthetase lon	0.808	0.738	0.451	4.1e-120
UNIPROTKB|O95573	720	ACSL3 "Long-chain-fatty-acid--	0.810	0.730	0.457	5.2e-120
RGD|70552	720	Acsl3 "acyl-CoA synthetase lon	0.810	0.730	0.453	1.8e-119

TAIR|locus:2058384 LACS8 "AT2G04350" [Arabidopsis thaliana (taxid:3702)]

 Score = 2054 (728.1 bits), Expect = 1.6e-212, P = 1.6e-212
 Identities = 383/585 (65%), Positives = 458/585 (78%)

Query:    17 KGS--GIYXXXXXXXXXXXXXXXXSMMVARKKKVKQRXXXXXXXXXXXYAIRNAQIPELV 74
             KGS  G+Y                S+++   KK K+R           Y +R+A+ PELV
Sbjct:    14 KGSDFGVYGIIGGGIVALLVPVLLSVVLNGTKKGKKRGVPIKVGGEEGYTMRHARAPELV 73

Query:    75 EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYG 134
             +VPW+GA+TM ALFEQSCK + +DR LG R+ + K+F+TASDGRKFEKLHLG+Y+WQ+YG
Sbjct:    74 DVPWEGAATMPALFEQSCKKYSKDRLLGTREFIDKEFITASDGRKFEKLHLGEYKWQSYG 133

Query:   135 EVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDAL 194
             EVF+R C+FASGLVN GHNVD R AI ++T  EWFIAFQGCFRQSITVVTIY+SLGE+AL
Sbjct:   134 EVFERVCNFASGLVNVGHNVDDRVAIFSDTRAEWFIAFQGCFRQSITVVTIYASLGEEAL 193

Query:   195 IHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWTVSS 254
             I+SLNET+V+TLICD               T+KN+IY E DG +  S     + + TVSS
Sbjct:   194 IYSLNETRVSTLICDSKQLKKLSAIQSSLKTVKNIIYIEEDGVDVASSDVNSMGDITVSS 253

Query:   255 FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
              SEVEKLG+++ V P LPS+NGVAVIM+TSGSTGLPKGVMITHGN+VATAA +  ++P  
Sbjct:   254 ISEVEKLGQKNAVQPILPSKNGVAVIMFTSGSTGLPKGVMITHGNLVATAAGVMKVVPKL 313

Query:   315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT 374
              ++D Y+AYLPLAHV EL AE ++  +G AIGYGS +T+TDTS+K+KKGTKGDVS LKPT
Sbjct:   314 DKNDTYIAYLPLAHVFELEAEIVVFTSGSAIGYGSAMTLTDTSNKVKKGTKGDVSALKPT 373

Query:   375 LMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI 434
             +M AVPAI DRVR            + K LF+  YKRRLAAV+GSWFGAWGLE+MLWDA+
Sbjct:   374 IMTAVPAILDRVREGVLKKVEEKGGMAKTLFDFAYKRRLAAVDGSWFGAWGLEKMLWDAL 433

Query:   435 VFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP 494
             VFK +RAVLGG IRFM+ GGAPLS DSQRFINICMG+PIGQ YGLTETCAG+TFSEWDDP
Sbjct:   434 VFKKIRAVLGGHIRFMLVGGAPLSPDSQRFINICMGSPIGQGYGLTETCAGATFSEWDDP 493

Query:   495 SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554
             +VGRVGPP+PC Y+KLVSW+EGGY+ SDKPMPRGEIVVGG +VTAGYFNN  KT EVYKV
Sbjct:   494 AVGRVGPPLPCGYVKLVSWEEGGYRISDKPMPRGEIVVGGNSVTAGYFNNQEKTDEVYKV 553

Query:   555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
             DE+G  WFYTGDIG+ +PDGCLE+IDRKKDIVKLQHGEY+SLGK+
Sbjct:   554 DEKGTRWFYTGDIGRFHPDGCLEVIDRKKDIVKLQHGEYVSLGKV 598

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2204765 LACS9 "AT1G77590" [Arabidopsis thaliana (taxid:3702)]

 Score = 1845 (654.5 bits), Expect = 2.3e-190, P = 2.3e-190
 Identities = 342/569 (60%), Positives = 425/569 (74%)

Query:    39 SMMVARKKKVKQRXXXXXXXXXXXYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQD 98
             + +V + KK K+R           YAIRN +  E V   W+  ST+  LFE SC +H   
Sbjct:    15 TFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTLPELFEISCNAHSDR 74

Query:    99 RFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158
              FLG RKL+ ++  T+ DG+ FEKLHLGDYEW T+G+  +  C FASGLV  GH  + R 
Sbjct:    75 VFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFASGLVQIGHKTEERV 134

Query:   159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDXXXXXXXXX 218
             AI A+T  EWFI+ QGCFR+++TVVTIYSSLGE+AL HSLNET+VTT+IC          
Sbjct:   135 AIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVTTVICGSKELKKLMD 194

Query:   219 XXXXXXTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVA 278
                   T+K VI  ++   E  S V+   SNW  +SF++V+KLG+ +PVDP+ P    VA
Sbjct:   195 ISQQLETVKRVICMDD---EFPSDVN---SNWMATSFTDVQKLGRENPVDPNFPLSADVA 248

Query:   279 VIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM 338
             VIMYTSGSTGLPKGVM+THGN++AT +A+ T++P+ G+ D+Y+AYLPLAH+LELAAES+M
Sbjct:   249 VIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLPLAHILELAAESVM 308

Query:   339 LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXX 398
                G AIGYGS LT+TDTS+KIKKGTKGDV+ LKPT+M AVPAI DRVR           
Sbjct:   309 ATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDRVRDGVRKKVDAKG 368

Query:   399 XLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLS 458
              L+K LF+  Y RRL+A+ GSWFGAWGLE++LWD +VF+ +RAVLGG+IR+++ GGAPLS
Sbjct:   369 GLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGGQIRYLLSGGAPLS 428

Query:   459 ADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGY 518
              D+QRFINIC+GAPIGQ YGLTETCAG TFSE++D SVGRVG P+PC ++KLV W EGGY
Sbjct:   429 GDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPCSFVKLVDWAEGGY 488

Query:   519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEI 578
              TSDKPMPRGEIV+GG N+T GYF N  KT EVYKVDE+GM WFYTGDIG+ +PDGCLEI
Sbjct:   489 LTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYTGDIGRFHPDGCLEI 548

Query:   579 IDRKKDIVKLQHGEYISLGKIPSTTTVLP 607
             IDRKKDIVKLQHGEY+SLGK+ +  ++ P
Sbjct:   549 IDRKKDIVKLQHGEYVSLGKVEAALSISP 577

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|F1MBW3 ACSL4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 246/541 (45%), Positives = 329/541 (60%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             ++++P  GA T+  LF+ +     +   LG R++L ++     +G+ F+KL LG+Y+W  
Sbjct:    81 VIDIP--GADTLDKLFDHAVSKFGKKESLGTREVLSEENEMQPNGKVFKKLILGNYKWLN 138

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y EV  R  +F SGL   G    +  AI  ET  EW IA Q CF+ +  +VT+Y++LG +
Sbjct:   139 YLEVNRRVNNFGSGLTALGLKPKSTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGRE 198

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
             A++H LNE++ T LI                   +K++IY +N    K     G    + 
Sbjct:   199 AVVHGLNESEATYLITSVELLESKLKTALIDINCVKHIIYVDNKTINKAEYPEG----FE 254

Query:   252 VSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
             + S   VE+LG +     V P+ P+ + +A++MYTSGSTG PKGVM+ H N++A      
Sbjct:   255 IHSMQSVEELGSKPENLSVSPNRPTPSDLAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQC 314

Query:   309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
               IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++D SSKIKKG+KGD 
Sbjct:   315 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 374

Query:   369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
             +VLKPTLMAAVP I DR+             + K LF IGY  +L  ++       G + 
Sbjct:   375 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDA 428

Query:   429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
              L + I+FK V+A+LGG +R M+ GGAPLS  +QRF+N+C   P+GQ YGLTETC   T 
Sbjct:   429 PLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTQRFMNVCFCCPVGQGYGLTETCGAGTV 488

Query:   489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
             +E  D + GRVG P+ CC IKL  W EGGY   DKP PRGEIV+GG N++ GYF N  KT
Sbjct:   489 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTIHDKPNPRGEIVIGGKNISMGYFKNEEKT 548

Query:   549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPL 608
             +E Y VDE G  WF TGDIG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +     PL
Sbjct:   549 AEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPL 608

Query:   609 L 609
             +
Sbjct:   609 I 609

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IEA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IEA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

UNIPROTKB|O60488 ACSL4 "Long-chain-fatty-acid--CoA ligase 4" [Homo sapiens (taxid:9606)]

 Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
 Identities = 243/541 (44%), Positives = 329/541 (60%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             ++++P  GA T+  LF+ +     +   LG R++L ++     +G+ F+KL LG+Y+W  
Sbjct:    70 VIDIP--GADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMN 127

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y EV  R  +F SGL   G       AI  ET  EW IA Q CF+ +  +VT+Y++LG++
Sbjct:   128 YLEVNRRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKE 187

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
             A++H LNE++ + LI                 + +K++IY +N    K     G    + 
Sbjct:   188 AVVHGLNESEASYLITSVELLESKLKTALLDISCVKHIIYVDNKAINKAEYPEG----FE 243

Query:   252 VSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
             + S   VE+LG       + PS P+ + +A++MYTSGSTG PKGVM+ H N++A      
Sbjct:   244 IHSMQSVEELGSNPENLGIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQC 303

Query:   309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
               IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++D SSKIKKG+KGD 
Sbjct:   304 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 363

Query:   369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
             +VLKPTLMAAVP I DR+             + K LF IGY  +L  ++       G + 
Sbjct:   364 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDA 417

Query:   429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
              L + ++FK V+A+LGG +R M+ GGAPLS  + RF+N+C   PIGQ YGLTE+C   T 
Sbjct:   418 PLCNLLLFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTV 477

Query:   489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
             +E  D + GRVG P+ CC IKL  W EGGY  +DKP PRGEIV+GG N++ GYF N  KT
Sbjct:   478 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTINDKPNPRGEIVIGGQNISMGYFKNEEKT 537

Query:   549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPL 608
             +E Y VDE G  WF TGDIG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +     PL
Sbjct:   538 AEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPL 597

Query:   609 L 609
             +
Sbjct:   598 I 598

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0015908 "fatty acid transport" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA

GO:0060996 "dendritic spine development" evidence=IEA

GO:0070672 "response to interleukin-15" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IDA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IDA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IDA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0035338 "long-chain fatty-acyl-CoA biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

UNIPROTKB|Q2QC87 ACSL4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
 Identities = 244/541 (45%), Positives = 329/541 (60%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             ++++P  GA T+  LF+ +     +   LG R++L ++     +G+ F+KL LG+Y+W  
Sbjct:    29 VIDIP--GADTLDKLFDHAVAKFGKKDSLGTREVLSEENEMQPNGKVFKKLILGNYKWMN 86

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y EV  R  +F SGL   G    +  AI  ET  EW IA Q CF+ +  +VT+Y++LG++
Sbjct:    87 YLEVNLRVNNFGSGLTALGLKPKSTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKE 146

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
             A++H LNE++ T LI                   +K++IY +N    K     G    + 
Sbjct:   147 AVVHGLNESEATYLITSVELLESKLKTALVDINCVKHIIYVDNKTINKTEYPEG----FE 202

Query:   252 VSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
             + S   VE+LG +     V PS P+ + +A++MYTSGSTG PKGVM+ H N++A      
Sbjct:   203 IHSMQSVEELGSKPENLSVPPSRPNPSDMAIVMYTSGSTGRPKGVMMHHCNLIAGMTGQC 262

Query:   309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
               IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++D SSKIKKG+KGD 
Sbjct:   263 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 322

Query:   369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
             +VLKPTLMAAVP I DR+             + K LF IGY  +L  ++       G + 
Sbjct:   323 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDA 376

Query:   429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
              L + ++FK V+A+LGG +R M+ GGAPLS  + RF+N+C   P+GQ YGLTE+C   T 
Sbjct:   377 PLCNLLLFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPVGQGYGLTESCGAGTV 436

Query:   489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
             +E  D + GRVG P+ CC IKL  W EGGY   DKP PRGEIV+GG N++ GYF N  KT
Sbjct:   437 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKT 496

Query:   549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPL 608
             +E Y VDE G  WF TGDIG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +     PL
Sbjct:   497 AEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPL 556

Query:   609 L 609
             +
Sbjct:   557 I 557

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1PEH9 ACSL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 242/541 (44%), Positives = 328/541 (60%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             ++++P  GA T+  LF+ +     +   LG R++L ++     +G+ F+KL LG Y+W +
Sbjct:    29 VIDIP--GADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGSYKWMS 86

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y EV  R  +F SGL   G       AI  ET  EW IA Q CF+ +  +VT+Y++LG++
Sbjct:    87 YLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKE 146

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
             A++H LNE++ T LI                   +K++IY +N    K     G    + 
Sbjct:   147 AVVHGLNESEATYLITSVELLESKLKTALLDINCVKHIIYVDNKTINKVEYPEG----FE 202

Query:   252 VSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
             + S   VE+LG +     V P+ P+ + +A++MYTSGSTG PKGVM+ H N++A      
Sbjct:   203 IHSMQSVEELGSKPENLSVPPNRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQC 262

Query:   309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
               IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++D SSKIKKG+KGD 
Sbjct:   263 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 322

Query:   369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
             +VLKPTLMAAVP I DR+             + K LF +GY  +L  ++       G + 
Sbjct:   323 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKLGYDYKLEQIKK------GYDA 376

Query:   429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
              L + ++FK V+A+LGG +R M+ GGAPLS  + RF+N+C   P+GQ YGLTE+C   T 
Sbjct:   377 PLCNLLLFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPVGQGYGLTESCGAGTV 436

Query:   489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
             +E  D + GRVG P+ CC IKL  W EGGY   DKP PRGEIV+GG N++ GYF N  KT
Sbjct:   437 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTIHDKPNPRGEIVIGGQNISMGYFKNEEKT 496

Query:   549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPL 608
             +E Y VDE G  WF TGDIG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +     PL
Sbjct:   497 AEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPL 556

Query:   609 L 609
             +
Sbjct:   557 I 557

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IEA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IEA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

RGD|69401 Acsl4 "acyl-CoA synthetase long-chain family member 4" [Rattus norvegicus (taxid:10116)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 244/541 (45%), Positives = 328/541 (60%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             ++++P  GA T+  LF+ +     +   LG R++L ++     +G+ F+KL LG+Y+W  
Sbjct:    29 VIDIP--GADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWIN 86

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y EV  R  +F SGL   G       AI  ET  EW IA Q CF+ +  +VT+Y++LG++
Sbjct:    87 YLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKE 146

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
             A++H LNE++ + LI                   +K++IY +N    +     G      
Sbjct:   147 AVVHGLNESEASYLITSVELLESKLKAALLDINCVKHIIYVDNKTINRAEYPEG----LE 202

Query:   252 VSSFSEVEKLGKR---SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
             + S   VE+LG +   S + PS P+ + +A++MYTSGSTG PKGVM+ H N++A      
Sbjct:   203 IHSMQSVEELGSKPENSSIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQC 262

Query:   309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
               IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++D SSKIKKG+KGD 
Sbjct:   263 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 322

Query:   369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
             +VLKPTLMAAVP I DR+             + K LF IGY  +L  ++       G + 
Sbjct:   323 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDA 376

Query:   429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
              L + I+FK V+A+LGG +R M+ GGAPLS  + RF+N+C   PIGQ YGLTE+C   T 
Sbjct:   377 PLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTV 436

Query:   489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
             +E  D + GRVG P+ CC IKL  W EGGY   DKP PRGEIV+GG N++ GYF N  KT
Sbjct:   437 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKT 496

Query:   549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPL 608
             +E Y VDE G  WF TGDIG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +     PL
Sbjct:   497 AEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPL 556

Query:   609 L 609
             +
Sbjct:   557 I 557

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0006641 "triglyceride metabolic process" evidence=IGI

GO:0007584 "response to nutrient" evidence=IEP

GO:0008610 "lipid biosynthetic process" evidence=IEA;ISO

GO:0015908 "fatty acid transport" evidence=IGI

GO:0030307 "positive regulation of cell growth" evidence=IEA;ISO

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA;ISO

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IEA;ISO

GO:0043025 "neuronal cell body" evidence=IDA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IEA;ISO

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA;ISO

GO:0060996 "dendritic spine development" evidence=IMP

GO:0070672 "response to interleukin-15" evidence=IEP

GO:0005783 "endoplasmic reticulum" evidence=IDA

MGI|MGI:1354713 Acsl4 "acyl-CoA synthetase long-chain family member 4" [Mus musculus (taxid:10090)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 244/541 (45%), Positives = 326/541 (60%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             ++++P  GA T+  LF+ +     +   LG R++L ++     +G+ F+KL LG+Y+W  
Sbjct:    70 VIDIP--GADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWIN 127

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y EV  R  +F SGL   G       AI  ET  EW IA Q CF+ +  +VT+Y++LG +
Sbjct:   128 YLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGRE 187

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
             A++H LNE++ + LI                   +K++IY +N    +     G      
Sbjct:   188 AVVHGLNESEASYLITSVELLESKLKAALVDINCVKHIIYVDNKTINRAEYPEG----LE 243

Query:   252 VSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
             + S   VE+LG +     V PS P+ + +A++MYTSGSTG PKGVM+ H N++A      
Sbjct:   244 IHSMQSVEELGAKPENLSVPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQC 303

Query:   309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
               IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++D SSKIKKG+KGD 
Sbjct:   304 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 363

Query:   369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
             +VLKPTLMAAVP I DR+             + K LF IGY  +L  ++       G + 
Sbjct:   364 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYVQKTLFKIGYDYKLEQIKK------GYDA 417

Query:   429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
              L + I+FK V+A+LGG +R M+ GGAPLS  + RF+N+C   PIGQ YGLTE+C   T 
Sbjct:   418 PLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTV 477

Query:   489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
             +E  D + GRVG P+ CC IKL  W EGGY   DKP PRGEIV+GG N++ GYF N  KT
Sbjct:   478 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKT 537

Query:   549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPL 608
             +E Y VDE G  WF TGDIG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +     PL
Sbjct:   538 AEDYCVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPL 597

Query:   609 L 609
             +
Sbjct:   598 I 598

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO;ISA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO;ISA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005811 "lipid particle" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0015908 "fatty acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=TAS

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0032307 "negative regulation of prostaglandin secretion" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0047676 "arachidonate-CoA ligase activity" evidence=ISO

GO:0060136 "embryonic process involved in female pregnancy" evidence=IMP

GO:0060996 "dendritic spine development" evidence=ISO

UNIPROTKB|O95573 ACSL3 "Long-chain-fatty-acid--CoA ligase 3" [Homo sapiens (taxid:9606)]

 Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
 Identities = 248/542 (45%), Positives = 328/542 (60%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             L  V + G  T+  +F  +       R LG R++L ++     +G+ F+K+ LG Y W +
Sbjct:    77 LASVLYPGCDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLS 136

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y +VF RA +F +GL   G    T  AI  ET  EW IA Q CF  +  +VT+Y++LG  
Sbjct:   137 YEDVFVRAFNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
             A++H+LNET+VT +I                   ++++I    DG     S    GI   
Sbjct:   197 AIVHALNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGI--- 251

Query:   251 TVSSFSEVEKLGKRSPVD--P-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
              V + + VE LG ++ ++  P S P  + +AVIMYTSGSTGLPKGVMI+H NI+A    +
Sbjct:   252 IVHTMAAVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGM 311

Query:   308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
                IP  G  DVY+ YLPLAHVLEL+AE + L  GC IGY S  T+ D SSKIKKG+KGD
Sbjct:   312 AERIPELGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGD 371

Query:   368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
              S+LKPTLMAAVP I DR+               +NLF + Y  ++  +        G  
Sbjct:   372 TSMLKPTLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISK------GRN 425

Query:   428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
               L D+ VF+ VR++LGG IR ++CGGAPLSA +QRF+NIC   P+GQ YGLTE+    T
Sbjct:   426 TPLCDSFVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGT 485

Query:   488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
              SE  D + GRVG P+ CC IKL +W+EGGY  +DKP PRGEI++GG +VT GY+ N  K
Sbjct:   486 ISEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQSVTMGYYKNEAK 545

Query:   548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLP 607
             T   +  DE G  W  TGDIG+  PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +    LP
Sbjct:   546 TKADFFEDENGQRWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLP 605

Query:   608 LL 609
             L+
Sbjct:   606 LV 607

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0014070 "response to organic cyclic compound" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0034379 "very-low-density lipoprotein particle assembly" evidence=IMP

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IMP

GO:0044539 "long-chain fatty acid import" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IMP

GO:0051047 "positive regulation of secretion" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0042998 "positive regulation of Golgi to plasma membrane protein transport" evidence=IMP

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0035338 "long-chain fatty-acyl-CoA biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

RGD|70552 Acsl3 "acyl-CoA synthetase long-chain family member 3" [Rattus norvegicus (taxid:10116)]

 Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
 Identities = 246/542 (45%), Positives = 324/542 (59%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             L  V + G  T+  +F  +       R LG R++L ++     +G+ F+K+ LG Y W +
Sbjct:    77 LASVLYPGCDTLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLS 136

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y +VF RA  F +GL   G       AI  ET  EW IA Q CF  +  +VT+Y++LG  
Sbjct:   137 YEDVFIRALDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
             A++H LNET+VT +I                   ++++I    DG     S    G+   
Sbjct:   197 AIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGV--- 251

Query:   251 TVSSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
              V + + V+ LG ++ VD    S P  + +AVIMYTSGSTG+PKGVMI+H NI+A+   +
Sbjct:   252 IVHTMAAVQALGVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGM 311

Query:   308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
                IP  G  DVY+ YLPLAHVLEL+AE + L  GC IGY S  T+ D SSKIKKG+KGD
Sbjct:   312 ARRIPRLGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGD 371

Query:   368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
              SVLKPTLMAAVP I DR+               +NLF + Y  ++  +        G  
Sbjct:   372 TSVLKPTLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISK------GCS 425

Query:   428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
               L D  VF++VR +LGG IR ++CGGAPLSA +QRF+NIC   P+GQ YGLTE+    T
Sbjct:   426 TPLCDRFVFRNVRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGT 485

Query:   488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
              +E  D + GRVG P+ CC IKL +W+EGGY  +DKP PRGEI++GG NVT GY+ N  K
Sbjct:   486 ITEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAK 545

Query:   548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLP 607
             T   +  DE G  W  TGDIG+  PDGCL+IIDRKKD+VKLQ GEY+SLGK+ +    LP
Sbjct:   546 TKADFFEDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLP 605

Query:   608 LL 609
             L+
Sbjct:   606 LI 607

GO:0003987 "acetate-CoA ligase activity" evidence=TAS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0006633 "fatty acid biosynthetic process" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0007584 "response to nutrient" evidence=IEP

GO:0008152 "metabolic process" evidence=TAS

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0016021 "integral to membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

GO:0034379 "very-low-density lipoprotein particle assembly" evidence=IEA;ISO

GO:0042998 "positive regulation of Golgi to plasma membrane protein transport" evidence=IEA;ISO

GO:0044539 "long-chain fatty acid import" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0051047 "positive regulation of secretion" evidence=IEA;ISO

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJD4	LACS8_ARATH	6, ., 2, ., 1, ., 3	0.7356	0.8567	0.7722	yes	no
O35547	ACSL4_RAT	6, ., 2, ., 1, ., 3	0.4576	0.8305	0.8044	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.976
3rd Layer	6.2.1.3	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XIV0485	long-chain-fatty-acid-CoA ligase family protein (EC-6.2.1.3) (679 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_290034	acyl-CoA oxidase (EC-1.3.3.6) (664 aa)						•			0.903
	grail3.0096010101	acyl-CoA oxidase (EC-1.3.3.6) (639 aa)						•			0.901
	fgenesh4_pg.C_scaffold_3547000001	annotation not avaliable (326 aa)						•			0.899
	fgenesh4_pg.C_LG_XIX000851	acyl-CoA oxidase (EC-1.3.3.6) (680 aa)						•			0.899
	eugene3.00100112	annotation not avaliable (252 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VII0199	acyl-CoA oxidase (EC-1.3.3.6) (689 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_V0077	acyl-CoA oxidase (EC-1.3.3.6) (691 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_VI1706	acyl-CoA oxidase (EC-1.3.3.6) (436 aa)						•			0.899
	gw1.XVI.1394.1	hypothetical protein (823 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	649
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-125
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-121
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-116
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	1e-95
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	7e-93
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	8e-91
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	5e-89
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	1e-79
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-66
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	3e-57
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-46
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-45
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	7e-45
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	4e-44
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-40
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-38
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	6e-37
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	9e-36
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	2e-33
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-30
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	7e-30
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	5e-29
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-28
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	9e-28
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-27
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	4e-26
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-25
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-24
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	3e-24
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	5e-24
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	6e-24
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-23
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	9e-23
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-22
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	2e-22
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-22
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	2e-21
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	3e-21
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	7e-21
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	3e-20
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-19
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	3e-19
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-18
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	3e-18
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	4e-18
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	5e-18
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	7e-18
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	2e-17
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	8e-17
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-16
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	3e-16
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	4e-16
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	7e-16
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-15
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	3e-15
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-14
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-14
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-14
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	4e-14
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	5e-14
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	6e-14
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	6e-14
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	6e-14
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	6e-14
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-13
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-13
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-13
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	4e-13
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	4e-13
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	4e-13
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-13
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	9e-13
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	1e-12
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-12
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-12
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	2e-12
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	3e-12
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-12
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	4e-12
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	4e-12
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	4e-12
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	6e-12
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	8e-12
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	1e-11
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-11
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	3e-11
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	5e-11
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-11
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	9e-11
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-10
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-10
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-10
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-10
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	2e-10
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-10
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-10
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	4e-10
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	4e-10
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	5e-10
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	5e-10
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	5e-10
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	8e-10
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-09
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-09
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-09
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	3e-09
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	3e-09
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	3e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	3e-09
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	3e-09
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	5e-09
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	5e-09
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	9e-09
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-08
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-08
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-08
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-08
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-08
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-08
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-08
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-08
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-08
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	4e-08
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	6e-08
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	7e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-07
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-07
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	3e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-07
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	6e-07
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	7e-07
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	8e-07
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	8e-07
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-06
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-06
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-06
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	2e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	2e-06
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	2e-06
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-06
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	4e-06
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	4e-06
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	4e-06
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	4e-06
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	5e-06
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	5e-06
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-06
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	8e-06
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	8e-06
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	9e-06
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	9e-06
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-05
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-05
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	1e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	1e-05
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-05
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-05
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	3e-05
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	3e-05
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-05
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	4e-05
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-05
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-05
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	4e-05
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	4e-05
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	5e-05
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	5e-05
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	5e-05
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	6e-05
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	8e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	8e-05
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	1e-04
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	1e-04
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-04
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-04
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-04
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	3e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-04
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-04
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	5e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-04
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	0.001
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	0.001
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	0.001
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	0.001
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	0.001
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.001
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	0.002
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	0.002
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	0.002
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	0.002
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	0.002
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	0.003
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	0.003
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.004
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	0.004
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	0.004
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	0.004

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 1133 bits (2932), Expect = 0.0
 Identities = 430/583 (73%), Positives = 502/583 (86%), Gaps = 1/583 (0%)

Query: 25  VGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTM 84
           +GA IV +L+P+LL++++   KK K+RGVPV+VGGEPGYAIRNA+ PELVE PW+GA+T+
Sbjct: 1   MGAYIVGVLVPLLLTLLLRGSKKGKKRGVPVDVGGEPGYAIRNARFPELVETPWEGATTL 60

Query: 85  AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFA 144
           AALFEQSCK +   R LG RKL+ ++F T+SDGRKFEKLHLG+YEW TYG+VF+R C+FA
Sbjct: 61  AALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFA 120

Query: 145 SGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204
           SGLV  GHN + R AI A+T  EW IA QGCFRQ+ITVVTIY+SLGE+AL HSLNET+VT
Sbjct: 121 SGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVT 180

Query: 205 TLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKR 264
           T+ICDSKQLKKL  +SS L+T+K VIY +++G + DS +SG  SNWTVSSFSEVEKLGK 
Sbjct: 181 TVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGS-SNWTVSSFSEVEKLGKE 239

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
           +PVDP LPS N +AVIMYTSGSTGLPKGVM+THGNIVAT A + T++P  G++DVYLAYL
Sbjct: 240 NPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYL 299

Query: 325 PLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384
           PLAH+LELAAES+M   G AIGYGS LT+TDTS+KIKKGTKGD S LKPTLM AVPAI D
Sbjct: 300 PLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILD 359

Query: 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLG 444
           RVR+GV KKV+ KGGL K LF+I YKRRLAA+EGSWFGAWGLE++LWDA+VFK +RAVLG
Sbjct: 360 RVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLG 419

Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
           GRIRFM+ GGAPLS D+QRFINIC+GAPIGQ YGLTETCAG+TFSEWDD SVGRVGPP+P
Sbjct: 420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLP 479

Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYT 564
           CCY+KLVSW+EGGY  SDKPMPRGEIV+GG +VT GYF N  KT EVYKVDERGM WFYT
Sbjct: 480 CCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYT 539

Query: 565 GDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLP 607
           GDIGQ +PDGCLEIIDRKKDIVKLQHGEY+SLGK+ +  +V P
Sbjct: 540 GDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSP 582

Length = 696

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  604 bits (1561), Expect = 0.0
 Identities = 212/475 (44%), Positives = 280/475 (58%), Gaps = 58/475 (12%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           G YEW +Y EV +RA +  SGL   G     +  I AE   EW I  Q CF QS+ +V +
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
           Y +LGE+A+ + LNET+++ + CD+                                   
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDA----------------------------------- 85

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
                 V SF E+E+LGK++ V P+ P    +A IMYTSG+TG PKGVM+THGNIVA  A
Sbjct: 86  ----VKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVA 141

Query: 306 AIKTLIPN-PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364
            I  ++P   G +DVY++YLPLAH+ E   E++ L  G  IGY S  T         +G 
Sbjct: 142 GINKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDT---------RGL 192

Query: 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
           KGD+  LKPT+   VP + DR+ +G++ KV  KGGL + LFN  Y  +LAA+        
Sbjct: 193 KGDIKELKPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGH---- 248

Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484
           G    LWD +VFK ++A LGGR+R M+ GGAPLS D+Q F+ + +G P+ Q YGLTETCA
Sbjct: 249 GYASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCA 308

Query: 485 GSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544
           G T S+  D + G VGPP+PCC IKLV   E GY   D P PRGEI + G NV  GY+ N
Sbjct: 309 GGTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKN 367

Query: 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
           P KT+E +  D  G  WF+TGDIG+  PDG L+IIDRKK++ KL  GEY++L K+
Sbjct: 368 PEKTAEAFDED--G--WFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKL 418

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  384 bits (989), Expect = e-125
 Identities = 156/493 (31%), Positives = 238/493 (48%), Gaps = 44/493 (8%)

Query: 116 DGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGC 175
           DG       LG +E  TY E+++R  + ASGL++ G     R AI A    EW IA    
Sbjct: 31  DGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAI 90

Query: 176 FRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235
                  V IYS+   + L + LNE++   +  ++++L  L             +    D
Sbjct: 91  LALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIID 150

Query: 236 GSEKDSGVSGGISNWTVSS-----FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
                  V        V          ++  G    + P  P  + +A I+YTSG+TG P
Sbjct: 151 --LVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAP--PKPDDLATIIYTSGTTGTP 206

Query: 291 KGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST 350
           KGVM+TH N++A  A I  ++P  G  D  L++LPLAH+ E A E  +        YG  
Sbjct: 207 KGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLA------LYGGV 260

Query: 351 LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFN---- 406
             +     +       D+  ++PT+M  VP ++++V +G+++KV +   + + LF     
Sbjct: 261 TVLFKEDPRT---LLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALK 317

Query: 407 IGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466
           + YK+   A+ G    +W L   + D +VF+ +R  LGGRIR+ + GGAPLS +   F  
Sbjct: 318 VAYKKISRALLGGGPLSWLL---VADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR 374

Query: 467 ICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526
             +G PI + YGLTET A  + +  D   +G VG P+P   +K+                
Sbjct: 375 S-LGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD-------------- 419

Query: 527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
            GEI+V G NV  GY+ NP  T+E     E G  WF TGD+G++  DG L I  RKK+++
Sbjct: 420 DGEILVRGPNVMKGYYKNPEATAEA--FTEDG--WFRTGDLGELDEDGYLVITGRKKELI 475

Query: 587 KLQHGEYISLGKI 599
           KL +G+ I+   I
Sbjct: 476 KLSNGKNIAPEPI 488

Length = 613

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  375 bits (966), Expect = e-121
 Identities = 183/532 (34%), Positives = 280/532 (52%), Gaps = 37/532 (6%)

Query: 78  WKGASTMAALFEQSCKSHPQDRFLGKRKL--LGKDFVTASDGRK--FEKLHLGDYEWQTY 133
           W          E+ CK     R L  R +  + K+ V  +DG++   E  H  +  + TY
Sbjct: 65  WYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITY 124

Query: 134 GEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDA 193
            E+++R  +F  GL   G    +  AI  ET  EW  +  G + QS+   T+Y++LGEDA
Sbjct: 125 AELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDA 184

Query: 194 LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKN--VIYFENDGSEKDSGVSGGISNWT 251
           L ++L ET+   ++C+ K +  L  +  S   + N  +IY ++  +  D+          
Sbjct: 185 LAYALRETECKAIVCNGKNVPNLLRLMKS-GGMPNTTIIYLDSLPASVDTE------GCR 237

Query: 252 VSSFSEVEKLGKR--SPVDPSLPSQNG-VAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
           + ++++V   G    S    ++P  N  +A+IMYTSG+TG PKGVM THG++ A   A++
Sbjct: 238 LVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALE 297

Query: 309 ----TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364
                LI  P   + Y +YLPLAH++E    +I L  G  IG+GS  T+TDT ++     
Sbjct: 298 DRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDTFAR----P 353

Query: 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
            GD++  +P  +  VP IFD +++ V  K+   G L + +F+  Y+ RL A++       
Sbjct: 354 HGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKE------ 407

Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484
           G +   W+  VF + RAVLGGR+R M+ GG PLSA +Q F+N+  G  + Q +GLTET  
Sbjct: 408 GKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVC 466

Query: 485 GSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544
                   D     VG  +    +KL+  +E  YK +D P PRGEI++ G  +  GY+  
Sbjct: 467 CGGIQRTGDLEPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFLFKGYYKQ 524

Query: 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596
              T EV  +DE G  WF+TGD+G +  +G L II R K + K   GEYI+L
Sbjct: 525 EELTREV--LDEDG--WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIAL 572

Length = 700

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  360 bits (927), Expect = e-116
 Identities = 190/561 (33%), Positives = 278/561 (49%), Gaps = 60/561 (10%)

Query: 60  EPGYAI--------------RNAQIP-ELVEV--PWKGASTMAALFEQSCKSHPQDRFLG 102
           E GY++              R+A+ P +LV          T+   F  + ++    ++LG
Sbjct: 5   EQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLG 64

Query: 103 KRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162
            R           DG       +G+Y+W TYGE      +  SGLV  G        +  
Sbjct: 65  TR--------IRVDGT------VGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYF 110

Query: 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS 222
               EW I    C   S   V +Y +LG DA+   +N  +V  + C  + L  L +  S 
Sbjct: 111 INRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSE 170

Query: 223 LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282
           + +++ ++          S  SG  +   + ++S++   G+ SP     P    VA I Y
Sbjct: 171 IPSVRLIVVVGGADEPLPSLPSG--TGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICY 228

Query: 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG 342
           TSG+TG PKGV++THGN++A  A           SDV+++YLPLAH+ E   + +ML  G
Sbjct: 229 TSGTTGTPKGVVLTHGNLIANVAGSSLSTKF-YPSDVHISYLPLAHIYERVNQIVMLHYG 287

Query: 343 CAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400
            A+G+  G  L + D           D++ L+PT+  +VP +++R+ +G+   V+E GGL
Sbjct: 288 VAVGFYQGDNLKLMD-----------DLAALRPTIFCSVPRLYNRIYDGITNAVKESGGL 336

Query: 401 TKNLFNIGYK-RRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA 459
            + LFN  Y  ++ A   G           +WD +VF  ++A LGGR+RFM  G +PLS 
Sbjct: 337 KERLFNAAYNAKKQALENGKNPSP------MWDRLVFNKIKAKLGGRVRFMSSGASPLSP 390

Query: 460 DSQRFINICMGAPIGQAYGLTET-CAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGY 518
           D   F+ IC G  + + YG+TET C  S   E  D   G VG P P C +KLV   E  Y
Sbjct: 391 DVMEFLRICFGGRVLEGYGMTETSCVISGMDE-GDNLSGHVGSPNPACEVKLVDVPEMNY 449

Query: 519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEI 578
            + D+P PRGEI V G  +  GY+ +  +T EV  +DE G  W +TGDIG   P G L+I
Sbjct: 450 TSEDQPYPRGEICVRGPIIFKGYYKDEVQTREV--IDEDG--WLHTGDIGLWLPGGRLKI 505

Query: 579 IDRKKDIVKLQHGEYISLGKI 599
           IDRKK+I KL  GEYI+  KI
Sbjct: 506 IDRKKNIFKLAQGEYIAPEKI 526

Length = 651

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  307 bits (788), Expect = 1e-95
 Identities = 169/522 (32%), Positives = 269/522 (51%), Gaps = 51/522 (9%)

Query: 87  LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASG 146
           +F +S + +P ++ LG R+++        DG+      +G Y W+TY EV++      S 
Sbjct: 47  IFSKSVEKYPDNKMLGWRRIV--------DGK------VGPYMWKTYKEVYEEVLQIGSA 92

Query: 147 LVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206
           L   G    +R  I    C +W +A + C   S+  V +Y +LG  A+ + ++  ++  +
Sbjct: 93  LRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFV 152

Query: 207 ICDSKQLKK-LSAVSSSLKTIKNVIYFENDGSE-KDSGVSGGISNWTVSSFSEVEKLGKR 264
               K++K+ L     S K +K ++ F +   E  D     G+  +   S+ +   +GK 
Sbjct: 153 FVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTY---SWIDFLHMGKE 209

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN----PGRSDVY 320
           +P + + P    +  IMYTSG++G PKGV++TH  +      +   +          DVY
Sbjct: 210 NPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVY 269

Query: 321 LAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAA 378
           L++LPLAH+L+   E      G ++GY  G    + D           D+  LKPTL+A 
Sbjct: 270 LSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRD-----------DLMELKPTLLAG 318

Query: 379 VPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM---LWDAIV 435
           VP +F+R+ EG+ K ++E     + +FN  YK +LA     W       +    + D + 
Sbjct: 319 VPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLA-----WMNRGYSHKKASPMADFLA 373

Query: 436 FKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS 495
           F+ V+A LGGR+R +I GGAPLS + + F+ +   A + Q YGLTET   +T    D+  
Sbjct: 374 FRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMC 433

Query: 496 -VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554
            +G VG P     ++L    E GY    +P PRGEI V G  + +GY+ NP  T EV K 
Sbjct: 434 MLGTVGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPELTEEVMKD 492

Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596
                 WF+TGDIG++ P+G L+IIDRKK+++KL  GEY++L
Sbjct: 493 G-----WFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVAL 529

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  300 bits (770), Expect = 7e-93
 Identities = 178/559 (31%), Positives = 279/559 (49%), Gaps = 71/559 (12%)

Query: 69  QIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDY 128
            +P  ++ PW+        F  + K +P ++ LG+R++        +D +      +G Y
Sbjct: 37  DLPADIDSPWQ-------FFSDAVKKYPNNQMLGRRQV--------TDSK------VGPY 75

Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
            W TY EV+D A    S + + G N   R  I    C EW IA + C  Q IT V +Y +
Sbjct: 76  VWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDT 135

Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAV----SSSLKTIKNVIYFENDGSEKDSGVS 244
           LG +A+   +N  +V+       ++  + +     SS+LKTI  V + +    +K+    
Sbjct: 136 LGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTI--VSFGDVSSEQKEEAEE 193

Query: 245 GGISNWTVSSFSEVEKLGKRSPVDPSLPS--QNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
            G+S ++   FS +  L      D  LP   +  +  IMYTSG+TG PKGV++T+  I+A
Sbjct: 194 LGVSCFSWEEFSLMGSL------DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIA 247

Query: 303 TAAAIKTLIPNPGR----SDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDT 356
              +   L+    R     D Y +YLPLAHV +   E+  +  G +IG+  G    + + 
Sbjct: 248 EVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLME- 306

Query: 357 SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAV 416
                     DV  LKPT+   VP ++DR+  G+++K+   G L K LF+  Y  +L  +
Sbjct: 307 ----------DVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNL 356

Query: 417 EGSWFGAWGLERM----LWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP 472
                   GL++       D +VF  ++  LGGR+R ++ G APL    + F+ +   + 
Sbjct: 357 RK------GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSV 410

Query: 473 IGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKT-SDKPMPRGEI 530
           + Q YGLTE+C G   S  +    VG VG P+     +L S  E GY   SD  +PRGEI
Sbjct: 411 LSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSD--VPRGEI 468

Query: 531 VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQH 590
            + G  + +GY      T EV  +D     WF+TGDIG+  P+G ++IIDRKK+I KL  
Sbjct: 469 CLRGNTLFSGYHKRQDLTEEVL-IDG----WFHTGDIGEWQPNGAMKIIDRKKNIFKLSQ 523

Query: 591 GEYISLGKIPSTTTVLPLL 609
           GEY+++  + +T +  PL+
Sbjct: 524 GEYVAVENLENTYSRCPLI 542

Length = 660

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  288 bits (740), Expect = 8e-91
 Identities = 134/470 (28%), Positives = 203/470 (43%), Gaps = 124/470 (26%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           G ++  T+ E+ +R    A+GL+  G     R AILAE   EW IA           V I
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
           Y +   +         +V  ++ DS       A          V++ E+   +       
Sbjct: 61  YPTSSPE---------EVAYILNDSG------AR---------VVFVEDKPDD------- 89

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
                                          +A ++YTSG+TG PKGVM+TH N++A AA
Sbjct: 90  -------------------------------LATLIYTSGTTGNPKGVMLTHRNLLAQAA 118

Query: 306 AIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTK 365
           A+  +IP     D  L++LPLAHV E       L     +  G+ +   ++   + +   
Sbjct: 119 ALLEVIP-LSPGDRVLSFLPLAHVFEQ-----RLGEYLPLSSGARVNFAESPETLLE--- 169

Query: 366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
            D+  ++PT+  AVP +++++  G+  KV   G L + LF                  W 
Sbjct: 170 -DLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLF-----------------RW- 210

Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
                          A+ GGR+RF + GGAPL  +   F    +G PI + YGLTET   
Sbjct: 211 ---------------ALGGGRLRFAVSGGAPLPPEVLEFFRA-LGIPILEGYGLTETSGV 254

Query: 486 STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
           +T +   D  +G VG P+P   +++                 GEI+V G NV  GY+ NP
Sbjct: 255 ATVNRPGDIRIGTVGKPLPGVEVRIA--------------EDGEILVRGPNVMKGYYKNP 300

Query: 546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595
             T+E   +DE G  W +TGDIG++  DG L I DRKKD++    G+ I+
Sbjct: 301 EATAEA--LDEDG--WLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIA 346

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  282 bits (724), Expect = 5e-89
 Identities = 126/472 (26%), Positives = 183/472 (38%), Gaps = 79/472 (16%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +RA   A+ L   G     R AIL     EW +A     +     V +  SL  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           + L + L +++   LI D + L KL  V   L  +  +I                  +  
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIV--------------GDDGE 106

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
                + E L   S   P+ P   + +A I+YTSG+TG PKGVM+TH N++A AA +   
Sbjct: 107 GLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAER 166

Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
                  D  L  LPL     +      L AG       TL +    +         +  
Sbjct: 167 FG-LTPGDRVLLLLPLHFDGSVWEIFGPLLAGG------TLVLVPKFTLDPARLLDLIEK 219

Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
            K T++  VP +   +                                       L+   
Sbjct: 220 YKVTVLYGVPTLLRLL---------------------------------------LKAPE 240

Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFS 489
                  S+R V        + GG PL  +  +R      G P+   YG TET   +T +
Sbjct: 241 EKKYDLSSLRLV--------LSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATAN 292

Query: 490 EWDDP--SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
              DP    G +G P+P   +K++  DE G      P   GE+ + G  V  GY N+P  
Sbjct: 293 LPGDPEVKPGSIGRPLPGVEVKVL--DEEG--EPVPPGEVGELCIRGPGVARGYLNDPEL 348

Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
           T+E +   E G   + TGD+G+   DG LEI+ RK D VK+  GE I  G+I
Sbjct: 349 TAERF--VEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKI-RGERIEPGEI 397

Length = 412

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  265 bits (679), Expect = 1e-79
 Identities = 172/538 (31%), Positives = 272/538 (50%), Gaps = 57/538 (10%)

Query: 77  PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
           P +G  +   +F  S + +P +  LG+R++         DG+       G Y WQTY EV
Sbjct: 40  PIEGMDSCWDVFRMSVEKYPNNPMLGRREI--------VDGKP------GKYVWQTYQEV 85

Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
           +D      + L + G   + +  I      EW I+ + C    +  V +Y +LG  A+  
Sbjct: 86  YDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEF 145

Query: 197 SLNETQVTTLICDSKQLKKL-SAVSSSLKTIKNVIYFENDGSE-KDSGVSGGISNWTVSS 254
            ++ ++V+ +  + K++ +L     +S + +K V+ F     E K+   + G+    + +
Sbjct: 146 IISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGL---VIYA 202

Query: 255 FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
           + E  KLG+    D  +  ++ +  IMYTSG+TG PKGVMI++ +IV   A +  L+ + 
Sbjct: 203 WDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSA 262

Query: 315 GRS----DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
             +    DVYL+YLPLAH+ +   E   +  G AIG+       D    I+     D+  
Sbjct: 263 NAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWR----GDVKLLIE-----DLGE 313

Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGY-------KRRLAAVEGSWFGA 423
           LKPT+  AVP + DRV  G+ KK+ + G L K +F+  +       K+  + VE S    
Sbjct: 314 LKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPL-- 371

Query: 424 WGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC 483
                   D +VF  V+  LGG +R ++ G APL++  + F+ +     + Q YGLTE+C
Sbjct: 372 -------CDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 484 AGSTFSEWDDP--SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY 541
           AG TF    D    +G VGPPVP   I+L S  E  Y       PRGEI + G  + +GY
Sbjct: 425 AG-TFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALAS-TPRGEICIRGKTLFSGY 482

Query: 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
           +     T EV  +D     W +TGD+G+  P+G ++IIDRKK+I KL  GEY+++  I
Sbjct: 483 YKREDLTKEVL-IDG----WLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENI 535

Length = 666

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  226 bits (578), Expect = 2e-66
 Identities = 135/513 (26%), Positives = 198/513 (38%), Gaps = 102/513 (19%)

Query: 82  STMAALFEQSCKSHPQD---RFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFD 138
            T+A+L E++ + +P      FLG+   L                        TY E+  
Sbjct: 11  LTLASLLERAARRNPDRPALIFLGRGGRL------------------------TYRELDR 46

Query: 139 RACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSL 198
           RA   A+ L   G     R AIL     E+ IAF    R     V +   L    L + L
Sbjct: 47  RANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYIL 106

Query: 199 NETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEV 258
           N+     LI  ++    L AV+ +L  +  V+            + G   +    +   +
Sbjct: 107 NDAGAKVLITSAEFAALLEAVAEALPVVLVVL------------LVGDADDRLPITLEAL 154

Query: 259 EKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-TLIPNPGRS 317
              G     D      + +A ++YTSG+TGLPKGV++TH N++A AA I   L       
Sbjct: 155 AAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPD 214

Query: 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMA 377
           DV L++LPL H+  L    I+      +G G TL +        +     +   K T+++
Sbjct: 215 DVVLSWLPLFHIFGL----IVGLLAPLLG-GGTLVLLSPEPFDPEEVLWLIEKYKVTVLS 269

Query: 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFK 437
            VP                              R L                  +     
Sbjct: 270 GVPTFL---------------------------RELLD--------------NPEKDDDD 288

Query: 438 SVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS- 495
                L   +R ++ GGAPL  +  +RF        I + YGLTET    T +  DD   
Sbjct: 289 -----LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLA 343

Query: 496 -VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554
             G VG P+P   +++V   +GG      P   GEI V G NV  GY+N P  T+E +  
Sbjct: 344 KPGSVGRPLPGVEVRIVD-PDGG---EVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDE 399

Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           D     W  TGD+G V  DG L I+ R KD++ 
Sbjct: 400 D----GWLRTGDLGYVDEDGYLYIVGRLKDLII 428

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  203 bits (518), Expect = 3e-57
 Identities = 140/495 (28%), Positives = 223/495 (45%), Gaps = 69/495 (13%)

Query: 126 GDYEWQ--TYGEVFDRACSFASGLVNFG----HNVDTRAAILAETCVEWFIAFQGCFRQS 179
           G   W   TY + ++     A   +  G    H+V     IL     EWFIA  G     
Sbjct: 2   GKDGWHTLTYKQYYEACRQAAKAFLKLGLERFHSV----GILGFNSPEWFIAAVGAIFAG 57

Query: 180 ITVVTIYSSLGEDALIHSLNETQVTTLICDS-KQLKKLSAVSSSLKTIKNVIYFENDGSE 238
              V IY++   +A  +    ++   L+ D+ KQL+K+ A+   L  +K +I +     E
Sbjct: 58  GIAVGIYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKE 117

Query: 239 KDSGVSGGISNWTVSSFSEVEKLGKRSP---VDPSLPSQ--NGVAVIMYTSGSTGLPKGV 293
           K+  +          S+ E  +LG+  P   +D  + SQ  N    ++YTSG+TG+PKGV
Sbjct: 118 KEPNLY---------SWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGV 168

Query: 294 MITHGNIVATAAAI-KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352
           M++H NI  TA A  K +       +  ++YLPL+H+   AA+ + +     I  G  + 
Sbjct: 169 MLSHDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHI---AAQILDIWLP--ISVGGCVY 223

Query: 353 MTDTSSKIKKGTKGDVSVL---KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLF---- 405
                +   KGT   V  L   +PT    VP ++++++E +     +  GL + +     
Sbjct: 224 FAQPDA--LKGTL--VKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAK 279

Query: 406 NIGYKRRLAAVEGSW--FGAWGLERMLWDAIVFKSVRAVLG-GRIRFMICGGAPLSADSQ 462
            +G +  L  + G       + L + L    VFK VR  LG  R +    G AP+S ++ 
Sbjct: 280 GVGLETNLKLMGGESPPPMCFRLAKKL----VFKKVRKALGLDRCQKFFTGAAPISRETL 335

Query: 463 RF---INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYK 519
            F   +NI    PI + YG++ET    T S   +  +   G  +P C  K+ + D  G  
Sbjct: 336 EFFLSLNI----PIMELYGMSETSGPHTVSNPQNYRLLSCGKALPGCETKIHNPDADGI- 390

Query: 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEII 579
                   GEI + G +V  GY N   KT E   +DE G  W ++GD+G +  DG L I 
Sbjct: 391 --------GEICIWGRHVFMGYLNMEEKTEE--AIDEDG--WLHSGDLGFLDDDGFLYIT 438

Query: 580 DRKKDIVKLQHGEYI 594
            R K+++    GE +
Sbjct: 439 GRIKELIITAGGENV 453

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  170 bits (434), Expect = 2e-46
 Identities = 128/514 (24%), Positives = 192/514 (37%), Gaps = 152/514 (29%)

Query: 85  AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFA 144
           A L E++ +  P            +  +T   GRK            TY E+ + +  FA
Sbjct: 2   ADLLERAARRFP-----------DRPALT-FFGRKL-----------TYAELDELSDRFA 38

Query: 145 SGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204
           + L   G     R A++   C ++ IA+ G  +    VV +        L H LN++   
Sbjct: 39  AYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAK 98

Query: 205 TLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKR 264
            LI                                              SF +    G  
Sbjct: 99  VLIV-------------------------------------------AISFEDALASGAP 115

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS-DVYLAY 323
            P+ P   S + +AV+ YT G+TG+PKG M+TH N+VA    I   + +     D +L  
Sbjct: 116 LPL-PVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTA 174

Query: 324 LPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLK------PTLMA 377
           LPL H+  L      +     +  G+T  +              ++VLK       T+  
Sbjct: 175 LPLFHIFGL-----TVNMLLGLRLGATNVLVPNFR--------PINVLKEIKRYRFTIFP 221

Query: 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFK 437
            VP +++                   L N                    ++       F 
Sbjct: 222 GVPTLYNA------------------LLN----------------HPEFKKYD-----FS 242

Query: 438 SVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS- 495
           S+R          I GGAPL  + ++RF     GAP+ + YGLTET   +T +  D    
Sbjct: 243 SLRLC--------ISGGAPLPVEVAERFEEK-TGAPLVEGYGLTETSPVTTVNPLDGERK 293

Query: 496 VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVY 552
            G +G P+P   +K+V  DEG        +P    GE+VV G  V  GY+N P +T+EV 
Sbjct: 294 PGSIGLPLPGTEVKIVD-DEG------NELPPGEVGELVVRGPQVMKGYWNRPEETAEVL 346

Query: 553 KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
                   W  TGDIG +  DG   I+DRKKD++
Sbjct: 347 TDG-----WLRTGDIGYMDEDGYFYIVDRKKDMI 375

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  168 bits (429), Expect = 2e-45
 Identities = 124/469 (26%), Positives = 202/469 (43%), Gaps = 77/469 (16%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ +V D+A   A+ L + G     R AIL++ C EW IA    +      V +Y +L  
Sbjct: 8   TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67

Query: 192 DALIHSLNETQVTTLIC---DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
           + + + L  +    L     D     K + V   L TI   I F     +          
Sbjct: 68  ETIRYVLEHSDAKALFVGKLDDWDAMK-AGVPEGLPTI---ILFPYSTLKDHY------- 116

Query: 249 NWTVSSFSEVEKLGKRSPVDPS-LPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
                 + ++  L    P+    LP    +A I+YTSG+TG PKGVM++ G     A   
Sbjct: 117 -----KWDDL--LAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGT 169

Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKG 366
             +I     +D  L+YLPLAH+ E    E   L +G  + +  +L   DT +        
Sbjct: 170 IEII-GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESL---DTFAA------- 218

Query: 367 DVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGL 426
           D+   +PT+  +VP ++ + ++G++ K+  +      L  I                   
Sbjct: 219 DLQRARPTVFFSVPRLWTKFQQGILAKLPPE--KLNLLLKI------------------- 257

Query: 427 ERMLWDAIVFKSVRAVLG-GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
              +  ++V K +   LG  + R    G AP+      +    +G PI + YG+TE  A 
Sbjct: 258 --PILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYGMTENFAY 314

Query: 486 STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
           ST +   D  +G VG P+P   +K+    E G           EI++    + +GY+ +P
Sbjct: 315 STLNYPGDRRIGTVGKPIPGVELKI---SEDG-----------EILIRSPGLMSGYYKDP 360

Query: 546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
            KT+E +  D  G  W +TGD G++  DG L+I  R K++ K   G+Y+
Sbjct: 361 EKTAEAFTED--G--WLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYV 405

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  167 bits (424), Expect = 7e-45
 Identities = 119/465 (25%), Positives = 186/465 (40%), Gaps = 94/465 (20%)

Query: 132 TYGEVFDRACSFASGLVNFG---HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
           TY E+       A+GL   G    +V     +L+   +E+ + F         V T    
Sbjct: 34  TYAELERLVRRLAAGLAARGGRKGDV---VLLLSPNSLEFPVVFLAVLSAGAVVTTANPL 90

Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
                +   + ++     I  S+  +KL++++      + V+         DS   G  +
Sbjct: 91  YTPAEIAKQVKDSGAKLAITTSELAEKLASLAL-----EPVVLL-------DSADDGSAA 138

Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
              +    E E       V      Q+ VA + Y+SG+TG  KGVM+TH N++A  A + 
Sbjct: 139 IDDLLFADEPEP---PVVVIK----QDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLV 191

Query: 309 TLI-PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT--DTSSKIKKGTK 365
               PN  R DV L  LP+ H+  L   +++L A   +G  + + M   D    +     
Sbjct: 192 AGEGPNFDREDVTLCVLPMFHIYGL---TVILLALLRLG-ATVVVMPRFDLEKFLAA--- 244

Query: 366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
             +   K T +  VP I       V+        L K+   I  K  L+++         
Sbjct: 245 --IEKYKVTHLPVVPPI-------VL-------ALVKH--PIVDKYDLSSL--------- 277

Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCA 484
                                 + +  G APL  + ++ F     G  +GQ YG+TE+  
Sbjct: 278 ----------------------KQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSP 315

Query: 485 GST--FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542
            +T       DP  G VG  VP    K+V  + G    S  P   GE+ V G  V  GY 
Sbjct: 316 VTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETG---ESLPPNQPGELWVRGPQVMKGYL 372

Query: 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           NNP  T+E   +D+ G  W +TGD+G    DG L I+DR K+++K
Sbjct: 373 NNPEATAET--IDKDG--WLHTGDLGYFDEDGYLFIVDRLKELIK 413

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  165 bits (420), Expect = 4e-44
 Identities = 116/487 (23%), Positives = 182/487 (37%), Gaps = 113/487 (23%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +R    A+ L   G     R A+      E+  A+    +    +  I   L  
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           + + + LN+ +   ++ DS+ +  L+A+   L T++ VI  E DG               
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIV-EGDGPAAPLAP-------E 144

Query: 252 VSSFSEVEKLGKRSPVDPSL-PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
           V  + E+  L   S         +N  A ++YTSG+TG PKGV+++H N+   + A+   
Sbjct: 145 VGEYEEL--LAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAW 202

Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY------GSTLTMTDTSSKIKKGT 364
           +    R DVYL  +P+ HV       + L AG            + L + +T        
Sbjct: 203 L-KLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDLIET-------- 253

Query: 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
                  + T   AVP I+    + ++K                  R         F + 
Sbjct: 254 ------ERVTFFFAVPTIW----QMLLK----------------APR----AYFVDFSSL 283

Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-----SQRFINICMGAPIGQAYGL 479
                                  R +I GGA L         ++F     G  + Q YG+
Sbjct: 284 -----------------------RLVIYGGAALPPALLREFKEKF-----GIDLVQGYGM 315

Query: 480 TETCAGSTFS--EWDDPSV----GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-----G 528
           TET    +    E   P         G P+P    ++V  D+ G       +P      G
Sbjct: 316 TETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIV--DDDG-----DELPPDGGEVG 368

Query: 529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588
           EI+V G  +  GY+N P  T+E          W +TGD+G +  DG L I DR KD++  
Sbjct: 369 EIIVRGPWLMQGYWNRPEATAETIDGG-----WLHTGDVGYIDEDGYLYITDRIKDVII- 422

Query: 589 QHGEYIS 595
             GE I 
Sbjct: 423 SGGENIY 429

Length = 521

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  149 bits (379), Expect = 3e-40
 Identities = 89/312 (28%), Positives = 135/312 (43%), Gaps = 63/312 (20%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
            A I+YTSG+TG PKGV+++H N++A A A+   I      DV L+ LPL HV+      
Sbjct: 2   PAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGL-TEGDVLLSVLPLFHVVGG---- 56

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396
                  A+  G T+ + +         +  +   + T++  VP ++D +      K  E
Sbjct: 57  -GSGLLGALLAGGTVVLYEGFPFPLSFLE-LIEQYRVTVLFGVPTLYDALA-----KAAE 109

Query: 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAP 456
             G             L+                                +R +I GG P
Sbjct: 110 DRG-----------YDLS-------------------------------SLRLLISGGEP 127

Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP-SVGRVGPPVPCCYIKLVSWDE 515
           LS +         GAPI + YGLTET   ++ +   +    G VG PVP   +++V  +E
Sbjct: 128 LSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVVD-EE 186

Query: 516 GGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGC 575
           G      +    GE+VV G  V  GY+NNP +T+      E G  W+ TGD+G +  +G 
Sbjct: 187 GKPLPPGEV---GELVVRGPWVMKGYWNNPPETT--AAATEDG--WYRTGDLGYLDEEGY 239

Query: 576 LEIIDRKKDIVK 587
           L I  R KD++K
Sbjct: 240 LYITGRSKDLIK 251

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  145 bits (368), Expect = 2e-38
 Identities = 92/325 (28%), Positives = 132/325 (40%), Gaps = 87/325 (26%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
            A+I YTSG+TG PKG M+TH N++    +I          D  L  +PL HV  L    
Sbjct: 4   PALIQYTSGTTGRPKGAMLTHRNVLNNGYSI-ARRLGLTEGDRTLVPVPLFHVFGLVL-G 61

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV-SVL------KPTLMAAVPAIFDRVREG 389
           ++      +  G+TL + +         K D  + L      + T +  VP +F  +   
Sbjct: 62  VLAS----LTAGATLVLME---------KFDPGAALRLIERERITALHGVPTMFIAL--- 105

Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
                                               LE   +D     S+R         
Sbjct: 106 ------------------------------------LEHPDFDKFDLSSLR--------T 121

Query: 450 MICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDP---SVGRVGPPVPC 505
            I GGAP+  +  R I      A I   YG+TET    T +  DDP     G VG P+P 
Sbjct: 122 GISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPG 181

Query: 506 CYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562
             +K+V   +GG       +P    GEI V G++V  GY+N+P  T+E    D  G  W 
Sbjct: 182 VEVKIVD-PDGG------EVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDAD--G--WL 230

Query: 563 YTGDIGQVYPDGCLEIIDRKKDIVK 587
           +TGD+G +  DG L I+ R KD++ 
Sbjct: 231 HTGDLGYMDEDGYLRIVGRIKDMII 255

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  143 bits (364), Expect = 6e-37
 Identities = 107/455 (23%), Positives = 167/455 (36%), Gaps = 93/455 (20%)

Query: 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL 216
              I+  + V   +A           V +  + GE+ L  +  +  + T+I     L+KL
Sbjct: 33  NIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVITSRAFLEKL 92

Query: 217 SAV-SSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV------SSFSEVEKLGKRSPVDP 269
                  L     ++Y E+        +   IS          +           +   P
Sbjct: 93  KLEGLVVLLEGVRIVYLED--------LRAKISKADKLKAFLAAKLPPALLRLFLAGAKP 144

Query: 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV 329
             P     AVI++TSGS GLPKGV+++H N++A    I  +I      DV L  LPL H 
Sbjct: 145 DDP-----AVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVID-LNTEDVLLGALPLFHA 198

Query: 330 LELAAESIM-LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388
             L    ++ L  G  + Y          +++       +   K T++   P        
Sbjct: 199 FGLTVTLLLPLLTGLRVVYYPNPLDAKKIAEL-------IRDYKATILCGTPTFLR---- 247

Query: 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR 448
                              GY R                        F S+R V      
Sbjct: 248 -------------------GYARN------------------AHPEDFSSLRLV------ 264

Query: 449 FMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCY 507
             + G   L     + F     G  I + YG TE     + +       G VG P+P   
Sbjct: 265 --VAGAEKLPEATRELFEEKF-GIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIE 321

Query: 508 IKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYT 564
           +++VS +      + + +P GE   ++V G NV +GY NN  KTSEV  + +    W+ T
Sbjct: 322 VRIVSPE------THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDG---WYDT 372

Query: 565 GDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
           GDIG++  DG L I+ R K   K+  GE +SL  +
Sbjct: 373 GDIGKIDEDGFLTIVGRLKRFAKIG-GEMVSLTAV 406

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  137 bits (347), Expect = 9e-36
 Identities = 97/325 (29%), Positives = 137/325 (42%), Gaps = 93/325 (28%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
            A+I+YTSG+TG PKGVM+TH N++A A        +    DVYL   PL H       +
Sbjct: 3   PALILYTSGTTGRPKGVMLTHRNLLANAVNA-LAGVDLSPGDVYLLAAPLYHA------A 55

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD-VSVL------KPTLMAAVPAIFDRVREG 389
             L    A+  G T+ +           K D  +VL      + T    VP +F      
Sbjct: 56  GGLFLLPALAAGGTVVLMP---------KFDPEAVLDLIERHRVTHTFLVPTMF------ 100

Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
                                +RL  +              +      S+R         
Sbjct: 101 ---------------------QRLLRLPD------------FARYDLSSLR--------L 119

Query: 450 MICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP-----SVGRVGPPVP 504
           +I G AP+ A+ +R +    G    Q YG+TET   +T    +D      SVGR   PVP
Sbjct: 120 IIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGR---PVP 176

Query: 505 CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
              +++V  DE G     + +P    GEIVV G  V AGY+N P  T+E  +    G  W
Sbjct: 177 GVEVRIV--DEDG-----RELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR---DG--W 224

Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIV 586
            +TGD+G +  DG L I+DRKKD++
Sbjct: 225 LHTGDLGYLDEDGYLYIVDRKKDMI 249

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  136 bits (343), Expect = 2e-33
 Identities = 129/551 (23%), Positives = 225/551 (40%), Gaps = 127/551 (23%)

Query: 132 TYGEVFDRACSFASGLVNF-GHNVDTRA-------------AILAETCVEWFIAFQGCFR 177
           TYG  F +  SF+  L  + G  +  +               +     + W +A   C  
Sbjct: 93  TYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACML 152

Query: 178 QSITVVTIYSSLGEDALIHSLNETQ----------VTTLICDSKQ---LKKLSAVSSSLK 224
             +T + ++S    D ++  LNET+          V  L+    +   LKKL  + + +K
Sbjct: 153 SGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIK 212

Query: 225 TIKNVIYFE--NDGSE-KDSGVSGGISNWTVSSFS-------------EVEKL------- 261
           + +  I  E  N+GS   ++G          +  S             + EKL       
Sbjct: 213 SKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLK 272

Query: 262 ------------------GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
                              K +         + +  I+YTSG++G PKGVM+++ N+   
Sbjct: 273 EKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNL--- 329

Query: 304 AAAIKTLIP----------NPGRSDVYLAYLPLAHVLE--LAAESIMLCAGCAIGYGSTL 351
                T++P          NP     +L+YLP++H+ E  +A  S ML        G T+
Sbjct: 330 ---YNTVVPLCKHSIFKKYNP---KTHLSYLPISHIYERVIAYLSFML--------GGTI 375

Query: 352 TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE----KGGLTKNLFNI 407
              +  SK       D+   K  ++A VP +F+R+   ++ ++      K  L K + ++
Sbjct: 376 ---NIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSL 432

Query: 408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI 467
              R+  +     F  + LE +     +   ++  +   +  ++ GG  LS      +++
Sbjct: 433 ---RK--SNNNGGFSKF-LEGITH---ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSV 483

Query: 468 CMGAPIGQAYGLTETCAGSTF----SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDK 523
            +     Q YGLTET  G  F     + +  S+G  GP  P    K+ +W+   YK +D 
Sbjct: 484 LLNVNYYQGYGLTET-TGPIFVQHADDNNTESIG--GPISPNTKYKVRTWET--YKATDT 538

Query: 524 PMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKK 583
             P+GE+++   ++ +GYF    +T   +  D     +F TGDI Q+  +G L  +DR K
Sbjct: 539 L-PKGELLIKSDSIFSGYFLEKEQTKNAFTEDG----YFKTGDIVQINKNGSLTFLDRSK 593

Query: 584 DIVKLQHGEYI 594
            +VKL  GEYI
Sbjct: 594 GLVKLSQGEYI 604

Length = 746

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  125 bits (315), Expect = 2e-30
 Identities = 116/501 (23%), Positives = 190/501 (37%), Gaps = 113/501 (22%)

Query: 122 KLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT 181
           +   G     TY + + R    A+ L + G     R A LA         +         
Sbjct: 17  RTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAV 76

Query: 182 VVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241
           + T+   L  + + + +N  +   +  D   L  L A++  L T+K V+ +++    + S
Sbjct: 77  LHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETS 136

Query: 242 GVSGGISNWTVSSFSEVEKLGKRSPVD--PSLPSQNGVAVIMYTSGSTGLPKGVMITHGN 299
                     V ++ E+  L + SP    P L  +N  A + YTSG+TG PKGV+ +H +
Sbjct: 137 LP-------NVYAYEEL--LEEESPEYEWPELD-ENTAAGLCYTSGTTGNPKGVVYSHRS 186

Query: 300 IV--ATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTS 357
           +V    A+A+   +     SD  L  +P+ HV               + Y +T+      
Sbjct: 187 LVLHTLASALPDSL-GLSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAK-- 232

Query: 358 SKIKKGTKGDVSVL-------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYK 410
             +  G   D + L       K T+ A VP I+               GL   L      
Sbjct: 233 -LVLPGRYLDPASLLDLIEEEKVTVSAGVPTIW--------------LGLLNYL------ 271

Query: 411 RRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470
                                     ++    L    R ++ G A   +  ++      G
Sbjct: 272 --------------------------EANGKDLSSLRRVVVGGSALPRSLIEKLEE--RG 303

Query: 471 APIGQAYGLTETCAGSTFS-------EWDDPSVGRV----GPPVPCCYIKLVSWDEGGYK 519
             +  A+G+TET    T S       +  +     +    G PVP   +++V  D+ G  
Sbjct: 304 VEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIV--DDEG-- 359

Query: 520 TSDKPMPR-----GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
                +P      GE+VV G  VT  Y+ +P KT E+      G  WF TGD+  +  DG
Sbjct: 360 ---NELPWDGKTVGELVVRGPWVTGSYYKDPEKTEEL---TRDG--WFRTGDVAVIDEDG 411

Query: 575 CLEIIDRKKDIVKLQHGEYIS 595
            ++I DR KD++K   GE+IS
Sbjct: 412 YIQITDRAKDVIK-SGGEWIS 431

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  122 bits (308), Expect = 7e-30
 Identities = 89/314 (28%), Positives = 130/314 (41%), Gaps = 64/314 (20%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
            A+I+YTSG+TG PKGV++THGN+ A A A+         SDV L  LPL HV       
Sbjct: 90  PALIIYTSGTTGRPKGVVLTHGNLAANARALVEAW-RWTASDVLLHALPLHHV-----HG 143

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP-TLMAAVPAIFDRVREGVVKKVE 395
           +     C +  G+++       +     +  + +L   T+   VP I             
Sbjct: 144 LFNALHCPLWAGASVEFL---PRFDPQERDALRLLPRITVFMGVPTI------------- 187

Query: 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGA 455
                        Y R L   E                  F    A     +R  + G A
Sbjct: 188 -------------YTRLLEHYE------------------FDDAAAAAARNLRLFVSGSA 216

Query: 456 PLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWD 514
            L     +R+     G  + + YG+TET    +     +   G VG P+P   +++V  +
Sbjct: 217 ALPVPVLERWEER-TGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVD-E 274

Query: 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
           +GG   +   +  GEI V G NV + Y+N P  T+E +   E G  WF TGD+G V  DG
Sbjct: 275 DGGEPLAAGEV--GEIQVRGPNVFSEYWNKPEATAEAF--TEDG--WFKTGDVGVVDEDG 328

Query: 575 CLEIIDRKK-DIVK 587
              I+ RK  DI+K
Sbjct: 329 YYRILGRKSDDIIK 342

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  119 bits (301), Expect = 5e-29
 Identities = 102/485 (21%), Positives = 168/485 (34%), Gaps = 108/485 (22%)

Query: 132 TYGEVFDRACSFASGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
           TY E+ +RA   A  L   G      R A+L E   E  +A     +     V +  +  
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60

Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
            + L   L +     L+ DS                          + + +G+   +   
Sbjct: 61  AERLAFILEDAGARLLLTDS------------------------ALASRLAGLVLPVILL 96

Query: 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
                + ++      P D +    + +A ++YTSGSTG PKGV++TH ++V   A +   
Sbjct: 97  DPLELAALDDAPAPPPPD-APSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155

Query: 311 IPNPGRSDVYLAYLPLAH---VLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
                  D  L +  L+    V E+      L AG      + +   +   +        
Sbjct: 156 YGLDPD-DRVLQFASLSFDASVEEIFGA---LLAG-----ATLVVPPEDEERDDAALLAA 206

Query: 368 V-SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGL 426
           + +    T++   P++   +                                        
Sbjct: 207 LIAEHPVTVLNLTPSLLALL---------------------------------------- 226

Query: 427 ERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGS 486
                      S+R V+       + G A   A   R+     GA +   YG TET   S
Sbjct: 227 --AAALPPALASLRLVI-------LGGEALTPALVDRWRARGPGARLINLYGPTETTVWS 277

Query: 487 TFSEWDDPSVGR-----VGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVT 538
           T +  D     R     +G P+    + ++  D+       +P+P    GE+ +GG  V 
Sbjct: 278 TATLVDPDDAPRESPVPIGRPLANTRLYVL--DDDL-----RPVPVGVVGELYIGGPGVA 330

Query: 539 AGYFNNPGKTSEVYKVD----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
            GY N P  T+E +  D      G   + TGD+ +  PDG LE + R  D VK+  G  I
Sbjct: 331 RGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRI 389

Query: 595 SLGKI 599
            LG+I
Sbjct: 390 ELGEI 394

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  119 bits (300), Expect = 3e-28
 Identities = 89/339 (26%), Positives = 135/339 (39%), Gaps = 85/339 (25%)

Query: 261 LGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD-V 319
            G  S V    P+ + VA+I+YTSG+TG PKG  +TH N+ A AA  K  +P  G     
Sbjct: 205 GGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPER 264

Query: 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTS------SKIKKGTKGDVSVLKP 373
            LA LP+ H     A  + LC   A+  G  L +            +KK          P
Sbjct: 265 VLAALPMFH-----AYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHP--------P 311

Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
           T +  VP ++++    + +  EE+G                                   
Sbjct: 312 TWLPGVPPLYEK----IAEAAEERG----------------------------------- 332

Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC---AGSTFSE 490
           +            +R    G   L   +        G  + + YGLTET     G+  S 
Sbjct: 333 VDLSG--------VRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMS- 383

Query: 491 WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGK 547
            DD   G VG P P   +++V  +       D+ MP    GE++V G  V  GY+N P +
Sbjct: 384 -DDRRPGYVGVPFPDTEVRIVDPE-----DPDETMPDGEEGELLVRGPQVFKGYWNRPEE 437

Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
           T++ +        WF TGD+  +  DG + I+DR K+++
Sbjct: 438 TAKSFLDG-----WFRTGDVVVMEEDGFIRIVDRIKELI 471

Length = 573

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  116 bits (294), Expect = 9e-28
 Identities = 115/478 (24%), Positives = 179/478 (37%), Gaps = 132/478 (27%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
            + +  T+ E+ +   S A  L   G     R A+L +  +E  +      +     V +
Sbjct: 24  EEKKV-TFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLL 82

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
            + L  + L+  L++ +V  LI D     KL    S                        
Sbjct: 83  NTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISVK---------------------- 120

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN--IVAT 303
                    F+E+    K           + VA IMYTSG+TG PKGV+ T+GN    A 
Sbjct: 121 ---------FAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAV 171

Query: 304 AAAIKTLIPNPGRS--DVYLAYLPLAHV--LELAAESIMLCAGCAIGYGSTLTMTDT--S 357
            +A+     N G +  D +LA +P+ H+  L +   S++        YG  + + +   +
Sbjct: 172 GSAL-----NLGLTEDDCWLAAVPIFHISGLSILMRSVI--------YGMRVVLVEKFDA 218

Query: 358 SKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVE 417
            KI K  +        T+++ V  +                                   
Sbjct: 219 EKINKLLQTG----GVTIISVVSTM----------------------------------- 239

Query: 418 GSWFGAWGLERMLWDAIVFKSVRAVLGGR-----IRFMICGGAPLSADSQRFINICM--G 470
                   L+R+L            LG        R M+ GG P        +  C   G
Sbjct: 240 --------LQRLL----------ERLGEGTYPSSFRCMLLGGGPAPKP---LLEQCKEKG 278

Query: 471 APIGQAYGLTETCAG-STFS-EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG 528
            P+ Q+YG+TET +   T S E     +G  G P+  C +K+    +G       P   G
Sbjct: 279 IPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIE--KDG---VVVPPFEEG 333

Query: 529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
           EIVV G NVT GY N    T E +   + G  WF TGDIG +  +G L ++DR+ D++
Sbjct: 334 EIVVKGPNVTKGYLNREDATRETF---QDG--WFKTGDIGYLDEEGFLYVLDRRSDLI 386

Length = 483

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  116 bits (292), Expect = 2e-27
 Identities = 59/235 (25%), Positives = 93/235 (39%), Gaps = 22/235 (9%)

Query: 111 FVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170
            + A  G +            T+ ++  +A   A GL   G       A+++   +E+  
Sbjct: 2   LIDADTGTEL-----------TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPP 50

Query: 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI 230
            F GC      V     S   D L H L  ++   + CD  +L K+   +  L  +  +I
Sbjct: 51  VFLGCLAAGGIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRII 110

Query: 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
             ++       GV            +E E       +D      +  A ++Y+SG+TGLP
Sbjct: 111 VLDS----APDGVLRIEDLLEPRLGAEDEFR-PTPLIDGK----DDTAALLYSSGTTGLP 161

Query: 291 KGVMITHGNIVATAA-AIKTLIPNP-GRSDVYLAYLPLAHVLELAAESIMLCAGC 343
           KGVM++H NI+A  +    TL  NP   +DV L +LP  H   L      L  G 
Sbjct: 162 KGVMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGA 216

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  111 bits (281), Expect = 4e-26
 Identities = 57/144 (39%), Positives = 73/144 (50%), Gaps = 8/144 (5%)

Query: 447 IRFMICGGAPLSADSQ-RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
           +R +  G APLS + Q           I Q YG+TET   +T +   D   G VG  VP 
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPN 324

Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
              K+V  DE G   S  P  RGE+ V G  +  GY NNP  T E   +DE G  W +TG
Sbjct: 325 VEAKIV--DEDG-GKSLGPNERGELCVKGPQIMKGYLNNPEATKET--IDEDG--WLHTG 377

Query: 566 DIGQVYPDGCLEIIDRKKDIVKLQ 589
           DIG    DG   I+DRKK+++K +
Sbjct: 378 DIGYFDEDGNFYIVDRKKELIKYK 401

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  108 bits (272), Expect = 2e-25
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 86/315 (27%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
            A I++TSGSTG PK V+ T GN +A+A      +      D +L  LPL HV  LA   
Sbjct: 79  PATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG-LTPDDNWLLSLPLFHVSGLA--- 134

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396
           I++     +  G  L + D     +   +  +     T ++ VP                
Sbjct: 135 IVM--RSLL-AGGALVLPD-KFDAEAIAE-ALENHGVTHISLVPTQ-------------- 175

Query: 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML--WDAIVFKSVRAVLGGRIRFMICGG 454
                                        L+R+L    A    S+RAVL         GG
Sbjct: 176 -----------------------------LQRLLESLGARWLSSLRAVL--------LGG 198

Query: 455 APLSADSQRFINIC--MGAPIGQAYGLTETCAGSTFSEWDDP--SVGRVGPPVPCCYIKL 510
           AP+       +      G P+   YG+TET +     + DD    +G VG P+P   +++
Sbjct: 199 APIPPS---LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRI 255

Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
           V+  +            GEI+V G ++  GY    G T     +DE G  WF+TGD+G +
Sbjct: 256 VNPQD------------GEILVRGPSLFLGYLPQGGLTPP---LDEDG--WFHTGDLGYL 298

Query: 571 YPDGCLEIIDRKKDI 585
             +G L ++ R+ D+
Sbjct: 299 DAEGYLYVLGRRDDL 313

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  107 bits (269), Expect = 2e-24
 Identities = 122/475 (25%), Positives = 190/475 (40%), Gaps = 88/475 (18%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+    D+   FA+ L   G     R AI+   C +  I + G       VV       E
Sbjct: 51  TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT--------------IKNVIYFENDGS 237
             L + L+++    ++C      +++ V S+ K                KN++Y      
Sbjct: 111 RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKK 170

Query: 238 EKDSGVSGGISNWTVSSFSEVEK---LGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
           + +  V    S  T+  ++ VEK    G   P DP    +N +A++ YT G+TG PKGVM
Sbjct: 171 QSNLVVKVSESE-TIHLWNSVEKEVNTGVEVPCDP----ENDLALLQYTGGTTGFPKGVM 225

Query: 295 ITHGNIVA-TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM 353
           +TH N+V+ T   ++ L       +V L  LP  HV                 YG T  M
Sbjct: 226 LTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHV-----------------YGMTAVM 268

Query: 354 TDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRL 413
                        ++S+++   M  +P  FD                 K +F    K ++
Sbjct: 269 -------------NLSIMQGYKMVLIPK-FD----------------MKMVFEAIKKHKV 298

Query: 414 AAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473
               G    A  +   L ++ + K         IR  I G APL  + Q       G  +
Sbjct: 299 TLFPG----APTIYIALLNSPLLKEYDI---SSIRACISGSAPLPVEVQEKFETVTGGKL 351

Query: 474 GQAYGLTET--CAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIV 531
            + YGLTE+     S F  W+    G +G P P     ++S + G    +  P   GEIV
Sbjct: 352 VEGYGLTESSPVTHSNFL-WEKRVPGSIGVPWPDTEAMIMSLETG---EALPPGEIGEIV 407

Query: 532 VGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
           V G  +  GY+N P +T+ V +       W +TGD+G +  DG   + DRKKD++
Sbjct: 408 VKGPQIMKGYWNKPEETAAVLQDG-----WLHTGDVGYMDEDGFFYVKDRKKDMI 457

Length = 563

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score =  106 bits (268), Expect = 3e-24
 Identities = 103/465 (22%), Positives = 161/465 (34%), Gaps = 112/465 (24%)

Query: 129 EWQ--TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI- 185
           EW+  TY E   +  + A  L++ G + +    IL+   +E  +         + V  + 
Sbjct: 22  EWRRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVS 81

Query: 186 --YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN--------D 235
             YS L +D                      KL  +   L      ++ E+         
Sbjct: 82  PAYSLLSKD--------------------FAKLRHIFDLLT--PGAVFAEDGAAFARALA 119

Query: 236 GSEKDSG---VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG--VAVIMYTSGSTGLP 290
                        G       +F+ +      + VD +  +     VA  ++TSGSTGLP
Sbjct: 120 ALGLAGVPVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLP 179

Query: 291 KGVMITHGNIVATAAAIKTLIPNPGRSD-VYLAYLPLAHVLELAAESIMLCAGCAIGYGS 349
           K V+ TH  + A  A I    P       V + +LP  H                +  G 
Sbjct: 180 KAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTF--GGNHNF---NMVLYNGG 234

Query: 350 TLTMTD---TSSKIKKGTKG--DVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404
           TL + D        ++  +   +VS   PT+   VP  F+ +    V  +E    L +  
Sbjct: 235 TLYIDDGKPVPGLFEETLRNLREVS---PTVYFNVPKGFEML----VDALERDAALRRRF 287

Query: 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464
           F     +RL  +   ++    L + +WD +   +VR   G RI                 
Sbjct: 288 F-----KRLRLL---FYAGAALPQDVWDRLQALAVRTT-GERIPMT-------------- 324

Query: 465 INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP 524
                        G TET   +TF  W     G +G P P   +KLV             
Sbjct: 325 ----------SGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLV------------- 361

Query: 525 MPRG---EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566
            P G   E+ V G NVT GY+ +P  T+E +  DE G  ++  GD
Sbjct: 362 -PNGGKLEVRVKGPNVTPGYWRDPELTAEAF--DEEG--FYRIGD 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  103 bits (260), Expect = 5e-24
 Identities = 78/314 (24%), Positives = 120/314 (38%), Gaps = 61/314 (19%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYLAYLPLAHVLELAAE 335
           +A   +T G+TG PK    +H N VA A     L    PG  DV L  LPL HV      
Sbjct: 4   LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPG--DVLLNGLPLFHVGGAIVT 61

Query: 336 SIM-LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394
            +  L  G  +   +     + +  +       V   + TL++AVP +            
Sbjct: 62  GLAPLARGATVVLPTPSGFRNPA--VVANFWKIVERYRVTLLSAVPTV------------ 107

Query: 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454
                             LAA+         L+  L DA +           +R+ + G 
Sbjct: 108 ------------------LAAL---------LQVPLGDADISS---------LRYALTGA 131

Query: 455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSW 513
           APL  +  R      G P+ + YG+TE    S  +        G VG  +P   +++   
Sbjct: 132 APLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKL 191

Query: 514 DEGGYKTSD-KPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP 572
           D GG    D  P   G + + G NV  GY N     +   ++++    W  TGD+G++  
Sbjct: 192 DAGGALGRDCAPGEVGVLAIRGPNVFPGYLN--DAHNAGARLEDG---WLNTGDLGRIDA 246

Query: 573 DGCLEIIDRKKDIV 586
           DG L +  R KD++
Sbjct: 247 DGYLWLTGRAKDLI 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  104 bits (262), Expect = 6e-24
 Identities = 99/480 (20%), Positives = 175/480 (36%), Gaps = 118/480 (24%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ ++   A   A  L   G    +R A++ +  +E  +    C      +  + + L E
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           +   + L +  V  L+ DS                      E    + DS          
Sbjct: 61  NERTNQLEDLDVQLLLTDSL--------------------LEEKDFQADS---------- 90

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQ---NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
                 ++++      + SL +    + +A +M+TSG+TG PK V  T  N  A+A   K
Sbjct: 91  ------LDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSK 144

Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
             +      D +L  LPL H+  L+   +       +  G+TL + D  +++ +    + 
Sbjct: 145 ENLGF-TEDDNWLLSLPLYHISGLSI--LFRW----LIEGATLRIVDKFNQLLEMIANE- 196

Query: 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
              + T ++ VP                                             L R
Sbjct: 197 ---RVTHISLVPTQ-------------------------------------------LNR 210

Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGS-T 487
           +L +    +++R +L G        G+ + A          G PI  +YG+TETC+   T
Sbjct: 211 LLDEGGHNENLRKILLG--------GSAIPAPLIE-EAQQYGLPIYLSYGMTETCSQVTT 261

Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
            +     +   VG P+    IK+           D     GEI+V G N+  GY      
Sbjct: 262 ATPEMLHARPDVGRPLAGREIKI---------KVDNKEGHGEIMVKGANLMKGYLYQ--- 309

Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLP 607
                  +++G  WF TGDIG++  +G L ++ R+ D++ +  GE I   +I +     P
Sbjct: 310 GELTPAFEQQG--WFNTGDIGELDGEGFLYVLGRRDDLI-ISGGENIYPEEIETVLYQHP 366

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  105 bits (262), Expect = 1e-23
 Identities = 100/484 (20%), Positives = 160/484 (33%), Gaps = 103/484 (21%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
              +  TY E+  RA   A  L++ G       AILA+  +E  +A     +     V +
Sbjct: 248 RGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPL 307

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
                 + L + L +++ T L+  +     L      L      +  ++  SE       
Sbjct: 308 DPLYPAERLAYILEDSRPTLLLTQAH----LRVDDVGL----PGLALDDALSEIPDTD-- 357

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
                               P+  +L     +A I+YTSGSTG PKGV I H  +     
Sbjct: 358 --------------------PIPQALLGDA-LAYIIYTSGSTGQPKGVRIEHRALANLLN 396

Query: 306 AIKTLIPNPGRSDVYLAYLPL---AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362
                       D  LA   L   A V E+      L  G  +     L   D ++    
Sbjct: 397 DAGARFGLDAD-DRVLALASLSFDASVFEIFG---ALLEGARLVLAPALLQVDPAA---- 448

Query: 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG 422
                +     T++  VP                                          
Sbjct: 449 -LLELLEAQGITVLLLVPL----------------------------------------- 466

Query: 423 AWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD--SQRFINICMGAPIGQAYGLT 480
              L R+L  A +   + +    R+R ++ GG  L      +      +   +   YG T
Sbjct: 467 ---LLRLLLLAALAPDLISPCE-RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPT 522

Query: 481 ETCAGSTFSEWDDPSVGRV--GPPVPCCYIKLVSWDEGGYKTSDKPM-PRGEIVVGGFNV 537
           E    +           RV  G PV    + ++  D+G       P+   GE+ + G  +
Sbjct: 523 EATLDAPSFPISAELESRVPIGRPVANTQLYIL--DQGL---RPLPLGVPGELYIAGLGL 577

Query: 538 TAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597
             GY N P  T+E +         + TGD+ +   DG LE + RK   VK++ G  I LG
Sbjct: 578 ALGYLNRPDLTAERFIALR----LYRTGDLARPLADGALEYLGRKDSQVKIR-GFRIELG 632

Query: 598 KIPS 601
           +I +
Sbjct: 633 EIEA 636

Length = 642

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  101 bits (255), Expect = 9e-23
 Identities = 94/478 (19%), Positives = 153/478 (32%), Gaps = 105/478 (21%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
              E  TYG++       A+ L + G     R AI      E  IA     R       +
Sbjct: 37  LFREL-TYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVV 95

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSS---SLKTIKNVIYFENDGSEKDSG 242
              L  +A+   + +     LI D    +    ++    +   + +V+     G   D  
Sbjct: 96  SPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEA 155

Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI-V 301
           V         S   E E L      DP          ++YTSG+TG PKG++ +HG   V
Sbjct: 156 VE------KASEKFEFEPL---PADDP--------LFLLYTSGTTGKPKGIVHSHGGYLV 198

Query: 302 ATAAAIKT---LIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAIGY-GSTLTMTD 355
                 K    L+P     D +        +  L  +  S +      + Y G      +
Sbjct: 199 EHRLTAKFHGDLLPG----DRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPE 254

Query: 356 TSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR-EGVVKKVEEKGGLTKNLFNIGYKRRLA 414
              +        +   K T+    P    R+   G+ +                      
Sbjct: 255 RLWEA-------LEKYKVTIFGTSPTFLRRLMKLGLGEP--------------------- 286

Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474
                           +D     S+R +           G PL+ ++  +    +G  I 
Sbjct: 287 ----------------YD---LSSLRVLG--------SAGEPLNPEAFEWFYSALGVWIL 319

Query: 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP--RGEIVV 532
             YG TET  G   +       G  G P+P     +   D+ G      P+P   GE+VV
Sbjct: 320 DIYGQTETGMG-FIAGRPPVKNGSSGLPLPG--YAVRRVDDEG-----NPVPPGVGELVV 371

Query: 533 GGFN--VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588
                 +   Y+N+P +  E Y        W+ TGD  +   DG   +  R  D++K+
Sbjct: 372 RLPWPGMALTYWNDPERYKEAYFGR-----WYRTGDWAERDEDGYFWLHGRSDDVIKV 424

Length = 528

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score =  101 bits (253), Expect = 1e-22
 Identities = 99/383 (25%), Positives = 146/383 (38%), Gaps = 123/383 (32%)

Query: 266 PVDPSLP------------------SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
           P+DPS P                    + +A ++YTSGSTG PKGV ++H  +V    ++
Sbjct: 66  PLDPSYPAERLQYMLEDAEPALLLTDPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSM 125

Query: 308 KTLIPNPGRSDVYLAYLPLA---HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364
               P  G SD  LA   ++    VLEL    +          G+T+ +          T
Sbjct: 126 ARR-PGLGASDRLLAVTTISFDISVLELLLPLL---------SGATVVIASAE------T 169

Query: 365 KGDVSVL-------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVE 417
             D   L       + T+M A PA                                    
Sbjct: 170 VRDPERLARLIADERITIMQATPA------------------------------------ 193

Query: 418 GSWFGAWGLERML----WDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAP 472
            +W       RML    W     +S+ A         +CGG  L  D ++R ++   GA 
Sbjct: 194 -TW-------RMLLAAGWRGR--ESLTA---------LCGGEALPRDLAERLLS--TGAE 232

Query: 473 IGQAYGLTETCAGSTFS--EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR--- 527
           +   YG TET   ST +     D  V  +G P+    + ++  DE       +P+P    
Sbjct: 233 LWNMYGPTETTIWSTCARVTAADGPV-TIGRPIANTQVYVL--DEDL-----QPVPPGVP 284

Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVD---ERGMCWFYTGDIGQVYPDGCLEIIDRKKD 584
           GE+ +GG  V  GY   P  T+E +  D   + G   + TGD+ +  PDG LE + R  D
Sbjct: 285 GELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADD 344

Query: 585 IVKLQHGEYISLGKIPSTTTVLP 607
            VK+  G  I LG+I +     P
Sbjct: 345 QVKI-RGFRIELGEIEAALRAHP 366

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score =  100 bits (252), Expect = 2e-22
 Identities = 92/348 (26%), Positives = 138/348 (39%), Gaps = 101/348 (29%)

Query: 278 AVIMYTSGSTGLPKGVMITHGNIVA-TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
           A I ++SGSTG PKGV++TH N++    A I+         DV+L+++PL H + L    
Sbjct: 109 AFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEIT--SEDVFLSWMPLTHDMGL---- 162

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396
                   IG+  T T    +  +          +   L    P ++       + K  +
Sbjct: 163 --------IGFHLTPTALGINQYL----------MPTRLFIRRPLLW-------LDKASQ 197

Query: 397 -KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGA 455
            +  +  +  N GYK  L   +      W L           SVR         +I  GA
Sbjct: 198 HRATILSSP-NFGYKYLLKHFKTEKIIDWDL----------SSVR---------LIFNGA 237

Query: 456 -PLSAD-SQRFINICMGAPIGQA-------YGLTETCAGSTFSEWDDP----SVGR---- 498
            P+SAD  + F+     AP G         YGL E     +F +  +P     + R    
Sbjct: 238 EPISADLCEEFLEKM--APFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLK 295

Query: 499 --------------------VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT 538
                               VG P+  C I++V  D+ G    D+ +  G I + G NVT
Sbjct: 296 VGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIV--DDAGEVLPDRTI--GHIQIKGDNVT 351

Query: 539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
           +GY+NNP  T +    D     W  TGD+G +  +G L I  R KDI+
Sbjct: 352 SGYYNNPEATKKSITPDG----WLKTGDLGFLR-NGRLVITGRAKDII 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  100 bits (251), Expect = 3e-22
 Identities = 116/492 (23%), Positives = 186/492 (37%), Gaps = 117/492 (23%)

Query: 132 TYGEVFDRACSFASGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
           TY E       FA+ L+         R A++   C+++ IA  G  R  +TVV +     
Sbjct: 52  TYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYT 111

Query: 191 EDALIHSLNETQVTTLI-----CDSKQ---------------------LKKLSAVSSSLK 224
              L H L ++  + L+       + Q                       K + V+  +K
Sbjct: 112 PRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVK 171

Query: 225 TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTS 284
            +K ++         +  ++G I       F E   LG++  +       + +A + YT 
Sbjct: 172 YVKKLV--------PEYRINGAIR------FREALALGRKHSMPTLQIEPDDIAFLQYTG 217

Query: 285 GSTGLPKGVMITHGNIVATAAAIKTLIPNPGR----SDVYLAYLPLAHVLELAAESI--M 338
           G+TG+ KG M+TH N+VA        +   G+     +V +  LPL H+  L A  +  M
Sbjct: 218 GTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFM 277

Query: 339 LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398
              GC     +   M            G V  LK T   A   +                
Sbjct: 278 KIGGCNHLISNPRDM-----------PGFVKELKKTRFTAFTGV---------------- 310

Query: 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLS 458
                LFN      L    G            +D I F S++  LGG       G A   
Sbjct: 311 ---NTLFN-----GLLNTPG------------FDQIDFSSLKMTLGG-------GMAVQR 343

Query: 459 ADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-GRVGPPVPCCYIKLVSWDEGG 517
           + ++R+  +  G  + +AYGLTET   +  +        G +G P+P       S D   
Sbjct: 344 SVAERWKQV-TGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIP-------STDACI 395

Query: 518 YKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
              +   +  GEI    + G  V  GY+  P +T++V  +D  G  W +TGDI ++   G
Sbjct: 396 KDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKV--MDADG--WLHTGDIARMDEQG 451

Query: 575 CLEIIDRKKDIV 586
            + I+DRKKD++
Sbjct: 452 FVYIVDRKKDMI 463

Length = 560

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 98.4 bits (246), Expect = 2e-21
 Identities = 103/464 (22%), Positives = 172/464 (37%), Gaps = 105/464 (22%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVT 184
           G +   TY E  +R  + A  L++ G + +    IL+   +E   +A        +    
Sbjct: 65  GGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLAL-AAMYAGVPYAP 123

Query: 185 I---YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG----- 236
           +   YS + +D                      KL  V   L+ +   + F +DG     
Sbjct: 124 VSPAYSLVSQD--------------------FGKLRHV---LELLTPGLVFADDGAAFAR 160

Query: 237 ---SEKDSGV-----SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG--VAVIMYTSGS 286
              +   + V      G +     + F+ +      + VD +  +     +A  ++TSGS
Sbjct: 161 ALAAVVPADVEVVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGS 220

Query: 287 TGLPKGVMITHGNIVATAAAIKTLIPNPGRSD-VYLAYLPLAHVLELAAESIMLCAGCAI 345
           TGLPK V+ TH  + A    +    P       V + +LP  H         +   G  +
Sbjct: 221 TGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTF--GGNHNL---GIVL 275

Query: 346 GYGSTLTMTD---TSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTK 402
             G TL + D   T     + T  ++  + PT+   VP  +    E +V  +E    L +
Sbjct: 276 YNGGTLYIDDGKPTPGGFDE-TLRNLREISPTVYFNVPKGW----EMLVPALERDAALRR 330

Query: 403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQ 462
             F        + ++  ++    L + +WD +  +   A  G RIR M            
Sbjct: 331 RFF--------SRLKLLFYAGAALSQDVWDRL-DRVAEATCGERIRMM------------ 369

Query: 463 RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSD 522
                          G+TET   +TF+       G +G P P C +KLV    GG     
Sbjct: 370 ------------TGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLV--PVGG----- 410

Query: 523 KPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566
               + E+ V G NVT GY+  P  T+E +  DE G  ++ +GD
Sbjct: 411 ----KLEVRVKGPNVTPGYWRAPELTAEAF--DEEG--YYRSGD 446

Length = 614

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 97.2 bits (242), Expect = 3e-21
 Identities = 123/470 (26%), Positives = 186/470 (39%), Gaps = 87/470 (18%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY  + +R  + ASGL   G     R AI  +  +E   A  G        V I   L  
Sbjct: 27  TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           + + H L +  V  L+  S++L  L         ++ +I          S    G     
Sbjct: 87  EQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIV--GDPAHASEGHPGEE--- 141

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
            +S+ ++  LG   P  P + S   +A I+YTSGSTG PKGV+++H N+VA A ++ T +
Sbjct: 142 PASWPKLLALGDADPPHPVIDSD--MAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL 199

Query: 312 PN-PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVS 369
            N P   D  LA LPL                 +  YG + LT             G   
Sbjct: 200 ENRPD--DRLLAVLPL-----------------SFDYGFNQLTTAFYV--------GATV 232

Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM 429
           VL   L+          R+ V+K +E K G+T           LAAV   W     L ++
Sbjct: 233 VLHDYLL---------PRD-VLKALE-KHGITG----------LAAVPPLWAQ---LAQL 268

Query: 430 LWDAIVFKSVR--AVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
            W      S+R     GG +       A LS       N    A +   YGLTE    ST
Sbjct: 269 DWPESAAPSLRYLTNSGGAMP-----RATLSRLRSFLPN----ARLFLMYGLTEAFR-ST 318

Query: 488 F--SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
           +   E  D     +G  +P   + LV  ++G      +    GE+V  G  V  GY+N+P
Sbjct: 319 YLPPEEVDRRPDSIGKAIPNAEV-LVLREDGSECAPGEE---GELVHRGALVAMGYWNDP 374

Query: 546 GKTSEVYKVDER--------GMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
            KT+E ++             +   ++GD  +   +G L  + R+ +++K
Sbjct: 375 EKTAERFRPLPPFPGELHLPELA-VWSGDTVRRDEEGFLYFVGRRDEMIK 423

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 96.1 bits (239), Expect = 7e-21
 Identities = 111/476 (23%), Positives = 183/476 (38%), Gaps = 99/476 (20%)

Query: 125 LGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVV 183
           + + E  TY ++ +     A+ L+         R AIL++  +E+ +      +     V
Sbjct: 22  ITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81

Query: 184 TIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGV 243
            +   L E+ LI  L ++  T L  +    K    ++ S++              K S V
Sbjct: 82  PLNIRLTENELIFQLKDSGTTVLFVE----KTFQNMALSMQ--------------KVSYV 123

Query: 244 SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
              IS   ++S  E+E    R   +    +++   +I YTSG+TG PKG ++T  N+   
Sbjct: 124 QRVIS---ITSLKEIED---RKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWN 177

Query: 304 AAAIKTLIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAIGYGSTLTMTDTSSKIK 361
           A    T   +    D  +  LPL H+  + L A   +  AG  I        T   S I+
Sbjct: 178 ALN-NTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLF-AGGVIIVPRKFEPTKALSMIE 235

Query: 362 KGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWF 421
           K         K T++  VP I   +              T NL ++              
Sbjct: 236 KH--------KVTVVMGVPTIHQALINCSKF-------ETTNLQSV-------------- 266

Query: 422 GAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLT 480
                 R  ++                    GGAP   +  + FI+   G   GQ +G+T
Sbjct: 267 ------RWFYN--------------------GGAPCPEELMREFID--RGFLFGQGFGMT 298

Query: 481 ETCAGSTFSEWDDPS--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT 538
           ET         +D    VG +G PV  C  +L+  ++       +    GE+++ G NV 
Sbjct: 299 ETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKV----EVGEVGELLIRGPNVM 354

Query: 539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
             Y+N P  T E  +       W  TGD+ +V  DG + I+ RKK+++ +  GE I
Sbjct: 355 KEYWNRPDATEETIQDG-----WLCTGDLARVDEDGFVYIVGRKKEMI-ISGGENI 404

Length = 496

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 94.5 bits (235), Expect = 3e-20
 Identities = 98/340 (28%), Positives = 135/340 (39%), Gaps = 79/340 (23%)

Query: 261 LGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI----KTLIPNPGR 316
                 V   +  Q+ VA IMY+SG+TG  KGV++TH N++A          +    PG 
Sbjct: 184 KEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGS 243

Query: 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT---DTSSKIKKGTKGDVS---V 370
            +VYLA LP+ H+  L+   + L     +  GST+ +    D S  +K   +  V+   V
Sbjct: 244 DNVYLAALPMFHIYGLSLFVVGL-----LSLGSTIVVMRRFDASDMVKVIDRFKVTHFPV 298

Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
           + P LMA            + KK +   G                               
Sbjct: 299 VPPILMA------------LTKKAKGVCGE------------------------------ 316

Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGST-- 487
               V KS++ V         CG APLS    Q F+         Q YG+TE+ A  T  
Sbjct: 317 ----VLKSLKQV--------SCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRG 364

Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
           F+         VG   P    K+V W  G       P   GE+ + G  V  GY NNP  
Sbjct: 365 FNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLL---PPGNCGELWIQGPGVMKGYLNNPKA 421

Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           T     +D+ G  W  TGDI     DG L I+DR K+I+K
Sbjct: 422 TQS--TIDKDG--WLRTGDIAYFDEDGYLYIVDRLKEIIK 457

Length = 560

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 91.5 bits (228), Expect = 3e-19
 Identities = 51/201 (25%), Positives = 78/201 (38%), Gaps = 29/201 (14%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIY----S 187
           TY E+  RA + A+ L   G   D R  +LA   +++  AF GC       V        
Sbjct: 25  TYAELDRRARAIAARLQALGAPGD-RVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83

Query: 188 SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI 247
                 L   L +     ++  S  L  L A  ++   +  ++   +D +   +      
Sbjct: 84  GRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAALAAA----- 138

Query: 248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
                                P     + +A + YTSGSTG PKGVM+THGN++A   AI
Sbjct: 139 -----------------DWRPPPPDP-DDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAI 180

Query: 308 KTLIPNPGRSDVYLAYLPLAH 328
                     DV +++LPL H
Sbjct: 181 ARAFG-LDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 91.7 bits (228), Expect = 3e-19
 Identities = 97/344 (28%), Positives = 143/344 (41%), Gaps = 81/344 (23%)

Query: 254 SFSEVEKLGKRSP-VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT---AAAIKT 309
           SF      G+R   V P L     +A + YT G+TG+ KG M+TH N++A    A A   
Sbjct: 185 SFRSALHKGRRMQYVKPEL-VPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYG 243

Query: 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369
            + +PG+  V  A LPL H+  L    ++                     I+ G +    
Sbjct: 244 PLLHPGKELVVTA-LPLYHIFALTVNCLLF--------------------IELGGQN--- 279

Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEG--SWFGAWGLE 427
                L+   P    R   G VK+++              K    A+ G  + F A  L 
Sbjct: 280 -----LLITNP----RDIPGFVKELK--------------KYPFTAITGVNTLFNAL-LN 315

Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE-----T 482
              +  + F S++  +GG       G A   A ++R++ +  G  + + YGLTE     +
Sbjct: 316 NEEFQELDFSSLKLSVGG-------GMAVQQAVAERWVKL-TGQYLLEGYGLTECSPLVS 367

Query: 483 CAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542
                   +     G +G PVP   IKLV  D+G      +P   GE+ V G  V  GY+
Sbjct: 368 VNPYDLDYYS----GSIGLPVPSTEIKLVD-DDGNEVPPGEP---GELWVKGPQVMLGYW 419

Query: 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
             P  T EV K    G  W  TGDI  +  +G L I+DRKKD++
Sbjct: 420 QRPEATDEVIK---DG--WLATGDIAVMDEEGFLRIVDRKKDMI 458

Length = 560

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 87.3 bits (217), Expect = 1e-18
 Identities = 55/160 (34%), Positives = 79/160 (49%), Gaps = 21/160 (13%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV---GRVGPP 502
           R+RF+    APL       +    G P+ +AYG+TE  A    S    P V   G VG P
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEA-AHQIASNPLPPLVRKPGSVGRP 177

Query: 503 VPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
                + ++  D+ G     +P+P    GEIV+ G NVTAGY NNP    E ++      
Sbjct: 178 A-GVEVAIL--DDDG-----RPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDG---- 225

Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
            WF TGD+G +  DG L +  R K+++  + GE IS  ++
Sbjct: 226 -WFRTGDLGYLDEDGYLFLTGRIKELIN-RGGEKISPREV 263

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 88.0 bits (219), Expect = 3e-18
 Identities = 55/202 (27%), Positives = 84/202 (41%), Gaps = 18/202 (8%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVV---TIYSS 188
           TY E+  R    A+ L   G     R AI A     W IA  G  +    VV   T Y++
Sbjct: 32  TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91

Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
             E A I  L       L      L    + ++ L  +++V+  E +  +  +       
Sbjct: 92  -DEAAYI--LARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMK--- 145

Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
                +F++    G  +   P +   + VA I++TSG+TG PKG M+TH  +++ AA   
Sbjct: 146 -----TFTDFLAAGDPAERAPEVDPDD-VADILFTSGTTGRPKGAMLTHRQLLSNAADWA 199

Query: 309 TLIP-NPGRSDVYLAYLPLAHV 329
             +    G  D YLA  P  HV
Sbjct: 200 EYLGLTEG--DRYLAANPFFHV 219

Length = 513

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 87.5 bits (217), Expect = 4e-18
 Identities = 92/355 (25%), Positives = 133/355 (37%), Gaps = 80/355 (22%)

Query: 253 SSFSEVEKLGKRSPVDPSLP---SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309
           +SF   E L +R+     L    + +   +I +TSG+TG PKGV I+H  ++  + A K 
Sbjct: 147 NSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLA-KI 205

Query: 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG-CAIGYGSTLTMTDTSSKIKKGTKGDV 368
            I   G  DVYL   PL H+  L++   ML  G C +     L   D  + ++   + +V
Sbjct: 206 AIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHV----LLPKFDAKAALQAIKQHNV 261

Query: 369 SVLKPTLMAAVPAIF-DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
                T M  VPA+  D +                          L     +W       
Sbjct: 262 -----TSMITVPAMMADLI-------------------------SLTRKSMTWKV----- 286

Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
                   F SVR +L G       GG+  S        +   A +  AYG+TE C+  T
Sbjct: 287 --------FPSVRKILNG-------GGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLT 331

Query: 488 FSEWDDPSV---------------GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV 532
           F    DP++                 V  P   C  K     E      D+    G I+ 
Sbjct: 332 FMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIG-LDESSRVGRILT 390

Query: 533 GGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
            G +V  GY+    +T+ V   D     W  TGDIG +   G L +I R  D +K
Sbjct: 391 RGPHVMLGYWGQNSETASVLSND----GWLDTGDIGWIDKAGNLWLIGRSNDRIK 441

Length = 563

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 86.9 bits (216), Expect = 5e-18
 Identities = 77/314 (24%), Positives = 124/314 (39%), Gaps = 68/314 (21%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGN--IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA 334
           VA+   + G+TGLPK +  TH +    A A+A    + +PG   VYLA LP AH   L++
Sbjct: 141 VALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGL-DPG--TVYLAVLPAAHNFTLSS 197

Query: 335 ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394
             ++     A+  G T+ +                   P+   A P I    RE V    
Sbjct: 198 PGLL----GALLAGGTVVLHHP----------------PSPDVAFPLI---EREKVT--- 231

Query: 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454
                               A+  +    W LE   WD     S+R +          GG
Sbjct: 232 ------------------HTALVPALLNLW-LEAAEWDQADLSSLRVIQ--------VGG 264

Query: 455 APLSADSQRFINICMGAPIGQAYGLTE-TCAGSTFSEWDDPSVGRVGPPV-PCCYIKLVS 512
           APLS +  R +   +G P+ Q +G+ E     +   +  D  +   G P+ P   I++V 
Sbjct: 265 APLSPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPISPADEIRIV- 323

Query: 513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP 572
            D+ G       +  GE++  G     GY+  P   +  +  D     ++ TGD+ ++  
Sbjct: 324 -DDQGEPVPPGEV--GELLTRGPYTIRGYYRAPEHNARAFTDD----GFYRTGDLVRIDA 376

Query: 573 DGCLEIIDRKKDIV 586
           DG   ++ R KD +
Sbjct: 377 DGYYRVVGRIKDQI 390

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 86.9 bits (216), Expect = 7e-18
 Identities = 118/498 (23%), Positives = 177/498 (35%), Gaps = 107/498 (21%)

Query: 127 DYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIY 186
            Y+  ++ E+  R+ + A GL   G     RA ++    +E+F      F+     V + 
Sbjct: 38  AYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVD 97

Query: 187 SSLGEDALIHSLNETQVTTLICDSK-QLKK--LSAVSSSLKTIKNVIYFENDGSEKDSGV 243
             +G   L   L E Q    I   K  L +        S++ +  V              
Sbjct: 98  PGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTV-------------- 143

Query: 244 SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
            GG   W  ++ + + + G  +P   +  + + +A I++TSGSTG PKGV+ THG   A 
Sbjct: 144 -GGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQ 202

Query: 304 AAAIKTLIP-NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362
             A++      PG  D  L   PL  +   A                 L MT        
Sbjct: 203 IEALREDYGIEPGEID--LPTFPLFALFGPA-----------------LGMT-------- 235

Query: 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLF-NIGYKRRLAAVEGSWF 421
                 SV+ P +    PA  D  +  +   +E  G    NLF +     RL        
Sbjct: 236 ------SVI-PDMDPTRPATVDPAK--LFAAIERYG--VTNLFGSPALLERL-------- 276

Query: 422 GAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICM-GAPIGQAYGL 479
           G +G        I   S+R V        I  GAP+     +RF  +    A I   YG 
Sbjct: 277 GRYGEAN----GIKLPSLRRV--------ISAGAPVPIAVIERFRAMLPPDAEILTPYGA 324

Query: 480 TE-----TCAGST--FSEWDDPSVGR---VGPPVPCCYIKLV--------SWDEGGYKTS 521
           TE     +       F+       G    VG PV    ++++         WD+      
Sbjct: 325 TEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDD------ 378

Query: 522 DKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEI 578
              +     GEIVV G  VT  Y+N P  T      D +G  W   GD+G +   G L  
Sbjct: 379 ALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWF 438

Query: 579 IDRKKDIVKLQHGEYISL 596
             RK   V+   G   ++
Sbjct: 439 CGRKAHRVETAGGTLYTI 456

Length = 552

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 85.8 bits (213), Expect = 2e-17
 Identities = 60/193 (31%), Positives = 85/193 (44%), Gaps = 37/193 (19%)

Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFS----EWD 492
           ++ +  L   +R M  G  P  A  ++     +G  +   YGLTET    T      EWD
Sbjct: 274 EADKLPLPRPVRVMTAGAPPPPAVIKKMEE--LGFEVTHVYGLTETYGPITVCEWKPEWD 331

Query: 493 DPSVG-------RVG-PPVPCCYIKLVSWDEGGYKTSDKPMPR-----GEIVVGGFNVTA 539
                       R G   V    + +V  D      + K +PR     GEIV+ G  V  
Sbjct: 332 ALPAEERARLKARQGVRYVGLEEVDVV--DP----ETMKDVPRDGKTIGEIVMRGNTVMK 385

Query: 540 GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
           GY+ NP  T E +     G  WF++GD+  V+PDG +EI DR KDI+       IS G+ 
Sbjct: 386 GYYKNPEATEEAFA---GG--WFHSGDLAVVHPDGYIEIKDRSKDII-------ISGGEN 433

Query: 600 PSTTTVLPLLFHH 612
            S+  V  +L+ H
Sbjct: 434 ISSIEVEGVLYKH 446

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 83.0 bits (206), Expect = 8e-17
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 20/161 (12%)

Query: 445 GRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV--GRVGP 501
             +R  +CGGAP+  + ++R     +GA + +AYG+TE    +  +  D         G 
Sbjct: 208 PSLRVFLCGGAPVPRELARRAAEA-LGAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGR 266

Query: 502 PVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558
           PVP   +++V  D+         +P    GE+ V G  +  GY + P  T       + G
Sbjct: 267 PVPGVEVRIV--DD-----DGNDVPPGEEGELQVRGPQLFLGYLDPPDNTEAF---TDDG 316

Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
             WF TGD+G++  DG L I  RKKDI+ ++ GE IS  +I
Sbjct: 317 --WFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREI 354

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 82.9 bits (205), Expect = 2e-16
 Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
            ++  + GG  L   +        G  I + YG+TET    + +      VG +G PVP 
Sbjct: 327 ALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPS 386

Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
              K++  D+G      +    GE+ V G  V  GY+  P  T E+  +D  G  W  TG
Sbjct: 387 TLCKVID-DDGNELPLGEV---GELCVKGPQVMKGYWQRPEATDEI--LDSDG--WLKTG 438

Query: 566 DIGQVYPDGCLEIIDRKKDIV 586
           DI  +  DG + I+DRKKD++
Sbjct: 439 DIALIQEDGYMRIVDRKKDMI 459

Length = 562

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 82.0 bits (203), Expect = 3e-16
 Identities = 118/567 (20%), Positives = 194/567 (34%), Gaps = 154/567 (27%)

Query: 44  RKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGK 103
           R    K   + VE   +    I++               ++  L  +     P   +L +
Sbjct: 17  RPLNWKPPDISVERRADGSIVIKSRHPLGP------YPRSIPHLLAKWAAEAPDRPWLAQ 70

Query: 104 RKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAE 163
           R+             ++ K+        TYGE      + A  L++ G +      IL+ 
Sbjct: 71  RE---------PGHGQWRKV--------TYGEAKRAVDALAQALLDLGLDPGRPVMILSG 113

Query: 164 TCVEWFIAFQGCFRQSITVVTI---YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS 220
             +E  +      +  +    +   YS +  D   H+              +LK L  + 
Sbjct: 114 NSIEHALMTLAAMQAGVPAAPVSPAYSLMSHD---HA--------------KLKHLFDL- 155

Query: 221 SSLKTIKNVIYFENDGSEKDSG-------------VSGGISNWTVSSFSEVEKLGKRSPV 267
                +K  + F   G+                  V+G        +F+++      + V
Sbjct: 156 -----VKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFADLAATPPTAAV 210

Query: 268 DPSLP--SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI---PNPGRSDVYLA 322
             ++   + + VA  ++TSGSTG+PK V+ T   + A  A  + L    P+P    V L 
Sbjct: 211 AAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPP-VSLD 269

Query: 323 YLPLAHVLELAAESIMLCAGCAIGY------GSTLTMTD---TSSKIKKGTKG--DVSVL 371
           ++P  H             G    +      G TL + D        ++  +   ++S  
Sbjct: 270 WMPWNH-----------TMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREIS-- 316

Query: 372 KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLW 431
            PT+   VPA +  + E + K    +    KNL  + Y            G   L   L+
Sbjct: 317 -PTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAY------------GGATLSDDLY 363

Query: 432 DAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEW 491
           + +   +VR   G RI F                           YG TET   +T + W
Sbjct: 364 ERMQALAVRTT-GHRIPFY------------------------TGYGATETAPTTTGTHW 398

Query: 492 DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKT 548
           D   VG +G P+P   +KL               P G   E+ V G NVT GY  +P  T
Sbjct: 399 DTERVGLIGLPLPGVELKLA--------------PVGDKYEVRVKGPNVTPGYHKDPELT 444

Query: 549 SEVYKVDERGMCWFY-TGDIGQ-VYPD 573
           +  +  DE G   FY  GD  + V PD
Sbjct: 445 AAAF--DEEG---FYRLGDAARFVDPD 466

Length = 624

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 81.1 bits (201), Expect = 4e-16
 Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 15/145 (10%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-GRVGPPVP 504
            +R  I G APL A++ R      G  I + YG+TET   +T + +D     G VG P+P
Sbjct: 270 HMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNM-NTSNPYDGERRAGTVGFPLP 328

Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
              +++   + G        +P GE   I V G NV  GY+  P KT+E ++ D  G  +
Sbjct: 329 GVSLRVTDPETG------AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRAD--G--F 378

Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIV 586
           F TGD+G++   G + I+ R KD++
Sbjct: 379 FITGDLGKIDERGYVHIVGRGKDLI 403

Length = 504

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 80.1 bits (198), Expect = 7e-16
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 10/139 (7%)

Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
            GGA L       +    G    + YGLTET   + F+  D P    +G PV     +++
Sbjct: 206 GGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVI 265

Query: 512 SWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIG 568
             + G      + +P    GEIVV G  V  GY+N P  T+E +   + G  +F TGD+G
Sbjct: 266 DPETG------EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELD-GKRFFRTGDLG 318

Query: 569 QVYPDGCLEIIDRKKDIVK 587
            +  +G    +DR K ++ 
Sbjct: 319 YIDEEGYFFFLDRVKRMIN 337

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 12/136 (8%)

Query: 453 GGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS-VGRVGPPVPCCYIKLV 511
           G A + A ++R+  +  G  I + YGLTET   ++ + + + + +G VG PVP   +K++
Sbjct: 342 GTALVKATAERWEQL-TGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVI 400

Query: 512 SWDEGGYKTSDKPM-PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
             D+G    ++ P+  RGE+ + G  V  GY+  P  T+E   +D  G  WF TGDI  +
Sbjct: 401 D-DDG----NELPLGERGELCIKGPQVMKGYWQQPEATAEA--LDAEG--WFKTGDIAVI 451

Query: 571 YPDGCLEIIDRKKDIV 586
            PDG + I+DRKKD++
Sbjct: 452 DPDGFVRIVDRKKDLI 467

Length = 562

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 78.4 bits (194), Expect = 3e-15
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 17/117 (14%)

Query: 476 AYGLTETCAGSTFSEWDDPSV---GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GE 529
            YGL+E    +TF+  DD      G +G  +     K+V  +E G     + +P    GE
Sbjct: 313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIV--NELG-----EEVPVGEVGE 365

Query: 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
           ++V G NV  GY+++P  T+     D     W +TGD+G++  +G L I+DRKKD+ 
Sbjct: 366 LLVRGPNVMKGYYDDPEATAAAIDADG----WLHTGDLGRLDEEGYLYIVDRKKDMF 418

Length = 513

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 76.2 bits (188), Expect = 2e-14
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 18/177 (10%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TYGE+ +    + + L   G   + R  ++     E+  AF G  +     V I + L  
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           D   + LN+++   L+   +  + L         +++VI            V GG     
Sbjct: 92  DDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVI------------VVGGAGPGA 139

Query: 252 VSSFSEVEKLGKRSPVD--PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306
             S+++   L   +  +   +  S + +A  +Y+SGSTG PKGV+  H +++ TA A
Sbjct: 140 -LSYAQ---LIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEA 192

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 76.4 bits (189), Expect = 2e-14
 Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 22/120 (18%)

Query: 476 AYGLTETCAGSTFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-- 527
           AYG+TET   ST +  DDP      +VGR  P +    +K+V  + G      + +PR  
Sbjct: 347 AYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLE---VKIVDPETG------ETVPRGE 397

Query: 528 -GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
            GE+   G++V  GY+N+P KT+E   +D  G  W +TGD+  +  +G + I+ R KD++
Sbjct: 398 QGELCTRGYSVMKGYWNDPEKTAEA--IDADG--WMHTGDLAVMDEEGYVNIVGRIKDMI 453

Length = 559

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 76.2 bits (187), Expect = 2e-14
 Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 14/138 (10%)

Query: 453 GGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-GRVGPPVPCCYIKLV 511
           GGAPL  +   F     G  +   +G+TETC+  T    + P   G +G  +P   + +V
Sbjct: 320 GGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVV 379

Query: 512 SWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIG 568
           S D+       K +P GE   + + G NVT GY+N P +++E + V +R    F TGDIG
Sbjct: 380 SLDD-----PTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAF-VGDR----FLTGDIG 429

Query: 569 QVYPDGCLEIIDRKKDIV 586
            +  DG   ++DRKKD++
Sbjct: 430 YMDTDGYFFLVDRKKDMI 447

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 74.5 bits (184), Expect = 4e-14
 Identities = 54/160 (33%), Positives = 72/160 (45%), Gaps = 19/160 (11%)

Query: 449 FMICG----GAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGR-----V 499
           F+ CG         A  +RF N    A I   YG TE     T  E     + R     +
Sbjct: 219 FLFCGEVLPKKLAKALRRRFPN----ARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPI 274

Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
           G P P     ++  DE G      P   GE+V+ G  V+ GY NNP KT++ +  DE G 
Sbjct: 275 GYPKPGLRALIL--DEDG--RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDE-GQ 329

Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
            W+ TGD+  +  DG L  + RK   +KL HG  I L +I
Sbjct: 330 RWYRTGDLVYLEDDGLLVYLGRKDFQIKL-HGYRIELEEI 368

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 74.1 bits (183), Expect = 5e-14
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 32/161 (19%)

Query: 446 RIRFMICGGAPLSADSQ-----RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVG 500
            +RF    GAPL A        RF     G  + + YG+TET      +  D    G  G
Sbjct: 197 PLRF--VFGAPLPAAIWPAFEERF-----GVKLVEGYGMTETGVP-IIAPGDPAPPGSCG 248

Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVV---GGFNVTAGYFNNPGKTSEVYKV 554
            P P   +++V  DE       + +P    GE+VV     + +  GY+  P  T++ +  
Sbjct: 249 RPRPGVEVRIV--DED-----GREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-- 299

Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595
             R   WF+TGD G+   DG L  +DRKKD ++ + GE IS
Sbjct: 300 --RNG-WFHTGDRGRRDEDGFLYFVDRKKDAIRRR-GENIS 336

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 74.2 bits (183), Expect = 6e-14
 Identities = 109/465 (23%), Positives = 165/465 (35%), Gaps = 128/465 (27%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           +Y +++      A  L   G     R A+  +  ++W IA   C +  I  + I      
Sbjct: 4   SYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSA 60

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
               H LN+     LI D       SA+ +   T+   +Y                    
Sbjct: 61  QQTQHLLNDAGADLLISDDPDA--ASALHTPFATLGEDLYIAL----------------- 101

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
                      + S     LP+  G A I YTSGSTG PKGV ++   +   A ++   I
Sbjct: 102 -----------RPSANPVELPA--GTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAI 148

Query: 312 PNPGRSDVYLAYLPLAHVLE-LAAESIMLCAG--CAIGYGSTLTMTDTSSKIKKGTKGDV 368
                 + +L  LPLA +LE +A     L  G    +   + L ++ +S          +
Sbjct: 149 -AILEPERHLCLLPLATLLENIAGVYAPLLMGATVILVPLAELGLSGSSGLDPAQFVAAL 207

Query: 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
           S  +P  +  VP                   L   L        +AAVE       G   
Sbjct: 208 SRWQPHSLILVPQ------------------LLMAL--------VAAVEQ------GPLP 235

Query: 429 MLWDAIVFKSVR--AVLGGRIRFMICGGAPL--SADSQRFINICMGAPIGQAYGLTETCA 484
                   +S+R  AV G R+         L   A +       +G P+ + YGL+E CA
Sbjct: 236 -------PESLRFVAVGGARV------SPSLLQRARA-------LGLPVYEGYGLSE-CA 274

Query: 485 GSTFS----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG 540
            S  S      D P  G VG P+P   + +                 GEI+V G ++  G
Sbjct: 275 -SVVSLNTPGADRP--GSVGKPLPHVQVSIA--------------NDGEILVRG-SLMLG 316

Query: 541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDI 585
           Y   P  T +          W+ TGD+G +  +G L I  RKK++
Sbjct: 317 YLGEPPATDD----------WWATGDLGHLDEEGYLYINGRKKNL 351

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 74.6 bits (184), Expect = 6e-14
 Identities = 57/228 (25%), Positives = 86/228 (37%), Gaps = 28/228 (12%)

Query: 110 DFVTASDGRKFEK--LHLGDYEWQTYGEVFDRACS-FASGLVNFGHNVDTRAAILAETCV 166
           D +  S  R  +K  L  GD  W TY E  D A +  A+ L++ G     R A L     
Sbjct: 15  DILRRSARRYPDKTALVFGDRSW-TYAE-LDAAVNRVAAALLDLGLKKGDRVAALGHNSD 72

Query: 167 EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI 226
            + + +  C R     V +   L  + L + L+ +     + D        A  + L   
Sbjct: 73  AYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP-- 130

Query: 227 KNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGS 286
             V               GG   W    F++  + G  +  D  L   + +A I+YTSG+
Sbjct: 131 --VDTLILSLVLGGREAPGG---WL--DFADWAEAGSVAEPDVELADDD-LAQILYTSGT 182

Query: 287 TGLPKGVMITHGNIVA------TAAAIKTLIPNPGRSDVYLAYLPLAH 328
             LPKG M+TH  ++A       A  +          D+ L  LPL H
Sbjct: 183 ESLPKGAMLTHRALIAEYVSCIVAGDMSA-------DDIPLHALPLYH 223

Length = 523

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 74.2 bits (182), Expect = 6e-14
 Identities = 61/201 (30%), Positives = 89/201 (44%), Gaps = 42/201 (20%)

Query: 413 LAAVE-----GSWFGAWGLERMLW----DAIVFKSVRAVLGG-------RIRFMICGGAP 456
           LAA+E      +W     L R+L     D     S+   +GG       RIR        
Sbjct: 231 LAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIR-------- 282

Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWD 514
                  F  +   A    AYGLTETC+G T  E   +   +G  G  +    I++    
Sbjct: 283 ------DFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-G 335

Query: 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
            G +     P  +GEI + G  VT GY+ +P KT+E +  D     WF +GD+G +  +G
Sbjct: 336 AGRWLP---PNMKGEICMRGPKVTKGYWKDPEKTAEAFYGD-----WFRSGDVGYLDEEG 387

Query: 575 CLEIIDRKKDIVKLQHGEYIS 595
            L + DRKKD++ +  GE I+
Sbjct: 388 FLYLTDRKKDMI-ISGGENIA 407

Length = 497

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 74.6 bits (184), Expect = 6e-14
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 448 RFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS-VGRVGPPVPCC 506
           R+ +CG APL  +  R      G  I + YGLTE    S+ +  D    +G VG  +P  
Sbjct: 336 RYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395

Query: 507 YIKLVSWDEGGYKTSDKPMPR-GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
            +++V  D+ G    D  +   G + + G NV +GY         ++ +++    W  TG
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLE-AAHNKGLW-LEDG---WLNTG 450

Query: 566 DIGQVYPDGCLEIIDRKKDIV 586
           D+G++  DG   +  R KD++
Sbjct: 451 DLGRIDADGYFWLTGRAKDLI 471

Length = 632

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 73.4 bits (181), Expect = 1e-13
 Identities = 56/181 (30%), Positives = 77/181 (42%), Gaps = 41/181 (22%)

Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTET------CAGSTFSE 490
              RA +   +  M+ G AP +A   +     +G  +   YGLTET      CA     E
Sbjct: 289 AEWRAGIDHPVHAMVAGAAPPAAVIAKMEE--IGFDLTHVYGLTETYGPATVCAWQ--PE 344

Query: 491 WDDPSV-------GRVGPPVPCCYIKLVSWDEGGYKTSD----KPMPR-----GEIVVGG 534
           WD   +        R G   P          + G    D    +P+P      GEI+  G
Sbjct: 345 WDALPLDERAQLKARQGVRYPL---------QEGVTVLDPDTMQPVPADGETIGEIMFRG 395

Query: 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
             V  GY  NP  T E +     G  WF+TGD+  ++PDG ++I DR KDI+ +  GE I
Sbjct: 396 NIVMKGYLKNPKATEEAF---AGG--WFHTGDLAVLHPDGYIKIKDRSKDII-ISGGENI 449

Query: 595 S 595
           S
Sbjct: 450 S 450

Length = 545

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 73.0 bits (180), Expect = 3e-13
 Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 11/106 (10%)

Query: 497  GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYK 553
            G VG P+P   +++V  +        + +P GE   I++GG  V  GY  +P KT+EV K
Sbjct: 960  GSVGMPLPGVAVRIVDPETF------EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIK 1013

Query: 554  VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
             D  G+ W+ TGD G +  DG L I DR     K+  GE + LG +
Sbjct: 1014 -DIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAV 1057

Length = 1146

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 72.6 bits (179), Expect = 3e-13
 Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 9/166 (5%)

Query: 181 TVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSA--VSSSLKTIKNVIYFENDGSE 238
             V +  +  E AL  ++ + Q+ T+I   K L+KL        L     VIY E D   
Sbjct: 691 VPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLE-DLKA 749

Query: 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
           K S V   ++    +       L +              A I+++SGS G PKGVM++H 
Sbjct: 750 KISKVDK-LTALLAARLLPARLLKRLYGPTFKPDD---TATIIFSSGSEGEPKGVMLSHH 805

Query: 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM-LCAGC 343
           NI++    I  +  N    DV L+ LP  H   L     + L  G 
Sbjct: 806 NILSNIEQISDVF-NLRNDDVILSSLPFFHSFGLTVTLWLPLLEGI 850

Length = 1146

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 71.9 bits (176), Expect = 4e-13
 Identities = 84/355 (23%), Positives = 129/355 (36%), Gaps = 99/355 (27%)

Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITH----GNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327
           PS + V  ++YTSG+TG PKGVM T      NI   A  ++      G  DV L   P+A
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLEL-----GGGDVILMASPMA 246

Query: 328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT----LMAAVPAIF 383
           H         M      +   +T  + D  +  +        +++ T     MA+ P + 
Sbjct: 247 HQ-----TGFMYGLMMPLILNATAVLQDIWNPARA-----AELIRETGVTFTMASTPFLT 296

Query: 384 DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVL 443
           D  R      V+E G    +LF                                      
Sbjct: 297 DLCR-----AVKESGAPVPSLFT------------------------------------- 314

Query: 444 GGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP---SVGRVG 500
                  +C GAP+           +GA I  A+G+TE     T +E DD    +    G
Sbjct: 315 ------FLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEPDDALEKASTTDG 367

Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKTSEVYKVDER 557
            P+P   +K++  +          + +GE    +V G +   GY   P   S     D  
Sbjct: 368 RPLPGVEVKVIDAN-------GAKLSQGETGRLLVRGCSNFGGYLKRPHLNS----TDAE 416

Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI-------PSTTTV 605
           G  WF TGD+     +G + I  R KD++ ++ GE I + +I       P+   V
Sbjct: 417 G--WFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQV 468

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 71.5 bits (176), Expect = 4e-13
 Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 31/169 (18%)

Query: 446 RIRFMICGGAPLSAD-------SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGR 498
            +R +I GG              +R +N          YG TE    +T S         
Sbjct: 209 SLRTLILGGEACPQALVDRWSKPRRLLN---------TYGPTEATVTATASRLTPGKPVN 259

Query: 499 VGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVD 555
           +G P+P     ++          +  +P    GE+ +GG  V  GY N P  T+E +  D
Sbjct: 260 IGRPLPNYTCWVLD------PDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPD 313

Query: 556 -----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
                  G   + TGD+ +   DG LE + RK D VK+  G+ I LG+I
Sbjct: 314 PFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKI-RGQRIELGEI 361

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 71.7 bits (176), Expect = 4e-13
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 44/258 (17%)

Query: 78  WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
           + G +++A  ++Q+ ++ P            K  V  + G  +           TY  + 
Sbjct: 19  YWGDASLADYWQQTARAMPD-----------KIAVVDNHGASY-----------TYSALD 56

Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
             A   A+ L+  G     R A       E+ I +  C +     V +  S  E  L+  
Sbjct: 57  HAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWV 116

Query: 198 LNETQVTTLIC-----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV 252
           LN+ Q            ++ +  +  + + L  ++ ++  +                   
Sbjct: 117 LNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPA-------------T 163

Query: 253 SSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTL 310
           SS S  + +    P+  ++    + +A +++TSG+ GLPKGVM+TH NI+A+  A    L
Sbjct: 164 SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL 223

Query: 311 IPNPGRSDVYLAYLPLAH 328
             N    DV++   PL H
Sbjct: 224 --NLTWQDVFMMPAPLGH 239

Length = 547

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 71.3 bits (176), Expect = 5e-13
 Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 32/161 (19%)

Query: 446 RIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTF-------SEWDDPSVG 497
            +R +I GG  L A+  +R+  +  GA +  AYG TET    T+        +     +G
Sbjct: 209 SLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIG 268

Query: 498 RVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKV 554
           R   P+    + ++  DE       +P+P    GE+ +GG  V  GY N P  T+E +  
Sbjct: 269 R---PIANTRVYVL--DEDL-----RPVPVGVPGELYIGGAGVARGYLNRPELTAERFVP 318

Query: 555 D------ERGMCWFY-TGDIGQVYPDGCLEIIDRKKDIVKL 588
           D      ER     Y TGD+ +  PDG LE + R  D VK+
Sbjct: 319 DPFGGPGER----LYRTGDLARWLPDGNLEFLGRADDQVKI 355

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 70.6 bits (173), Expect = 9e-13
 Identities = 61/182 (33%), Positives = 81/182 (44%), Gaps = 35/182 (19%)

Query: 447 IRFMICGGAP----LSADSQRFINICMGAPIGQAYGLTETCAGSTF----SEWDDPSV-- 496
           +  M  G AP    L A S++      G  +   YGL+ET   ST      EWD      
Sbjct: 313 VHVMTAGAAPPPSVLFAMSEK------GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEE 366

Query: 497 -GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-----GEIVVGGFNVTAGYFNNPGKTSE 550
             R+       YI L   D    KT  KP+P      GEIV+ G  V  GY  NP    E
Sbjct: 367 QARLNARQGVRYIGLEGLDVVDTKTM-KPVPADGKTMGEIVMRGNMVMKGYLKNPKANEE 425

Query: 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLF 610
            +     G  WF++GD+G  +PDG +EI DR KDI+       IS G+  S+  V  +++
Sbjct: 426 AF---ANG--WFHSGDLGVKHPDGYIEIKDRSKDII-------ISGGENISSLEVENVVY 473

Query: 611 HH 612
            H
Sbjct: 474 TH 475

Length = 567

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 30/160 (18%)

Query: 447 IRFMICGGAPLSAD-----SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP---SVGR 498
           +RF +CGG  +         QR I +         YG TE+         DDP    +  
Sbjct: 304 LRFFLCGGTTIPKKVARECQQRGIKLL------SVYGSTESSP-HAVVNLDDPLSRFMHT 356

Query: 499 VGPPVPCCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKTSEVYKVD 555
            G       IK+V  DE     + K +P G   E    G NV  GY + P  T+    +D
Sbjct: 357 DGYAAAGVEIKVV--DE-----ARKTLPPGCEGEEASRGPNVFMGYLDEPELTARA--LD 407

Query: 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595
           E G  W+Y+GD+ ++   G ++I  RKKDI+ ++ GE IS
Sbjct: 408 EEG--WYYSGDLCRMDEAGYIKITGRKKDII-VRGGENIS 444

Length = 547

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 70.8 bits (174), Expect = 1e-12
 Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)

Query: 132 TYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
           +Y E+ + A   A  L    G     R  +  +   ++ IA+    R +  VV +     
Sbjct: 37  SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96

Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI------YFENDGSEK----- 239
           E+ L H + ++     I  S+   K++    +L  +++VI      Y   +         
Sbjct: 97  EEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWL 155

Query: 240 ------DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGV 293
                  +   GG+  W        E L       P     + +AV+ YTSG+TG+PKG 
Sbjct: 156 RAEPPLQALAPGGVVAWK-------EALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGC 208

Query: 294 MITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVL 330
           M TH  ++A A     L  N     V LA LPL HV 
Sbjct: 209 MHTHRTVMANAVG-SVLWSNSTPESVVLAVLPLFHVT 244

Length = 546

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 71.1 bits (174), Expect = 1e-12
 Identities = 98/492 (19%), Positives = 161/492 (32%), Gaps = 110/492 (22%)

Query: 132  TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
            +Y E+  RA   A  L   G   + R AI AE   E  +A     +     V +  +   
Sbjct: 2030 SYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPA 2089

Query: 192  DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
            + L + L ++    L+     L++L                          +  G++   
Sbjct: 2090 ERLAYMLEDSGAALLLTQRHLLERLP-------------------------LPAGVARLP 2124

Query: 252  VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG----NIVATAAAI 307
            +   +E       +P    L  +N +A ++YTSGSTGLPKGV ++HG    +  A     
Sbjct: 2125 LDRDAEWADYPDTAP-AVQLAGEN-LAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY 2182

Query: 308  KTLIPNPGRSDVYLAYLPLAHVLELAAESIM--LCAGCAIGYGSTLTMTDTSSKIKKGTK 365
            +        +D  L ++  +   + A E     L  G        + + D      +   
Sbjct: 2183 EL-----SPADCELQFMSFS--FDGAHEQWFHPLLNGAR------VLIRDDELWDPEQLY 2229

Query: 366  GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
             ++     T++   P    ++ E       E+ G    +      R         FG   
Sbjct: 2230 DEMERHGVTILDFPPVYLQQLAE-----HAERDGRPPAV------RVYC------FGG-- 2270

Query: 426  LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
                  +A+   S+R                         N          YG TE    
Sbjct: 2271 ------EAVPAASLRLAWEA-------------LRPVYLFN---------GYGPTEAVVT 2302

Query: 486  STF--SEWDDPSVGRVGPPVPCCYIKLVSWDEGGY--KTSDKPMPR---GEIVVGGFNVT 538
                     DP  G    P     I     +   Y        +     GE+ +GG  + 
Sbjct: 2303 PLLWKCRPQDPC-GAAYVP-----IGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLA 2356

Query: 539  AGYFNNPGKTSEVYKVD---ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595
             GY N PG T+E +  D     G   + TGD+ +   DG +E + R    VK++ G  I 
Sbjct: 2357 RGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIR-GFRIE 2415

Query: 596  LGKIPSTTTVLP 607
            LG+I +     P
Sbjct: 2416 LGEIEARLQAHP 2427

Length = 5163

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 72/330 (21%), Positives = 111/330 (33%), Gaps = 85/330 (25%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPG-----RSDVYLAYLPLAHV 329
           +A  +YTSG+TG PKGVM  H + +  A A   + L   PG      S ++ AY  L + 
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAY-GLGNS 151

Query: 330 LELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389
           L       +     A+      T       + +         +PT++  VPA++  + E 
Sbjct: 152 LLFP----LFSGASAVLLPGWPTPEAVLDLLAR--------HRPTVLFGVPALYRALLES 199

Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
                   G  +  LF                               +SVR         
Sbjct: 200 --------GAGSAPLF-------------------------------RSVRLC------- 213

Query: 450 MICGGAPLSADSQRFINICMGAPIGQAYGLTET----CAGSTFSEWDDPSVGRVGPPVPC 505
            +  G  L A          G  I    G TE      + +        + GR  P    
Sbjct: 214 -VSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFIS-NRPGAARPGTTGRPVPGYEA 271

Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
               LV  + G    +      G++ V G ++  GY+N P KT    + D     W  TG
Sbjct: 272 R---LVD-ESGREVPAGTV---GDLWVRGPSLAPGYWNLPEKTQRTLR-DG----WLRTG 319

Query: 566 DIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595
           D      DG      R  D++K+  G+++S
Sbjct: 320 DRFSRDADGWYRYQGRADDMIKVS-GQWVS 348

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 68.0 bits (167), Expect = 3e-12
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 13/124 (10%)

Query: 477 YGLTETCAGSTF---SEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV 532
           YGLTE    ST+    E D  P    +G  +P   + +V  DE G +    P   GE+V 
Sbjct: 150 YGLTE-AFRSTYLPPEELDRRP--DSIGKAIPNVELWVV--DEDGNRC--APGEVGELVH 202

Query: 533 GGFNVTAGYFNNPGKTSEVYK-VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHG 591
            G NV  GY+N+P  T+E  +     G    YTGD+ ++  +G L  + RK D++K + G
Sbjct: 203 RGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTR-G 261

Query: 592 EYIS 595
             +S
Sbjct: 262 YRVS 265

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 69.3 bits (169), Expect = 3e-12
 Identities = 51/143 (35%), Positives = 68/143 (47%), Gaps = 27/143 (18%)

Query: 469 MGAPIGQAYGLTETCAGSTFSEWDD-----PS------VGRVGPPVPCCYIKLVSWDEGG 517
           +G  +  AYGLTE      F EW D     P         R G  +    + L   D   
Sbjct: 323 LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSI----LGLADVDVKN 378

Query: 518 YKTSDKPMPR-----GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP 572
            +T  + +PR     GEIV+ G ++  GY  NP  TSE +K       W  TGD+G ++P
Sbjct: 379 KETQ-ESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK-----HGWLNTGDVGVIHP 432

Query: 573 DGCLEIIDRKKDIVKLQHGEYIS 595
           DG +EI DR KDI+ +  GE IS
Sbjct: 433 DGHVEIKDRSKDII-ISGGENIS 454

Length = 579

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 68.2 bits (168), Expect = 4e-12
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 25/98 (25%)

Query: 266 PVDPSLPSQ------------------NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
           P+DP+ P++                  + +A ++YTSGSTG PKGVM+ H  +V   A +
Sbjct: 66  PLDPAYPAERLAYMLEDSGAKLLLTDPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWL 125

Query: 308 KTLIPNPGRSDVYLAYLPL---AHVLELAAESIMLCAG 342
           +         D  L +      A V E+      L +G
Sbjct: 126 QERYG-LTAGDRVLQFASFSFDASVWEIFP---PLLSG 159

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 68.8 bits (169), Expect = 4e-12
 Identities = 91/464 (19%), Positives = 159/464 (34%), Gaps = 94/464 (20%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +++ + A GL+  G       A+LA     + +A     +    ++ + +    
Sbjct: 76  TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
             L        V  L+ D +    LSA+   L  ++      +D     S         T
Sbjct: 136 PQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS---------T 186

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
             +  ++      +P     P + G  VI+ TSG+TG PKG      + +A  A + + +
Sbjct: 187 DETLDDLIAGSSTAP--LPKPPKPGGIVIL-TSGTTGTPKGAPRPEPSPLAPLAGLLSRV 243

Query: 312 PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIK-KGTKGDVSV 370
           P        L   P+ H    A          A+  GST+ +     +   + T  D++ 
Sbjct: 244 PFRAGETTLLP-APMFHATGWA------HLTLAMALGSTVVL---RRRFDPEATLEDIAK 293

Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
            K T +  VP +  R+ + +  +V  K   +                             
Sbjct: 294 HKATALVVVPVMLSRILD-LGPEVLAKYDTS----------------------------- 323

Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTE--TCAGST 487
                           ++ +   G+ LS + + R +    G  +   YG TE      +T
Sbjct: 324 ---------------SLKIIFVSGSALSPELATRALEA-FGPVLYNLYGSTEVAFATIAT 367

Query: 488 FSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFN 543
             +  + P    VG P     +K+          +   +PRG    I VG      GY +
Sbjct: 368 PEDLAEAPGT--VGRPPKGVTVKI-------LDENGNEVPRGVVGRIFVGNGFPFEGYTD 418

Query: 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKD-IV 586
              K      +D  G+    +GD+G    DG L +  R  D IV
Sbjct: 419 GRDKQ----IID--GL--LSSGDVGYFDEDGLLFVDGRDDDMIV 454

Length = 549

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 68.9 bits (169), Expect = 4e-12
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 48/178 (26%)

Query: 445 GRIRFMICGGAPLSAD-SQRFINIC--MGAP---IGQAYGLTETCAGSTFS--------- 489
             +R++I  G  + A   +RF+ +    G P   I  A+G++ETC+G T+S         
Sbjct: 289 SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDT 348

Query: 490 ---------------EWDDPSVGR---VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI- 530
                            D P       +G P+P   I++V  DE         +P GE+ 
Sbjct: 349 GGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV--DE-----DGALLPEGEVG 401

Query: 531 --VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
              V G  VT+GY+ NP   +E +  D  G  WF TGD+G ++ DG L I  R+KD++
Sbjct: 402 RLQVRGPTVTSGYYRNPEANAEAFTED--G--WFRTGDLGFLH-DGRLTITGREKDMI 454

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 68.0 bits (166), Expect = 6e-12
 Identities = 86/335 (25%), Positives = 122/335 (36%), Gaps = 88/335 (26%)

Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESI 337
           A+IM+T G+TGLPK V  TH NI ++  AI T        D  +A +PL H   L A  +
Sbjct: 179 AMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPRDATVAVMPLYHGHGLIAALL 237

Query: 338 MLCAGC------AIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391
              A        A G  S  T  D           D+  +  T   AVP I   + E   
Sbjct: 238 ATLASGGAVLLPARGRFSAHTFWD-----------DIKAVGATWYTAVPTIHQILLE--- 283

Query: 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI 451
                                 AA E                       A L    RF+ 
Sbjct: 284 ---------------------RAATEP-----------------SGRKPAAL----RFIR 301

Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETC--AGSTFSEW----DDPS-----VGRVG 500
              APL+A++ + +     AP+  A+G+TE      +T  E     ++P      VGR  
Sbjct: 302 SCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRST 361

Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
                  I++V  D             GE+ + G  V  GY  +P  T+  +        
Sbjct: 362 GA----QIRIVGSDGL----PLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDG----- 408

Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595
           W  TGD+G +   G L I  R K+++  + GE IS
Sbjct: 409 WLRTGDLGSLSAAGDLSIRGRIKELIN-RGGEKIS 442

Length = 534

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 67.8 bits (166), Expect = 8e-12
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 25/172 (14%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP--SVGRVGPPV 503
            +R  +C GAP+           +GA I  A+G+TE  A +     D    +    G P+
Sbjct: 313 SLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPL 372

Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
           P   +++V  D         P+P G+I    V G +   GY   P    ++   D  G  
Sbjct: 373 PGVEVRVVDAD-------GAPLPAGQIGRLQVRGCSNFGGYLKRP----QLNGTDADG-- 419

Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHH 612
           WF TGD+ ++  DG + I  R KD++ ++ GE I + +I +      LL+ H
Sbjct: 420 WFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEA------LLYRH 464

Length = 547

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 27/161 (16%)

Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-----GRV 499
             +  +  GGAP +A+      +  G P+   +G++E  AG+ F    D  V     G  
Sbjct: 252 RHLTALFTGGAPHAAEDILGW-LDDGIPMVDGFGMSE--AGTVFGMSVDCDVIRAKAGAA 308

Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKP--MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557
           G P P    ++V  D+ G   +D P  +P GE+++ G N++ GY+  P  T+  +     
Sbjct: 309 GIPTPTVQTRVV--DDQG---NDCPAGVP-GELLLRGPNLSPGYWRRPQATARAF--TGD 360

Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGK 598
           G  WF TGDI +   DG   ++DRKKD+       +IS G+
Sbjct: 361 G--WFRTGDIARRDADGFFWVVDRKKDM-------FISGGE 392

Length = 488

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 11/119 (9%)

Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPS-VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR- 527
           G PI + YGL+ET   +T +  D     G +G P+P   + +   D+ G   +D P+   
Sbjct: 352 GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIR--DDDG---NDLPLGEP 406

Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
           GEI + G  V AGY+N P +T++V   D     +F TGD+G +   G  +I+DRKKD++
Sbjct: 407 GEICIRGPQVMAGYWNRPDETAKVMTADG----FFRTGDVGVMDERGYTKIVDRKKDMI 461

Length = 557

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 66.2 bits (162), Expect = 3e-11
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 256 SEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
             +E+L    P  P  P++ +  A+++ TSGSTG+PK V++TH NI+A +A     +   
Sbjct: 147 LAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAG-TVQVNGF 205

Query: 315 GRSDVYLAYLPLAHVLELAAESIM-LCAGCA 344
              DV L ++PL HV  +    +  +  GC 
Sbjct: 206 TPDDVSLNWMPLDHVGGIVMLHLRDVYLGCQ 236

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 65.4 bits (160), Expect = 5e-11
 Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 10/203 (4%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ + +  FA+ L   G     R A+    C ++ I F G  +     V +     E
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSS--SLKTIKNVIYFENDGSEKDSGVSGGISN 249
             L + LN+     L+   +    +  V +  SL+ +      +   +E    +   +  
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRA 179

Query: 250 WTVSS------FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
             +++         +       P+ P  P+ + +A + YT G+TG+PKG   T  ++V T
Sbjct: 180 PRLAAAGAIDLLPALRACTAPVPLPP--PALDALAALNYTGGTTGMPKGCEHTQRDMVYT 237

Query: 304 AAAIKTLIPNPGRSDVYLAYLPL 326
           AAA   +    G   V+L++LP 
Sbjct: 238 AAAAYAVAVVGGEDSVFLSFLPE 260

Length = 567

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 65.2 bits (159), Expect = 5e-11
 Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 19/155 (12%)

Query: 447 IRFMICGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDP------SVGRV 499
           +R  I  GAP   +  R +   M    +  AYG+TET   S  +   D       +VGR 
Sbjct: 319 LRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRT 378

Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
            P +     K+V  D       +     GE+   G++V  GY+NNP  T+E   +DE G 
Sbjct: 379 QPHLEV---KVVDPDGATVPRGEI----GELCTRGYSVMKGYWNNPEATAES--IDEDG- 428

Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
            W +TGD+  +   G + I+ R KD++ ++ GE I
Sbjct: 429 -WMHTGDLATMDEQGYVRIVGRSKDMI-IRGGENI 461

Length = 558

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 64.2 bits (157), Expect = 9e-11
 Identities = 63/231 (27%), Positives = 88/231 (38%), Gaps = 46/231 (19%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVT---IYSS 188
           TY +V   +   A+GL   G        +L   C E+ +AF G  R+     T    Y+ 
Sbjct: 52  TYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTP 111

Query: 189 LGEDALIHS-LNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK----DSGV 243
               A I      +    +I  S  + KL                  D        D   
Sbjct: 112 ----AEIAKQAKASGAKLIITQSCYVDKLKG-------------LAEDDGVTVVTIDDPP 154

Query: 244 SGGISNWTVSSFSEVEKLGKR-SPVDP-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
            G +    ++   E E      SP D  +LP         Y+SG+TGLPKGVM+TH  +V
Sbjct: 155 EGCLHFSELTQADENELPEVEISPDDVVALP---------YSSGTTGLPKGVMLTHKGLV 205

Query: 302 ATAAAIKTLIPNP----GRSDVYLAYLPLAHVLELAAESIMLC---AGCAI 345
            T+ A +    NP       DV L  LP+ H+  L   S++LC    G AI
Sbjct: 206 -TSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSL--NSVLLCGLRVGAAI 253

Length = 537

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 53/198 (26%), Positives = 67/198 (33%), Gaps = 63/198 (31%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +     A  L   G     R A+  +   ++ IA+    R    VV +     E
Sbjct: 3   TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
             L H L                                         DSG    I    
Sbjct: 63  AELEHIL----------------------------------------NDSGARVLIV--- 79

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
               SE++                 VAVI YTSG+TGLPKG M TH  ++ATAAA     
Sbjct: 80  ---GSELDD----------------VAVIPYTSGTTGLPKGCMHTHRTVLATAAASA-AW 119

Query: 312 PNPGRSDVYLAYLPLAHV 329
                  V LA+LPL HV
Sbjct: 120 SGLTPDSVLLAFLPLFHV 137

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 65.0 bits (158), Expect = 1e-10
 Identities = 89/483 (18%), Positives = 157/483 (32%), Gaps = 108/483 (22%)

Query: 132  TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
            TY E+  RA   A  L+  G   +    I  E   E  +      +     V +      
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPR 4637

Query: 192  DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
            + L + + ++    L+  S  L++L                          +  G+++  
Sbjct: 4638 ERLAYMMEDSGAALLLTQSHLLQRLP-------------------------IPDGLASLA 4672

Query: 252  VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
            +    + E      P     P  N +A ++YTSGSTG PKGV ++HG++V    A     
Sbjct: 4673 LDRDEDWEGFPAHDPAVRLHP-DN-LAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGER- 4729

Query: 312  PNPGRSDVYLAYLPLAHVLELAAESIM--LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369
                  D  L ++  +   + + E +   L        G+++ + D S    +    ++ 
Sbjct: 4730 YELTPDDRVLQFMSFS--FDGSHEGLYHPLIN------GASVVIRDDSLWDPERLYAEIH 4781

Query: 370  VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM 429
              + T++   P    ++ E                         A  +G           
Sbjct: 4782 EHRVTVLVFPPVYLQQLAEH------------------------AERDGEP--------- 4808

Query: 430  LWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTF 488
                             +R    GG  ++  S            +   YG TET      
Sbjct: 4809 ---------------PSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETT----- 4848

Query: 489  SEWDDPSVGRVGPPVPC----CYIKLVSWDEGGYKTSDK--PMP---RGEIVVGGFNVTA 539
                   + +      C      I     +  GY    +  P+P    GE+ +GG  V  
Sbjct: 4849 ---VTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPLPVGVAGELYLGGEGVAR 4905

Query: 540  GYFNNPGKTSEVY---KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596
            GY   P  T+E +        G   + TGD+ +   DG ++ + R    VK++ G  I L
Sbjct: 4906 GYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIR-GFRIEL 4964

Query: 597  GKI 599
            G+I
Sbjct: 4965 GEI 4967

Length = 5163

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 25/124 (20%)

Query: 476 AYGLTETCAGSTFSEW---DD------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526
           A+G+TET    TF+     DD      P    VG PVP    K+  ++ G      + +P
Sbjct: 359 AWGMTETHTCDTFTAGFQDDDFDLLSQPVF--VGLPVPGTEFKICDFETG------ELLP 410

Query: 527 ---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKK 583
               GEIVV   ++  GY+N P  T+E       G  W +TGDIG++   G L  + R+K
Sbjct: 411 LGAEGEIVVRTPSLLKGYWNKPEATAEAL---RDG--WLHTGDIGKIDEQGFLHYLGRRK 465

Query: 584 DIVK 587
           +++K
Sbjct: 466 EMLK 469

Length = 567

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 55/226 (24%), Positives = 80/226 (35%), Gaps = 23/226 (10%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
           L  G   W TY E    A + A  L   G     R A++    +E+   F GC       
Sbjct: 40  LVFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIA 98

Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
           V I ++L    L H L  +    L+ ++  L  L A       +  V             
Sbjct: 99  VPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW------------ 146

Query: 243 VSGGISNWTVSS-FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI- 300
           +    ++ +V + +S        +P   +       A I+YTSG+TG  KGV   H    
Sbjct: 147 LLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFY 206

Query: 301 ---VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGC 343
                +A  ++      G  DV    LPL H   L A    L AG 
Sbjct: 207 WWGRNSAEDLEI-----GADDVLYTTLPLFHTNALNAFFQALLAGA 247

Length = 542

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 77/393 (19%), Positives = 144/393 (36%), Gaps = 69/393 (17%)

Query: 77  PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
           P  G  ++  ++E+S   H   R LG+                      G+ EW TYG V
Sbjct: 422 PLAGVRSLGEMWERSVTRHSTFRCLGQTS------------------ESGESEWLTYGTV 463

Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
             RA    SGL+  G        +  E      I    C     T + +   +G+ + + 
Sbjct: 464 DARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMR 520

Query: 197 SL-NETQVTTLICDSKQLKK-LSAVSSSLKTIKNVIYF---ENDGSEKDSGVSGGISNWT 251
           +L +E ++  +  D   +   L+  S  L+T+     F   ++    +D  +       T
Sbjct: 521 TLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNI-------T 573

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY-----TSGSTGLPKGVMITHGNIVATAAA 306
           +  +  VE+ G+  PV P         V  Y     TS S      V +TH +++     
Sbjct: 574 LIPYEFVEQKGRLCPV-PLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVL---RD 629

Query: 307 IKTLI-----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIK 361
           I TL+     P+  +  + + + P A +         +       +GS +   D +   +
Sbjct: 630 ISTLVMTGVLPSSFKKHLMVHFTPFAMLFN------RVFVLGLFAHGSAVATVDAAHLQR 683

Query: 362 KGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWF 421
              K      +PT++ A P++F   R  + +  E    +   LF   ++ R   +     
Sbjct: 684 AFVK-----FQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLIN---- 734

Query: 422 GAWGLER---MLWDAIVFKSVRAVLGGRIRFMI 451
               + R    L   I F++ + +LGG +  ++
Sbjct: 735 ----IHRRDSSLLRFIFFRATQELLGGCVEKIV 763

Length = 1452

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 63.1 bits (153), Expect = 2e-10
 Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 19/153 (12%)

Query: 446 RIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTE-TCAGSTFSEWDDPSVGR----- 498
           +++ ++   APL+ +    F     G  + +AYGLTE +C   T     DP  G      
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHG---DPEKGHGIAKK 360

Query: 499 --VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556
             VG  +P   +K +  D G     + P   GE+ V    V  GY+NN  +T     +DE
Sbjct: 361 NSVGFILPNLEVKFIDPDTGRSLPKNTP---GELCVRSQCVMQGYYNNKEETDRT--IDE 415

Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQ 589
            G  W +TGDIG +  DG + I+DR K+++K +
Sbjct: 416 DG--WLHTGDIGYIDDDGDIFIVDRIKELIKYK 446

Length = 546

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 63.8 bits (156), Expect = 2e-10
 Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 28/160 (17%)

Query: 188 SLGEDALIHSLNETQVTTLICDSKQL---KKLSAVSSSLKTIKNVIYFENDGSEKDSGVS 244
           S G   ++ +    QV T +  S+      +L  +  +L+    +IY E+        V 
Sbjct: 715 SAGIANILSACKAAQVKT-VLTSRAFIEKARLGPLIEALEFGIRIIYLED--------VR 765

Query: 245 GGISNWT------VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
             I             F  V     R P DP        AVI++TSGS G PKGV+++H 
Sbjct: 766 AQIGLADKIKGLLAGRFPLV-YFCNRDPDDP--------AVILFTSGSEGTPKGVVLSHR 816

Query: 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM 338
           N++A  A +   I      D     LP+ H   L    ++
Sbjct: 817 NLLANRAQVAARIDF-SPEDKVFNALPVFHSFGLTGGLVL 855

Length = 1140

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 62.3 bits (152), Expect = 4e-10
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 23/152 (15%)

Query: 447 IRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFS-------EWDDPSVGR 498
           IR ++ G APL  + +      +  A +GQ YG+TE  AG   +       E      G 
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE--AGPVLAMCLAFAKEPFPVKSGS 357

Query: 499 VGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVD 555
            G  V    +K+V  + G        +PR   GEI + G  +  GY N+P  T+    +D
Sbjct: 358 CGTVVRNAELKIVDPETG------ASLPRNQPGEICIRGPQIMKGYLNDPEATANT--ID 409

Query: 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           + G  W +TGDIG +  D  L I+DR K+++K
Sbjct: 410 KDG--WLHTGDIGYIDDDDELFIVDRLKELIK 439

Length = 537

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 62.2 bits (152), Expect = 4e-10
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 24/198 (12%)

Query: 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSA 218
           A+L E   E+  A+ G  +    V  + +      L HSLN      LI   + ++    
Sbjct: 91  ALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEE 150

Query: 219 VSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGV- 277
             + L      ++     +  D              + ++      +P      S++GV 
Sbjct: 151 ARADL-ARPPRLWVAGGDTLDDPE-----------GYEDLAAAAAGAPTTN-PASRSGVT 197

Query: 278 ----AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELA 333
               A  +YTSG+TGLPK  +++H   +        L+      DV    LPL H     
Sbjct: 198 AKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-RLTPDDVLYCCLPLYH----- 251

Query: 334 AESIMLCAGCAIGYGSTL 351
                +     +  G+TL
Sbjct: 252 NTGGTVAWSSVLAAGATL 269

Length = 600

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.1 bits (151), Expect = 5e-10
 Identities = 67/273 (24%), Positives = 109/273 (39%), Gaps = 58/273 (21%)

Query: 82  STMAALFEQSCKSHPQDRFLGKRKL--LGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDR 139
             + A+ +QSC+     RF  K     LGK                      TYGE++  
Sbjct: 24  PNIQAVLKQSCQ-----RFADKPAFSNLGKTL--------------------TYGELYKL 58

Query: 140 ACSFASGLVNFGHNVD----TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALI 195
           + +FA+ L     + D     R A+     +++ +A  G  R  + VV          + 
Sbjct: 59  SGAFAAWL---QQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREME 115

Query: 196 HSLNETQVTTLICDSKQLKKLSAVSSSLKT-IKNVIYFENDGSEKDSGVSGGISNWTVS- 253
           H  N++    L+C +        V    KT +K+VI  E   ++    +   + N  V  
Sbjct: 116 HQFNDSGAKALVCLANMAHLAEKVLP--KTGVKHVIVTEV--ADMLPPLKRLLINAVVKH 171

Query: 254 --------------SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN 299
                          F++    G   PV  + P  + VAV+ YT G+TG+ KG M+TH N
Sbjct: 172 VKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRN 231

Query: 300 IVATAAAIKTLIP---NPGRSDVYLAYLPLAHV 329
           +VA     + L+    N G  ++ +A LPL H+
Sbjct: 232 LVANMLQCRALMGSNLNEGC-EILIAPLPLYHI 263

Length = 562

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 61.1 bits (149), Expect = 5e-10
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH 328
           +A I+YTSGSTG PKGVM++H N+ A A +I   +      D  LA LP + 
Sbjct: 4   LAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLEL-TEDDRILAVLPFSF 54

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 62.0 bits (151), Expect = 5e-10
 Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 30/162 (18%)

Query: 447 IRFMICGGAPL-SADSQRFINICMGAPIGQAYGLTETCAGSTF------SEWDDPSVGRV 499
           +R++I  GAP+  AD +R +   +G  + Q +GL E     T          D P   R+
Sbjct: 282 LRYVIYAGAPMYRADQKRALAK-LGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDA-RI 339

Query: 500 GPPVPCCY----IKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555
           G    C +    +++   D+ G +    P   GEI V G  V AGY+NNP   ++ ++  
Sbjct: 340 GT---CGFERTGMEVQIQDDEGREL--PPGETGEICVIGPAVFAGYYNNPEANAKAFRDG 394

Query: 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597
                WF TGD+G +   G L I  R  D+       YIS G
Sbjct: 395 -----WFRTGDLGHLDARGFLYITGRASDM-------YISGG 424

Length = 528

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.6 bits (150), Expect = 8e-10
 Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 51/177 (28%)

Query: 447 IRFMICGGAPLS-ADSQRFINICMGAPIG-------QAYGLTETCAGSTFSEWDDP---- 494
           +RF + G  P+  AD +  ++   GA  G        AYG+ E     +FS         
Sbjct: 278 LRFALNGAEPIDPADVEDLLD--AGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVD 335

Query: 495 ----------------------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GE 529
                                  +  +GPP+P   +++V  DE G     + +P    G 
Sbjct: 336 EVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVV--DEDG-----QVLPPRGVGV 388

Query: 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
           I + G +VT GY    G    +   D  G  W  TGD+G +  +G + +  R KD++
Sbjct: 389 IELRGESVTPGYLTMDG---FIPAQDADG--WLDTGDLGYLTEEGEVVVCGRVKDVI 440

Length = 545

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI-KTLIPNPGRSDVYLAYLPLAHVLELA 333
           +  A+I++TSG+TG PKGV +TH N++A+A  I K+    P  SD  L  +PL H+  L 
Sbjct: 2   DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTP--SDRCLNVMPLFHIHGLI 59

Query: 334 AESIM--LCAGCAI 345
             S++  L AG ++
Sbjct: 60  V-SLLATLLAGGSV 72

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 60.7 bits (147), Expect = 2e-09
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 436  FKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS 495
             +   A     ++ ++CGG  L AD Q+ +    G P+   YG TE     T  +  +  
Sbjct: 3302 LEEEDAHRCTSLKRIVCGGEALPADLQQQVF--AGLPLYNLYGPTEATITVTHWQCVEEG 3359

Query: 496  VGR--VGPPVPCCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKTSE 550
                 +G P+      ++         S +P+P G   E+ +GG  +  GY N PG T+E
Sbjct: 3360 KDAVPIGRPIANRACYILD-------GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAE 3412

Query: 551  VYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
             +  D    G   + TGD+ +   DG +E I R    VK++ G  I LG+I
Sbjct: 3413 RFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIR-GFRIELGEI 3462

Length = 5163

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 18/173 (10%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI---YSS 188
           TY E+ +RA   A  L+  G        I A   +E+  A  G F+     V +   Y  
Sbjct: 30  TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV- 88

Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
             ED L + L+++    L+ + +   +++ V   L  ++ ++  E DGS  D    G + 
Sbjct: 89  --EDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVE-DGSGNDLL-PGAVD 144

Query: 249 NWTVSSFSEVEKL-GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI 300
                +    E+  G+RSP D           ++YT G+TG+PKGVM    +I
Sbjct: 145 YEDALAAGSPERDFGERSPDD---------LYLLYTGGTTGMPKGVMWRQEDI 188

Length = 533

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 59.6 bits (145), Expect = 3e-09
 Identities = 53/207 (25%), Positives = 76/207 (36%), Gaps = 17/207 (8%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           GD  + TY E +DR    AS L   G       A+LA        A  G       +V +
Sbjct: 26  GDRRY-TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPL 84

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
            + L  D +   LN ++   L  D + L       + L T K +I  E       +  S 
Sbjct: 85  NTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLST-KEIIDTEIIVISPAAEDSE 143

Query: 246 GISNWTVSSFSEVEKL---GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-GNIV 301
                      + E L   G   P+      +     + YTSG+TG PKGV+ TH G  +
Sbjct: 144 EG---------DYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYL 194

Query: 302 ATAAAIKTLIPNPGRSDVYLAYLPLAH 328
                +  +        VYL  LP+ H
Sbjct: 195 NALGNV--IEWGMPDRPVYLWTLPMFH 219

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 59.5 bits (145), Expect = 3e-09
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 19/79 (24%)

Query: 266 PVDPSLPSQ------------------NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
           P+DPS P++                  + +A I++TSGSTG PKGV I+H N+ +    +
Sbjct: 70  PLDPSQPAERIAKILEAAGPAALVADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWM 129

Query: 308 KTLIPNPGRSDVYLAYLPL 326
                     DV+    P 
Sbjct: 130 VEDFDLTEG-DVFSNQAPF 147

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 59.6 bits (145), Expect = 3e-09
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
            V  L    P+DP    ++ +A++  TSGSTG PK V ITHGN+ A A A+         
Sbjct: 134 TVADLLAADPIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVE 193

Query: 317 SDVYLAYLPLAH 328
           +DV +++LPL H
Sbjct: 194 TDVMVSWLPLFH 205

Length = 545

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 19/150 (12%)

Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
             +R ++  G PL+ +   +     G PI   YG TET          +   G +G P P
Sbjct: 197 SHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAP 256

Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVV-------GGFNVTAGYFNNPGKTSEVYKVDER 557
              + ++  D+ G +    P   G+I V       G F    GY  +P KT    + D  
Sbjct: 257 GYRVAII--DDEGNEL--PPGEEGDIAVRVKPRPPGLF---RGYLKDPEKTEATIRGD-- 307

Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
              W+ TGD      DG    + R  D++K
Sbjct: 308 ---WYLTGDRAIKDEDGYFWFVGRADDVIK 334

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 59.1 bits (144), Expect = 3e-09
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           GE+ +GG  V  GY+ +P  T+E +     G   + TGD+G+  PDG +E + R    VK
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386

Query: 588 LQHGEYISLGKIPST 602
           ++ G  + LG+I + 
Sbjct: 387 IR-GYRVELGEIEAA 400

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 59.2 bits (144), Expect = 3e-09
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 445 GRIRFMICGGAPLSA-DSQRFINICMGAPIGQAYGLTETCAG-STFSEWDDPSVGRVGPP 502
              R ++ G A L      R   +    P+ + YG+TET    ST ++  +   G VG P
Sbjct: 241 RGARLLVSGSAALPVPVFDRLAALTGHRPV-ERYGMTETLITLSTRAD-GERRPGWVGLP 298

Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562
           +     +LV  ++GG    D     GE+ V G  +  GY N P  T+  +  D     WF
Sbjct: 299 LAGVETRLVD-EDGGPVPHD-GETVGELQVRGPTLFDGYLNRPDATAAAFTADG----WF 352

Query: 563 YTGDIGQVYPDGCLEIIDRKK-DIVK 587
            TGD+  V PDG   I+ R+  D++K
Sbjct: 353 RTGDVAVVDPDGMHRIVGRESTDLIK 378

Length = 471

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
            F +  + G+   + P     + +AV+ YT G+TGL KG M+THGN+VA    ++  +  
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 314 PGR---------SDVYLAYLPLAHVLELAAESI-MLCAG 342
            G           +V +A LPL H+    A  + M+ +G
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSG 284

Length = 562

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 16/174 (9%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           +YGE+  +     + L   G   + R  +L    V++ IAF G  R  I  V + + L  
Sbjct: 32  SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           D   + L +++   +    + L  + A       +++ +            V G      
Sbjct: 92  DDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRV------------VVGRPEAGE 139

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATA 304
           V      E L   S       +Q +  A  +Y+SGSTG+PKGV+ TH N   TA
Sbjct: 140 VQL---AELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTA 190

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 57.9 bits (141), Expect = 9e-09
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 29/174 (16%)

Query: 441 AVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFS-----EWDDP 494
             L G +R ++ GG  LS    +R +  C G  +   YG TE    +TFS        D 
Sbjct: 237 EALAG-LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTE---NTTFSTCHVITRLDE 292

Query: 495 SVGRV--GPPVP--CCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGK 547
           +   +  G P+P    YI     DE G     +P+P    GE+ VGG  +  GY N P  
Sbjct: 293 AADSIPIGRPIPNTTVYI----LDEEG-----QPVPIGVPGELYVGGDGLALGYLNRPEL 343

Query: 548 TSEVYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
           T+E +  D    G   + TGD+ +  PDG +E + R    VK++ G  I LG+I
Sbjct: 344 TAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIR-GFRIELGEI 396

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 47/204 (23%), Positives = 68/204 (33%), Gaps = 44/204 (21%)

Query: 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYS 187
           Y W+   +  DR    A GL+  G     R  I A  C EW +      R    +V I  
Sbjct: 46  YTWRQLADAVDR---LARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINP 102

Query: 188 SLGEDALIHSLNETQVTTLIC-----DSKQLKKLSAVSSSLKT-------------IKNV 229
           +     L ++L ++ V  +IC      S     L  +   L               ++ V
Sbjct: 103 AYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGV 162

Query: 230 IYFENDGSEKDSGVSGGISNW--------TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIM 281
           +               G   W        TVS  +  E+       DP          I 
Sbjct: 163 VSL-------APAPPPGFLAWHELQARGETVSREALAERQASLDRDDP--------INIQ 207

Query: 282 YTSGSTGLPKGVMITHGNIVATAA 305
           YTSG+TG PKG  ++H NI+    
Sbjct: 208 YTSGTTGFPKGATLSHHNILNNGY 231

Length = 558

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 57.9 bits (141), Expect = 1e-08
 Identities = 38/170 (22%), Positives = 54/170 (31%), Gaps = 30/170 (17%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +RA   A  L   G       A+L E   E  +A     +     V +  +   
Sbjct: 14  TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           + L   L ++    L+   + L  L+        I        D                
Sbjct: 74  ERLAFMLEDSGARVLL-TDESLAPLARADQLPLVILEEELDAEDAGPP------------ 120

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
                          VD         A +MYTSGSTG PKGV + H  +V
Sbjct: 121 ------------APAVDADDL-----AYVMYTSGSTGRPKGVAVPHRGVV 153

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 55/215 (25%), Positives = 81/215 (37%), Gaps = 32/215 (14%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
           L LGD    TYG++ DR   +       G       A+L+    E  +A        +  
Sbjct: 31  LVLGDTRL-TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR 89

Query: 183 VTIY--SSLGEDALIHSLNETQVTTLICDSKQLKK----LSAVSSSLKTIKNVIYFENDG 236
             ++   SL + A +  L +  ++TLI D     +    L A   SLK +          
Sbjct: 90  TALHPLGSLDDHAYV--LEDAGISTLIVDPAPFVERALALLARVPSLKHV---------- 137

Query: 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296
                 ++ G     V   +   K G    V  +LP    +A + YT G+TG PKGVM T
Sbjct: 138 ------LTLGPVPDGVDLLAAAAKFGPAPLVAAALPPD--IAGLAYTGGTTGKPKGVMGT 189

Query: 297 HGNIVATAAAIKTL--IPNPGRSDVYLAYLPLAHV 329
           H +I   A         P   R   +L   PL+H 
Sbjct: 190 HRSIATMAQIQLAEWEWPADPR---FLMCTPLSHA 221

Length = 524

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 446 RIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEWDDP--SVGRVGPP 502
            +R +  G AP S    R +      A I  A+G TE    +     +D    +G VG  
Sbjct: 291 ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKV 350

Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPR-GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
           +P    ++V  DE     +D P+   GEIV     + +GY+NNP  T+E +     G  W
Sbjct: 351 IPTVAARVV--DE---NMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF---AGG--W 400

Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
           F++GD+ +   +G + ++DRKKD++ +  GE I
Sbjct: 401 FHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENI 432

Length = 542

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 22/150 (14%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG-STFSEWDDPSVGRVGPPVP 504
           R+R +  GG  L  +   +    +G  + + YG TE        +       G +G PVP
Sbjct: 208 RLRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVP 267

Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA-------GYFNNPGKTSEVYKVDER 557
              + +V  D+ G     +P+P GE  VG   V         GY+NNP  T+  +  D  
Sbjct: 268 GHEVAVV--DDAG-----RPVPPGE--VGEIAVKRPDPVMFLGYWNNPEATAAKFAGD-- 316

Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
              W  TGD+G+   DG L    R  D++K
Sbjct: 317 ---WLLTGDLGRRDADGYLWFKGRADDVIK 343

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV 329
           VA+++YTSG+TG PKGVM TH  ++A   +    +      DV L   PLAH+
Sbjct: 95  VALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL-GLTPDDVVLMPSPLAHI 146

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 56.8 bits (138), Expect = 2e-08
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV--LELAAESI 337
           I+YTSG+TG PKGV++TH  ++  A     L+      DV L  LPL H+     +  + 
Sbjct: 86  ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPD-DVLLTPLPLFHINAQAYSVYAA 144

Query: 338 MLCAGCAI 345
           +L     +
Sbjct: 145 LLVGATLV 152

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 57.3 bits (139), Expect = 2e-08
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 26/127 (20%)

Query: 472 PI-GQAYGLTETCAGSTFS-----EWDDPSVGRV---GPPVPCCYIKLVSWDEGGYKTSD 522
           PI  Q YG TE  A    +     + D     R+   G P P   + L+  DE       
Sbjct: 307 PIFAQYYGQTE--APMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALL--DE-----DG 357

Query: 523 KPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEII 579
           + + +   GEI V G  V  GY+N P +T+E ++       W +TGD+ +   DG   I+
Sbjct: 358 REVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDG-----WLHTGDVAREDEDGFYYIV 412

Query: 580 DRKKDIV 586
           DRKKD++
Sbjct: 413 DRKKDMI 419

Length = 524

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 56.4 bits (137), Expect = 3e-08
 Identities = 54/206 (26%), Positives = 77/206 (37%), Gaps = 52/206 (25%)

Query: 127 DYEWQTYGEVFDRACS-FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT---- 181
              W TY E F+      A GL+  G     R  I A    EW         Q  T    
Sbjct: 41  GLRW-TYRE-FNEEVDALAKGLLALGIEKGDRVGIWAPNVPEW------VLTQFATAKIG 92

Query: 182 --VVTIYSSLGEDALIHSLNETQVTTLIC-----DSKQLKKLSAVSSSLKT--------- 225
             +VTI  +     L ++LN++    LI      DS  +  L  ++  L T         
Sbjct: 93  AILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSA 152

Query: 226 ----IKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP------SLPSQN 275
               ++ VI+    G EK  G+          +F E+  LG+            +L   +
Sbjct: 153 RLPELRRVIFL---GDEKHPGML---------NFDELLALGRAVDDAELAARQATL-DPD 199

Query: 276 GVAVIMYTSGSTGLPKGVMITHGNIV 301
               I YTSG+TG PKG  +TH NI+
Sbjct: 200 DPINIQYTSGTTGFPKGATLTHRNIL 225

Length = 559

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 23/88 (26%)

Query: 266 PVDPSLPSQ-------------------NGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306
           P+DPS P +                   +  A ++YTSGSTG PKGV+ITH NI     A
Sbjct: 71  PIDPSAPVERLQFIIEDSGATVVLTSSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRA 130

Query: 307 IKTLIPNPGRSDVYLAYLPLA---HVLE 331
              ++      D  L +  +A    +LE
Sbjct: 131 EGAILGI-RPGDRVLQFASIAFDVSILE 157

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 6/63 (9%)

Query: 269 PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLP 325
           P+L   + +A + YTSGST LPKGV ++HGN+VA    I+    +  NP   DV +++LP
Sbjct: 161 PALQPDD-IAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNP--DDVIVSWLP 217

Query: 326 LAH 328
           L H
Sbjct: 218 LYH 220

Length = 4334

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 56.0 bits (136), Expect = 4e-08
 Identities = 47/186 (25%), Positives = 69/186 (37%), Gaps = 57/186 (30%)

Query: 445 GRIRFMICGGAPLSAD-----SQRFINICMGAPIG---QA----YGLTETCAGSTFSEWD 492
              R    G  P+ AD     ++RF      AP G   +A    YGL E     +     
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAERF------APAGFRPEAFLPCYGLAEATLAVSGGPPG 323

Query: 493 DPSVGR---------------------------VGPPVPCCYIKLVSWDEGGYKTSDKPM 525
              V                              G P+P   +++V   E       +P+
Sbjct: 324 AGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVD-PETR-----RPL 377

Query: 526 PR---GEIVVGGFNVTAGYFNNPGKTSEV--YKVDERGMCWFYTGDIGQVYPDGCLEIID 580
           P    GEI V G +V AGY+N P  T+E    ++      W  TGD+G ++ DG L +  
Sbjct: 378 PDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLH-DGELYVTG 436

Query: 581 RKKDIV 586
           R KD++
Sbjct: 437 RLKDLI 442

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 55.3 bits (134), Expect = 6e-08
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 521 SDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLE 577
               +     GEIV     +  GY+++P KT+E ++       WF++GD+G +  +G + 
Sbjct: 358 DGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGG-----WFHSGDLGVMDEEGYIT 412

Query: 578 IIDRKKDIVK 587
           ++DRKKD++K
Sbjct: 413 VVDRKKDMIK 422

Length = 523

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 55.1 bits (133), Expect = 7e-08
 Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 34/164 (20%)

Query: 444 GGRIRFMICGGAP---LSADSQRFINICMGAPIGQAYGLTET---CAGSTFSEWDDPSVG 497
             R+R  +  G P    +A  +RF     G  +   YG TET    A +          G
Sbjct: 293 AHRVRVALGPGVPAALHAAFRERF-----GVDLLDGYGSTETNFVIAVT----HGSQRPG 343

Query: 498 RVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGG---FNVTAGYFNNPGKTSEV 551
            +G   P    ++V  DE      D+ +P    GE+++     F    GYF  P KT E 
Sbjct: 344 SMGRLAPGFEARVV--DEH-----DQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEA 396

Query: 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595
           ++       WF+TGD      DG    +DR KD ++ + GE IS
Sbjct: 397 WR-----NLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENIS 434

Length = 542

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 28/177 (15%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           +Y E+  +A   A  L+  G   D    I  E  +E  +      +     V +     +
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           D L + L+++ V  L+  S  L +L  V + L+++           E    + G      
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLP-VPAGLRSL--------CLDEPADLLCG------ 643

Query: 252 VSSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
                        S  +P +    + +A ++YTSGSTG PKGV I+HG +      I
Sbjct: 644 ------------YSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVI 688

Length = 3956

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 25/149 (16%)

Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA--GSTFSEW-DDPSVGRVGPPV 503
           +R +I   AP  AD +R +    G  I + YG TE+ A   +T  +    P  G VG   
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHP--GTVGKAA 330

Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEI------VVGGFNVTAGYFNNPGKTSEVYKVDER 557
           P   ++ V  DE G     +P+P+GEI      + G  + T  Y N P K +E+    +R
Sbjct: 331 PGAELRFV--DEDG-----RPLPQGEIGEIYSRIAGNPDFT--YHNKPEKRAEI----DR 377

Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
           G  +  +GD+G +  DG L + DRK+D+V
Sbjct: 378 GG-FITSGDVGYLDADGYLFLCDRKRDMV 405

Length = 509

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 27/137 (19%)

Query: 477 YGLTETCAGSTFSE-----WDDPSVGRVGPPVP--CCYIKLVSWDEGGYKTSDKPMPR-- 527
           YG +E    ST++E        PS+GR   P+     Y+     D        +P+P   
Sbjct: 246 YGPSEDTTYSTYAEVEPGASRTPSIGR---PLAGTQAYV----LDAHL-----QPVPVGV 293

Query: 528 -GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC---WFY-TGDIGQVYPDGCLEIIDRK 582
            GE+ +GG  V  GY   P  T+E +  +          Y TGD+ +   DG LE + R 
Sbjct: 294 PGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRI 353

Query: 583 KDIVKLQHGEYISLGKI 599
            D VK++ G  I LG+I
Sbjct: 354 DDQVKVR-GFRIELGEI 369

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 52.7 bits (126), Expect = 6e-07
 Identities = 48/168 (28%), Positives = 68/168 (40%), Gaps = 30/168 (17%)

Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQA---YGLTETCAGSTFSEW-----DDPSVGR 498
           +R ++C G  L AD+Q    +    P       YG TE     T         D   +GR
Sbjct: 772 LRRIVCSGEALPADAQE--QVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGR 829

Query: 499 VGPPVP--CCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYK 553
              P+    CYI     D        +P+P    GE+ + G  +  GY   PG T+E + 
Sbjct: 830 ---PIANLACYI----LDANL-----EPVPVGVLGELYLAGRGLARGYHGRPGLTAERFV 877

Query: 554 VDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
                 G   + TGD+ +   DG +E   R    VKL+ G  I LG+I
Sbjct: 878 PSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLR-GLRIELGEI 924

Length = 5163

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 52.2 bits (126), Expect = 6e-07
 Identities = 46/183 (25%), Positives = 69/183 (37%), Gaps = 29/183 (15%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+    C FA+ L + G     R AI      E  IA   C R       ++     
Sbjct: 90  TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSA 149

Query: 192 DALIHSLNETQVTTLICDSKQ--------LKKL--SAVSSSLKTIKNVIYFENDGSEKDS 241
           +AL   +N+     +I   +         LK +   A+     ++++V+     G+    
Sbjct: 150 EALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP- 208

Query: 242 GVSGGISNW------TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI 295
               G   W        S++ E E +      DP          I+YTSGSTG PKGV+ 
Sbjct: 209 -WVEGRDVWWHDLMAKASAYCEPEPMD---SEDPLF--------ILYTSGSTGKPKGVLH 256

Query: 296 THG 298
           T G
Sbjct: 257 TTG 259

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 25/129 (19%)

Query: 477 YGLTETCAG----STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIV- 531
           YG+TET  G        +   PS+GR G     CY   +  D        +P+P GEI  
Sbjct: 319 YGMTETIVGIIGDRPGDKRRWPSIGRPG----FCYEAEIRDDHN------RPLPAGEIGE 368

Query: 532 -----VGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
                V G  +   Y+ +P  T++V + D     W +TGD G V  +G    +DR+ +++
Sbjct: 369 ICIKGVPGKTIFKEYYLDPKATAKVLEADG----WLHTGDTGYVDEEGFFYFVDRRCNMI 424

Query: 587 KLQHGEYIS 595
           K + GE +S
Sbjct: 425 K-RGGENVS 432

Length = 517

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 51.5 bits (124), Expect = 8e-07
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 18/55 (32%)

Query: 266 PVDPSLPSQ------------------NGVAVIMYTSGSTGLPKGVMITHGNIVA 302
           P+DP+ P +                  + +A ++YTSGSTG PKGV I H N  A
Sbjct: 78  PLDPAYPPERLAYILEDAGARLVLTDPDDLAYVIYTSGSTGRPKGVAIEHRNAAA 132

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 51.8 bits (125), Expect = 8e-07
 Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 28/182 (15%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E++   C FA+ L + G     R AI      E  IA   C R       +++    
Sbjct: 80  TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVVFAGFSA 139

Query: 192 DALIHSLNETQVTTLI-CDS-----KQLKKLSAVSSSLK---TIKNVIYFENDGSEKDSG 242
           +AL   +N+ +   LI  D      K +     V  +L+   +++ VI  +  G E    
Sbjct: 140 EALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEVP-- 197

Query: 243 VSGGISNW------TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296
           +  G   W        S + E E +      DP          I+YTSGSTG PKGV+ T
Sbjct: 198 MVEGRDVWWHDLMAKASPYCEPEPMD---AEDPLF--------ILYTSGSTGKPKGVVHT 246

Query: 297 HG 298
            G
Sbjct: 247 TG 248

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 38/176 (21%), Positives = 54/176 (30%), Gaps = 31/176 (17%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TYGE+  RA + A+ L   G       A++     E  +A  G        V I      
Sbjct: 14  TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           +     L       ++ D    +   A                                 
Sbjct: 74  ERRAAILARAGARAVLTDPGLAQPEEAPDL-----------------------------L 104

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
           V +           P     P    +A +++TSGSTG PKGVMITH   V T   +
Sbjct: 105 VVADDAAAAESPAPPPPRVDPDD--LAYVIFTSGSTGEPKGVMITHRAAVNTILDV 158

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 68/198 (34%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           G  E  T+G++ D +   A+ L   G     R  +      E  IA    ++     V +
Sbjct: 2   GTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPL 61

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
               G DA+ H L ++    L+                           DGS+       
Sbjct: 62  SVLFGPDAVEHRLRDSGARVLVT--------------------------DGSD------- 88

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
                                 DP        A+++YTSG+TG PKG +  H  ++    
Sbjct: 89  ----------------------DP--------AILIYTSGTTGPPKGALHGHRVLLGHLP 118

Query: 306 AIKT---LIPNPGRSDVY 320
            ++    L P PG  DV+
Sbjct: 119 GVELYFELAPRPG--DVF 134

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 19/223 (8%)

Query: 127 DYEWQTYGEVFDRACSF----------ASGLVNFGHNVDTRAAILAETCVEWFIAFQGCF 176
           DY  +   E  DR  ++          A+ L+  G+  D   A+      +  I F G  
Sbjct: 33  DYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGAL 92

Query: 177 RQSITVVTIYSSLGEDALIHSLNETQVTTLIC-DSKQLKKLSAVSSSLKTIKNVIYFEND 235
           +    VV +    GE AL H L+++    LI  D   L  ++        +  +I  E+D
Sbjct: 93  KAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDD 152

Query: 236 GSEKDSGVSGGI-SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
              K       I ++  + ++++  K G  +P +    + + VA++ YT G+TGLPKG M
Sbjct: 153 NWGKVGTPQAPIPADPRIVTYADFVK-GAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAM 211

Query: 295 ITHGNIVATAAAIKTLIPNPGRSDV-----YLAYLPLAHVLEL 332
           +THGN+  +A +I  +   P R+        +  LPL H+  L
Sbjct: 212 LTHGNL-TSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYAL 253

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 28/171 (16%)

Query: 447  IRFMICGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEW----DDPSVGRVGP 501
            +R ++CGG  L  ++ R     +    +   YG TET    T   W     D   GR   
Sbjct: 1836 LRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTH--WTCRRKDLE-GRDSV 1892

Query: 502  PV--PCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVY---- 552
            P+  P   +     D      S  P+P    GE+ +GG  +  GY N P  T+E +    
Sbjct: 1893 PIGQPIANLSTYILDA-----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADP 1947

Query: 553  --KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPS 601
               V  R    + TGD+ +   DG +E + R    VK++ G  I LG+I +
Sbjct: 1948 FGTVGSR---LYRTGDLARYRADGVIEYLGRIDHQVKIR-GFRIELGEIEA 1994

Length = 3956

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 38/189 (20%), Positives = 61/189 (32%), Gaps = 30/189 (15%)

Query: 429  MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGST 487
             L                +   + GG  +   + ++         +   YG TE     T
Sbjct: 3337 YLQQFAEDAGGAD--CASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVT 3394

Query: 488  FSEWDDPSVGRVGPP-VP--------CCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGF 535
               W          P  P          Y+               P+P G   E+ +GG 
Sbjct: 3395 L--WKCGGDAVCEAPYAPIGRPVAGRSIYV---------LDGQLNPVPVGVAGELYIGGV 3443

Query: 536  NVTAGYFNNPGKTSEVYKVDERGMC---WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGE 592
             +  GY   P  T+E +  D         + TGD+ +   DG +E + R    VK++ G 
Sbjct: 3444 GLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIR-GF 3502

Query: 593  YISLGKIPS 601
             I LG+I +
Sbjct: 3503 RIELGEIEA 3511

Length = 3956

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 51/177 (28%), Positives = 72/177 (40%), Gaps = 26/177 (14%)

Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICM-GAPIGQAYGLTETCAGSTFSEW 491
           I   S+R VL          GAP+  D  +RF+   M  A I   YG TE    ++    
Sbjct: 196 IQLPSLRRVLSA--------GAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGR 247

Query: 492 D-------DPSVGR---VGPPVPCCYIKLVSWDEGG--YKTSDKPMPR---GEIVVGGFN 536
           +        P  G    VG PVP   ++++  D+G       D  +P    GEI+V G +
Sbjct: 248 EVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPH 307

Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593
           VT  Y+N P  T  + K+ +    W   GD+G     G L    RK   V+   G  
Sbjct: 308 VTREYYNRPEATK-LAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTL 363

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 9/64 (14%)

Query: 266 PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLP 325
           P+D        VA+++ TSG+TG PKG M+T   + A+A A    +  PG+   +L  LP
Sbjct: 32  PIDD------DVALVVATSGTTGTPKGAMLTAAALTASADATHDRLGGPGQ---WLLALP 82

Query: 326 LAHV 329
             H+
Sbjct: 83  AHHI 86

Length = 358

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 48/161 (29%), Positives = 67/161 (41%), Gaps = 10/161 (6%)

Query: 443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502
                 F+ CG       ++  +     A I   YG TE     T  +     + +  P 
Sbjct: 257 YPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY-PR 315

Query: 503 VPCCYIK----LVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558
           +P  + K    L   DE G    +    +GEIV+ G +V+ GY NNP KT+E +   E G
Sbjct: 316 LPIGFAKPDMNLFIMDEEGEPLPEGE--KGEIVIVGPSVSKGYLNNPEKTAEAFFSHE-G 372

Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
              + TGD G +  DG L    R    +KL HG  I L  I
Sbjct: 373 QPAYRTGDAGTI-TDGQLFYQGRLDFQIKL-HGYRIELEDI 411

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA----TAAAIKT 309
            F++    G R    P     + VA + YT G+TG+ KG  + H NIVA      A ++ 
Sbjct: 183 RFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQP 242

Query: 310 LIPNPGRSD--VYLAYLPLAHVLELAAESIM 338
                 R D   ++  LPL H+  L    ++
Sbjct: 243 AFEKKPRPDQLNFVCALPLYHIFALTVCGLL 273

Length = 557

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 50.2 bits (120), Expect = 3e-06
 Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 28/170 (16%)

Query: 132  TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
            +Y E+  RA   A  L+  G   D    +  E  VE  +A     +     V +      
Sbjct: 3122 SYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPR 3181

Query: 192  DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
            + L + + ++ V  L+  +  L++L A +                   D     G S   
Sbjct: 3182 ERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTL------------DRLDLNGYSE-- 3227

Query: 252  VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
                         +P    +  +N +A ++YTSGSTG PKGV + HG + 
Sbjct: 3228 ------------NNP-STRVMGEN-LAYVIYTSGSTGKPKGVGVRHGALA 3263

Length = 3956

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 60/269 (22%), Positives = 99/269 (36%), Gaps = 62/269 (23%)

Query: 94  SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN 153
           ++  D            F+   DG ++           TYG++   +   A+ LV  G  
Sbjct: 3   NNLFDALRAAFADRDAPFIETPDGLRY-----------TYGDLDAASARLANLLVALGVK 51

Query: 154 VDTRAAILAETCVEWFIAFQGCFRQSITVV---TIYSS------LG--EDALIHSLNETQ 202
              R A+  E   E    +    R     +   T Y+       +G  E AL+       
Sbjct: 52  PGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALV------- 104

Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
               +CD      LS ++++     +V   + DG+      +          F  V    
Sbjct: 105 ----VCDPANFAWLSKIAAAAGAP-HVETLDADGTGSLLEAAAAAP----DDFETVP--- 152

Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-----TLIPNPGRS 317
            R   D        +A I+YTSG+TG  KG M++HGN+++ A  +      T    P   
Sbjct: 153 -RGADD--------LAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFT----PD-- 197

Query: 318 DVYLAYLPLAHVLEL-AAESIMLCAGCAI 345
           DV +  LP+ H   L  A ++ L AG ++
Sbjct: 198 DVLIHALPIFHTHGLFVATNVALLAGASM 226

Length = 504

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 49.6 bits (119), Expect = 4e-06
 Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556
           G  G PVP   +KLV  DE G + +D  +  GE+ V G +  AGY+N   KT E +  + 
Sbjct: 330 GTSGKPVPGYEVKLV--DEDGEEVADGEI--GELWVRGDSSAAGYWNRREKTRETFVGE- 384

Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595
               W  TGD      DG      R  D++K+  G ++S
Sbjct: 385 ----WTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVS 418

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 70/311 (22%), Positives = 113/311 (36%), Gaps = 60/311 (19%)

Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAE---S 336
           ++YT G+TG+PKGVM    +I              G               ++AA    +
Sbjct: 8   MLYTGGTTGMPKGVMWRQEDIFRVLLG--------GPDFATGEPTLEELAKQVAAGGAGT 59

Query: 337 IMLCAGCAI-GYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395
             L A   + G G  L ++   +       G   VL P         FD  R  V + VE
Sbjct: 60  RFLPACPLMHGAGQWLALSALFA-------GGTVVLLPDDK------FDPDR--VWRTVE 104

Query: 396 EKGGLTKNLFNIG--YKRRL-AAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMIC 452
           +    T  L  +G  + R L  A+E +  G + L  +                  R +  
Sbjct: 105 KHRVNT--LVIVGDAFARPLLEALEAA--GRYDLSSL------------------RAISS 142

Query: 453 GGAPLSADS-QRFINICMGAPIGQAYGLTETCA-GSTFSEWDDPSVGRVGPPVPCCYIKL 510
            GA  S +  Q  + +     +  A G +ET   GS+ S     S    G         +
Sbjct: 143 SGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGAS--ATGKFELGPDTVV 200

Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
           +  ++G           G I  GG  V  GY+ +P KT++ ++    G+ +   GD  +V
Sbjct: 201 LD-EDGSEVPPGSGEV-GWIARGGR-VPLGYYKDPEKTAKTFRE-IDGVRYAVPGDFARV 256

Query: 571 YPDGCLEIIDR 581
             DG + ++ R
Sbjct: 257 EADGTITLLGR 267

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 266 PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
           P+  S P     A I++TSGSTG PKGVM+    IV
Sbjct: 591 PLQLSQPHH--TAYIIFTSGSTGRPKGVMVGQTAIV 624

Length = 1296

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITH----GNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327
           P  + V  ++YTSG+TG PKGVM T      NIV  A  +       G  DV L   P+A
Sbjct: 194 PGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGL-----GADDVILMASPMA 248

Query: 328 H 328
           H
Sbjct: 249 H 249

Length = 547

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 49.4 bits (118), Expect = 5e-06
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 25/172 (14%)

Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPV 503
           ++ +  GGA  SA + R +    G  + Q +G+ E      ++  DDP+       G P+
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEGLV--NYTRLDDPAEIIFTTQGRPM 357

Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
                ++   D+ G      P+  GE   ++  G     GY+  P   +  +  D  G  
Sbjct: 358 -SPDDEVRVVDDHG-----NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAF--DAEG-- 407

Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHH 612
           ++YTGD+ ++ P+G + ++ R KD +  + GE I+  +I +      LL  H
Sbjct: 408 FYYTGDLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIEN------LLLAH 452

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.4 bits (118), Expect = 5e-06
 Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 13/208 (6%)

Query: 129 EWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYS 187
           E  T+  +  RA + A  L +  G   D R   +   C E                 +  
Sbjct: 37  EQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNK 96

Query: 188 SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI 247
            L  D ++H +N  +   ++ D +  ++L  +      ++ V++     S+ DS  +   
Sbjct: 97  QLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFI--GPSDADSAAAHMP 154

Query: 248 SNWTVSSFSEVEKLGKRSPVD--PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
               V S+  +  L  RS V   P L      A I Y++G+TG PKGV+ +H ++   + 
Sbjct: 155 EGIKVYSYEAL--LDGRSTVYDWPELDETTAAA-ICYSTGTTGAPKGVVYSHRSLYLQSL 211

Query: 306 AIKT---LIPNPGRSDVYLAYLPLAHVL 330
           +++T   L    G S  +L  +P+ HVL
Sbjct: 212 SLRTTDSLAVTHGES--FLCCVPIYHVL 237

Length = 576

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 43/178 (24%), Positives = 56/178 (31%), Gaps = 56/178 (31%)

Query: 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
            TY E+       ASGL   G     R  I      E  +A     +     V I+S  G
Sbjct: 8   WTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFG 67

Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
            DA+   L          ++K L                     DG  +           
Sbjct: 68  PDAVATRLQ-------DAEAKVL------------------ITADGFLRR---------- 92

Query: 251 TVSSFSEVEKLGKRSPV--DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306
                      GKR  +  DP        A+I+YTSG+TG PKG + TH      AA 
Sbjct: 93  -----------GKRVDLKDDP--------AMIIYTSGTTGKPKGTVHTHAGFPVKAAK 131

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 48.7 bits (116), Expect = 8e-06
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 274 QNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH 328
              VAVI++TSG+  LPKGV +TH N++A   A      +P   DV +++LP  H
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-SPKEDDVMMSFLPPFH 235

Length = 539

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 48.1 bits (115), Expect = 9e-06
 Identities = 44/198 (22%), Positives = 65/198 (32%), Gaps = 43/198 (21%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           +  ++   A + A  +         R A+LA   +   +A  G     + VV +    G 
Sbjct: 27  SRSDLAGAATAVAERVAGAR-----RVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGV 81

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
               H L          DS     L         + +V                      
Sbjct: 82  AERRHILA---------DSGAQAWLGPAPDDPAGLPHV---------------------- 110

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
                 V  L  RS      P  +  A+I+YTSG+TG PKGV+++   I A   A+    
Sbjct: 111 -----PVR-LHARSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW 164

Query: 312 PNPGRSDVYLAYLPLAHV 329
                 DV +  LPL HV
Sbjct: 165 QWTAD-DVLVHGLPLFHV 181

Length = 471

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 48.4 bits (116), Expect = 9e-06
 Identities = 44/130 (33%), Positives = 58/130 (44%), Gaps = 18/130 (13%)

Query: 448 RFMICGGAPLS---ADS--QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502
            F+ CG   L    A    +RF +    A I   YG TE     T  E  D  + +    
Sbjct: 264 HFLFCGEE-LPHKTAKKLLERFPS----ATIYNTYGPTEATVAVTSIEITDEMLDQY-KR 317

Query: 503 VPCCYIK----LVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558
           +P  Y K    L+  DE G K  D     GEIV+ G +V+ GY NNP KT+E +     G
Sbjct: 318 LPIGYAKPDSPLLIIDEEGTKLPD-GEQ-GEIVISGPSVSKGYLNNPEKTAEAFF-TFDG 374

Query: 559 MCWFYTGDIG 568
              ++TGD G
Sbjct: 375 QPAYHTGDAG 384

Length = 503

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.4 bits (116), Expect = 1e-05
 Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 453 GGAPL-SADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
           GGA +  A ++R   +  G    + YGLTET A +  +  D P +  +G P      +++
Sbjct: 313 GGAAMPEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVI 371

Query: 512 SWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIG 568
             +        + +P    GEIVV G  V  GY+N P  T+E + ++  G  +F TGD+G
Sbjct: 372 DPETL------EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAF-IEIDGKRFFRTGDLG 424

Query: 569 QVYPDGCLEIIDRKK 583
           ++  +G   I DR K
Sbjct: 425 RMDEEGYFFITDRLK 439

Length = 546

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 261  LGKRSPVDPSL-PSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
            L   S  +P++  +   +A ++YTSGSTG PKG    HG +V 
Sbjct: 1703 LEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVN 1745

Length = 3956

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326
            +P  +  A I++TSGSTG PKGV+ TH    A   A+++L       D  LA  P 
Sbjct: 80  GIPKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYG-IREGDRDLAAFPP 135

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 24/173 (13%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ +++ R  + A  L   G   D RA ILA   +E+ +AF G  +  +  V +    G 
Sbjct: 37  TWSQLYRRTLNVAEELRRHGSTGD-RAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQG- 94

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
                  ++ +V+ ++ D+      S V ++   + +V  +         G        +
Sbjct: 95  -----GAHDERVSAVLRDTSP----SVVLTTSAVVDDVTEY----VAPQPG-------QS 134

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQN--GVAVIMYTSGSTGLPKGVMITHGNIVA 302
                EV+ L   SP       ++    A + YTSGST  P GVM++H N++A
Sbjct: 135 APPVIEVDLLDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIA 187

Length = 578

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 27/218 (12%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFR-QSITV-VTIYSSL 189
           T+ E+ DR  + A  L   G     R  IL     E+  +        +I V V    + 
Sbjct: 44  TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103

Query: 190 GEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISN 249
            E A +  +++     ++ ++      +AV   +  +  V+            V+GG S+
Sbjct: 104 PEIAFL--VSDCGAHVVVTEAALAPVATAVRDIVPLLSTVV------------VAGGSSD 149

Query: 250 WTVSSFSEV--EKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
            +V  + ++  E     +PVD  +P  +  A+IMYTSG+TG PKG ++TH N+   A   
Sbjct: 150 DSVLGYEDLLAEAGPAHAPVD--IP-NDSPALIMYTSGTTGRPKGAVLTHANLTGQAM-- 204

Query: 308 KTLIPNPG---RSDVYLAYLPLAHVLELAAESIMLCAG 342
            T +   G    SDV    +PL H+  + +    L  G
Sbjct: 205 -TCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLG 241

Length = 542

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 20/126 (15%)

Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE 529
           G  + + +G TET        W +P  G +G P P   I ++  D  G   S +    GE
Sbjct: 326 GIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDII--DPDG--KSCEVGEEGE 381

Query: 530 IV--------VGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDR 581
           IV        +G F    GY+ +P +T+EV+        +++TGD   +  DG L  + R
Sbjct: 382 IVIRTSDGKPLGLFM---GYYRDPERTAEVWHDG-----YYHTGDTAWMDEDGYLWFVGR 433

Query: 582 KKDIVK 587
             D++K
Sbjct: 434 ADDLIK 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 47.3 bits (112), Expect = 3e-05
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 26/171 (15%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
            Y E+  RA   A  L+  G   D    +  E  +E  +A     +     V +      
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPA 597

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           + L + L ++ V  L+  S   +KL  +++ ++    V+  +   +              
Sbjct: 598 ERLAYMLEDSGVQLLLSQSHLGRKLP-LAAGVQ----VLDLDRPAAW------------- 639

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
           +  +SE       +P     P    +A ++YTSGSTG PKG    H  +  
Sbjct: 640 LEGYSE------ENPGTELNPEN--LAYVIYTSGSTGKPKGAGNRHRALSN 682

Length = 5163

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.1 bits (112), Expect = 3e-05
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 13/79 (16%)

Query: 528 GEIVVGGFNVTAGYFNNPGKTS----------EVYKVDERGMC--WFYTGDIGQVYPDGC 575
           GEI V G  VTA Y+++P +            +V   ++R     W  TGD+G V  DG 
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445

Query: 576 LEIIDRKKDIVKLQHGEYI 594
           L I DR +D+++   GE+I
Sbjct: 446 LTIHDRARDVIR-SGGEWI 463

Length = 576

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 46.8 bits (112), Expect = 3e-05
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV-YLAYLPLAHVLELAAE 335
            A  +YTSG+TGLPK  +++H      A A+   +      DV YL  LPL H     + 
Sbjct: 83  PAFYIYTSGTTGLPKAAIMSHRR-WLRAGAVFGGLGLLKPDDVLYLC-LPLYH-----SN 135

Query: 336 SIMLCAGCAIGYGSTL 351
           ++ +    A+  G++L
Sbjct: 136 ALTVGWSSALAAGASL 151

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 46.4 bits (111), Expect = 3e-05
 Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 24/148 (16%)

Query: 447 IRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFS---EW-DDPSVGRVGP 501
           +R  I   AP   +  +  I+   G  I + Y  +E   G T     +W   P  G VG 
Sbjct: 264 LRVAIHAAAPCPVEVKRAMID-WWGPIIHEYYASSEGG-GVTVITSEDWLAHP--GSVGK 319

Query: 502 PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG---YFNNPGKTSEVYKVDERG 558
            V    ++++  DE G       +P GEI    F +      Y N+P KT+         
Sbjct: 320 AV-LGEVRIL--DEDG-----NELPPGEIGTVYFEMDGYPFEYHNDPEKTAAAR----NP 367

Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
             W   GD+G +  DG L + DRK D++
Sbjct: 368 HGWVTVGDVGYLDEDGYLYLTDRKSDMI 395

Length = 502

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 46.5 bits (111), Expect = 4e-05
 Identities = 49/212 (23%), Positives = 72/212 (33%), Gaps = 19/212 (8%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+       A+ L + G       A L     E   A  G     I    I   L  
Sbjct: 60  TYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAGI-ANPINPLLEP 118

Query: 192 DALIHSLNETQVTTLICDSKQLK-----KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGG 246
           + +   L       L+            K++ V ++L  ++ V+  E D +    G    
Sbjct: 119 EQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVV--EVDLARYLPGPKRL 176

Query: 247 ISNWT-------VSSF-SEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
                       +  F +E+ +              + VA   +T G+TG+PK    THG
Sbjct: 177 AVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHG 236

Query: 299 NIVATAAAIKTLI-PNPGRSDVYLAYLPLAHV 329
           N VA A     L+   PG  D     LPL HV
Sbjct: 237 NEVANAWLGALLLGLGPG--DTVFCGLPLFHV 266

Length = 632

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 16/176 (9%)

Query: 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSL--GEDALIHSLNETQVTTLICDSKQLK 214
           + A+  + C E+   + G  +    +V I + L   E A I  L  +Q + L+  ++   
Sbjct: 64  KVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWI--LQNSQASLLVTSAQFYP 121

Query: 215 KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQ 274
               +     T    I         D GVS    ++T     +   L    P+     S 
Sbjct: 122 MYRQIQQEDATPLRHICLTRVALPADDGVS----SFTQLKAQQPATLCYAPPL-----ST 172

Query: 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR-SDVYLAYLPLAHV 329
           +  A I++TSG+T  PKGV+ITH N+    A   +      R  DVYL  +P  H+
Sbjct: 173 DDTAEILFTSGTTSRPKGVVITHYNLR--FAGYYSAWQCALRDDDVYLTVMPAFHI 226

Length = 517

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 11/147 (7%)

Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTET--CAGSTFSEWDDPSVGRVGPP 502
            ++R     G PL+ +  R+    +G  I   YG TET    G+  +   +   G +G P
Sbjct: 205 LKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLP 264

Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYFNNPGKTSEVYKVDERGMC 560
           +P    ++   D+ G   +D    +  I V        +GY+++P KT+E+         
Sbjct: 265 LPG--YRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGR----- 317

Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           W+ TGD+ +   DG    I R  D++ 
Sbjct: 318 WYVTGDLVERDEDGYFWFIGRADDVII 344

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 62/225 (27%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ E+ + +   A+     G+      A+  E  +E+   + G  +  +    I S+L  
Sbjct: 5   TFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLRL 64

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           ++L+H +  ++   LI                                            
Sbjct: 65  ESLLHCITVSKAKALI-------------------------------------------- 80

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVA-----VIMYTSGSTGLPKGVMITHGNIVATAAA 306
              F+ ++ L  +S  +P  PSQ+ V        +YTSG+TGLPK  +I H      AA 
Sbjct: 81  ---FNLLDPLLTQSSTEP--PSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAG 135

Query: 307 I-KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST 350
                   P   DV    LPL H    +A  IM   G A+ +GST
Sbjct: 136 AYYAFGMRP--EDVVYDCLPLYH----SAGGIM-GVGQALLHGST 173

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 229 VIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGS 286
           ++  E+  +E   G+  G+    V S +  ++L   + +     +   + + ++++TSG+
Sbjct: 104 LVLTESAHAELLDGLDPGVRVINVDSPAWADELAAHRDAEPPFRVADPDDLFMLIFTSGT 163

Query: 287 TGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH---VLELAAESIMLCAGC 343
           +G PK V  TH  + +    +       G  DV    +PL H   V  +A  ++ L AG 
Sbjct: 164 SGDPKAVRCTHRKVASAGVMLAQRF-GLGPDDVCYVSMPLFHSNAV--MAGWAVALAAGA 220

Query: 344 AI 345
           +I
Sbjct: 221 SI 222

Length = 529

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 24/170 (14%)

Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEW----DDPSVGRVGPPVPCCY 507
           C G  L AD  R      GAP+   YG TE  A    S +    ++ +  R G  VP   
Sbjct: 724 CSGEALPADLCREWQQLTGAPLHNLYGPTE--AAVDVSWYPAFGEELAAVR-GSSVP--- 777

Query: 508 IKLVSWDEGGYKTSDK--PMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVD-----ER 557
           I    W+ G      +  P+P    G++ + G  +  GY   P  T+  +  D     ER
Sbjct: 778 IGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGER 837

Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLP 607
            M  + TGD+ +   DG +E + R  D +K++ G+ I LG+I      LP
Sbjct: 838 -M--YRTGDVARWLDDGAVEYLGRSDDQLKIR-GQRIELGEIDRAMQALP 883

Length = 1296

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query: 268 DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327
           D  L + + VA+I +TSG+TGLPKG M  H +I+A   A    +  P   DV++   PLA
Sbjct: 140 DKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLA 199

Query: 328 HVLELAA 334
               L  
Sbjct: 200 FTFGLGG 206

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 8/68 (11%)

Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           G + V G  V A Y+   G+      +D+ G  +F TGD+  +   G + I DR KD++K
Sbjct: 385 GRLKVRGPAVAAAYYRVDGEI-----LDDDG--FFDTGDVATIDAYGYMRITDRSKDVIK 437

Query: 588 LQHGEYIS 595
              GE+IS
Sbjct: 438 -SGGEWIS 444

Length = 542

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 46.3 bits (110), Expect = 6e-05
 Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 16/186 (8%)

Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFS 489
             A++ ++ R  L    R ++CGG  L  D   R   +  GA +   YG TET  G +  
Sbjct: 758 LQALL-QASRVALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTY 816

Query: 490 EWDDPSVGRVGPPV--PCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNN 544
           E  D        P+  P   + L   D         P+P    GE+ +GG  +  GY   
Sbjct: 817 ELSDEERDFGNVPIGQPLANLGLYILD-----HYLNPVPVGVVGELYIGGAGLARGYHRR 871

Query: 545 PGKTSEVYKVD---ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPS 601
           P  T+E +  D     G   + TGD+ +   DG +E + R    VK++ G  I LG+I +
Sbjct: 872 PALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIR-GFRIELGEIEA 930

Query: 602 TTTVLP 607
                P
Sbjct: 931 RLLAQP 936

Length = 3956

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 29/197 (14%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ DR C  A+ L + G        I     +E  IA   C R       +++    
Sbjct: 122 TYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSA 181

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIYFENDGSEKDSGVSGGISN 249
           ++L   +       + C  K +   +AV    KTI  K+++    D S K+ GVS GI  
Sbjct: 182 ESLAQRI-------VDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKN-GVSVGIC- 232

Query: 250 WTVSSFSEVEKLGKR---------SPVDPSLPSQNGVA--------VIMYTSGSTGLPKG 292
            T  +   +++   +           V P+ P++  V          ++YTSGSTG PKG
Sbjct: 233 LTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKG 292

Query: 293 VM-ITHGNIVATAAAIK 308
           V+  T G +V TA   K
Sbjct: 293 VLHTTGGYMVYTATTFK 309

Length = 666

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 45.4 bits (107), Expect = 8e-05
 Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 13/147 (8%)

Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-----GRVGP 501
           +R +  GG+   A   RFI    G    Q YGL+ET   +     DD S+     G VG 
Sbjct: 288 LRLVGYGGSRAIAADVRFIE-ATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR 346

Query: 502 PVPCCYIKLVSWDEGGYKTSD--KPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
           P P   + L + D  G            G + +       GY+NNP +T+EV  +D    
Sbjct: 347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDG--- 402

Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIV 586
            W  TGD+ +   DG   I  R  +++
Sbjct: 403 -WVNTGDLLERREDGFFYIKGRSSEMI 428

Length = 540

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 266 PVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
           P D       +    I++TSG+TG PKGV I+H N+V
Sbjct: 133 PYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLV 169

Length = 503

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 62/236 (26%), Positives = 82/236 (34%), Gaps = 62/236 (26%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E++D     A  L   G     R  I      E  IA   C R           +G 
Sbjct: 75  TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACAR-----------IGA 123

Query: 192 DALIHSL-----NETQVTTLICDSK-----------------QLKKL--SAVS-SSLKTI 226
              IHS+        ++ + I D+K                   K L   A+  S  K  
Sbjct: 124 ---IHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPH 180

Query: 227 KNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGS 286
           K +I   N G        G   +W        E + K  PVD           I+YTSG+
Sbjct: 181 KVLIL--NRGQVPAPLKPGRDLDWA-------ELMAKARPVDCVPVESTDPLYILYTSGT 231

Query: 287 TGLPKGVM-ITHGNIVATAAAIKTLIP-NPGR-----SDV-------YLAYLPLAH 328
           TG PKGV+  T G  VA   +++ +    PG      SDV       Y+ Y PL H
Sbjct: 232 TGKPKGVVRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLH 287

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 37/165 (22%)

Query: 447  IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC---AGSTFSEWDDPSVGRVGP-- 501
            +R++  G   +  ++++      G  I + YG+TET    A +T       +VGR+ P  
Sbjct: 909  LRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGI 968

Query: 502  -----PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF--NNPGKTSEVYKV 554
                 PVP         DEGG            + V G NV  GY    NPG    V + 
Sbjct: 969  EYRLEPVP-------GIDEGG-----------RLFVRGPNVMLGYLRAENPG----VLEP 1006

Query: 555  DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
               G  W+ TGDI  +  +G + I  R K   K+  GE ISL  +
Sbjct: 1007 PADG--WYDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAV 1048

Length = 1140

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           G++ V G  V   YF           VD     WF TGD+  +  DG ++I DR KD++K
Sbjct: 385 GDLQVRGPWVIDRYFRGDASPL----VDG----WFPTGDVATIDADGFMQITDRSKDVIK 436

Query: 588 LQHGEYIS 595
              GE+IS
Sbjct: 437 -SGGEWIS 443

Length = 539

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 20/149 (13%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
           R+R  +  G PL+ +    +    G  I   YG TET A    S       G +G P+P 
Sbjct: 200 RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIGNSPGQKVKPGSMGRPLPG 259

Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVV-------GGFNVTAGYFNNPGKTSEVYKVDERG 558
             + L+  DEG     + P+  GEI +       G      GY  +P KT+  +      
Sbjct: 260 YRVVLLD-DEGK----EIPVTEGEIALDLGDRPIGLM---LGYMGDPEKTAAAF-RGG-- 308

Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
             ++ TGD      DG L  + R  D+ K
Sbjct: 309 --YYRTGDKAYRDEDGYLWFVGRADDVFK 335

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLEL 332
           A+I++TSGS G PKGV+ +H +++A    IKT+       D +++ LPL H   L
Sbjct: 368 ALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPN-DRFMSALPLFHSFGL 421

Length = 718

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 30/194 (15%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY +++++ C F+  L+N   + +    I     +E  IA   C R   T   ++     
Sbjct: 94  TYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSV 153

Query: 192 DALIHSLNETQVTTLICDSKQ---LKKLSAVSSSLK------TIK--NVI-YFEND-GSE 238
            +LI  + ET    LI  +       ++   + +LK      T K  NVI  F ND  SE
Sbjct: 154 KSLIDRI-ETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSE 212

Query: 239 KDSGVSGGISNW--TVSSFSEVEKLGKRS--------PVDPSLPSQNGVAVIMYTSGSTG 288
            D      I     T+S + E++K+ + +        PV+ S P       I+YTSG+TG
Sbjct: 213 SDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHP-----LYILYTSGTTG 267

Query: 289 LPKGVMITHG-NIV 301
             K V+ ++G ++V
Sbjct: 268 NSKAVVRSNGPHLV 281

Length = 647

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 13/80 (16%)

Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI------VATAAAIKTL 310
           E E  G      P  P Q   A + YTSG+TGLPKG +I           ++T A ++  
Sbjct: 136 EPESAGPPIEDPPREPEQ--PAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRH- 192

Query: 311 IPNPGRSDVYLAYLPLAHVL 330
               GR +V L  +PL HV+
Sbjct: 193 ----GRHNVVLGLMPLYHVI 208

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
           +  +      + P   S     +I++TSG++G PKGVM++  N+  TA     L      
Sbjct: 122 DALEPADTPSIPPERVS-----LILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAH 176

Query: 317 SDVYLAYLPLAHVLELA 333
           S  +L   P+ H++ L 
Sbjct: 177 S-SFLCDAPMFHIIGLI 192

Length = 488

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.9 bits (102), Expect = 4e-04
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV 329
           A +  TSGSTGLPK  + T    +A+A  + +L+P     D +L  LPL HV
Sbjct: 138 ATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPF-TAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 46/210 (21%)

Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSL--- 189
           Y  +  RA + A  L+  G     R A++AET  ++  AF  C          Y+ L   
Sbjct: 52  YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFAC---------QYAGLVPV 102

Query: 190 ---------GEDALIHSLNETQVTTLICDSKQLKKL--SAVSSSLKTIKNVIYFENDGSE 238
                    G ++ I                QL+ +  SA  +++ T   ++ + N+ + 
Sbjct: 103 PLPLPMGFGGRESYI---------------AQLRGMLASAQPAAIITPDELLPWVNEATH 147

Query: 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
            +  +       + + F  + +    + V    P+ + +A + Y+SGST  P+GV+ITH 
Sbjct: 148 GNPLLHVL----SHAWFKALPE----ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHR 199

Query: 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAH 328
            ++A   AI          D  +++LP  H
Sbjct: 200 ALMANLRAISHDGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 270  SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
            SLP     A ++YTSGSTG PKGV+++HG I     A+
Sbjct: 2330 SLPQHQ--AYLIYTSGSTGKPKGVVVSHGEIAMHCQAV 2365

Length = 4334

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 24/158 (15%)

Query: 445  GRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEW----DDPSVGRV 499
              +R +  GG  L A+   R +       +   YG TET    T   W    +D     +
Sbjct: 1388 TSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTH--WQCQAEDGERSPI 1445

Query: 500  GPPVP--CCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKTSEVYKV 554
            G P+    C +                +P G   E+ +GG  +  GY   P  T+E +  
Sbjct: 1446 GRPLGNVLCRV---------LDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVP 1496

Query: 555  D---ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQ 589
            D   E G   + TGD  +   DG LE + R    VKL+
Sbjct: 1497 DPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLR 1534

Length = 4334

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 20/78 (25%), Positives = 37/78 (47%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +R    A+GL+  G     R A++ + C E+  A+    +     V I ++L  
Sbjct: 5   TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 192 DALIHSLNETQVTTLICD 209
           + L H L+ +    ++ D
Sbjct: 65  EELAHILDHSGARLIVVD 82

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 21/78 (26%), Positives = 32/78 (41%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ D A  FA+ L   G +   R  +L     E   AF  C +     V +   L  
Sbjct: 12  TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71

Query: 192 DALIHSLNETQVTTLICD 209
             L H L+++    L+ +
Sbjct: 72  QDLEHILDDSGAALLVTE 89

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 10/157 (6%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
           R+R     G  L A+  +      G  I    G TE       +   D   G  G PVP 
Sbjct: 279 RLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPG 338

Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
             ++LV  D G    + +P   GE+++ G +    Y+NN  KT + ++ +     W  +G
Sbjct: 339 YRLRLVG-DGGQDVAAGEP---GELLISGPSSATMYWNNRAKTRDTFQGE-----WTRSG 389

Query: 566 DIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPST 602
           D      DG      R  D++K+  G Y+S  +I S 
Sbjct: 390 DKYVRNDDGSYTYAGRTDDMLKVS-GIYVSPFEIESA 425

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 16/22 (72%), Positives = 19/22 (86%)

Query: 280 IMYTSGSTGLPKGVMITHGNIV 301
           I+YTSGSTG PKGV I+H N+V
Sbjct: 146 IIYTSGSTGNPKGVQISHDNLV 167

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 30/144 (20%)

Query: 453 GGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV------GRVGPPVPCC 506
           GGA LS    R I   +G  + Q +G+ E     T    DD         GR  P  P  
Sbjct: 308 GGARLSETLARRIPAELGCQLQQVFGMAEGLVNYT--RLDDSDERIFTTQGR--PMSPDD 363

Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT------AGYFNNPGKTSEVYKVDERGMC 560
            + +   D  G      P+P+GE+   G  +T       GY+ +P   +  +  D  G  
Sbjct: 364 EVWVA--DADG-----NPLPQGEV---GRLMTRGPYTFRGYYKSPQHNASAF--DANG-- 409

Query: 561 WFYTGDIGQVYPDGCLEIIDRKKD 584
           ++ +GD+  + PDG + ++ R+KD
Sbjct: 410 FYCSGDLVSIDPDGYITVVGREKD 433

Length = 536

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
            A ++YTSG+TGLPKG  I+    + T+  +   +        Y   +PL H       +
Sbjct: 89  PAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTC-MPLYH-----GTA 142

Query: 337 IMLCAGCAIGYGSTL 351
             L     +G G TL
Sbjct: 143 AFLGLCYCLGSGGTL 157

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 16/73 (21%)

Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYK--------------VDERGMCWFYTGDIGQVYPD 573
           GEI + G N+  GY+  P +T+  ++                +  + W  TGD G VY D
Sbjct: 419 GEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDAL-WVRTGDYG-VYFD 476

Query: 574 GCLEIIDRKKDIV 586
           G L I  R KD+V
Sbjct: 477 GELYITGRVKDLV 489

Length = 631

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 14/22 (63%), Positives = 19/22 (86%)

Query: 275  NGVAVIMYTSGSTGLPKGVMIT 296
            + +A ++YTSGSTGLPKGVM+ 
Sbjct: 3869 DNLAYVIYTSGSTGLPKGVMVE 3890

Length = 4334

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 32/231 (13%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           G+ +W +Y E+  RA + A+GL   G      A +      E++I F    +  +  V  
Sbjct: 45  GNRQW-SYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLA 103

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFENDGSEKD 240
             S  +  L    ++ +    I D              + S L T++N+I       E  
Sbjct: 104 LFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNII-VAGQTGEA- 161

Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI 300
                         F  +E   +     P+   +  VA    + GSTG PK +  TH + 
Sbjct: 162 ------------ELFLWLESPAEPVKFPPTKSDE--VAFFQLSGGSTGTPKLIPRTHNDY 207

Query: 301 ---VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELA---AESIMLCAGCAI 345
              V  +  I  L         YL  LP AH   L+   A  +    GC +
Sbjct: 208 YYSVRRSVEICWLTQ----QTRYLCALPAAHNYPLSSPGALGVFYAGGCVV 254

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 27/229 (11%)

Query: 132 TYGEVFDRACSFASGLVNFG--HNVDTRAAILAET----CVEWF-IAFQGCFRQSITVVT 184
           TY EV  R+   A  L+        DT A +L        + W  +A  GC         
Sbjct: 5   TYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWI-WLGLAKLGC-----PTAF 58

Query: 185 IYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVS 244
           + +++   +L+H         L+ D + L+ +  +  +L+ +   +++ +  S       
Sbjct: 59  LNTNIRSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHTS-----PP 113

Query: 245 GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA 304
            G+ +      +  ++    S            A+ +YTSG+TGLPK   I+H  ++   
Sbjct: 114 EGVISLLAKVDAASDEPVPASLRSGVSIRS--TALYIYTSGTTGLPKAARISHLRVLQ-C 170

Query: 305 AAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM 353
           + + +L        VY   LPL H     + +++   GC IG G+TL +
Sbjct: 171 SGMLSLCGVTADDVVYTT-LPLYHS----SGALLGIVGC-IGLGATLVL 213

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 82/363 (22%), Positives = 129/363 (35%), Gaps = 89/363 (24%)

Query: 262 GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI---VATAAAIKTLIPNPGRSD 318
           G  +P  P+   +  VA    + G+TG PK +  TH +    V  +A I           
Sbjct: 178 GLFTPAPPADAGE--VAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQ----QT 231

Query: 319 VYLAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTL 375
           VYL  LP       AA +  L +  A+G    G T+ +    S              P L
Sbjct: 232 VYLCALP-------AAHNFPLSSPGALGVFLAGGTVVLAPDPS--------------PEL 270

Query: 376 MAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLW-DAI 434
               P I +R    V   V                                   LW  A 
Sbjct: 271 --CFPLI-ERHGVTVTALVP------------------PLA------------SLWLQAA 297

Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP 494
             +  RA L   +R +  GGA LSA   R +   +G  + Q +G+ E      ++  DDP
Sbjct: 298 --EWERADLSS-LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLV--NYTRLDDP 352

Query: 495 S---VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKT 548
               +   G P+     ++   D  G      P+  GE+   +  G     GY+  P   
Sbjct: 353 PEIIIHTQGRPL-SPDDEVRVVDADG-----NPVAPGEVGELLTRGPYTIRGYYRAPEHN 406

Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPL 608
           +  +  D  G  ++ +GD+ +  PDG L +  R KD +  + GE I+  ++ +     P 
Sbjct: 407 ARAF--DADG--FYRSGDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPA 461

Query: 609 LFH 611
           +  
Sbjct: 462 VHD 464

Length = 542

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 24/226 (10%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +R+   A    + G       AI  E  + +        R  +    + S L  
Sbjct: 26  TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
               + ++++    LI  + +L    A+      +++ +  + DG               
Sbjct: 86  AEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDG--------------E 131

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM--ITHGNIVATAAAIKT 309
           +  F    +     P  P +  ++    ++Y+SG+TG PKG+   +              
Sbjct: 132 LEGFVGYAEAVAGLPATP-IADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAF 190

Query: 310 LIPNPG-RSD-VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM 353
           L    G RSD VYL+  PL H     A  +++  G     G+ + M
Sbjct: 191 LQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLG-----GTVIVM 231

Length = 511

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 63/192 (32%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           +Y E+ + +  FA+ L + G     R   L     E ++A  G  +       ++S+ G 
Sbjct: 2   SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           + +   L   +   LI  + +L +                                    
Sbjct: 62  EPIRDRLELGEAKVLIT-TPELYE------------------------------------ 84

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA---TAAAIK 308
                      +  P DP+L        + +TSG+TG PKGV+  H  +VA   TA  + 
Sbjct: 85  -----------RTDPEDPAL--------LHFTSGTTGKPKGVLHVHRAVVAHYATARYVL 125

Query: 309 TLIPNPGRSDVY 320
            L P+    DVY
Sbjct: 126 DLRPD----DVY 133

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 42/151 (27%), Positives = 54/151 (35%), Gaps = 30/151 (19%)

Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF---SEW-DDP-SVGRV-- 499
           +   I   AP     +  +    G  I + Y  TE   G T     EW   P +VGR   
Sbjct: 277 LEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEG-LGFTACDSEEWLAHPGTVGRAMF 335

Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG----YFNNPGKTSEVYKVD 555
           G             D+ G       +P GE   G      G    Y N+P KT+E     
Sbjct: 336 GDLHIL--------DDDG-----AELPPGEP--GTIWFEGGRPFEYLNDPAKTAEAR--H 378

Query: 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
             G  W   GDIG V  DG L + DR   ++
Sbjct: 379 PDGT-WSTVGDIGYVDEDGYLYLTDRAAFMI 408

Length = 511

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP-SVGRVGPPV 503
             +R +   G PL+ +   +    +G PI   +  TET A    +    P   G +G P+
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266

Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEIVV--GGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
           P     ++  D  G      P   GE+ +  G  ++  GY  N  + +  +        W
Sbjct: 267 PGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVDG-----W 321

Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVK 587
           + TGD+     DG    + R  D++K
Sbjct: 322 YLTGDLAYRDEDGYFWFVGRADDVIK 347

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 35/167 (20%), Positives = 55/167 (32%), Gaps = 31/167 (18%)

Query: 132  TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
            +Y E+  RA   A  L+  G   D    +  E  +E  +      +     V +     E
Sbjct: 3084 SYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPE 3143

Query: 192  DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
            + L           ++ DS     LS     L   + V   +    ++            
Sbjct: 3144 ERL---------AYMLEDSGAQLLLSQSHLRLPLAQGV---QVLDLDRGD---------- 3181

Query: 252  VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
                   E   + +P          +A ++YTSGSTG PKGV I H 
Sbjct: 3182 -------ENYAEANP--AIRTMPENLAYVIYTSGSTGKPKGVGIRHS 3219

Length = 5163

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 42/200 (21%), Positives = 77/200 (38%), Gaps = 12/200 (6%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY ++ DRA   +  L   G  +  R A +A        A+ G         T+   L  
Sbjct: 41  TYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP 100

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS--N 249
           + +   +N  +   +I D   +  L  ++  L +++  +   +      + +   ++   
Sbjct: 101 EQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEE 160

Query: 250 WTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-GNIVATAAAIK 308
           W     +E +        D     +N  A + YTSG+TG PKGV+ +H  N++    A  
Sbjct: 161 W----IAEADGDFAWKTFD-----ENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANN 211

Query: 309 TLIPNPGRSDVYLAYLPLAH 328
                   +D  L  +PL H
Sbjct: 212 GDALGTSAADTMLPVVPLFH 231

Length = 542

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 25/175 (14%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ + +  FA+ L   G     R  I      E + A  G  +    V  ++ +  E
Sbjct: 75  TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFME 134

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           +A+   L +++   LI     L++    +  L ++K+V+    D  E            T
Sbjct: 135 EAVRDRLEDSEAKVLITTPALLERK--PADDLPSLKHVLLVGEDVEEGPG---------T 183

Query: 252 VSSFSEVEKLGKR---SPVDPSLPSQNGVAVIMYTSGSTGLPKGV------MITH 297
           +   + +E+          D         A++ YTSGSTG PKGV      M+ H
Sbjct: 184 LDFNALMEQASDEFDIEWTDREDG-----AILHYTSGSTGKPKGVLHVHNAMLQH 233

Length = 570

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 15/73 (20%)

Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVY--KVDER------------GMCWFYTGDIGQVYPD 573
           GEI + G N+  GY+  P +T   +  K+  R               W  TGD+G VY D
Sbjct: 430 GEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLG-VYLD 488

Query: 574 GCLEIIDRKKDIV 586
           G L I  R  D++
Sbjct: 489 GELYITGRIADLI 501

Length = 612

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	649
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.98
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.97
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.97
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.94
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.93
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.93
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.86
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.79
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.51
PRK09188	365	serine/threonine protein kinase; Provisional	99.17
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.64
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	97.82
PLN02249	597	indole-3-acetic acid-amido synthetase	97.76
PLN02247	606	indole-3-acetic acid-amido synthetase	97.63
PLN02620	612	indole-3-acetic acid-amido synthetase	97.52
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	95.6
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	94.01
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	88.18
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	87.94

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.4e-98  Score=754.23  Aligned_cols=554  Identities=51%  Similarity=0.848  Sum_probs=522.9

Q ss_pred             CCCCccccccCCCCcccccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHH
Q 006354           58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF  137 (649)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~  137 (649)
                      +.+||++....+   +...++++..|+.++|++.++++.++.|+++|++++.|.+.+.||+.|+++++|+|.|+||.|+.
T Consensus        20 ~~p~Rnv~~~~~---L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~   96 (678)
T KOG1180|consen   20 TAPYRNVRSFDG---LVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVY   96 (678)
T ss_pred             CccccccccCCC---ccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHH
Confidence            788888876444   77889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCE-EEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHH
Q 006354          138 DRACSFASGLVNFGHNVDTR-AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL  216 (649)
Q Consensus       138 ~~~~~lA~~L~~~Gv~~gd~-V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l  216 (649)
                      +++.++|++|.++|++++++ ++|+++.+.+|+++++||++.+..+|.++.+++.+.+.|.|++++++.+||+.+.++++
T Consensus        97 ~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl  176 (678)
T KOG1180|consen   97 ERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKL  176 (678)
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHH
Confidence            99999999999999998777 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCccEEEEecCCCCCcc-CCCCC-CCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEE
Q 006354          217 SAVSSSLKTIKNVIYFENDGSEKD-SGVSG-GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM  294 (649)
Q Consensus       217 ~~~~~~~~~~~~ii~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~  294 (649)
                      .......+.+++||+++..+.... ..+.. ..+++.+++++++++.++....++.++.|+|+|+|||||||||.||||+
T Consensus       177 ~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVm  256 (678)
T KOG1180|consen  177 KAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVM  256 (678)
T ss_pred             HHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEE
Confidence            999899999999999997543331 11211 3367899999999999998877778889999999999999999999999


Q ss_pred             echHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecce
Q 006354          295 ITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT  374 (649)
Q Consensus       295 ~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t  374 (649)
                      ++|+|+++.+.......+.+++.|+++.|+||+|++.+...+.++..|+++.+.+|.++.+.++.+.+++.+++..+|||
T Consensus       257 l~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPT  336 (678)
T KOG1180|consen  257 LTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPT  336 (678)
T ss_pred             EecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccch
Confidence            99999999999998887789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecC
Q 006354          375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG  454 (649)
Q Consensus       375 ~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG  454 (649)
                      +|.++|++|+++.+.+.+++...+.+.+.+|+.++.+++..+.     +++..++++|.++|+++|...|++||++++||
T Consensus       337 iM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~-----~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGG  411 (678)
T KOG1180|consen  337 IMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIE-----RNGPGSPLLDALVFKKIRALLGGNLRYILSGG  411 (678)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh-----ccCCchhhHHHHHHHHHHHHhCCceEEEEeCC
Confidence            9999999999999999999999999999999999999999886     36788999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHhhcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcc
Q 006354          455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG  534 (649)
Q Consensus       455 ~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g  534 (649)
                      +||+++.++|+..++.|++.++||.||+|+.++...+.+...+.+|.|+++++++++|+++++|.....| +.|||+|+|
T Consensus       412 apLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P-PrGEI~i~G  490 (678)
T KOG1180|consen  412 APLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP-PRGEILIGG  490 (678)
T ss_pred             CCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC-CCceEEecC
Confidence            9999999999999999999999999999999999999999999999999999999999999999887777 899999999


Q ss_pred             ccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceE
Q 006354          535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIR  614 (649)
Q Consensus       535 ~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~  614 (649)
                      ++++.|||+||++|++.|.. .+|++||+|||+|++.+||+|.|++|++|++|+++||+|+++.||++|..+|.|. +.+
T Consensus       491 ~~vt~gY~kn~ekT~e~ft~-~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~-NIC  568 (678)
T KOG1180|consen  491 PNVTMGYYKNEEKTKEDFTV-EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVD-NIC  568 (678)
T ss_pred             CccChhhhCChhhhhhhcee-cCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchh-heE
Confidence            99999999999999999984 4766799999999999999999999999999999999999999999999999999 999


Q ss_pred             EEecCCCC
Q 006354          615 LWRNGPMK  622 (649)
Q Consensus       615 V~g~~~~~  622 (649)
                      |++++...
T Consensus       569 vyAd~~~s  576 (678)
T KOG1180|consen  569 VYADSNKS  576 (678)
T ss_pred             Eecccccc
Confidence            99988555

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=9.1e-87  Score=702.83  Aligned_cols=524  Identities=36%  Similarity=0.610  Sum_probs=460.8

Q ss_pred             CCCCccccccCCCCcccccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHH
Q 006354           58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF  137 (649)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~  137 (649)
                      +..|+.....+.  +......++..|+++.|++.++++|+.++++++...        |+.       +.|+|+||.|+.
T Consensus        53 ~~~~~s~~~~~~--~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~--------~~~-------~~~~~~tY~q~~  115 (691)
T KOG1256|consen   53 DGSRRSAVLPRE--ELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIV--------DGK-------GPYEWLTYKQVY  115 (691)
T ss_pred             CCceeeeeccCC--CCCCCCCCCcccHHHHhhcchhccCCCCceeEEecc--------cCC-------CCcEEEEHHHHH
Confidence            345555554322  123344567899999999999999999999998643        343       788999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEEC-chhHHHH
Q 006354          138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD-SKQLKKL  216 (649)
Q Consensus       138 ~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~l  216 (649)
                      +++.++|.+|+++|+++++.|+|++-|++||+++.+||...|.++|||+.+++++.+++|++++++.++|++ ++....+
T Consensus       116 e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~l  195 (691)
T KOG1256|consen  116 ERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKL  195 (691)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 6677777


Q ss_pred             HHhhc--cCCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCC-CCCCCCCeEEEEeecCCCCCcceE
Q 006354          217 SAVSS--SLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP-SLPSQNGVAVIMYTSGSTGLPKGV  293 (649)
Q Consensus       217 ~~~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGSTG~PKgV  293 (649)
                      .+...  ..+.++.+|.+++........  ....++.+++|+++.+.+......+ .+++|+|+|.|+|||||||.||||
T Consensus       196 l~~~~~~~~~~LK~iI~~~~~~~~~~~~--~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGV  273 (691)
T KOG1256|consen  196 LEIKENDSLPSLKAIIQLDEPSDELKEK--AENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGV  273 (691)
T ss_pred             HhhcccccCccceeEEEecCCchhhhhh--hhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceE
Confidence            77665  488999999999886543221  2223688999999999998776666 489999999999999999999999


Q ss_pred             EechHHHHHHHHHH---HhhCC--CCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEe--CCcccccccchhhccCccc
Q 006354          294 MITHGNIVATAAAI---KTLIP--NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKG  366 (649)
Q Consensus       294 ~~th~~l~~~~~~~---~~~~~--~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~--~~~~~l~~~~~~~~~~~~~  366 (649)
                      |+||+|+++.+...   .....  ....+|++++|+||+|++........++.|+++++  +|+..+.+.          
T Consensus       274 MLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~d----------  343 (691)
T KOG1256|consen  274 MLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDD----------  343 (691)
T ss_pred             EEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHH----------
Confidence            99999999976542   22221  22336999999999999999998888899999999  777777777          


Q ss_pred             cceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-hhhhccccccccchhhhHHHHHHHHHHHHhCC
Q 006354          367 DVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRL-AAVEGSWFGAWGLERMLWDAIVFKSVRAVLGG  445 (649)
Q Consensus       367 ~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  445 (649)
                       +++.+||.+.+||.+|+++.+.+.+....++.+++++|++|..+++ ..+. .+..+.  ..++||+++|++++..+|+
T Consensus       344 -lk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~-~G~~~~--~~~~~D~lVf~KI~~~LGg  419 (691)
T KOG1256|consen  344 -LKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLM-KGKSRS--RDRFADKLVFHKIKQSLGG  419 (691)
T ss_pred             -HHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhh-CCCCcc--cchHHHHHHHHHHHHHhcC
Confidence             9999999999999999999999999999999999999999999999 4443 222222  6889999999999999999


Q ss_pred             ceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCC
Q 006354          446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM  525 (649)
Q Consensus       446 ~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g  525 (649)
                      ++|.+++|++|+++++..|++..+|++|+++||+|||++.++.....+...+++|.|+|+++++++|+++.++.   ..+
T Consensus       420 ~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~---a~~  496 (691)
T KOG1256|consen  420 NVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYD---ADG  496 (691)
T ss_pred             ceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcC---cCC
Confidence            99999999999999999999999999999999999999877777777778899999999999999999999985   456


Q ss_pred             CccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhcc
Q 006354          526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTV  605 (649)
Q Consensus       526 ~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~  605 (649)
                      ..|||||+|++++.|||+||++|+++|+  .|  ||++|||+|+|+++|.|+|+||++++||+++||+|.|+.||+++.+
T Consensus       497 ~~GEIcirG~~Vf~GYyK~p~~T~e~id--eD--GWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~  572 (691)
T KOG1256|consen  497 SKGEICVRGPNVFMGYYKDPEKTAEAID--ED--GWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKR  572 (691)
T ss_pred             CcceEEEecchhceeccCChHHHhhhhc--cc--cccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhc
Confidence            6899999999999999999999999998  77  9999999999999999999999999999999999999999999999


Q ss_pred             CcccccceEEEecCCCC
Q 006354          606 LPLLFHHIRLWRNGPMK  622 (649)
Q Consensus       606 ~p~V~~~~~V~g~~~~~  622 (649)
                      .+.|. +.+|+|.+...
T Consensus       573 ~~~V~-qi~V~g~s~~~  588 (691)
T KOG1256|consen  573 SLPVQ-QIFVLGDSLRS  588 (691)
T ss_pred             CCceE-EEEEECCcchh
Confidence            99999 99999998444

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=2.5e-82  Score=720.38  Aligned_cols=559  Identities=72%  Similarity=1.211  Sum_probs=477.1

Q ss_pred             CCccccccCCCCcccccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHH
Q 006354           60 EPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDR  139 (649)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~  139 (649)
                      .||+...    +.....++++..|+.++|+++++++||++|+.++..++.+.+...+|+.|++.+.++|+++||+||.++
T Consensus        40 ~~r~~~~----~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~  115 (696)
T PLN02387         40 AIRNARF----PELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFER  115 (696)
T ss_pred             ceecCcc----ccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHH
Confidence            4555442    224555678889999999999999999999988765544444444677777778899999999999999


Q ss_pred             HHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHh
Q 006354          140 ACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAV  219 (649)
Q Consensus       140 ~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~  219 (649)
                      ++++|++|.++|+++||+|+|+++|+++|+++++||+++|+++||+++.++++++.++|++++++++|++.+..+.+..+
T Consensus       116 v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~  195 (696)
T PLN02387        116 VCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDI  195 (696)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888888887


Q ss_pred             hccCCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHH
Q 006354          220 SSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN  299 (649)
Q Consensus       220 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~  299 (649)
                      ...++.++.++.+++......... ....++.+.+++++...+.........+.++|+++|+|||||||.||||++||+|
T Consensus       196 ~~~~~~l~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~  274 (696)
T PLN02387        196 SSQLETVKRVIYMDDEGVDSDSSL-SGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGN  274 (696)
T ss_pred             hhccCCceEEEEECCCCchhhhhh-hccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHH
Confidence            777788899998875432111000 0122456778998887655433334456789999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEec
Q 006354          300 IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAV  379 (649)
Q Consensus       300 l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~  379 (649)
                      +++.+......+..+.++|++++++|++|++++...+.++..|+++.++++..+.+....+...+..++++++||+++++
T Consensus       275 l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~v  354 (696)
T PLN02387        275 IVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAV  354 (696)
T ss_pred             HHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEeh
Confidence            99988887665436788999999999999999988777899999999988776666433334455667999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCH
Q 006354          380 PAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA  459 (649)
Q Consensus       380 P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~  459 (649)
                      |.+++.+.+.........+.+++.+|+++...++..+...+++..+..+++||.++++++++.+|+++|.+++||+++++
T Consensus       355 P~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~  434 (696)
T PLN02387        355 PAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSG  434 (696)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCH
Confidence            99999999988777778888999999999999998887666666677889999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccc
Q 006354          460 DSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA  539 (649)
Q Consensus       460 ~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~  539 (649)
                      ++.++++..+|++++++||+||+++.++.....+...+++|+|+|+++++|+|++++++.....+++.|||+|+|++++.
T Consensus       435 ~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~  514 (696)
T PLN02387        435 DTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTL  514 (696)
T ss_pred             HHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccc
Confidence            99999998889999999999999887777666666678999999999999999777776543456678999999999999


Q ss_pred             cccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecC
Q 006354          540 GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNG  619 (649)
Q Consensus       540 gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~  619 (649)
                      |||++|+.|++.|..+++|.|||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||.|. +|+|+|++
T Consensus       515 GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~-~~~V~g~~  593 (696)
T PLN02387        515 GYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVD-NIMVHADP  593 (696)
T ss_pred             hhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCee-EEEEEecC
Confidence            99999999999995335544699999999999999999999999999997899999999999999999999 99999988


Q ss_pred             -CCCcc
Q 006354          620 -PMKLA  624 (649)
Q Consensus       620 -~~~~~  624 (649)
                       +....
T Consensus       594 ~~~~~~  599 (696)
T PLN02387        594 FHSYCV  599 (696)
T ss_pred             CcceEE
Confidence             44333

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=3.1e-78  Score=649.36  Aligned_cols=497  Identities=31%  Similarity=0.495  Sum_probs=411.9

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 006354           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (649)
Q Consensus        79 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (649)
                      ....++..++.++++.+|+.+|+....                   .+.++.+||+|+.+++.++|++|+++|+..||+|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~a~~~~~-------------------~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrv   73 (613)
T COG1022          13 AEIHTLPKRLAERVKDRPDGVALMYKE-------------------LGGWEAITYRELYERVRALASGLLSLGIPAGDRV   73 (613)
T ss_pred             hhcccHHHHHHHHhhcCCcceeEeeec-------------------CCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            334789999999999999988887642                   3556789999999999999999999999779999


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh-HHHHHHhhccCCCccEEEEecCCCC
Q 006354          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-LKKLSAVSSSLKTIKNVIYFENDGS  237 (649)
Q Consensus       159 ~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~l~~~~~~~~~~~~ii~~~~~~~  237 (649)
                      +|++.|+++|+++.+||+.+|++.||++++++++++.++|++++++++|++... .+.+..+....+.+...+...+...
T Consensus        74 ai~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (613)
T COG1022          74 AIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVR  153 (613)
T ss_pred             EEEeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhh
Confidence            999999999999999999999999999999999999999999999999999854 4444444443332222221111000


Q ss_pred             Ccc---CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCC-
Q 006354          238 EKD---SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN-  313 (649)
Q Consensus       238 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~-  313 (649)
                      ...   ..............+ ..  ..........++.++|+|.|+|||||||.|||||+||+|+++++......+ . 
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-~~  229 (613)
T COG1022         154 EAVEAKALVLEVFPDEGISLF-LI--DSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-PP  229 (613)
T ss_pred             hccchhhccccccccccchhh-hh--cccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-CC
Confidence            000   000000000011111 11  111111122577899999999999999999999999999999999999998 6 


Q ss_pred             CCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEe-CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHH
Q 006354          314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY-GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (649)
Q Consensus       314 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~-~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  391 (649)
                      .+++|++++++|++|++.+.. ....+..|+++.+ .++..+.+.           +++++||.+++||++|+.+.+.+.
T Consensus       230 ~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~d-----------l~~~rPt~m~~VPRvwE~i~~~I~  298 (613)
T COG1022         230 IGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLED-----------LKEVRPTVMIGVPRVWEKVYKGIM  298 (613)
T ss_pred             CCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHH-----------HHHhCCeEEeechHHHHHHHHHHH
Confidence            889999999999999999987 5566777777766 777778777           999999999999999999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHhhhhcccc-ccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC
Q 006354          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWF-GAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG  470 (649)
Q Consensus       392 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~  470 (649)
                      +++...+..++.+|++++............ ++.....-..|+++|+|+++.+|+++|++++||+++++++..+++.. |
T Consensus       299 ~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-G  377 (613)
T COG1022         299 EKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-G  377 (613)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-C
Confidence            999999999999999998775432221111 11122233589999999999999999999999999999999999986 8


Q ss_pred             CccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchh
Q 006354          471 APIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE  550 (649)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~  550 (649)
                      +++.++||+|||+++++.+++.....+++|+|+|+++++|+|              .|||+||||.+|.|||++|++|++
T Consensus       378 i~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Tae  443 (613)
T COG1022         378 IPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATAE  443 (613)
T ss_pred             CCeEEEecccccccceEEccccCcccCCcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHhh
Confidence            999999999999999999999999999999999999999997              499999999999999999999999


Q ss_pred             hhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354          551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       551 ~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                      +|+  +|  |||+|||+|.+|++|+|.|+||++|+||+++|++|+|+.||+.+.++|.|. +++|+|..+...++.+..
T Consensus       444 af~--~D--GWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~-qi~vvg~~k~~~~AlIvp  517 (613)
T COG1022         444 AFT--ED--GWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIE-QICVVGDDKKFLVALIVP  517 (613)
T ss_pred             hcc--cc--CCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCee-EEEEEecCCcceEEEEeC
Confidence            998  67  999999999999999999999999999999999999999999999999999 999999877777755543

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.1e-77  Score=671.36  Aligned_cols=513  Identities=21%  Similarity=0.346  Sum_probs=425.6

Q ss_pred             CCCCccccccCCCCcccccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHH
Q 006354           58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF  137 (649)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~  137 (649)
                      +..||.......      .++....|+.++|.++++++|+++|+++.+          +|.        .++++||+||.
T Consensus        43 ~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~----------~g~--------~~~~~Ty~el~   98 (746)
T PTZ00342         43 SSVYCMKDHKKK------SSLYVYKHIMKLLLEKYKLNNNKIAIVEHS----------CGE--------PQNYITYGNFF   98 (746)
T ss_pred             CCceecCchhhc------ccccccchHHHHHHHHHhhcCCceeEeccC----------CCC--------CceeeeHHHHH
Confidence            567774433222      566778999999999999999999998531          221        24689999999


Q ss_pred             HHHHHHHHHHHH---CCCCCC-----------CEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCc
Q 006354          138 DRACSFASGLVN---FGHNVD-----------TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQV  203 (649)
Q Consensus       138 ~~~~~lA~~L~~---~Gv~~g-----------d~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~  203 (649)
                      ++++++|++|.+   +|+++|           |+|+|+++|+++|+++++||+++|++.||+++.++++++.++|+++++
T Consensus        99 ~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~  178 (746)
T PTZ00342         99 KKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKL  178 (746)
T ss_pred             HHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCC
Confidence            999999999997   499999           999999999999999999999999999999999999999999999999


Q ss_pred             eEEEECchhHHHHHHhhccCCCccEEEEecCCCCCc-----------------cCC------------------------
Q 006354          204 TTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK-----------------DSG------------------------  242 (649)
Q Consensus       204 ~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~-----------------~~~------------------------  242 (649)
                      +++|++.+..+.+.++...++.++.+++++......                 ...                        
T Consensus       179 ~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (746)
T PTZ00342        179 EWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPL  258 (746)
T ss_pred             CEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999888888887777788899999887532110                 000                        


Q ss_pred             ------------CC--CCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHH
Q 006354          243 ------------VS--GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK  308 (649)
Q Consensus       243 ------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~  308 (649)
                                  +.  ....+....+++++..... .........++|+|+|+|||||||.||||++||+|+++.+....
T Consensus       259 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~  337 (746)
T PTZ00342        259 EYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKT-TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLC  337 (746)
T ss_pred             ccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcc-cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHh
Confidence                        00  0001223345555544321 12223445789999999999999999999999999999887665


Q ss_pred             hhC-CCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEe--CCcccccccchhhccCccccceeecceEEEechHHHHH
Q 006354          309 TLI-PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR  385 (649)
Q Consensus       309 ~~~-~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~  385 (649)
                      ... ....+.|++++++|++|++++...+.+++.|+++++  .++..+.+.           +++++||+++++|.+|++
T Consensus       338 ~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~d-----------i~~~~pT~~~~VP~v~~~  406 (746)
T PTZ00342        338 KHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKD-----------IYNSKGNILAGVPKVFNR  406 (746)
T ss_pred             hcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHH-----------HHHhCCcEEEchHHHHHH
Confidence            432 023356899999999999999888888999999998  445566666           999999999999999999


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHH--HHHHHHHHhCCceEEEEecCCCCCHHHHH
Q 006354          386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI--VFKSVRAVLGGRIRFMICGGAPLSADSQR  463 (649)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~  463 (649)
                      +.+.+.......+.+++.+|++++..+.....       +..+++++.+  +++++|+.+|++||.+++||+++++++.+
T Consensus       407 i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~  479 (746)
T PTZ00342        407 IYTNIMTEINNLPPLKRFLVKKILSLRKSNNN-------GGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAE  479 (746)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhc-------CCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHH
Confidence            99988888877788899999999988876433       2234566665  79999999999999999999999999999


Q ss_pred             HHHhhcCCccccccCcccccccccccCCCCCCCCccCCCc-ccceEEEEecCCCCcccCCCCCCccEEEEcccccccccc
Q 006354          464 FINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF  542 (649)
Q Consensus       464 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~  542 (649)
                      +|+..+|++++++||+||+++.++.....+...+++|+|+ |+++++|+|+++...   ...++.|||+|+|++++.|||
T Consensus       480 ~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~---~~~~~~GEl~vrGp~v~~GY~  556 (746)
T PTZ00342        480 ELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKA---TDTLPKGELLIKSDSIFSGYF  556 (746)
T ss_pred             HHHHhcCCCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEeccccccc---CCCCCceEEEEecCccccccc
Confidence            9999889999999999999887776666666779999998 999999998665332   234568999999999999999


Q ss_pred             CCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCC
Q 006354          543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPM  621 (649)
Q Consensus       543 ~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~  621 (649)
                      ++|+.|+++|.  .|  |||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||.|. +|+|+|+...
T Consensus       557 ~~pe~T~~~f~--~d--GW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~-~~~VvG~~~~  630 (746)
T PTZ00342        557 LEKEQTKNAFT--ED--GYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFIN-FCVVYGDDSM  630 (746)
T ss_pred             CChhhhhhhcC--cC--CcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCcc-EEEEEccCCc
Confidence            99999999996  56  899999999999999999999999999988899999999999999999999 9999997633

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=5.3e-76  Score=665.29  Aligned_cols=529  Identities=31%  Similarity=0.567  Sum_probs=420.6

Q ss_pred             CCCCccccccCCCCcccccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHH
Q 006354           58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF  137 (649)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~  137 (649)
                      ++.+|.......++    .+.+...|+.++|+++++++|+++|+++++..        ++.      .++++++||+||.
T Consensus        25 ~~~~~~~~~~~~~~----~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~--------~~~------~~~~~~~Ty~el~   86 (666)
T PLN02614         25 GPVYRSIFAKDGFP----NPIEGMDSCWDVFRMSVEKYPNNPMLGRREIV--------DGK------PGKYVWQTYQEVY   86 (666)
T ss_pred             CCcccCcccccccC----CCCCCCCcHHHHHHHHHHhCCCCCeEEEeccc--------CCC------CCCcEEeEHHHHH
Confidence            45555544333321    23456679999999999999999999864211        221      1345679999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHH
Q 006354          138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLS  217 (649)
Q Consensus       138 ~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~  217 (649)
                      ++++++|++|+++|+++||+|+|+++|+++|++++|||+++|+++||+++.++++++.+++++++++++|++.+....+.
T Consensus        87 ~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~  166 (666)
T PLN02614         87 DIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELF  166 (666)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987665554


Q ss_pred             Hhhcc-CCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEec
Q 006354          218 AVSSS-LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT  296 (649)
Q Consensus       218 ~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~t  296 (649)
                      ..... .+.++.++.+++.......  .....++...+++++...+.....+.....++|+|+|+|||||||.||||++|
T Consensus       167 ~~~~~~~~~l~~vi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lt  244 (666)
T PLN02614        167 KTCPNSTEYMKTVVSFGGVSREQKE--EAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS  244 (666)
T ss_pred             HhcccccccceEEEEeCCCChHHhh--hhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEe
Confidence            33221 2236677776532110000  00011334667888766543222222345689999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhC----CCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEe--CCcccccccchhhccCcccccee
Q 006354          297 HGNIVATAAAIKTLI----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSV  370 (649)
Q Consensus       297 h~~l~~~~~~~~~~~----~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~--~~~~~l~~~~~~~~~~~~~~i~~  370 (649)
                      |+|+++.+.+....+    ..+.++|++++++|++|++++...+.++..|+++++  +++..+.+.           +++
T Consensus       245 h~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~-----------i~~  313 (666)
T PLN02614        245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIED-----------LGE  313 (666)
T ss_pred             cHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHH-----------HHH
Confidence            999998877665443    146789999999999999998766677889999988  344555555           999


Q ss_pred             ecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEE
Q 006354          371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM  450 (649)
Q Consensus       371 ~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i  450 (649)
                      ++||+++++|++|+.+...+.......+.+++.+|+++...++..+..+.  ......++++.++++++++.+|++||.+
T Consensus       314 ~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lg~~lr~~  391 (666)
T PLN02614        314 LKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQ--SHVEASPLCDKLVFNKVKQGLGGNVRII  391 (666)
T ss_pred             hCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC--CCcccchHHHHHHHHHHHHHhCCcEEEE
Confidence            99999999999999999887766666677788899999888776654321  1223467889999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCC-CCCCccCCCcccceEEEEecCCCCcccCCCCCCccE
Q 006354          451 ICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE  529 (649)
Q Consensus       451 ~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GE  529 (649)
                      ++||+++++++.++++...+++++++||+||+++.++.....+ ...+++|+|+||++++|+|.++++... +++|+.||
T Consensus       392 ~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~-~~~g~~GE  470 (666)
T PLN02614        392 LSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDA-LASTPRGE  470 (666)
T ss_pred             EEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCccc-CCCCCCce
Confidence            9999999998766655543689999999999987655443332 346899999999999999855443222 67899999


Q ss_pred             EEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCccc
Q 006354          530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLL  609 (649)
Q Consensus       530 l~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V  609 (649)
                      |+|+|++++.|||++|+.|++.|   .+  |||+|||+|++|+||+|+|+||+||+||+++|++|+|.|||++|.+||.|
T Consensus       471 l~vrGp~v~~GY~~~pe~T~~~f---~d--Gw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V  545 (666)
T PLN02614        471 ICIRGKTLFSGYYKREDLTKEVL---ID--GWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAV  545 (666)
T ss_pred             EEEcCCcccccccCCHHHhhhhh---cc--CCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCe
Confidence            99999999999999999999999   56  89999999999999999999999999998789999999999999999999


Q ss_pred             ccceEEEecCC-CCcccc
Q 006354          610 FHHIRLWRNGP-MKLASS  626 (649)
Q Consensus       610 ~~~~~V~g~~~-~~~~~~  626 (649)
                      . +|+|+|+++ +.+...
T Consensus       546 ~-~~~V~g~~~~~~l~al  562 (666)
T PLN02614        546 D-SVWVYGNSFESFLVAI  562 (666)
T ss_pred             e-EEEEEecCCcceEEEE
Confidence            9 999999984 454433

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=4.8e-75  Score=657.99  Aligned_cols=521  Identities=31%  Similarity=0.564  Sum_probs=421.7

Q ss_pred             CCCCccccccCCCCcccccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHH
Q 006354           58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF  137 (649)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~  137 (649)
                      ++.+|+......+.   . ..+...|++++|+++++++|+++|++.+...        +++      .++++++||+||.
T Consensus        23 ~~~~~~~~~~~~~~---~-~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~--------~~~------~g~~~~~Ty~el~   84 (660)
T PLN02861         23 GPVYRSIYAKDGLL---D-LPADIDSPWQFFSDAVKKYPNNQMLGRRQVT--------DSK------VGPYVWLTYKEVY   84 (660)
T ss_pred             CCcccccccccccc---c-CCCCCCCHHHHHHHHHHhCCCCCeEEEEecC--------CCC------CCCceEEEHHHHH
Confidence            66666655444422   1 1255679999999999999999999875211        222      2455689999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHH
Q 006354          138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLS  217 (649)
Q Consensus       138 ~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~  217 (649)
                      ++++++|++|+++|+++||+|+|+++|+++|++++|||+++|+++||+++.++.+++.++|++++++++|++.+..+.+.
T Consensus        85 ~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~  164 (660)
T PLN02861         85 DAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSIL  164 (660)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988776665


Q ss_pred             HhhccC-CCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEec
Q 006354          218 AVSSSL-KTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT  296 (649)
Q Consensus       218 ~~~~~~-~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~t  296 (649)
                      .+.... +.++.++.+++.......  .....+....+++++...+... .......++|+|+|+|||||||.||||++|
T Consensus       165 ~~~~~~~~~l~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lt  241 (660)
T PLN02861        165 SCLPKCSSNLKTIVSFGDVSSEQKE--EAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILT  241 (660)
T ss_pred             HhhhhCCCCCEEEEEECCCChhhhh--hhhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEe
Confidence            544433 257777777543211000  0001124456788776544321 122345689999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCC----CCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEe--CCcccccccchhhccCcccccee
Q 006354          297 HGNIVATAAAIKTLIP----NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSV  370 (649)
Q Consensus       297 h~~l~~~~~~~~~~~~----~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~--~~~~~l~~~~~~~~~~~~~~i~~  370 (649)
                      |+++++.+......+.    .+.++|++++++|++|++++...+.+++.|+++++  +++..+.+.           +++
T Consensus       242 h~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~-----------i~~  310 (660)
T PLN02861        242 NRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMED-----------VQA  310 (660)
T ss_pred             cHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHH-----------HHH
Confidence            9999998877665541    14678999999999999998776678999999988  445555555           999


Q ss_pred             ecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEE
Q 006354          371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM  450 (649)
Q Consensus       371 ~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i  450 (649)
                      ++||+++++|++|+.+.+.+..+....+.+++.+|+++...++..+..+.  ......+.+++++++++|+.+|+++|.+
T Consensus       311 ~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~lg~~lr~~  388 (660)
T PLN02861        311 LKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGL--KQEEASPRLDRLVFDKIKEGLGGRVRLL  388 (660)
T ss_pred             hCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCC--CCcCccHhHHHHHHHHHHHHhCCcEEEE
Confidence            99999999999999999988888888888999999999999887765321  1122356788899999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhcC-CccccccCcccccccccccCCCC-CCCCccCCCcccceEEEEecCCCCcccCCCCCCcc
Q 006354          451 ICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG  528 (649)
Q Consensus       451 ~~gG~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~G  528 (649)
                      ++||+++++++.++++ .++ .+++++||+||+++.++...... ...+++|+|+|+++++|+|.++.++.. +++++.|
T Consensus       389 ~~Ggapl~~~~~~~~~-~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~-~~~~~~G  466 (660)
T PLN02861        389 LSGAAPLPRHVEEFLR-VTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDA-LSDVPRG  466 (660)
T ss_pred             EECCCCCCHHHHHHHH-HHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCccc-CCCCCce
Confidence            9999999999876555 455 47999999999987665443322 346899999999999999854433221 3456789


Q ss_pred             EEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcc
Q 006354          529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPL  608 (649)
Q Consensus       529 El~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~  608 (649)
                      ||+|+|++++.|||++|+.|++.|   .+  |||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||.
T Consensus       467 Ei~vrGp~v~~GY~~~pe~T~~~f---~d--Gw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~  541 (660)
T PLN02861        467 EICLRGNTLFSGYHKRQDLTEEVL---ID--GWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPL  541 (660)
T ss_pred             eEEEcCCcccccccCCHHHHHhhh---hc--cCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCC
Confidence            999999999999999999999999   56  8999999999999999999999999999878999999999999999999


Q ss_pred             cccceEEEecCC
Q 006354          609 LFHHIRLWRNGP  620 (649)
Q Consensus       609 V~~~~~V~g~~~  620 (649)
                      |. +|+|+|.++
T Consensus       542 V~-~a~V~G~~~  552 (660)
T PLN02861        542 IA-SIWVYGNSF  552 (660)
T ss_pred             ee-EEEEEecCC
Confidence            99 999999884

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=8.8e-75  Score=656.89  Aligned_cols=504  Identities=34%  Similarity=0.608  Sum_probs=426.9

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 006354           78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR  157 (649)
Q Consensus        78 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~  157 (649)
                      .+...|++++|+++++++|+++|+.++...        ++.      .+.++++||+||.++++++|++|+++|+++||+
T Consensus        40 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~--------~~~------~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~  105 (651)
T PLN02736         40 HPEIGTLHDNFVYAVETFRDYKYLGTRIRV--------DGT------VGEYKWMTYGEAGTARTAIGSGLVQHGIPKGAC  105 (651)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCeEEEEecC--------CCC------CCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            355679999999999999999999764210        222      234578999999999999999999999999999


Q ss_pred             EEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCC
Q 006354          158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS  237 (649)
Q Consensus       158 V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~  237 (649)
                      |+|+++|+++|+++++||+++|+++||+++.++++++.+++++++++++|++.+..+.+..+....+.++.++.+++...
T Consensus       106 Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  185 (651)
T PLN02736        106 VGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADE  185 (651)
T ss_pred             EEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCch
Confidence            99999999999999999999999999999999999999999999999999999888887777667777888887653221


Q ss_pred             CccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCC
Q 006354          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS  317 (649)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  317 (649)
                      .. ..+. ...+....+++++...............++|+|+|+|||||||.||||++||+++++.+.+....+ .+.++
T Consensus       186 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~-~~~~~  262 (651)
T PLN02736        186 PL-PSLP-SGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLST-KFYPS  262 (651)
T ss_pred             hh-hhhh-ccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhcc-CCCCC
Confidence            00 0000 001345678888876554333233445789999999999999999999999999999998888777 88899


Q ss_pred             cEEEEccChHHHHHHHHHHHHHHhCceEEeC--CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHH
Q 006354          318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYG--STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE  395 (649)
Q Consensus       318 d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~--~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  395 (649)
                      |++++++|++|++++...+.++..|+++++.  ++..+++.           +++++||+++++|.+|+.+.+.......
T Consensus       263 d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~-----------i~~~~~t~~~~vP~~~~~l~~~~~~~~~  331 (651)
T PLN02736        263 DVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDD-----------LAALRPTIFCSVPRLYNRIYDGITNAVK  331 (651)
T ss_pred             CEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHH-----------HHHhCCcEEecchHHHHHHHHHHHHHHh
Confidence            9999999999999998888899999999884  34444444           9999999999999999999998888888


Q ss_pred             hhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcccc
Q 006354          396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ  475 (649)
Q Consensus       396 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~  475 (649)
                      ..+.+++.+++++...+...+..+     ....+.++.+++++++..+|+++|.+++||+++++++.++++..+|+++++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~  406 (651)
T PLN02736        332 ESGGLKERLFNAAYNAKKQALENG-----KNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLE  406 (651)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHcC-----CCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEE
Confidence            888899999999888776555421     123457788999999999999999999999999999999999888999999


Q ss_pred             ccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccC
Q 006354          476 AYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD  555 (649)
Q Consensus       476 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~  555 (649)
                      +||+||+++.++.....+...+++|+|+||++++|+|.+++.+...+.+++.|||+|+|++++.|||++|+.|++.|.  
T Consensus       407 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~--  484 (651)
T PLN02736        407 GYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVID--  484 (651)
T ss_pred             EechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhc--
Confidence            999999987776665555667899999999999999965544333345667899999999999999999999999996  


Q ss_pred             CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecC
Q 006354          556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNG  619 (649)
Q Consensus       556 ~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~  619 (649)
                      .+  |||+|||+|++|+||+|+|+||+||+||+++|++|+|.|||++|.+||.|. +|+|+|..
T Consensus       485 ~d--gw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~-~a~V~g~~  545 (651)
T PLN02736        485 ED--GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVA-QCFVYGDS  545 (651)
T ss_pred             cC--CCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCee-EEEEEecC
Confidence            56  899999999999999999999999999987799999999999999999999 99999954

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.3e-73  Score=646.30  Aligned_cols=517  Identities=33%  Similarity=0.578  Sum_probs=419.5

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcceEEeeecCcccccc--CCCc--cceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCC
Q 006354           78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTA--SDGR--KFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN  153 (649)
Q Consensus        78 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~--~dg~--~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~  153 (649)
                      |+...|++++|+++++++||++|+++++....+.+..  .+|+  .|+....+.++++||+||.++++++|++|+++|++
T Consensus        65 ~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~  144 (700)
T PTZ00216         65 WYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLT  144 (700)
T ss_pred             cCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCC
Confidence            3455799999999999999999999874221111111  0222  24445556788999999999999999999999999


Q ss_pred             CCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhcc--CCCccEEEE
Q 006354          154 VDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS--LKTIKNVIY  231 (649)
Q Consensus       154 ~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~--~~~~~~ii~  231 (649)
                      +||+|+|+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+....+......  .+.. .++.
T Consensus       145 ~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~-~ii~  223 (700)
T PTZ00216        145 KGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-TIIY  223 (700)
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCce-EEEE
Confidence            999999999999999999999999999999999999999999999999999999998776655444322  2233 4555


Q ss_pred             ecCCCCCccCCCCCCCCCceEeehHHHHhcCC--CCCC-CCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHH
Q 006354          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGK--RSPV-DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK  308 (649)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~  308 (649)
                      ++......      ...+....+|+++...+.  .... ......++|+|+|+|||||||.||||++||+|+++.+.+..
T Consensus       224 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~  297 (700)
T PTZ00216        224 LDSLPASV------DTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALE  297 (700)
T ss_pred             ECCCcccc------ccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHH
Confidence            54322110      012456788998877652  1111 12345789999999999999999999999999999888766


Q ss_pred             hhC----CCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHH
Q 006354          309 TLI----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD  384 (649)
Q Consensus       309 ~~~----~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~  384 (649)
                      ..+    ..+.++|++++++|++|++++......+..|+++++.++..+.+.    ......++++++||++.++|++|+
T Consensus       298 ~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~l~~~----~~~~~~~l~~~~pT~~~~vP~~~~  373 (700)
T PTZ00216        298 DRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDT----FARPHGDLTEFRPVFLIGVPRIFD  373 (700)
T ss_pred             hhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEECCHHHhhhh----hccccchHHHcCCcEEEechHHHH
Confidence            543    124678999999999999998776667889998888777666553    111122388899999999999999


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHH
Q 006354          385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF  464 (649)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~  464 (649)
                      .+.+.........+.+++.+|.++...+++.+.      .+...++++.++|++++..+|+++|.+++||+++++++.++
T Consensus       374 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~  447 (700)
T PTZ00216        374 TIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALK------EGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEF  447 (700)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH------cCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHH
Confidence            999988877777888899999999998887665      23356789999999999999999999999999999999999


Q ss_pred             HHhhcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCC
Q 006354          465 INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN  544 (649)
Q Consensus       465 ~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~  544 (649)
                      ++..++ +++++||+||+++.++.....+...+++|+|+||++++|+|.++..  ..+++++.|||+|+|++++.|||++
T Consensus       448 ~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~--~~~~~~~~GEL~vrG~~v~~GY~~~  524 (700)
T PTZ00216        448 VNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYK--HTDTPEPRGEILLRGPFLFKGYYKQ  524 (700)
T ss_pred             HHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhc--cCCCCCCCceEEEcCCcccchhcCC
Confidence            988878 9999999999988777665555567899999999999999954422  1245677899999999999999999


Q ss_pred             CccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccc--eEEEecC
Q 006354          545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHH--IRLWRNG  619 (649)
Q Consensus       545 ~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~--~~V~g~~  619 (649)
                      |+.|++.|.  .+  |||+|||+|++|+||+|+|+||+||+||..+|++|+|++||++|.+||.|. +  ++|++.+
T Consensus       525 pe~T~~~f~--~d--Gw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~-~~~~~v~~~~  596 (700)
T PTZ00216        525 EELTREVLD--ED--GWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVV-PNGVCVLVHP  596 (700)
T ss_pred             hhHhhhhcc--cc--CCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcc-cceEEEEEec
Confidence            999999997  66  899999999999999999999999999955799999999999999999999 7  3444433

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=7.6e-73  Score=638.94  Aligned_cols=522  Identities=32%  Similarity=0.575  Sum_probs=426.1

Q ss_pred             CCCCccccccCCCCcccccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHH
Q 006354           58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF  137 (649)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~  137 (649)
                      ++.||+......++    ...+..+|++++|++.++++|+++|++++...        ++.      .++++++||+|+.
T Consensus        22 ~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~--------~~~------~~~~~~~Ty~el~   83 (660)
T PLN02430         22 GPVYRNLLSKKGFP----PIDSDITTAWDIFSKSVEKYPDNKMLGWRRIV--------DGK------VGPYMWKTYKEVY   83 (660)
T ss_pred             CCcccccccccccc----CCCCCCCCHHHHHHHHHHhCCCCceEEEEecC--------CCC------CCCcEEEEHHHHH
Confidence            56666654333321    12356789999999999999999999876321        222      2456789999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH-HHH
Q 006354          138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-KKL  216 (649)
Q Consensus       138 ~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~l  216 (649)
                      ++++++|++|.++|+++||+|+|+++|+++|+++++||+++|+++||+++.++++++.+++++++++++|++.... ..+
T Consensus        84 ~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~  163 (660)
T PLN02430         84 EEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELL  163 (660)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987643 333


Q ss_pred             HHhhccCCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEec
Q 006354          217 SAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT  296 (649)
Q Consensus       217 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~t  296 (649)
                      .......+.++.+|.+++.......  .....+....+|+++...+...........++|+++|+|||||||.||||++|
T Consensus       164 ~~~~~~~~~l~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lt  241 (660)
T PLN02430        164 EPDCKSAKRLKAIVSFTSVTEEESD--KASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLT  241 (660)
T ss_pred             hhhcccCCCceEEEEECCCChHHhh--hhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEee
Confidence            3333345567788887643221100  00011345678888876654433333445789999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhC----CCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeC--CcccccccchhhccCcccccee
Q 006354          297 HGNIVATAAAIKTLI----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG--STLTMTDTSSKIKKGTKGDVSV  370 (649)
Q Consensus       297 h~~l~~~~~~~~~~~----~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~--~~~~l~~~~~~~~~~~~~~i~~  370 (649)
                      |+|+++.+.+.....    ..++++|++++++|++|.++....+.++..|+++++.  ++..+.+.           +++
T Consensus       242 h~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~-----------l~~  310 (660)
T PLN02430        242 HEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDD-----------LME  310 (660)
T ss_pred             cHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHH-----------HHH
Confidence            999998877654321    1467889999999999999988767788999999873  34445554           899


Q ss_pred             ecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEE
Q 006354          371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM  450 (649)
Q Consensus       371 ~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i  450 (649)
                      ++||++.++|.+|+.+.+.+.......+.+++.+|+++.+.+...+.....  ....+++++.++++++++.+|++||.+
T Consensus       311 ~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~l~~~~i~~~~G~~lr~~  388 (660)
T PLN02430        311 LKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYS--HKKASPMADFLAFRKVKAKLGGRLRLL  388 (660)
T ss_pred             hCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCC--CCCcchhHHHHHHHHHHHHhCCeEEEE
Confidence            999999999999999999888877777888999999999999887753221  123467889999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCC-CCCCccCCCcccceEEEEecCCCCcccCCCCCCccE
Q 006354          451 ICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE  529 (649)
Q Consensus       451 ~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GE  529 (649)
                      ++||+++++++.++++...+++++++||+||+++..+.....+ ...+++|+|.|+++++++|.++.++.. .+.++.||
T Consensus       389 ~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~-~~~~~~GE  467 (660)
T PLN02430        389 ISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDP-LGEPPRGE  467 (660)
T ss_pred             EECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCccc-CCCCCcce
Confidence            9999999999988887654578999999999988776554433 346899999999999999865555432 45567899


Q ss_pred             EEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCccc
Q 006354          530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLL  609 (649)
Q Consensus       530 l~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V  609 (649)
                      |+|+|++++.|||++|+.|++.|   .+  |||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||.|
T Consensus       468 i~vrg~~v~~GY~~~~e~t~~~~---~d--Gw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V  542 (660)
T PLN02430        468 ICVRGKCLFSGYYKNPELTEEVM---KD--GWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIV  542 (660)
T ss_pred             EEecCCCccccccCChHHhhhhh---hc--cceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCe
Confidence            99999999999999999999998   56  89999999999999999999999999998789999999999999999999


Q ss_pred             ccceEEEecC
Q 006354          610 FHHIRLWRNG  619 (649)
Q Consensus       610 ~~~~~V~g~~  619 (649)
                      . +|+|+|+.
T Consensus       543 ~-~~~V~G~~  551 (660)
T PLN02430        543 E-DIWVYGDS  551 (660)
T ss_pred             e-EEEEEecC
Confidence            9 99999976

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=4.4e-70  Score=541.21  Aligned_cols=454  Identities=23%  Similarity=0.313  Sum_probs=390.4

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++++-.+++-||+.|+++-.          .|.           ++||+|+.+.++.+|++|.++|+++||||+|
T Consensus        49 ~~Tigq~l~~~t~~v~dkea~Vf~~----------eg~-----------R~Tf~~~~~ev~slAaGll~lGL~kGDrVgv  107 (596)
T KOG1177|consen   49 SETIGQLLETTTERVPDKEAAVFDH----------EGI-----------RLTFSEFVSEVESLAAGLLSLGLKKGDRVGV  107 (596)
T ss_pred             cccHHHHHHHHhhccCcceEEEEee----------ccc-----------hhhHHHHHHHHHHHHhhHHhhcCCCCCEEEE
Confidence            3799999999999999999999854          444           5899999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh-----HHHHHHhh-------------cc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVS-------------SS  222 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~l~~~~-------------~~  222 (649)
                      +.||+.+|+..+|||.++|.+.|++||.+...++++.|++.+++++|+...+     .+.+.++.             +.
T Consensus       108 wgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~  187 (596)
T KOG1177|consen  108 WGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSEL  187 (596)
T ss_pred             ecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccc
Confidence            9999999999999999999999999999999999999999999999986543     23333322             24


Q ss_pred             CCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCC-----CCCCCCCCeEEEEeecCCCCCcceEEech
Q 006354          223 LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVD-----PSLPSQNGVAVIMYTSGSTGLPKGVMITH  297 (649)
Q Consensus       223 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSGSTG~PKgV~~th  297 (649)
                      +|.+.++|..+++..           -...+.++|+...+......     .....|+|++.|.|||||||.|||+.+||
T Consensus       188 lp~lthvi~~~ed~~-----------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH  256 (596)
T KOG1177|consen  188 LPELTHVILADEDHP-----------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSH  256 (596)
T ss_pred             cccceEEEecCCCCc-----------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeeh
Confidence            678888888774432           23567788887766553221     24457899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEe----CCcccccccchhhccCccccceeec
Q 006354          298 GNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY----GSTLTMTDTSSKIKKGTKGDVSVLK  372 (649)
Q Consensus       298 ~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~----~~~~~l~~~~~~~~~~~~~~i~~~~  372 (649)
                      .|++++.......+ ++.++++++...|++|.+|... .+.+|..|+++++    ++|...++.           |++++
T Consensus       257 ~~~~Nna~~vg~r~-g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqa-----------i~~ek  324 (596)
T KOG1177|consen  257 YNFLNNARAVGARA-GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQA-----------ISNEK  324 (596)
T ss_pred             hhhhhhHHHHHHHh-CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHH-----------HHhhc
Confidence            99999999999998 9999999999999999999654 8899999999999    555555555           99999


Q ss_pred             ceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEe
Q 006354          373 PTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMIC  452 (649)
Q Consensus       373 ~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~  452 (649)
                      +|.++++|+++..+++....                                               .++..+++|.++.
T Consensus       325 cT~l~gtPtM~~Dlln~~~~-----------------------------------------------~~~~~s~lr~~vi  357 (596)
T KOG1177|consen  325 CTTLYGTPTMFVDLLNIPQK-----------------------------------------------QQVDLSSLRKGVI  357 (596)
T ss_pred             eEEEecChHHHHHHhcchhh-----------------------------------------------ccCchhhhhhhee
Confidence            99999999999988864322                                               2223358999999


Q ss_pred             cCCCCCHHHHHHHHhhcCC-ccccccCcccccccccccCCCCC---CCCccCCCcccceEEEEecCCCCcccCCCCCCcc
Q 006354          453 GGAPLSADSQRFINICMGA-PIGQAYGLTETCAGSTFSEWDDP---SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG  528 (649)
Q Consensus       453 gG~~l~~~~~~~~~~~~~~-~l~~~YG~TE~~~~~~~~~~~~~---~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~G  528 (649)
                      ||+++|+++.+.+...++. .+...||+||++...+.+...+.   +..++|+.+++.+..|+| ..+..   .+.|..|
T Consensus       358 gGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~---v~~~~~G  433 (596)
T KOG1177|consen  358 GGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSE---VPLGTKG  433 (596)
T ss_pred             CCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCc---cccCCCc
Confidence            9999999999999887764 47789999999988887766554   348999999999999999 55543   5778889


Q ss_pred             EEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcc
Q 006354          529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPL  608 (649)
Q Consensus       529 El~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~  608 (649)
                      |||+||++++.|||+++++|+++..  .|  +||+|||+|.+|++|+++|+||.+|+|+ ++|++|+|.|||+.|.+||.
T Consensus       434 el~iRGY~tMl~Ywg~~~kT~eti~--~d--rW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~  508 (596)
T KOG1177|consen  434 ELLIRGYSTMLGYWGEEEKTKETIG--ND--RWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPL  508 (596)
T ss_pred             eEEEEechhheeecCCcccchhhcc--cc--cceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCC
Confidence            9999999999999999999999876  56  9999999999999999999999999999 69999999999999999999


Q ss_pred             cccceEEEecCCCCcccchhhhhhhhh
Q 006354          609 LFHHIRLWRNGPMKLASSTKIFQSCVT  635 (649)
Q Consensus       609 V~~~~~V~g~~~~~~~~~~~~~~~~~~  635 (649)
                      |. ++.|+|++|...|+.+.+.+.+.+
T Consensus       509 V~-~a~VVGV~D~R~GE~VCA~vRLqe  534 (596)
T KOG1177|consen  509 VK-EAHVVGVPDERLGEEVCACVRLQE  534 (596)
T ss_pred             ee-eEEEEccCCCcccceEEEEEEeec
Confidence            99 999999999999988766655543

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=3.1e-69  Score=575.78  Aligned_cols=428  Identities=26%  Similarity=0.372  Sum_probs=361.4

Q ss_pred             EEeHHHHHHHHHHHHHHHHHCC--CCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEE
Q 006354          130 WQTYGEVFDRACSFASGLVNFG--HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI  207 (649)
Q Consensus       130 ~~TY~eL~~~~~~lA~~L~~~G--v~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi  207 (649)
                      .+||+|+.+++.++|.+|.++|  +++||+|++++||+++++.+++||+++|+++.|++|.+.+.++.+.+++++++++|
T Consensus        45 ~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif  124 (537)
T KOG1176|consen   45 ELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIF  124 (537)
T ss_pred             EEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEE
Confidence            7999999999999999999875  89999999999999999999999999999999999999999999999999999999


Q ss_pred             ECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCCCceEee-hHHHHhcCCCCCCCCCCCCCCCeEEEEeecCC
Q 006354          208 CDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSS-FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGS  286 (649)
Q Consensus       208 ~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGS  286 (649)
                      ++....+++.++...+.  ..++.+.......     .........+ +..+...+....  ..+.+.+|++.|.|||||
T Consensus       125 ~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGT  195 (537)
T KOG1176|consen  125 VDEDFYDKISEATSKLA--LKIIVLTGDEGVI-----SISDLVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGT  195 (537)
T ss_pred             EcCchHHHHHHHHhhcC--CceEEEecccCcc-----ccccccccccchhhccccCCCcc--cccCCCCCeEEEecCCCC
Confidence            99999999988776555  4444444331100     0000011111 333333322222  455677999999999999


Q ss_pred             CCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHH-HHhCceEEe---CCcccccccchhhcc
Q 006354          287 TGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM-LCAGCAIGY---GSTLTMTDTSSKIKK  362 (649)
Q Consensus       287 TG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~-l~~G~~l~~---~~~~~l~~~~~~~~~  362 (649)
                      ||.||||++||++++.......... .++.+|+.++.+|++|.+|+...+.+ +..|+++++   +++..+++.      
T Consensus       196 Tg~PKgV~lsHr~~~~~~~~~~~~~-~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~------  268 (537)
T KOG1176|consen  196 TGLPKGVVLSHRNLIANTLSIKIGW-ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDL------  268 (537)
T ss_pred             CCCCceEEEecHHHHHHHHHhhhcc-cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHH------
Confidence            9999999999999999988777666 77779999999999999999997775 455555555   566667776      


Q ss_pred             CccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHH
Q 006354          363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV  442 (649)
Q Consensus       363 ~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (649)
                           +++|++|+++++|.++..+++....                                               ...
T Consensus       269 -----i~kykvt~~~~vP~~~~~l~~~p~~-----------------------------------------------~~~  296 (537)
T KOG1176|consen  269 -----IEKYKVTHLFLVPPVLNMLAKSPIV-----------------------------------------------KKY  296 (537)
T ss_pred             -----HHHhCEEEEEcChHHHHHHhcCCcc-----------------------------------------------Ccc
Confidence                 9999999999999999999875311                                               111


Q ss_pred             hCCceEEEEecCCCCCHHHHHHHHhhcC-CccccccCcccccccccccCCCCC-CCCccCCCcccceEEEEecCCCCccc
Q 006354          443 LGGRIRFMICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDP-SVGRVGPPVPCCYIKLVSWDEGGYKT  520 (649)
Q Consensus       443 ~g~~Lr~i~~gG~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~~~~~~~~-~~~~vG~p~p~~~v~i~d~~~~~~~~  520 (649)
                      ..+++|.+++||+++++++.+.+++.++ ..+.++||+||+++.++.+...+. .++++|+++++++++|.+ +++..  
T Consensus       297 ~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~-e~g~~--  373 (537)
T KOG1176|consen  297 DLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD-ETGVS--  373 (537)
T ss_pred             cCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC-CCCCC--
Confidence            2369999999999999999999999997 889999999999988887776664 789999999988888887 66654  


Q ss_pred             CCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhh
Q 006354          521 SDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIP  600 (649)
Q Consensus       521 ~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE  600 (649)
                       +++++.||||++|+.++.||++||++|++.|.  .+  |||+|||+|++|+||+|+|+||++|+||. +|++|+|.|||
T Consensus       374 -l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~--~~--GW~~TGDiGy~D~DG~l~IvdR~KdlIk~-~G~qv~P~EiE  447 (537)
T KOG1176|consen  374 -LGPNQTGEICVRGPQVMKGYLKNPEATKEAFD--DD--GWFHTGDLGYFDEDGYLYIVDRSKDLIKY-GGEQVSPAEIE  447 (537)
T ss_pred             -CCCCCceEEEEECcccchhhcCChHHHHhhcc--cC--CccccCceEEEcCCCeEEEecchhhheee-CCEEeCHHHHH
Confidence             78999999999999999999999999999997  55  89999999999999999999999999997 69999999999


Q ss_pred             hHhccCcccccceEEEecCCCCcccchhhhhhhhh
Q 006354          601 STTTVLPLLFHHIRLWRNGPMKLASSTKIFQSCVT  635 (649)
Q Consensus       601 ~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~~~~  635 (649)
                      ++|.+||.|. ||+|||.+|+..|+...+++..++
T Consensus       448 ~vL~~hP~V~-eaaVvgipDe~~Ge~p~A~VV~k~  481 (537)
T KOG1176|consen  448 AVLLTHPDVL-EAAVVGIPDEVWGETPAAFVVLKK  481 (537)
T ss_pred             HHHHhCCCcc-EEEEEcccccccCCcceEEEEecC
Confidence            9999999999 999999999999999888877764

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.9e-67  Score=580.05  Aligned_cols=455  Identities=29%  Similarity=0.408  Sum_probs=377.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 006354           80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA  159 (649)
Q Consensus        80 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~  159 (649)
                      ...++.++++++++++|+++|+.+.            +.       .  ..+||+||.++++++|+.|++.|+++||+|+
T Consensus         9 ~~~~~~~~l~~~a~~~~~~~a~~~~------------~~-------~--~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVa   67 (534)
T COG0318           9 AELTLASLLERAARRNPDRPALIFL------------GR-------G--GRLTYRELDRRANRLAAALQALGVKPGDRVA   67 (534)
T ss_pred             ccccHHHHHHHHHHhCCCceEEEEc------------CC-------C--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            3479999999999999999999973            32       0  1499999999999999999999999999999


Q ss_pred             EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCc
Q 006354          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK  239 (649)
Q Consensus       160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~  239 (649)
                      |+++|+++++++++||+++|++++|++|.+.+.++.+++++++++.++++.+..+.+..+....+....+..........
T Consensus        68 il~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (534)
T COG0318          68 ILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRL  147 (534)
T ss_pred             EECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccc
Confidence            99999999999999999999999999999999999999999999999999885555555544433333333222111100


Q ss_pred             cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCC--CCCC
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN--PGRS  317 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~~  317 (649)
                                 . .+++++..............+++|+|+|+|||||||.||||++||+|++.........+ .  ++++
T Consensus       148 -----------~-~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~~~  214 (534)
T COG0318         148 -----------P-ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-GGGLTPD  214 (534)
T ss_pred             -----------c-ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-cccCCCC
Confidence                       0 24555533322222222336799999999999999999999999999999998888888 6  8999


Q ss_pred             cEEEEccChHHHHHHHHHHH-HHHhCceEEeCC-----cccccccchhhccCccccceeecceEEEechHHHHHHHHHHH
Q 006354          318 DVYLAYLPLAHVLELAAESI-MLCAGCAIGYGS-----TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (649)
Q Consensus       318 d~~l~~~pl~h~~~~~~~~~-~l~~G~~l~~~~-----~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  391 (649)
                      |++++.+|++|++|+...+. +++.|+++++..     +..+...           +.++++|++.++|+++..++.+..
T Consensus       215 d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~-----------i~~~~~t~~~~vPt~~~~ll~~~~  283 (534)
T COG0318         215 DVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWL-----------IEKYKVTVLSGVPTFLRELLDNPE  283 (534)
T ss_pred             ceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHH-----------HHHhcceEEecchHHHHHHHhCCc
Confidence            99999999999999998555 599999998844     3334444           888889999999999999877532


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCC-ceEEEEecCCCCCHHHHHHHHhhcC
Q 006354          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGG-RIRFMICGGAPLSADSQRFINICMG  470 (649)
Q Consensus       392 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~Lr~i~~gG~~l~~~~~~~~~~~~~  470 (649)
                      .....                                               .+ +||.+++||+++++++.+.+++.++
T Consensus       284 ~~~~~-----------------------------------------------~~~~lr~~~~gg~~~~~~~~~~~~~~~~  316 (534)
T COG0318         284 KDDDD-----------------------------------------------LSSSLRLVLSGGAPLPPELLERFEERFG  316 (534)
T ss_pred             cCccc-----------------------------------------------cccceEEEEecCCcCCHHHHHHHHHHhC
Confidence            21100                                               01 3999999999999999999999987


Q ss_pred             -CccccccCcccccccccccCCCC--CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCcc
Q 006354          471 -APIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (649)
Q Consensus       471 -~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~  547 (649)
                       ..+++.||+||+++.++.....+  ...+++|+|+|+++++|+|.+++..   +| |++|||+|+||+++.|||++|+.
T Consensus       317 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~---~p-g~vGei~irgp~v~~GY~~~pe~  392 (534)
T COG0318         317 PIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEV---LP-GEVGEIWVRGPNVMKGYWNRPEA  392 (534)
T ss_pred             CCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCcc---CC-CCceEEEEECchhhhhhcCChHH
Confidence             47999999999998777776665  4568889999999999999555422   33 88999999999999999999999


Q ss_pred             chhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       548 t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      |++.|.  .+  |||+|||+|++|+||+++|+||.+|+|+. +|++|+|.|||+++.+||.|. +|+|+|.+++..|+.+
T Consensus       393 t~~~f~--~~--gW~~TGDlg~~d~~G~l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~-~aavvgvpd~~~Ge~~  466 (534)
T COG0318         393 TAEAFD--ED--GWLRTGDLGYVDEDGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVA-EAAVVGVPDERWGERV  466 (534)
T ss_pred             HHHhhc--cC--CeeeecceEEEcCCccEEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcc-eEEEEeCCCCccCceE
Confidence            999885  34  89999999999999999999999999996 699999999999999999999 9999999999999999


Q ss_pred             hhhhhhhhh
Q 006354          628 KIFQSCVTK  636 (649)
Q Consensus       628 ~~~~~~~~~  636 (649)
                      .++...++.
T Consensus       467 ~a~v~~~~~  475 (534)
T COG0318         467 VAVVVLKPG  475 (534)
T ss_pred             EEEEEEcCC
Confidence            888887643

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.2e-67  Score=560.39  Aligned_cols=452  Identities=19%  Similarity=0.235  Sum_probs=367.3

Q ss_pred             HHHHHHHHh-CCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcc
Q 006354           86 ALFEQSCKS-HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAE  163 (649)
Q Consensus        86 ~~~~~~a~~-~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~  163 (649)
                      ..++++.+. .+|+.|+++..            .      .+..+.+||+||.++++++|+.|++ .|+ +||||+|++|
T Consensus        13 n~~dr~~~~~~~~~~aii~~~------------e------~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp   73 (528)
T COG0365          13 NALDRHLEADRPDDTAIIFDG------------E------DGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMP   73 (528)
T ss_pred             hhhhhhhhccCCCceEEEEEc------------C------CCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcC
Confidence            356666653 47899999852            1      1111679999999999999999987 578 9999999999


Q ss_pred             CCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhc--cCC-CccEEEEecCCCCCcc
Q 006354          164 TCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSS--SLK-TIKNVIYFENDGSEKD  240 (649)
Q Consensus       164 ~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~--~~~-~~~~ii~~~~~~~~~~  240 (649)
                      +.+|.++++|||+++||+.+|+.+.++++.+++.+++++++++|+++....+...+..  ... .+..++++...     
T Consensus        74 ~~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~-----  148 (528)
T COG0365          74 NSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL-----  148 (528)
T ss_pred             CCHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc-----
Confidence            9999999999999999999999999999999999999999999998876654432211  000 00002322211     


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  320 (649)
                              +   ..|+++...... ..+..+.+.+|+++|+|||||||+||||+++|++++............+.++|++
T Consensus       149 --------~---~~~~~~~~~~~~-~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~  216 (528)
T COG0365         149 --------G---LWYDEAVEKASE-KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRF  216 (528)
T ss_pred             --------c---ccHHHHhhccCC-CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEE
Confidence                    1   566666654332 2234458899999999999999999999999998888777766543377799999


Q ss_pred             EEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcc
Q 006354          321 LAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (649)
Q Consensus       321 l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~  399 (649)
                      ++..++.|+.+.++ ++.+|.+|+++++++....-+     +..+++.|+++++|++++.|+.++.|.+...        
T Consensus       217 w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~-----~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--------  283 (528)
T COG0365         217 WNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYS-----PERLWEALEKYKVTIFGTSPTFLRRLMKLGL--------  283 (528)
T ss_pred             EeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCC-----HHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--------
Confidence            99999999999988 788999999998832221111     1223333999999999999999999976421        


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCc
Q 006354          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL  479 (649)
Q Consensus       400 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~  479 (649)
                                                             .++.++++||.+.+.||||++++.+++.+.+|++|.+.||.
T Consensus       284 ---------------------------------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gq  324 (528)
T COG0365         284 ---------------------------------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQ  324 (528)
T ss_pred             ---------------------------------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccc
Confidence                                                   12334469999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccc--cccccccCCCccchhhhccCCC
Q 006354          480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF--NVTAGYFNNPGKTSEVYKVDER  557 (649)
Q Consensus       480 TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~--~v~~gY~~~~~~t~~~f~~~~~  557 (649)
                      ||++.+.....+ ....++.|+|+||+++.|+| ++++.   +++++ |+|+|+.+  +++++||+||+.+.++|.   +
T Consensus       325 TEtg~~~~~~~~-~~~~g~~g~p~pG~~~~vvd-d~g~~---~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~---~  395 (528)
T COG0365         325 TETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVD-DEGNP---VPPGV-GELVVRLPWPGMALTYWNDPERYKEAYF---G  395 (528)
T ss_pred             cccCccccCCCC-CcCCCCCCCCCCCceeEEEC-CCCCc---CCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHh---h
Confidence            999955544444 44556669999999999999 44654   67888 99999987  999999999999999984   3


Q ss_pred             cccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhhhhhhc
Q 006354          558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQSCVTKL  637 (649)
Q Consensus       558 ~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~~~~~~  637 (649)
                        +||.|||.+++|+||+++|+||.||+||++ |+||.+.|||++|.+||.|. ||+|+|.+|+..|+.+++|+.+++..
T Consensus       396 --~~y~tGD~~~~DedGy~~i~GR~DDvI~vs-G~Rig~~EvE~~l~~hP~Va-EaAvVg~pd~~kg~~v~afVvL~~g~  471 (528)
T COG0365         396 --RWYRTGDWAERDEDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPAVA-EAAVVGVPDPGKGQIVLAFVVLAAGV  471 (528)
T ss_pred             --ceeecCceeEEccCCCEEEEeeccceEecc-CeeccHHHHHHHHHhCccee-eeEEEeccCCCCCcEEEEEEEecCCC
Confidence              399999999999999999999999999986 99999999999999999999 99999999999999999999888655


Q ss_pred             c
Q 006354          638 R  638 (649)
Q Consensus       638 ~  638 (649)
                      .
T Consensus       472 ~  472 (528)
T COG0365         472 E  472 (528)
T ss_pred             C
Confidence            3

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=7.5e-64  Score=565.26  Aligned_cols=477  Identities=21%  Similarity=0.261  Sum_probs=378.2

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .|++++|+++|+++|+++|+.+...         ++.      ....+++||+||.++++++|+.|+++|+++||+|+++
T Consensus        25 ~t~~~~l~~~a~~~p~~~Al~~~~~---------~~~------~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~   89 (632)
T PRK07529         25 ASTYELLSRAAARHPDAPALSFLLD---------ADP------LDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFL   89 (632)
T ss_pred             CCHHHHHHHHHHHCCCCceEEeecc---------cCC------CCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            6899999999999999999987421         110      1223579999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECch-----hHHHHHHhhccCCCccEEEEecCCC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK-----QLKKLSAVSSSLKTIKNVIYFENDG  236 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-----~~~~l~~~~~~~~~~~~ii~~~~~~  236 (649)
                      ++|++++++++|||+++| +++|++|.++++++.+++++++++++|++..     ..+++..+....+.++.++.++...
T Consensus        90 ~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  168 (632)
T PRK07529         90 LPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLAR  168 (632)
T ss_pred             CCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcc
Confidence            999999999999999999 5799999999999999999999999999754     3455555556667777777765432


Q ss_pred             CCccC-CCC----CCCCCceEeehHHHHhcCCCCC-CCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhh
Q 006354          237 SEKDS-GVS----GGISNWTVSSFSEVEKLGKRSP-VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL  310 (649)
Q Consensus       237 ~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~  310 (649)
                      ..... ...    .......+..+.+......... .......++++++|+|||||||.||||++||+++++.+......
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~  248 (632)
T PRK07529        169 YLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALL  248 (632)
T ss_pred             cccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHh
Confidence            10000 000    0001123445665554332221 12234467999999999999999999999999999988877777


Q ss_pred             CCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       311 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                      + .+.++|++++.+|++|.++... ++.++..|+++++.++..+.+..  ....++..++++++|++.++|+++..+.+.
T Consensus       249 ~-~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  325 (632)
T PRK07529        249 L-GLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPG--VIANFWKIVERYRINFLSGVPTVYAALLQV  325 (632)
T ss_pred             c-CCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcch--HHHHHHHHHHHhCCeEEEeHHHHHHHHHhC
Confidence            7 7889999999999999998875 67889999999997664432210  012344559999999999999999988653


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      ...                                                ....++||.+++||+++++++.+.+++.+
T Consensus       326 ~~~------------------------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~~  357 (632)
T PRK07529        326 PVD------------------------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAAT  357 (632)
T ss_pred             ccc------------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHh
Confidence            110                                                00124899999999999999999999999


Q ss_pred             CCccccccCcccccccccccCCC-CCCCCccCCCcccceEEEEecC-CCCcccCCCCCCccEEEEccccccccccCCCcc
Q 006354          470 GAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWD-EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (649)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~-~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~  547 (649)
                      ++++++.||+||++.+++..... ....+++|+|+|+++++|+..+ ++.+...|++|+.|||+|+|++++.||++++ .
T Consensus       358 g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~  436 (632)
T PRK07529        358 GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-H  436 (632)
T ss_pred             CCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-c
Confidence            99999999999998777665543 2356899999999999997543 3433344889999999999999999999865 4


Q ss_pred             chhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       548 t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      +...|.  .+  |||+|||+|++|+||++++.||.||+||+ +|++|+|.+||++|.+||+|. +|+|+|.+++..|+..
T Consensus       437 ~~~~~~--~~--gw~~TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~-~a~vvg~~d~~~ge~~  510 (632)
T PRK07529        437 NKGLWL--ED--GWLNTGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVA-LAAAVGRPDAHAGELP  510 (632)
T ss_pred             cccccc--CC--CceEcCcEEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCee-EEEEEeccCCCCCcee
Confidence            556664  45  89999999999999999999999999996 699999999999999999999 9999999998888765


Q ss_pred             hhhhh
Q 006354          628 KIFQS  632 (649)
Q Consensus       628 ~~~~~  632 (649)
                      .++..
T Consensus       511 ~a~v~  515 (632)
T PRK07529        511 VAYVQ  515 (632)
T ss_pred             EEEEE
Confidence            55543

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=6.8e-66  Score=671.65  Aligned_cols=488  Identities=18%  Similarity=0.247  Sum_probs=402.6

Q ss_pred             CcccccccccCCCccceehheeeecceeEeeehhccccccccccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHH
Q 006354            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (649)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (649)
                      +|++++|++..+..|..++..+++.+    +++  |...   +.+++++...+++.+....+   ....+.+...|++++
T Consensus      3033 ~y~~~~~~~~~~~~~~~~~~~~l~~~----~~~--p~~~---~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~l 3100 (3956)
T PRK12467       3033 SYDRQHFDAAAIERLAESFDRLLQAM----LNN--PAAR---LGELPTLAAHERRQVLHAWN---ATAAAYPSERLVHQL 3100 (3956)
T ss_pred             EechhhCCHHHHHHHHHHHHHHHHHH----HhC--cCCc---hhhccCCCHHHHHHHHHhhc---cCCCCCCccccHHHH
Confidence            79999999999999999999888843    344  7776   88899999888877644333   122334455799999


Q ss_pred             HHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH
Q 006354           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (649)
Q Consensus        88 ~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~  167 (649)
                      |+++++++|+++|+++            +++           .+||+||.++++++|++|+++|+++|++|+|+++|+++
T Consensus      3101 ~~~~a~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~ 3157 (3956)
T PRK12467       3101 IEAQVARTPEAPALVF------------GDQ-----------QLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVE 3157 (3956)
T ss_pred             HHHHHHhCCCcceEee------------CCc-----------ccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHH
Confidence            9999999999999987            332           59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCC
Q 006354          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (649)
Q Consensus       168 ~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~  247 (649)
                      +++++|||+++|+++||+||.+|.+++.+++++++++++|++....+.+...    .. ..++.++.             
T Consensus      3158 ~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~----~~-~~~~~~~~------------- 3219 (3956)
T PRK12467       3158 MIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP----AG-DTALTLDR------------- 3219 (3956)
T ss_pred             HHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc----cC-Cceeeecc-------------
Confidence            9999999999999999999999999999999999999999998765443211    01 11111111             


Q ss_pred             CCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChH
Q 006354          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (649)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (649)
                                ..........+.....++++|||+|||||||.||||+++|+++.+.+.+....+ +++++|++++++|++
T Consensus      3220 ----------~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~ 3288 (3956)
T PRK12467       3220 ----------LDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-ELDANDRVLLFMSFS 3288 (3956)
T ss_pred             ----------hhhcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-CCCcCCEEEEecCcc
Confidence                      111111112223445789999999999999999999999999999999999888 999999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 006354          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (649)
Q Consensus       328 h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (649)
                      |+.++..++.+|..|+++++.+ ....+     +..+...++++++|++.++|++++.+.+....               
T Consensus      3289 fd~~~~~~~~~L~~G~~l~i~~-~~~~~-----~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--------------- 3347 (3956)
T PRK12467       3289 FDGAQERFLWTLICGGCLVVRD-NDLWD-----PEELWQAIHAHRISIACFPPAYLQQFAEDAGG--------------- 3347 (3956)
T ss_pred             HhHHHHHHHHHHhCCCEEEECC-cccCC-----HHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc---------------
Confidence            9999988999999999999865 22222     12233449999999999999999988653110               


Q ss_pred             HHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccCcccccccc
Q 006354          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGS  486 (649)
Q Consensus       408 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~  486 (649)
                                                        ...++||.+++|||++++++.+.|.+.+ ++.++|.||+||+++.+
T Consensus      3348 ----------------------------------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 3393 (3956)
T PRK12467       3348 ----------------------------------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTV 3393 (3956)
T ss_pred             ----------------------------------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeee
Confidence                                              0124799999999999999999888766 67899999999998877


Q ss_pred             cccCCCC-----CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC---Cc
Q 006354          487 TFSEWDD-----PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE---RG  558 (649)
Q Consensus       487 ~~~~~~~-----~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~---~~  558 (649)
                      +......     ....++|+|++|++++|+| ++++.   +++|+.|||+|+|+++++||+|+|++|+++|..++   +|
T Consensus      3394 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~---vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g 3469 (3956)
T PRK12467       3394 TLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNP---VPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSG 3469 (3956)
T ss_pred             EEEecccccccCCCCCCCccccCCCEEEEEC-CCCCC---CCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCC
Confidence            6543321     2237899999999999998 55543   78999999999999999999999999999998542   35


Q ss_pred             ccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCC
Q 006354          559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGP  620 (649)
Q Consensus       559 ~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~  620 (649)
                      .+||||||+|++++||+|+|+||+||+||++ |+||+|+|||++|.+||+|. +|+|++..+
T Consensus      3470 ~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~-G~rIe~~EIE~~l~~~p~V~-~a~v~~~~~ 3529 (3956)
T PRK12467       3470 GRLYRTGDLARYRADGVIEYLGRIDHQVKIR-GFRIELGEIEARLLQHPSVR-EAVVLARDG 3529 (3956)
T ss_pred             ceeeccchhheecCCCcEEEeccccceEeec-eEeecHHHHHHHHhhCcccc-eEEEEEecC
Confidence            6799999999999999999999999999995 99999999999999999999 999998753

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.2e-64  Score=567.48  Aligned_cols=483  Identities=16%  Similarity=0.142  Sum_probs=363.6

Q ss_pred             CCCHHHHHHHHHHh--CCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 006354           81 ASTMAALFEQSCKS--HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (649)
Q Consensus        81 ~~tl~~~~~~~a~~--~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (649)
                      .++..++++++++.  +|+++|+++..          ++.       +..+.+||+||.++++++|+.|+++|+++||+|
T Consensus        58 ~n~~~~~l~~~~~~~~~~~~~A~~~~~----------~~~-------~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV  120 (647)
T PTZ00237         58 LNTCYNVLDIHVKNPLKRDQDALIYEC----------PYL-------KKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNV  120 (647)
T ss_pred             eeHHHHHHHHhhcccCCCCceEEEEEc----------CCC-------CceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            46778899888765  79999998742          111       123579999999999999999999999999999


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECch---------hHHHHHHhhccCC-CccE
Q 006354          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK---------QLKKLSAVSSSLK-TIKN  228 (649)
Q Consensus       159 ~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~l~~~~~~~~-~~~~  228 (649)
                      +|+++|++++++++|||+++|++++|+++.++++++.++|++++++++|+++.         ..+.+.++..... ....
T Consensus       121 ~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (647)
T PTZ00237        121 LIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSN  200 (647)
T ss_pred             EEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCE
Confidence            99999999999999999999999999999999999999999999999999752         2233333332111 2345


Q ss_pred             EEEecCCCC---CccCCCCCCCCCceEeehHHHHhcCC----CCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHH-H
Q 006354          229 VIYFENDGS---EKDSGVSGGISNWTVSSFSEVEKLGK----RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN-I  300 (649)
Q Consensus       229 ii~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~-l  300 (649)
                      ++.+.....   .....+...+.......|+++.....    ..........++|+++|+|||||||.||||+++|++ +
T Consensus       201 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l  280 (647)
T PTZ00237        201 VITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHL  280 (647)
T ss_pred             EEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHH
Confidence            554422110   00000000000012245666554221    111122445789999999999999999999999999 4


Q ss_pred             HHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEech
Q 006354          301 VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP  380 (649)
Q Consensus       301 ~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P  380 (649)
                      ++........+ ....+|++++..|++|+.+...++.+|..|+++++.+...+...  +....++..++++++|++.++|
T Consensus       281 ~~~~~~~~~~~-~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~--~~~~~~~~~i~~~~vt~~~~~P  357 (647)
T PTZ00237        281 VGLKYYWRSII-EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNK--HIEDDLWNTIEKHKVTHTLTLP  357 (647)
T ss_pred             HHHHHHHHHhc-CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCC--CchHHHHHHHHHhCeEEEEeCH
Confidence            44333334444 67778999999999998766667889999999998432111000  0012234449999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHH
Q 006354          381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD  460 (649)
Q Consensus       381 ~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~  460 (649)
                      ++++.+.+........                                          ......++||.+++||++++++
T Consensus       358 ~~~~~l~~~~~~~~~~------------------------------------------~~~~~l~~Lr~i~~~G~~l~~~  395 (647)
T PTZ00237        358 KTIRYLIKTDPEATII------------------------------------------RSKYDLSNLKEIWCGGEVIEES  395 (647)
T ss_pred             HHHHHHHhhCcccccc------------------------------------------ccccCcchheEEEecCccCCHH
Confidence            9999887631110000                                          0011125899999999999999


Q ss_pred             HHHHHHhhcCCccccccCcccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccc---c
Q 006354          461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---N  536 (649)
Q Consensus       461 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~  536 (649)
                      +.+++++.+|+++++.||+||+++..+..... ....+++|+|+||++++|+| +++..   +++|+.|||+|+||   +
T Consensus       396 ~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~---~~~ge~GEl~v~~p~~p~  471 (647)
T PTZ00237        396 IPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKE---LNVNEIGEVAFKLPMPPS  471 (647)
T ss_pred             HHHHHHHhcCCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCC---CCCCCceEEEEeccCCch
Confidence            99999998999999999999998665433222 22348999999999999999 55554   67899999999986   8


Q ss_pred             ccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEE
Q 006354          537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLW  616 (649)
Q Consensus       537 v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~  616 (649)
                      ++.|||++++.|++.|.. .+  |||+|||+|++|+||+++|+||+||+||++ |+||+|.|||++|.+||.|. +|+|+
T Consensus       472 ~~~gy~~~~~~~~~~f~~-~~--g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~-G~rI~p~eIE~~l~~~p~V~-eaavv  546 (647)
T PTZ00237        472 FATTFYKNDEKFKQLFSK-FP--GYYNSGDLGFKDENGYYTIVSRSDDQIKIS-GNKVQLNTIETSILKHPLVL-ECCSI  546 (647)
T ss_pred             hhCceeCCHHHHHHHHhC-CC--CEEECCcEEEECCCCeEEEEeccCCEEEEC-CEEeCHHHHHHHHHhCCCce-eeEEE
Confidence            999999999999987741 14  899999999999999999999999999985 99999999999999999999 99999


Q ss_pred             ecCCCCcccchhhhhhhh
Q 006354          617 RNGPMKLASSTKIFQSCV  634 (649)
Q Consensus       617 g~~~~~~~~~~~~~~~~~  634 (649)
                      |.+++..|+.+.+++.+.
T Consensus       547 g~~~~~~g~~~~a~Vv~~  564 (647)
T PTZ00237        547 GIYDPDCYNVPIGLLVLK  564 (647)
T ss_pred             eeEcCCCCCEEEEEEEec
Confidence            999998887776665443

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=5.4e-64  Score=560.39  Aligned_cols=451  Identities=21%  Similarity=0.238  Sum_probs=360.4

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|+++++++|+++|+..            +++           .+||+||.++++++|++|.++|+++||+|+|
T Consensus         6 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v   62 (563)
T PLN02860          6 QAHICQCLTRLATLRGNAVVTIS------------GNR-----------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVAI   62 (563)
T ss_pred             hhHHHHHHHHHHHhcCCceEEec------------CCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            36899999999999999999974            333           6999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhh-ccCCCccEEEEecCCCCCc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS-SSLKTIKNVIYFENDGSEK  239 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~ii~~~~~~~~~  239 (649)
                      +++|+++++++++||+++|++++|+++.++++++.++++++++++++++.+.......+. ...+.++.++.+++.....
T Consensus        63 ~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  142 (563)
T PLN02860         63 AALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV  142 (563)
T ss_pred             EcCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccc
Confidence            999999999999999999999999999999999999999999999999876533333221 2334455555444321100


Q ss_pred             cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  319 (649)
                      ..      ......+.+++...............++++++|+|||||||.||||++||++++.........+ .+.++|+
T Consensus       143 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~d~  215 (563)
T PLN02860        143 FI------FLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-GYGEDDV  215 (563)
T ss_pred             cc------chhhccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-CCCCCCE
Confidence            00      0001112222211111111111234678999999999999999999999999998877776677 8889999


Q ss_pred             EEEccChHHHHHHHHHHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHh
Q 006354          320 YLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE  396 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  396 (649)
                      ++..+|++|++++...+.++..|+++++.   ++..+.+.           ++++++|+++++|+++..+.+....... 
T Consensus       216 ~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~~-  283 (563)
T PLN02860        216 YLHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAALQA-----------IKQHNVTSMITVPAMMADLISLTRKSMT-  283 (563)
T ss_pred             EEEecCchhhccHHHHHHHHHcCceEEecCCCCHHHHHHH-----------HHHhCCeeEEeChHHHHHHHHhhhhhhc-
Confidence            99999999999998888899999999884   33344444           9999999999999999988764211000 


Q ss_pred             hcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCcccc
Q 006354          397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ  475 (649)
Q Consensus       397 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~  475 (649)
                                                                  ....++||.+++||+++++++.+.|++.+ ++++++
T Consensus       284 --------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~  319 (563)
T PLN02860        284 --------------------------------------------WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFS  319 (563)
T ss_pred             --------------------------------------------cccccceeEEEeCCCcCCHHHHHHHHHhcCCCceec
Confidence                                                        01124899999999999999999999887 789999


Q ss_pred             ccCcccccccccccCCCC-----------------------CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEE
Q 006354          476 AYGLTETCAGSTFSEWDD-----------------------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV  532 (649)
Q Consensus       476 ~YG~TE~~~~~~~~~~~~-----------------------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v  532 (649)
                      .||+||++..++.....+                       ....++|+|+|+++++|++.+         +|+.|||+|
T Consensus       320 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~---------~g~~Gel~v  390 (563)
T PLN02860        320 AYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE---------SSRVGRILT  390 (563)
T ss_pred             CCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC---------CCceeEEEE
Confidence            999999976554332211                       112478999999999999832         468999999


Q ss_pred             ccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccc
Q 006354          533 GGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHH  612 (649)
Q Consensus       533 ~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~  612 (649)
                      +|++++.|||++|+.|++.|.  .+  |||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|. +
T Consensus       391 ~g~~~~~GY~~~~~~t~~~~~--~~--g~~~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~-~  464 (563)
T PLN02860        391 RGPHVMLGYWGQNSETASVLS--ND--GWLDTGDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVA-S  464 (563)
T ss_pred             ecCcccccccCCccccchhcc--CC--CeEEccceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcc-e
Confidence            999999999999999999886  56  89999999999999999999999999997 699999999999999999999 9


Q ss_pred             eEEEecCCCCcccchhhhhh
Q 006354          613 IRLWRNGPMKLASSTKIFQS  632 (649)
Q Consensus       613 ~~V~g~~~~~~~~~~~~~~~  632 (649)
                      |+|++.+++..++.+.++..
T Consensus       465 ~~v~~~~~~~~~~~~~a~v~  484 (563)
T PLN02860        465 VVVVGVPDSRLTEMVVACVR  484 (563)
T ss_pred             eEEEEEecCcCCceEEEEEE
Confidence            99999998887766655443

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=2.3e-63  Score=562.19  Aligned_cols=470  Identities=17%  Similarity=0.189  Sum_probs=369.5

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      +..+++|+++++++|+++|+++..          +.       .++.+.+||+||.++++++|++|+++|+++||+|+++
T Consensus        57 n~~~~~l~~~~~~~p~~~Al~~~~----------~~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~  119 (625)
T TIGR02188        57 NVSYNCVDRHLEARPDKVAIIWEG----------DE-------PGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIY  119 (625)
T ss_pred             EHHHHHHHHhhccCCCCeEEEEEc----------CC-------CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            567889989999999999998742          10       1334679999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh---------HHHHHHhhccCC-CccEEEE
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLK-TIKNVIY  231 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~~-~~~~ii~  231 (649)
                      ++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++..         .+.+.+.....+ .++.++.
T Consensus       120 ~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (625)
T TIGR02188       120 MPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLV  199 (625)
T ss_pred             CCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEE
Confidence            999999999999999999999999999999999999999999999998753         233444444445 5666666


Q ss_pred             ecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHH-Hhh
Q 006354          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI-KTL  310 (649)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~-~~~  310 (649)
                      ++...... .    .. ......++++..... ....+....++++++|+|||||||.||||+++|++++...... ...
T Consensus       200 ~~~~~~~~-~----~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~  272 (625)
T TIGR02188       200 VRRTGNPV-P----WV-EGRDVWWHDLMAKAS-AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYV  272 (625)
T ss_pred             EcCCCCCc-C----cc-ccccccHHHHHhhcC-CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhc
Confidence            54322110 0    00 011234555554322 1223345678999999999999999999999999987655443 334


Q ss_pred             CCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       311 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                      + .+.++|++++.+|++|+.+... ++.+|..|+++++.+.......    ...++..++++++|++.++|++++.+.+.
T Consensus       273 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  347 (625)
T TIGR02188       273 F-DIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPD----PGRFWEIIEKHKVTIFYTAPTAIRALMRL  347 (625)
T ss_pred             c-CCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCC----hhHHHHHHHHhCCeEEEeCHHHHHHHHhc
Confidence            5 8889999999999999988654 6788999999988432111100    12233449999999999999999988763


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      .....                                             ++...++||.+++||+++++++.+++.+.+
T Consensus       348 ~~~~~---------------------------------------------~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~  382 (625)
T TIGR02188       348 GDEWV---------------------------------------------KKHDLSSLRLLGSVGEPINPEAWMWYYKVV  382 (625)
T ss_pred             CCccc---------------------------------------------ccCCccceeEEEEecCCCCHHHHHHHHHHc
Confidence            21100                                             111225899999999999999999998887


Q ss_pred             C---CccccccCcccccccccccCC--CCCCCCccCCCcccceEEEEecCCCCcccCCC-CCCccEEEEcc--ccccccc
Q 006354          470 G---APIGQAYGLTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDK-PMPRGEIVVGG--FNVTAGY  541 (649)
Q Consensus       470 ~---~~l~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~-~g~~GEl~v~g--~~v~~gY  541 (649)
                      +   +++++.||+||+++.+.....  ....++++|+|++|++++|+| ++++.   ++ +|+.|||+|+|  |+++.||
T Consensus       383 ~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~---~~~~g~~GeL~v~~p~p~~~~gy  458 (625)
T TIGR02188       383 GKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNP---VEGPGEGGYLVIKQPWPGMLRTI  458 (625)
T ss_pred             CCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCC---CCCCCCeEEEEEccCCCcccccc
Confidence            5   789999999999876554332  234568899999999999999 66654   56 88999999999  6899999


Q ss_pred             cCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCC
Q 006354          542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPM  621 (649)
Q Consensus       542 ~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~  621 (649)
                      |++++.+.+.+....+  |||+|||+|++|+||+++|+||+||+||++ |++|+|.|||++|.+||.|. +|+|+|.+++
T Consensus       459 ~~~~~~~~~~~~~~~~--g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~-G~ri~p~eIE~~l~~~p~V~-e~~vvg~~~~  534 (625)
T TIGR02188       459 YGDHERFVDTYFSPFP--GYYFTGDGARRDKDGYIWITGRVDDVINVS-GHRLGTAEIESALVSHPAVA-EAAVVGIPDD  534 (625)
T ss_pred             cCChHHHHHHHhccCC--CEEECCceEEEcCCCcEEEEecccCEEEeC-CEEECHHHHHHHHHhCCCcc-eEEEEeeEcC
Confidence            9999988888753234  899999999999999999999999999985 99999999999999999999 9999999998


Q ss_pred             Ccccchhhhhhh
Q 006354          622 KLASSTKIFQSC  633 (649)
Q Consensus       622 ~~~~~~~~~~~~  633 (649)
                      ..|+.+.++..+
T Consensus       535 ~~g~~~~a~vv~  546 (625)
T TIGR02188       535 IKGQAIYAFVTL  546 (625)
T ss_pred             CCCeEEEEEEEe
Confidence            877766555443

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-63  Score=553.67  Aligned_cols=445  Identities=18%  Similarity=0.231  Sum_probs=367.6

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .++.++|+++++++||++|++.            +++           .+||+||.++++++|++|++.|+++||+|+|+
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~  105 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALID------------ERG-----------TLTYAELDEQSNALARGLLALGVRAGDGVAVL  105 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEE------------CCC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            4899999999999999999985            222           59999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++++++++||+++|+++||+++.++.+++.+++++++++++|++.+..+.+..+....+.++.++.......    
T Consensus       106 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  181 (549)
T PRK07788        106 ARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDE----  181 (549)
T ss_pred             cCCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccc----
Confidence            9999999999999999999999999999999999999999999999998887777665444444444433222111    


Q ss_pred             CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 006354          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  321 (649)
                           +....+.+++++......   .+.+...++.++|+|||||||.||||+++|+++.+.+......+ .+..+|+++
T Consensus       182 -----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~  252 (549)
T PRK07788        182 -----PSGSTDETLDDLIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-PFRAGETTL  252 (549)
T ss_pred             -----cCCcCcccHHHHhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-CCCcCCeEE
Confidence                 001234567776654322   12233467889999999999999999999999999988887777 888999999


Q ss_pred             EccChHHHHHHHHHHHHHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhc
Q 006354          322 AYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (649)
Q Consensus       322 ~~~pl~h~~~~~~~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~  398 (649)
                      ..+|++|.+++...+.++..|+++++   +++..+.+.           ++++++|++.++|+++..+.+.......   
T Consensus       253 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~~---  318 (549)
T PRK07788        253 LPAPMFHATGWAHLTLAMALGSTVVLRRRFDPEATLED-----------IAKHKATALVVVPVMLSRILDLGPEVLA---  318 (549)
T ss_pred             EccchHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEEHHHHHHHHHhCcccccC---
Confidence            99999999999877889999999988   344455554           9999999999999999988763221000   


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccC
Q 006354          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (649)
Q Consensus       399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (649)
                                                                ....++||.+++||+++++++.+++.+.+++++++.||
T Consensus       319 ------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG  356 (549)
T PRK07788        319 ------------------------------------------KYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYG  356 (549)
T ss_pred             ------------------------------------------CCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccC
Confidence                                                      00114899999999999999999999989999999999


Q ss_pred             cccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCC
Q 006354          479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER  557 (649)
Q Consensus       479 ~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~  557 (649)
                      +||++..+...... ....+++|+|++|++++|+| +++..   ++.|+.|||+|+|+.++.||+++++.  + +   .+
T Consensus       357 ~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~---~~  426 (549)
T PRK07788        357 STEVAFATIATPEDLAEAPGTVGRPPKGVTVKILD-ENGNE---VPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I---ID  426 (549)
T ss_pred             cchhchhhccChhhhhhcCCCcccCCCCcEEEEEC-CCcCC---CCCCCeEEEEEeCCCccccccCCCcc--c-c---cC
Confidence            99988655443322 23457899999999999999 45543   67899999999999999999998875  2 2   44


Q ss_pred             cccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhh
Q 006354          558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQS  632 (649)
Q Consensus       558 ~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~  632 (649)
                        |||+|||+|++|+||+++|.||.||+||+ +|++|+|.+||++|.+||+|. +|+|++..++..++...++..
T Consensus       427 --g~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~~~V~-~~~v~~~~~~~~g~~~~a~vv  497 (549)
T PRK07788        427 --GLLSSGDVGYFDEDGLLFVDGRDDDMIVS-GGENVFPAEVEDLLAGHPDVV-EAAVIGVDDEEFGQRLRAFVV  497 (549)
T ss_pred             --CceecCceEEEcCCCCEEEeccCcceEEE-CCEEECHHHHHHHHHhCCCee-EEEEECCcCcccccEEEEEEE
Confidence              89999999999999999999999999997 699999999999999999999 999999998887766655443

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=3.6e-63  Score=561.73  Aligned_cols=475  Identities=16%  Similarity=0.153  Sum_probs=361.7

Q ss_pred             CCHHHHHHHHHH-hCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           82 STMAALFEQSCK-SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        82 ~tl~~~~~~~a~-~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      +....+|+++++ .+|+++|+++..          +.       .+..+.+||+||.++++++|++|+++|+++||+|+|
T Consensus        88 N~~~~~l~~~~~~~~~~~~Al~~~~----------~~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i  150 (666)
T PLN02654         88 NICYNCLDRNVEAGNGDKIAIYWEG----------NE-------PGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVI  150 (666)
T ss_pred             eHHHHHHHHhhccCCCCCEEEEEEc----------CC-------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            455788888876 489999998731          11       123357999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHH---------HHHHhhccC----CCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK---------KLSAVSSSL----KTIK  227 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~l~~~~~~~----~~~~  227 (649)
                      +++|++++++++|||+++|++++|+++.++++++.+++++++++++|++.....         .+..+....    ..+.
T Consensus       151 ~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  230 (666)
T PLN02654        151 YLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVG  230 (666)
T ss_pred             EcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCcc
Confidence            999999999999999999999999999999999999999999999999876421         122221111    1112


Q ss_pred             EEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHH-HHH
Q 006354          228 NVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAA  306 (649)
Q Consensus       228 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~-~~~  306 (649)
                      .++............ .... ......|+++.... ....+.....++|+++|+|||||||.||||+++|++++.. ...
T Consensus       231 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~  307 (666)
T PLN02654        231 ICLTYENQLAMKRED-TKWQ-EGRDVWWQDVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATT  307 (666)
T ss_pred             EEEEecccccccccc-cccc-cCCcccHHHHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHH
Confidence            222222111000000 0000 01123355544321 1112223457899999999999999999999999998654 344


Q ss_pred             HHhhCCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHH
Q 006354          307 IKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR  385 (649)
Q Consensus       307 ~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~  385 (649)
                      ....+ .++++|++++++|++|+++... ++.+|+.|+++++.+.......    ...++..|+++++|+++++|++++.
T Consensus       308 ~~~~~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~  382 (666)
T PLN02654        308 FKYAF-DYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPD----SGRCWDIVDKYKVTIFYTAPTLVRS  382 (666)
T ss_pred             HHHhc-CCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHH
Confidence            55566 8899999999999999998765 6788999999998432211111    1223344999999999999999998


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHH
Q 006354          386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI  465 (649)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~  465 (649)
                      |.+......                                             .+...++||.++++|+++++++.+++
T Consensus       383 l~~~~~~~~---------------------------------------------~~~~l~~Lr~i~~~Ge~l~~~~~~~~  417 (666)
T PLN02654        383 LMRDGDEYV---------------------------------------------TRHSRKSLRVLGSVGEPINPSAWRWF  417 (666)
T ss_pred             HHhhCcccc---------------------------------------------ccCChhheeEEEEecCCCCHHHHHHH
Confidence            876321100                                             01112489999999999999999999


Q ss_pred             HhhcC---CccccccCcccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcc--cccc
Q 006354          466 NICMG---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVT  538 (649)
Q Consensus       466 ~~~~~---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~  538 (649)
                      .+.+|   +++.+.||+||+++........  ...++++|+|+||++++|+| ++++.   ++.++.|||+|++  |+++
T Consensus       418 ~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~---~~~~~~Gel~v~~~~p~~~  493 (666)
T PLN02654        418 FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKE---IEGECSGYLCVKKSWPGAF  493 (666)
T ss_pred             HHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCC---CCCCCceEEEEcCCCchhh
Confidence            98887   7899999999998765543322  34568999999999999999 55554   5677889999999  7999


Q ss_pred             ccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEec
Q 006354          539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRN  618 (649)
Q Consensus       539 ~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~  618 (649)
                      .|||+|++.+.+.|....+  |||+|||+|++|+||+++|+||+||+||++ |+||+|.|||++|.+||+|. +|+|+|.
T Consensus       494 ~gy~~~~~~~~~~~~~~~~--g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~-G~ri~p~EIE~~l~~~p~V~-eaaVvg~  569 (666)
T PLN02654        494 RTLYGDHERYETTYFKPFA--GYYFSGDGCSRDKDGYYWLTGRVDDVINVS-GHRIGTAEVESALVSHPQCA-EAAVVGI  569 (666)
T ss_pred             hhhcCChHHHHHhhhhcCC--CEEEeCceEEECCCCcEEEeeeccCeEEeC-CEEECHHHHHHHHHhCCCee-eEEEEee
Confidence            9999999999887742224  899999999999999999999999999985 99999999999999999999 9999999


Q ss_pred             CCCCcccchhhhhhhh
Q 006354          619 GPMKLASSTKIFQSCV  634 (649)
Q Consensus       619 ~~~~~~~~~~~~~~~~  634 (649)
                      +++..|+.+.++..+.
T Consensus       570 ~d~~~ge~~~a~Vvl~  585 (666)
T PLN02654        570 EHEVKGQGIYAFVTLV  585 (666)
T ss_pred             EcCCCCeEEEEEEEEC
Confidence            9998887776665543

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.6e-63  Score=558.12  Aligned_cols=467  Identities=18%  Similarity=0.215  Sum_probs=366.2

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 006354           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (649)
Q Consensus        83 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (649)
                      ...++|+++++++|+++|+++.+          +.       .+..+.+||+||.++++++|++|+++|+++||+|+|++
T Consensus        68 ~~~~~l~~~~~~~p~~~Al~~~~----------~~-------~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~  130 (637)
T PRK00174         68 VSYNCLDRHLKTRGDKVAIIWEG----------DD-------PGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYM  130 (637)
T ss_pred             HHHHHHHHhhccCCCCeEEEEEC----------CC-------CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            35778888999999999998742          10       12335799999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH---------HHHHHhhccCCCccEEEEec
Q 006354          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLKTIKNVIYFE  233 (649)
Q Consensus       163 ~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~~~~~ii~~~  233 (649)
                      +|++++++++|||+++|++++|++|.++++++.+++++++++++|+++...         +.+.......+.++.++.++
T Consensus       131 ~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (637)
T PRK00174        131 PMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVR  210 (637)
T ss_pred             CCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEc
Confidence            999999999999999999999999999999999999999999999976532         33334444455667777665


Q ss_pred             CCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHH-HHhhCC
Q 006354          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTLIP  312 (649)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~  312 (649)
                      ......     ... ......++++.... ..........++|+++|+|||||||.||||+++|++++..+.. ....+ 
T Consensus       211 ~~~~~~-----~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-  282 (637)
T PRK00174        211 RTGGDV-----DWV-EGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-  282 (637)
T ss_pred             CCCCCc-----CcC-CCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-
Confidence            432110     000 01123455655432 2222234456789999999999999999999999998765543 33445 


Q ss_pred             CCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcc-cccccchhhccCccccceeecceEEEechHHHHHHHHHH
Q 006354          313 NPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTL-TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (649)
Q Consensus       313 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~-~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~  390 (649)
                      .+.++|++++.+|++|+.+... ++.+|..|+++++.+.. ...+     ...++..++++++|++.++|++++.+.+..
T Consensus       283 ~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  357 (637)
T PRK00174        283 DYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPD-----PGRFWEVIDKHKVTIFYTAPTAIRALMKEG  357 (637)
T ss_pred             CCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCC-----hHHHHHHHHhcCCeEEeecHHHHHHHHhcC
Confidence            7888999999999999988754 77889999999883321 1111     122333499999999999999999887632


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC
Q 006354          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG  470 (649)
Q Consensus       391 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~  470 (649)
                      ....                                             +....++||.+++||+++++++.+++.+.++
T Consensus       358 ~~~~---------------------------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~  392 (637)
T PRK00174        358 DEHP---------------------------------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVG  392 (637)
T ss_pred             Cccc---------------------------------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhC
Confidence            1100                                             0111248999999999999999999988775


Q ss_pred             ---CccccccCcccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcc--ccccccccC
Q 006354          471 ---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYFN  543 (649)
Q Consensus       471 ---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY~~  543 (649)
                         +++++.||+||++..+......  ....+++|+|++|++++|+| +++..   ++.|+.|||+|+|  ++++.|||+
T Consensus       393 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~---~~~g~~Gel~v~g~~p~~~~gy~~  468 (637)
T PRK00174        393 GERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNP---LEGGEGGNLVIKDPWPGMMRTIYG  468 (637)
T ss_pred             CCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCC---CCCCCcEEEEEcCCCCcccccccC
Confidence               7899999999998765543322  23457899999999999999 55543   6789999999999  699999999


Q ss_pred             CCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCc
Q 006354          544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKL  623 (649)
Q Consensus       544 ~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~  623 (649)
                      +++.+.+.+....+  |||+|||+|++|+||+++|+||+||+||++ |++|+|.|||++|.+||+|. +|+|+|.+++..
T Consensus       469 ~~~~~~~~~~~~~~--g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~-G~~v~p~eIE~~l~~~~~V~-~~~Vvg~~~~~~  544 (637)
T PRK00174        469 DHERFVKTYFSTFK--GMYFTGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKVA-EAAVVGRPDDIK  544 (637)
T ss_pred             CHHHHHHhhhcCCC--CEEECCceEEEcCCCcEEEEEecccEEEeC-CEEECHHHHHHHHHhCCCcc-eEEEEeeEcCCC
Confidence            99988887753234  899999999999999999999999999985 99999999999999999999 999999998887


Q ss_pred             ccchhhhhh
Q 006354          624 ASSTKIFQS  632 (649)
Q Consensus       624 ~~~~~~~~~  632 (649)
                      |+.+.++..
T Consensus       545 g~~~~a~vv  553 (637)
T PRK00174        545 GQGIYAFVT  553 (637)
T ss_pred             CeEEEEEEE
Confidence            766655443

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.6e-64  Score=656.84  Aligned_cols=491  Identities=19%  Similarity=0.232  Sum_probs=402.7

Q ss_pred             CcccccccccCCCccceehheeeecceeEeeehhccccccccccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHH
Q 006354            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (649)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (649)
                      .||+++|++..+..|..++..+++.+    +++  |...   +.+++++...+++.+....+   ....+++...+++++
T Consensus      1512 ~y~~~lf~~~~i~~l~~~~~~lL~~l----~~~--p~~~---~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 1579 (3956)
T PRK12467       1512 TYATDLFEASTIERLAGHWLNLLQGL----VAD--PERR---LGELDLLDEAERRQILEGWN---ATHTGYPLARLVHQL 1579 (3956)
T ss_pred             EEeCCcCCHHHHHHHHHHHHHHHHHH----hhC--ccCc---eeeccccchHHhhhhHHhhc---CCccCCCccccHHHH
Confidence            79999999999999999998888844    344  7777   88899999999888765433   122334445799999


Q ss_pred             HHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH
Q 006354           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (649)
Q Consensus        88 ~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~  167 (649)
                      |+++++++|+++|+.+            +++           .+||+||.++++++|++|+++|+++|++|+|+++|+++
T Consensus      1580 ~~~~a~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~ 1636 (3956)
T PRK12467       1580 IEDQAAATPEAVALVF------------GEQ-----------ELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLE 1636 (3956)
T ss_pred             HHHHHHhCCCCeEEEe------------CCc-----------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHH
Confidence            9999999999999986            332           59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCC
Q 006354          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (649)
Q Consensus       168 ~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~  247 (649)
                      +++++|||+++|+++||+||.+|.+++.+++++++++++|++......+..    ....+ ++.++...           
T Consensus      1637 ~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~----~~~~~-~~~~~~~~----------- 1700 (3956)
T PRK12467       1637 MVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPL----PDGLR-SLVLDQED----------- 1700 (3956)
T ss_pred             HHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCcc----ccCCc-EEEecccc-----------
Confidence            999999999999999999999999999999999999999998775443321    11111 22222110           


Q ss_pred             CCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChH
Q 006354          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (649)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (649)
                               ++.. ......+.....++++|||+|||||||.||||+++|+++++.+.+....+ +++++|++++++|++
T Consensus      1701 ---------~~~~-~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~ 1769 (3956)
T PRK12467       1701 ---------DWLE-GYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-QLSAADVVLQFTSFA 1769 (3956)
T ss_pred             ---------chhc-cCCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-CCCcccEEEEecCcc
Confidence                     0000 01111222345689999999999999999999999999999999998888 899999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 006354          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (649)
Q Consensus       328 h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (649)
                      |+++++.++.+|+.|+++++.++....+.     ..+...++++++|++.++|++++.+.......              
T Consensus      1770 fd~~~~~~~~~L~~G~~lvi~~~~~~~~~-----~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~-------------- 1830 (3956)
T PRK12467       1770 FDVSVWELFWPLINGARLVIAPPGAHRDP-----EQLIQLIERQQVTTLHFVPSMLQQLLQMDEQV-------------- 1830 (3956)
T ss_pred             HHHHHHHHHHHHhCCCEEEEcChhhcCCH-----HHHHHHHHHcCCeEEECCHHHHHHHHhhcccc--------------
Confidence            99999999999999999999654332221     22333499999999999999999887531100              


Q ss_pred             HHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccCcccccccc
Q 006354          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGS  486 (649)
Q Consensus       408 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~  486 (649)
                                                        ...++||.+++|||++++++.+.|.+.+ +..++|.||+||+++.+
T Consensus      1831 ----------------------------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~ 1876 (3956)
T PRK12467       1831 ----------------------------------EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDV 1876 (3956)
T ss_pred             ----------------------------------ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeE
Confidence                                              0114899999999999999988887765 57899999999999877


Q ss_pred             cccCCC-----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCC---c
Q 006354          487 TFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER---G  558 (649)
Q Consensus       487 ~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~---~  558 (649)
                      +.....     .....++|+|++|++++|+| ++++.   ++.|..|||+|+|+++++||+|+|+.|+++|..++.   +
T Consensus      1877 t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~---vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~ 1952 (3956)
T PRK12467       1877 THWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASLNP---VPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVG 1952 (3956)
T ss_pred             EEEeccccccccCCCCCcccccCCCEEEEEC-CCCCC---CCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCC
Confidence            654322     12347899999999999998 55443   789999999999999999999999999999975432   4


Q ss_pred             ccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecC
Q 006354          559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNG  619 (649)
Q Consensus       559 ~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~  619 (649)
                      .+||||||+|++++||.|+|+||+||+||++ |+||+|+|||++|.+||+|. +|+|++.+
T Consensus      1953 ~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~-G~rIel~eIE~~l~~~p~V~-~a~vv~~~ 2011 (3956)
T PRK12467       1953 SRLYRTGDLARYRADGVIEYLGRIDHQVKIR-GFRIELGEIEARLREQGGVR-EAVVIAQD 2011 (3956)
T ss_pred             ccceeccceEEECCCCCEEEecccCceEEeC-eEEechHHHHHHHHhCCCcc-eEEEEEec
Confidence            5799999999999999999999999999996 99999999999999999999 99999986

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=8.7e-63  Score=546.86  Aligned_cols=436  Identities=22%  Similarity=0.262  Sum_probs=348.6

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..++.+.|.+.++++|+++|+...           ++           +.+||+||.++++++|+.|.+.   +||+|+|
T Consensus        18 ~~~~~~~~~~~~~~~p~~~a~~~~-----------~~-----------~~~Ty~el~~~~~~lA~~L~~~---~gd~Val   72 (539)
T PRK06334         18 GKTVLESFLKLCSEMTTATVCWDE-----------QL-----------GKLSYNQVRKAVIALATKVSKY---PDQHIGI   72 (539)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC-----------CC-----------CcccHHHHHHHHHHHHHHHhhc---cCCeEEE
Confidence            378999999999999999998742           21           2589999999999999999873   8999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccC-CCccEEEEecCCCCCc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSL-KTIKNVIYFENDGSEK  239 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~-~~~~~ii~~~~~~~~~  239 (649)
                      +++|++++++++|||+++|++++|+++.++.+++.++|++++++++|++.+....+.++.... .....++.+++...  
T Consensus        73 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--  150 (539)
T PRK06334         73 MMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRK--  150 (539)
T ss_pred             EcCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhh--
Confidence            999999999999999999999999999999999999999999999999988776665543211 11113333332110  


Q ss_pred             cCCCCCCCCCceEeehHHHHhcC-----CC----CCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhh
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLG-----KR----SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL  310 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~  310 (649)
                                  ...+.+.....     ..    .........++++|+|+|||||||.||||++||+++.+........
T Consensus       151 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  218 (539)
T PRK06334        151 ------------ELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKF  218 (539)
T ss_pred             ------------hccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh
Confidence                        00001100000     00    0001224567999999999999999999999999999988887777


Q ss_pred             CCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeC----CcccccccchhhccCccccceeecceEEEechHHHHH
Q 006354          311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR  385 (649)
Q Consensus       311 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~  385 (649)
                      + .++++|++++++|++|.+++.. ++.++..|+++++.    ++..+.+.           |+++++|++.++|++++.
T Consensus       219 ~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~  286 (539)
T PRK06334        219 F-SPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEM-----------IDEAKVTFLGSTPVFFDY  286 (539)
T ss_pred             c-CCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHH-----------HHHhCCcEEEecHHHHHH
Confidence            7 8889999999999999999865 67789999999873    33344444           999999999999999999


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHH
Q 006354          386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI  465 (649)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~  465 (649)
                      +.+......                                               ...++||.+++||+++++++.+++
T Consensus       287 l~~~~~~~~-----------------------------------------------~~~~~lr~i~~gG~~l~~~~~~~~  319 (539)
T PRK06334        287 ILKTAKKQE-----------------------------------------------SCLPSLRFVVIGGDAFKDSLYQEA  319 (539)
T ss_pred             HHHhhhhcc-----------------------------------------------cccccccEEEECCccCCHHHHHHH
Confidence            876432110                                               011489999999999999999999


Q ss_pred             Hhhc-CCccccccCcccccccccccCCCC-CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccC
Q 006354          466 NICM-GAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN  543 (649)
Q Consensus       466 ~~~~-~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~  543 (649)
                      .+.+ ++.+++.||+||++.+++...... ...+++|+|++|++++|+|.+++..   +++|+.|||+|+|++++.|||+
T Consensus       320 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~---~~~g~~Gel~v~g~~~~~GY~~  396 (539)
T PRK06334        320 LKTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVP---VSSGETGLVLTRGTSLFSGYLG  396 (539)
T ss_pred             HHHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCcc---CCCCceEEEEEecCcccccccC
Confidence            9887 689999999999987776554332 2346899999999999998554443   7899999999999999999999


Q ss_pred             CCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccc------eEEEe
Q 006354          544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHH------IRLWR  617 (649)
Q Consensus       544 ~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~------~~V~g  617 (649)
                      +|+.+....   .++.+||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|. +      ++|+|
T Consensus       397 ~~~~~~~~~---~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~-~~~~~~~~~v~~  471 (539)
T PRK06334        397 EDFGQGFVE---LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQN-AADHAGPLVVCG  471 (539)
T ss_pred             Cccccccee---eCCceeEECCCEEEECCCCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCc-cccccCceEEEc
Confidence            998754322   233489999999999999999999999999997 599999999999999999999 7      78888


Q ss_pred             cCCCC
Q 006354          618 NGPMK  622 (649)
Q Consensus       618 ~~~~~  622 (649)
                      .++..
T Consensus       472 ~~~~~  476 (539)
T PRK06334        472 LPGEK  476 (539)
T ss_pred             CCCCc
Confidence            77653

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=7.8e-63  Score=557.30  Aligned_cols=472  Identities=16%  Similarity=0.162  Sum_probs=364.4

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      +.++++|+++++++|+++|+++.+           ..      .+..+.+||+||.++++++|++|+++|+++||+|+|+
T Consensus        52 n~~~~~l~~~~~~~p~~~Al~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~  114 (628)
T TIGR02316        52 NLCHNALDRHLDERGEQLALVTVS-----------SE------TGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIY  114 (628)
T ss_pred             eHHHHHHHHHhCcCCCCeEEEEEc-----------CC------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            556889999999999999998742           10      1233579999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh---------HHHHHHhhcc-CCCccEEEE
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSS-LKTIKNVIY  231 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~-~~~~~~ii~  231 (649)
                      ++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++..         .+.+..+... ......++.
T Consensus       115 ~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  194 (628)
T TIGR02316       115 MPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLL  194 (628)
T ss_pred             cCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEE
Confidence            999999999999999999999999999999999999999999999997642         2223332222 133456666


Q ss_pred             ecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHH-HHHHHhh
Q 006354          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAAIKTL  310 (649)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~-~~~~~~~  310 (649)
                      ++......    ...  .....+++++.........+.....++++++|+|||||||.||||+++|++++.. .......
T Consensus       195 ~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~  268 (628)
T TIGR02316       195 VDRGLAPM----RLI--PGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAI  268 (628)
T ss_pred             EeCCCCCc----Ccc--cCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHh
Confidence            65321110    000  0012345665443222222223346799999999999999999999999997644 4444555


Q ss_pred             CCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       311 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                      + .++++|++++.+|++|+.+... ++.+|+.|+++++.+.......    ...++..++++++|+++++|++++.+.+.
T Consensus       269 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  343 (628)
T TIGR02316       269 F-GIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPD----PGVWWSIVERYGVRTMFSAPTAIRVLKKQ  343 (628)
T ss_pred             c-CCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHHHHhc
Confidence            6 8889999999999999988654 7788999999998442211111    12233449999999999999999887653


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      ....                                             .+....++||.+++||+++++++.++++..+
T Consensus       344 ~~~~---------------------------------------------~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~  378 (628)
T TIGR02316       344 DAAW---------------------------------------------LRKHDLSSLHWLFLAGEPLDEPTAHWITDGL  378 (628)
T ss_pred             CCcc---------------------------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHh
Confidence            1100                                             0111225899999999999999999999988


Q ss_pred             CCccccccCcccccccccccCC----CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccc---ccccccc
Q 006354          470 GAPIGQAYGLTETCAGSTFSEW----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYF  542 (649)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~----~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~v~~gY~  542 (649)
                      +.++++.||+||++..++....    .....+++|+|+||++++|+|.++++.   ++.|+.|||+|+||   +.+.|||
T Consensus       379 ~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~---~~~g~~Gel~v~gp~~~g~~~~~~  455 (628)
T TIGR02316       379 GKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRP---CGPNEKGVLTVVPPLPPGCLSTVW  455 (628)
T ss_pred             CCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCC---CCCCCcEEEEEecCCCcccccccc
Confidence            9999999999999854432221    123458899999999999999545654   67899999999998   5789999


Q ss_pred             CCCccchhhhccC-CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCC
Q 006354          543 NNPGKTSEVYKVD-ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPM  621 (649)
Q Consensus       543 ~~~~~t~~~f~~~-~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~  621 (649)
                      ++++.+.+.+... .+  +||+|||+|++|+||+++|+||.||+||++ |+||+|.|||++|.+||+|. +|+|+|.+++
T Consensus       456 ~~~~~~~~~~~~~~~~--~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~-G~rv~~~eIE~~l~~~p~V~-ea~Vvg~~d~  531 (628)
T TIGR02316       456 GDDARFLKTYWSHFKR--PLYSSFDWGIRDEDGYTFILGRTDDVINVA-GHRLGTREIEESVSSHPSVA-EVAVVGVHDE  531 (628)
T ss_pred             CChHHHHHhhhhcCCC--CEEECCceEEEcCCCcEEEEEcCcceEEeC-CEEeCHHHHHHHHHhCCCcc-eEEEEeeecC
Confidence            9998887765321 23  799999999999999999999999999985 99999999999999999999 9999999999


Q ss_pred             Ccccchhhhhhh
Q 006354          622 KLASSTKIFQSC  633 (649)
Q Consensus       622 ~~~~~~~~~~~~  633 (649)
                      ..|+.+.+++.+
T Consensus       532 ~~g~~~~~~vv~  543 (628)
T TIGR02316       532 LKGQVAVVFAIL  543 (628)
T ss_pred             CCCeEEEEEEEE
Confidence            888776665543

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.9e-64  Score=662.07  Aligned_cols=492  Identities=20%  Similarity=0.237  Sum_probs=403.6

Q ss_pred             CcccccccccCCCccceehheeeecceeEeeehhccccccccccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHH
Q 006354            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (649)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (649)
                      +||+++|++..+..|..++..++..+    ++.  |...   +..++++...+++.+....+   ....+++...+++++
T Consensus      3658 ~y~~~~~~~~~~~~l~~~f~~~L~~l----~~~--~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 3725 (4334)
T PRK05691       3658 SYDQRYFDAPTVERLLGEFKRLLLAL----VQG--FHGD---LSELPLLGEQERDFLLDGCN---RSERDYPLEQSYVRL 3725 (4334)
T ss_pred             EEchhhCCHHHHHHHHHHHHHHHHHH----HhC--cCCC---hhhcCCCCHHHHHHHHHhhC---CccCCCccccCHHHH
Confidence            79999999999999999999888844    233  6666   88999998888776655433   123444556799999


Q ss_pred             HHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH
Q 006354           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (649)
Q Consensus        88 ~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~  167 (649)
                      |+++++++|+++|+.+.           ++            .+||+||.++++++|++|+++|+++|++|+|+++++++
T Consensus      3726 ~~~~~~~~p~~~Av~~~-----------~~------------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~ 3782 (4334)
T PRK05691       3726 FEAQVAAHPQRIAASCL-----------DQ------------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLD 3782 (4334)
T ss_pred             HHHHHHhCCCceEEEcC-----------CC------------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence            99999999999999874           44            49999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCc--cEEEEecCCCCCccCCCCC
Q 006354          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIYFENDGSEKDSGVSG  245 (649)
Q Consensus       168 ~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~--~~ii~~~~~~~~~~~~~~~  245 (649)
                      +++++|||+++|+++|||||.+|.+++.+++++++++++|++.........+.......  ..++..             
T Consensus      3783 ~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 3849 (4334)
T PRK05691       3783 LLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVW------------- 3849 (4334)
T ss_pred             HHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeee-------------
Confidence            99999999999999999999999999999999999999999987665444333222111  111111             


Q ss_pred             CCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccC
Q 006354          246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLP  325 (649)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~p  325 (649)
                                ++..........+.....++++|||+|||||||.||||+++|+++++.+.+....+ .++++|+++++.|
T Consensus      3850 ----------~~~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-~~~~~~~~~~~~s 3918 (4334)
T PRK05691       3850 ----------EEVQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-ALSEADVIAQTAS 3918 (4334)
T ss_pred             ----------cccccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-CCCccceEEEecC
Confidence                      11111111111223445789999999999999999999999999999999998888 9999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHH
Q 006354          326 LAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLF  405 (649)
Q Consensus       326 l~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~  405 (649)
                      ++|+.+++.++.+|..|+++++.+.....+.     ..+...++++++|++.++|+++..+.......            
T Consensus      3919 ~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~-----~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~~------------ 3981 (4334)
T PRK05691       3919 QSFDISVWQFLAAPLFGARVEIVPNAIAHDP-----QGLLAHVQAQGITVLESVPSLIQGMLAEDRQA------------ 3981 (4334)
T ss_pred             CchhHHHHHHHHHHhCCCEEEEcCccccCCH-----HHHHHHHHHcCCeEEEeCHHHHHHHHhhcccc------------
Confidence            9999999999999999999999554332221     12333399999999999999998876421100            


Q ss_pred             HHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccCcccccc
Q 006354          406 NIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCA  484 (649)
Q Consensus       406 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~  484 (649)
                                                            .++||.+++|||++++++.+.|.+.. +++++|.||+|||+.
T Consensus      3982 --------------------------------------~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~ 4023 (4334)
T PRK05691       3982 --------------------------------------LDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSD 4023 (4334)
T ss_pred             --------------------------------------CCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCcccee
Confidence                                                  13799999999999999988887654 789999999999998


Q ss_pred             cccccCCC----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC---C
Q 006354          485 GSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE---R  557 (649)
Q Consensus       485 ~~~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~---~  557 (649)
                      .+++....    .....++|+|++|++++|+| +.+..   +|.|.+|||+|+|+++++||+|+|++|+++|..++   +
T Consensus      4024 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~---~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~ 4099 (4334)
T PRK05691       4024 DVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALEL---VPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAP 4099 (4334)
T ss_pred             EEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCC---CCCCCceEEEEecccccccccCCcccchhhcccCCCCCC
Confidence            77654432    12346899999999999998 44443   78999999999999999999999999999998643   3


Q ss_pred             cccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecC
Q 006354          558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNG  619 (649)
Q Consensus       558 ~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~  619 (649)
                      +++||||||+|++++||+|+|+||+|++||++ |+||+++|||++|.++|+|. +|+|+...
T Consensus      4100 ~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~-G~riel~eIE~~l~~~~~v~-~a~v~~~~ 4159 (4334)
T PRK05691       4100 GERLYRTGDLARRRSDGVLEYVGRIDHQVKIR-GYRIELGEIEARLHEQAEVR-EAAVAVQE 4159 (4334)
T ss_pred             CceeeccCcceeecCCCcEEEecccCCcEEec-eEEecHHHHHHHHHhCCCcc-EEEEEEec
Confidence            56899999999999999999999999999996 99999999999999999999 98887543

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.8e-62  Score=552.87  Aligned_cols=452  Identities=21%  Similarity=0.309  Sum_probs=353.8

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|+++++++|+++|+.+.+           .       .+.++++||+||.++++++|++|.++|+++||+|+|
T Consensus        38 ~~~l~~~l~~~a~~~p~~~a~~~~~-----------~-------~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai   99 (614)
T PRK08180         38 PRRLTDRLVHWAQEAPDRVFLAERG-----------A-------DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMI   99 (614)
T ss_pred             CccHHHHHHHHHHHCCCCceeeecc-----------C-------CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            4689999999999999999998631           1       123457999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCC-----HHHHHHHHhhcCceEEEECchh--HHHHHHhhccCCCccEEEEec
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLG-----EDALIHSLNETQVTTLICDSKQ--LKKLSAVSSSLKTIKNVIYFE  233 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~-----~~~l~~~l~~~~~~~vi~~~~~--~~~l~~~~~~~~~~~~ii~~~  233 (649)
                      +++|+++|+++++||+++|+++||++|.++     .+++.+++++++++++|++...  ...+.....  ... .++..+
T Consensus       100 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~  176 (614)
T PRK08180        100 LSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVR  176 (614)
T ss_pred             ecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEec
Confidence            999999999999999999999999999998     7999999999999999998642  222222111  112 233322


Q ss_pred             CCCCCccCCCCCCCCCceEeehHHHHhcCCCCC--CCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC
Q 006354          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI  311 (649)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~  311 (649)
                      ....           .....+++++........  .......++|+++|+|||||||.||||++||+++++.+......+
T Consensus       177 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~  245 (614)
T PRK08180        177 GAVP-----------GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF  245 (614)
T ss_pred             CCCC-----------CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc
Confidence            1100           011245666554321111  111234679999999999999999999999999999888877766


Q ss_pred             CCCC--CCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354          312 PNPG--RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (649)
Q Consensus       312 ~~~~--~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~  388 (649)
                       .+.  .++++++++|++|.+++.. ++.+++.|+++++.+.......    ...++..++++++|+++++|.++..|.+
T Consensus       246 -~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~----~~~~l~~i~~~~~t~~~~vP~~~~~l~~  320 (614)
T PRK08180        246 -PFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGG----FDETLRNLREISPTVYFNVPKGWEMLVP  320 (614)
T ss_pred             -cccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchh----HHHHHHHHHHhCCcEEechHHHHHHHHH
Confidence             443  5689999999999999765 6678999999988432100000    0112333889999999999999999877


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (649)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~  468 (649)
                      ......                                           ..++.++++||.+++||+++++++.+++++.
T Consensus       321 ~~~~~~-------------------------------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~  357 (614)
T PRK08180        321 ALERDA-------------------------------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDRV  357 (614)
T ss_pred             HHHhch-------------------------------------------hhhhhhccceeEEEEccCCCCHHHHHHHHHH
Confidence            532110                                           0112233589999999999999999888864


Q ss_pred             ----cC--CccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcccccccccc
Q 006354          469 ----MG--APIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF  542 (649)
Q Consensus       469 ----~~--~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~  542 (649)
                          +|  +++++.||+||++.+++.........+++|+|+||++++|+|.           +..|||+|+|++++.|||
T Consensus       358 ~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~-----------~~~GEi~vrg~~v~~GY~  426 (614)
T PRK08180        358 AEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPV-----------GGKLEVRVKGPNVTPGYW  426 (614)
T ss_pred             HHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEecC-----------CCCcEEEEecCccchhhc
Confidence                33  6899999999998777655444556789999999999999872           346999999999999999


Q ss_pred             CCCccchhhhccCCCcccceeeCcEEEE----ccCCeEEEEecCCCeEEcCCceeee--CChhhhHhccCcccccceEEE
Q 006354          543 NNPGKTSEVYKVDERGMCWFYTGDIGQV----YPDGCLEIIDRKKDIVKLQHGEYIS--LGKIPSTTTVLPLLFHHIRLW  616 (649)
Q Consensus       543 ~~~~~t~~~f~~~~~~~~w~~TGDlg~~----~~dG~l~i~GR~dd~iki~~G~~v~--~~eIE~~l~~~p~V~~~~~V~  616 (649)
                      ++|+.|++.|.  .+  |||+|||+|++    |+||+++|+||+||+||+++|++|+  |.|+|.++.+||.|. +|+|+
T Consensus       427 ~~p~~t~~~~~--~d--gw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~-~a~V~  501 (614)
T PRK08180        427 RAPELTAEAFD--EE--GYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQ-DVVIT  501 (614)
T ss_pred             CChhHhHhhcc--cC--CceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhh-eEEEE
Confidence            99999999986  56  89999999999    4689999999999999988899877  778889999999999 99999


Q ss_pred             ecCCCCcccchh
Q 006354          617 RNGPMKLASSTK  628 (649)
Q Consensus       617 g~~~~~~~~~~~  628 (649)
                      |.+++..+..+.
T Consensus       502 g~~~~~~~a~V~  513 (614)
T PRK08180        502 GHDRDEIGLLVF  513 (614)
T ss_pred             cCCCCceEEEEE
Confidence            999988775554

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3e-62  Score=552.17  Aligned_cols=455  Identities=22%  Similarity=0.326  Sum_probs=352.7

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 006354           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (649)
Q Consensus        79 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (649)
                      +...++.++|+++++++||++|+.+.+           +.      .+.++.+||+||.++++++|++|+++|+++||+|
T Consensus        46 ~~~~~l~~~l~~~a~~~pd~~a~~~~~-----------~~------~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V  108 (624)
T PRK12582         46 PYPRSIPHLLAKWAAEAPDRPWLAQRE-----------PG------HGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPV  108 (624)
T ss_pred             CcccCHHHHHHHHHHHCCCchheeccc-----------CC------CCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            456799999999999999999998631           10      1334579999999999999999999999999999


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCEEEEecCCCCH-----HHHHHHHhhcCceEEEECchh-HHHHHHhhccCCCccEEEEe
Q 006354          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGE-----DALIHSLNETQVTTLICDSKQ-LKKLSAVSSSLKTIKNVIYF  232 (649)
Q Consensus       159 ~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~l~~~~~~~~~~~~ii~~  232 (649)
                      +++++|+++|+++++||+++|++++|++|.++.     +++.+++++++++++|++... .......... ..++ ++.+
T Consensus       109 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~-~i~~  186 (624)
T PRK12582        109 MILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDVT-VVHV  186 (624)
T ss_pred             EEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCce-EEEE
Confidence            999999999999999999999999999999885     899999999999999998642 2222121111 1222 3333


Q ss_pred             cCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCC--CCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhh
Q 006354          233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPV--DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL  310 (649)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~  310 (649)
                      +....           .....+++++.........  ......++++++|+|||||||.||||++||+++++.+......
T Consensus       187 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~  255 (624)
T PRK12582        187 TGPGE-----------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQL  255 (624)
T ss_pred             cCCCc-----------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHh
Confidence            32111           1122445555443221111  1123467899999999999999999999999999887776555


Q ss_pred             CCCCCC---CcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHH
Q 006354          311 IPNPGR---SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV  386 (649)
Q Consensus       311 ~~~~~~---~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l  386 (649)
                      + ....   .+++++++|++|.+++.. ++.++..|+++++.+.......    ...+...++++++|+++++|.+++.+
T Consensus       256 ~-~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~----~~~~~~~i~~~~~t~~~~vP~~~~~l  330 (624)
T PRK12582        256 R-PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGM----FEETIRNLREISPTVYGNVPAGYAML  330 (624)
T ss_pred             c-cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccch----HHHHHHHHHhcCCeEEeccCHHHHHH
Confidence            4 3333   579999999999999866 4567999999988432111100    01122337889999999999999988


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHH
Q 006354          387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN  466 (649)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~  466 (649)
                      .+......                                           ..+..++++||.+++||+++++++.+++.
T Consensus       331 ~~~~~~~~-------------------------------------------~~~~~~~~slr~i~~gGa~l~~~~~~~~~  367 (624)
T PRK12582        331 AEAMEKDD-------------------------------------------ALRRSFFKNLRLMAYGGATLSDDLYERMQ  367 (624)
T ss_pred             HHHHhhCH-------------------------------------------HHHHHHhhheeEEEecCCCCCHHHHHHHH
Confidence            76432110                                           01111235899999999999999999988


Q ss_pred             hhc------CCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcccccccc
Q 006354          467 ICM------GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG  540 (649)
Q Consensus       467 ~~~------~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~g  540 (649)
                      +.+      ++++++.||+||++.+++.......+.+++|+|+||++++|++           .|+.|||+|+|++++.|
T Consensus       368 ~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~-----------~G~~GEl~vrg~~v~~G  436 (624)
T PRK12582        368 ALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP-----------VGDKYEVRVKGPNVTPG  436 (624)
T ss_pred             HHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc-----------CCCceEEEEECCccccc
Confidence            752      3689999999999876654333445568999999999999964           46789999999999999


Q ss_pred             ccCCCccchhhhccCCCcccceeeCcEEEE-c---cCCeEEEEecCCCeEEcCCceeeeCChhh--hHhccCcccccceE
Q 006354          541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQV-Y---PDGCLEIIDRKKDIVKLQHGEYISLGKIP--STTTVLPLLFHHIR  614 (649)
Q Consensus       541 Y~~~~~~t~~~f~~~~~~~~w~~TGDlg~~-~---~dG~l~i~GR~dd~iki~~G~~v~~~eIE--~~l~~~p~V~~~~~  614 (649)
                      ||++|+.|++.|.  .+  |||+|||+|++ |   +||+++|+||+||+||+++|++|+|.+||  .++.+||.|. +|+
T Consensus       437 Y~~~p~~t~~~f~--~d--gw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~-~a~  511 (624)
T PRK12582        437 YHKDPELTAAAFD--EE--GFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIH-DAV  511 (624)
T ss_pred             ccCCccchhhhcC--cc--CCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchh-eEE
Confidence            9999999999996  56  89999999998 4   46999999999999999889999999885  6889999999 999


Q ss_pred             EEecCCCCcccch
Q 006354          615 LWRNGPMKLASST  627 (649)
Q Consensus       615 V~g~~~~~~~~~~  627 (649)
                      |+|.+++..|+.+
T Consensus       512 VvG~~~~~~g~lv  524 (624)
T PRK12582        512 VAGQDRAFIGLLA  524 (624)
T ss_pred             EEcCCCCcEEEEE
Confidence            9999999988774

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=7e-64  Score=662.75  Aligned_cols=491  Identities=19%  Similarity=0.235  Sum_probs=399.9

Q ss_pred             CcccccccccCCCccceehheeeecceeEeeehhccccccccccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHH
Q 006354            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (649)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (649)
                      +|++++|+...+..|..++..++..+    +++  |...   +.++++++..++..++..++   ....+++...+++++
T Consensus      1941 ~y~~~~~~~~~~~~~~~~~~~~l~~~----~~~--~~~~---~~~l~~l~~~~~~~l~~~~~---~~~~~~~~~~~~~~~ 2008 (5163)
T PRK12316       1941 SYDRGHFDAAAIERLDRHLLHLLEQM----AED--AQAA---LGELALLDAGERQRILADWD---RTPEAYPRGPGVHQR 2008 (5163)
T ss_pred             ecChhhCCHHHHHHHHHHHHHHHHHH----HhC--cccc---cccccCCCHHHHHHHHHhcC---CCCCCCCCCCCHHHH
Confidence            79999999999999999999888844    334  6666   88899999888877655323   122234455699999


Q ss_pred             HHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH
Q 006354           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (649)
Q Consensus        88 ~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~  167 (649)
                      |+++++++|+++|+.+.            ++           .+||+||.++++++|++|+++|+++|++|+|+++|+++
T Consensus      2009 ~~~~a~~~p~~~A~~~~------------~~-----------~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~ 2065 (5163)
T PRK12316       2009 IAEQAARAPEAIAVVFG------------DQ-----------HLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFE 2065 (5163)
T ss_pred             HHHHHHhCCCCeEEEcC------------CC-----------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence            99999999999999862            32           59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCC
Q 006354          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (649)
Q Consensus       168 ~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~  247 (649)
                      +++++|||+++|+++||+||.+|.+++.++++++++++++++.+....+..    ...+. .+.++..            
T Consensus      2066 ~~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~~~~-~~~~~~~------------ 2128 (5163)
T PRK12316       2066 LVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPL----PAGVA-RLPLDRD------------ 2128 (5163)
T ss_pred             HHHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccc----ccccc-eEeccch------------
Confidence            999999999999999999999999999999999999999999876544321    01111 1111100            


Q ss_pred             CCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChH
Q 006354          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (649)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (649)
                              ..+...  ....+.....++++|||+|||||||.||||+++|+++.+.+.+....+ .++++|++++++|++
T Consensus      2129 --------~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~ 2197 (5163)
T PRK12316       2129 --------AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-ELSPADCELQFMSFS 2197 (5163)
T ss_pred             --------hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-CCCCcceEEEecCch
Confidence                    000000  111122345789999999999999999999999999999999998888 899999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 006354          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (649)
Q Consensus       328 h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (649)
                      |+.++..++.+|+.|+++++.+... .+     +..+...++++++|++.++|++++.+.+......             
T Consensus      2198 fd~~~~~~~~~L~~G~~~~~~~~~~-~~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------- 2258 (5163)
T PRK12316       2198 FDGAHEQWFHPLLNGARVLIRDDEL-WD-----PEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG------------- 2258 (5163)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCccc-CC-----HHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc-------------
Confidence            9999999999999999997743211 11     1122333999999999999999998876321100             


Q ss_pred             HHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccCcccccccc
Q 006354          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGS  486 (649)
Q Consensus       408 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~  486 (649)
                                                         ..++||.+++|||++++++.+.|.+.+ +..++|.||+||++..+
T Consensus      2259 -----------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 2303 (5163)
T PRK12316       2259 -----------------------------------RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTP 2303 (5163)
T ss_pred             -----------------------------------CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeee
Confidence                                               013799999999999999999888765 67899999999998877


Q ss_pred             cccCCCCC-----CCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC---Cc
Q 006354          487 TFSEWDDP-----SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE---RG  558 (649)
Q Consensus       487 ~~~~~~~~-----~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~---~~  558 (649)
                      +.......     ...++|+|++|++++|+| ++++.   +++|++|||+|+|+++++||+|+|+.|+++|..++   .+
T Consensus      2304 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~ 2379 (5163)
T PRK12316       2304 LLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADLNL---LAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASG 2379 (5163)
T ss_pred             eeeecccccccCCCcCCcccccCCCEEEEEC-CCCCC---CCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCC
Confidence            65433211     125899999999999998 44443   78999999999999999999999999999997542   24


Q ss_pred             ccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCC
Q 006354          559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPM  621 (649)
Q Consensus       559 ~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~  621 (649)
                      .+||||||+|++++||.|+|+||+||+||++ |+||+|+|||++|.+||+|. +|+|++..+.
T Consensus      2380 ~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~-G~rie~~eIE~~l~~~~~v~-~a~v~~~~~~ 2440 (5163)
T PRK12316       2380 ERLYRTGDLARYRADGVVEYLGRIDHQVKIR-GFRIELGEIEARLQAHPAVR-EAVVVAQDGA 2440 (5163)
T ss_pred             CeeEecccEEEEcCCCcEEEecCCCCeEEEc-CccCChHHHHHHHhhCcccc-eEEEEEEecC
Confidence            5899999999999999999999999999996 99999999999999999999 9999987655

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.8e-63  Score=610.38  Aligned_cols=525  Identities=17%  Similarity=0.164  Sum_probs=394.3

Q ss_pred             CcccccccccCCCccceehheeeecceeEeeehhccccccccccCCCCCCCCCCccccccCCCCcccccCCCC-CCCHHH
Q 006354            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG-ASTMAA   86 (649)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~tl~~   86 (649)
                      .||.++|++..+..+..++..++..+    +++  |...   +.++++++..+.+.+... .    ....|+. ..++++
T Consensus       175 ~y~~~lf~~~~i~~l~~~f~~lL~~~----~~~--p~~~---l~~l~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~~  240 (1389)
T TIGR03443       175 YYNSLLFSSDRITIVADQLAQLLSAA----SSN--PDEP---IGKVSLITPSQKSLLPDP-T----KDLDWSGFRGAIHD  240 (1389)
T ss_pred             EEchhcCCHHHHHHHHHHHHHHHHHH----HhC--cCCc---eecccCCCHHHHhhhhcc-c----cccCcCcccCcHHH
Confidence            79999999999999998888877733    233  7777   888888877765543211 1    1112222 368999


Q ss_pred             HHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCH
Q 006354           87 LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV  166 (649)
Q Consensus        87 ~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~  166 (649)
                      +|+++++++|+++|+++.....       +..       ...+.+||+||.++++++|++|++.|+++|++|+|+++|++
T Consensus       241 ~~~~~a~~~pd~~A~~~~~~~~-------~~~-------~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~  306 (1389)
T TIGR03443       241 IFADNAEKHPDRTCVVETPSFL-------DPS-------SKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGV  306 (1389)
T ss_pred             HHHHHHHhCCCCeEEEeccccc-------ccc-------CCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCH
Confidence            9999999999999998632000       000       11246999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh---HHHHHHhhcc----CCCccEEEEecCCCCCc
Q 006354          167 EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---LKKLSAVSSS----LKTIKNVIYFENDGSEK  239 (649)
Q Consensus       167 ~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---~~~l~~~~~~----~~~~~~ii~~~~~~~~~  239 (649)
                      ++++++|||+++|+++||++|.++++++.+++++++++++|++...   ...+......    ...+..+. +.+.....
T Consensus       307 ~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  385 (1389)
T TIGR03443       307 DLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALA-LQDDGSLV  385 (1389)
T ss_pred             HHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEE-eccccccc
Confidence            9999999999999999999999999999999999999999987542   1111111110    01111111 11110000


Q ss_pred             cCCCCCCCCCceEeehHHHHhcCC--CCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCC
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLGK--RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS  317 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  317 (649)
                      ..       ... ....+......  ..........++|+|||+|||||||.||||+++|+++++.+.+....+ .+.++
T Consensus       386 ~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~  456 (1389)
T TIGR03443       386 GG-------SLE-GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-GLSEN  456 (1389)
T ss_pred             cc-------ccc-cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCC
Confidence            00       000 00000000000  001112234678999999999999999999999999999999888888 89999


Q ss_pred             cEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354          318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (649)
Q Consensus       318 d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~  397 (649)
                      |++++++|++|+.++..++.+|+.|+++++.+.....+.     ..+...++++++|+++++|++++.+......     
T Consensus       457 d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~-----~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-----  526 (1389)
T TIGR03443       457 DKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTP-----GRLAEWMAKYGATVTHLTPAMGQLLSAQATT-----  526 (1389)
T ss_pred             CEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCH-----HHHHHHHHHhCCeEEEeCHHHHHHHHhcccc-----
Confidence            999999999999999889999999999998554332221     1233349999999999999999887542100     


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccc
Q 006354          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA  476 (649)
Q Consensus       398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~  476 (649)
                                                                   ..++||.+++||+++++...+.+.... +++++|.
T Consensus       527 ---------------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~  561 (1389)
T TIGR03443       527 ---------------------------------------------PIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNM  561 (1389)
T ss_pred             ---------------------------------------------cCCCccEEEEecccCCHHHHHHHHHhCCCCEEEEC
Confidence                                                         014799999999999999988877654 7899999


Q ss_pred             cCcccccccccccCCCC-----------CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCC
Q 006354          477 YGLTETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP  545 (649)
Q Consensus       477 YG~TE~~~~~~~~~~~~-----------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~  545 (649)
                      ||+||++..++......           ....++|+|+++++++|+|.++..  ..+++|+.|||+|+|+++++||+|+|
T Consensus       562 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~--~~~~~G~~GEL~i~G~~v~~GY~~~p  639 (1389)
T TIGR03443       562 YGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRT--QTCGVGEVGEIYVRAGGLAEGYLGLP  639 (1389)
T ss_pred             ccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCC--CcCCCCCceEEEecccccchhcCCCh
Confidence            99999987766432211           123689999999999999954322  23789999999999999999999999


Q ss_pred             ccchhhhccCC------------------------CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhh
Q 006354          546 GKTSEVYKVDE------------------------RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPS  601 (649)
Q Consensus       546 ~~t~~~f~~~~------------------------~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~  601 (649)
                      +.|+++|..++                        ++.+||+|||+|++++||.|+|+||.||+||+ +|+||+|.|||+
T Consensus       640 ~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~  718 (1389)
T TIGR03443       640 ELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDT  718 (1389)
T ss_pred             hHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHH
Confidence            99999996321                        12489999999999999999999999999998 599999999999


Q ss_pred             HhccCcccccceEEEecCCCCcccchhh
Q 006354          602 TTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       602 ~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                      +|.+||.|. +++|++..+...+..+.+
T Consensus       719 ~l~~~p~V~-~a~v~~~~~~~~~~~lva  745 (1389)
T TIGR03443       719 HLSQHPLVR-ENVTLVRRDKDEEPTLVS  745 (1389)
T ss_pred             HHHhCcchh-eeEEEEeeCCCCCeEEEE
Confidence            999999999 999988766654443333

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=2.3e-63  Score=607.27  Aligned_cols=487  Identities=20%  Similarity=0.232  Sum_probs=394.8

Q ss_pred             CcccccccccCCCccceehheeeecceeEeeehhccccccccccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHH
Q 006354            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (649)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (649)
                      .|++++|++..+..+...+..++..+    +++  |..+   +.++++++..+++.+...++    ...+++. .+++++
T Consensus       398 ~y~~~~f~~~~i~~l~~~~~~ll~~~----~~~--p~~~---i~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~l~~~  463 (1296)
T PRK10252        398 LANPQRYDEATLIAHAERLKALIAQF----AAD--PALL---CGDVDILLPGEYAQLAQVNA----TAVEIPE-TTLSAL  463 (1296)
T ss_pred             EEChhhCCHHHHHHHHHHHHHHHHHH----HhC--CCCC---hhhcCCCCHHHHHHHHHhcC----CCCCCCc-CCHHHH
Confidence            68889999999988888877777733    233  6666   88888888877766433333    2233333 689999


Q ss_pred             HHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH
Q 006354           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (649)
Q Consensus        88 ~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~  167 (649)
                      |+++++++|+++|+.+            +++           .+||+||.++++++|+.|.+.|+++||+|+|+++|+++
T Consensus       464 ~~~~~~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~  520 (1296)
T PRK10252        464 VAQQAAKTPDAPALAD------------ARY-----------QFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVF  520 (1296)
T ss_pred             HHHHHHhCCCCeEEEc------------CCC-----------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence            9999999999999986            332           59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCC
Q 006354          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (649)
Q Consensus       168 ~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~  247 (649)
                      ++++++||+++|++++|++|.++.+++.+++++++++++|++......+...    +.+.                    
T Consensus       521 ~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----~~~~--------------------  576 (1296)
T PRK10252        521 LTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV----PDLT--------------------  576 (1296)
T ss_pred             HHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC----CCce--------------------
Confidence            9999999999999999999999999999999999999999998765443221    1111                    


Q ss_pred             CCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChH
Q 006354          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (649)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (649)
                          ...+.+....  ....+.....++++|||+|||||||.||||+++|+++++.+.+....+ ++.++|++++.+|++
T Consensus       577 ----~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~  649 (1296)
T PRK10252        577 ----SLCYNAPLAP--QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-PLTADDVVLQKTPCS  649 (1296)
T ss_pred             ----eeeccccccc--ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEEeCCcc
Confidence                1111111000  001111233678999999999999999999999999999999999988 999999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 006354          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (649)
Q Consensus       328 h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (649)
                      |+.+++.++.+|+.|+++++.++....+.     ..+...++++++|++.++|+++..+..........           
T Consensus       650 fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~-----------  713 (1296)
T PRK10252        650 FDVSVWEFFWPFIAGAKLVMAEPEAHRDP-----LAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGAR-----------  713 (1296)
T ss_pred             hhhhHHHHHHHHhCCCEEEECChhccCCH-----HHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccccc-----------
Confidence            99999999999999999999654433222     22333489999999999999999887542111000           


Q ss_pred             HHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCccccccccc
Q 006354          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST  487 (649)
Q Consensus       408 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  487 (649)
                                                        ...+++|.+++||+++++++.+.|.+.++++++|.||+||++..++
T Consensus       714 ----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  759 (1296)
T PRK10252        714 ----------------------------------QSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVS  759 (1296)
T ss_pred             ----------------------------------ccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheee
Confidence                                              0013799999999999999999999888999999999999988776


Q ss_pred             ccCCC-------CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC--Cc
Q 006354          488 FSEWD-------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RG  558 (649)
Q Consensus       488 ~~~~~-------~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~~  558 (649)
                      .....       .....++|+|++|++++|+| ++++.   +++|+.|||+|+|+++++||+++|+.|+++|..++  ++
T Consensus       760 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~  835 (1296)
T PRK10252        760 WYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRP---VPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPG  835 (1296)
T ss_pred             eeecccccccccCCCCCCcccccCCCEEEEEC-CCCCC---CCCCCceEEEecccccchhhCCCcccchhhcccCCCCCC
Confidence            54332       22346899999999999998 55543   78999999999999999999999999999997543  24


Q ss_pred             ccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEec
Q 006354          559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRN  618 (649)
Q Consensus       559 ~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~  618 (649)
                      .+||+|||+|++++||+++++||.|++||++ |++|+|.|||++|.+||+|. +|+|++.
T Consensus       836 ~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~-G~ri~~~eIE~~l~~~~~v~-~a~v~~~  893 (1296)
T PRK10252        836 ERMYRTGDVARWLDDGAVEYLGRSDDQLKIR-GQRIELGEIDRAMQALPDVE-QAVTHAC  893 (1296)
T ss_pred             CEEEecCceEEEcCCCcEEEecccCCeEEEe-eEEecHHHHHHHHHhCcccc-ceEEEEE
Confidence            5799999999999999999999999999985 99999999999999999999 9987754

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.1e-63  Score=656.61  Aligned_cols=486  Identities=19%  Similarity=0.259  Sum_probs=402.8

Q ss_pred             CcccccccccCCCccceehheeeecceeEeeehhccccccccccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHH
Q 006354            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (649)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (649)
                      .||+++|++..+..|...+..++..+    ++.  |...   +.++++++..+++.+...++   ....+.+...+++++
T Consensus      2995 ~y~~~~~~~~~i~~l~~~f~~lL~~l----~~~--p~~~---i~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 3062 (5163)
T PRK12316       2995 TYATDLFDARTVERLARHWQNLLRGM----VEN--PQRS---VDELAMLDAEERGQLLEAWN---ATAAEYPLERGVHRL 3062 (5163)
T ss_pred             EECcCCCCHHHHHHHHHHHHHHHHHH----HhC--CCCc---hhhccCCCHHHHHHHHHHhC---CCCcCCCCcCCHHHH
Confidence            79999999999999999999888844    334  6666   88899998888877654333   123344555799999


Q ss_pred             HHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH
Q 006354           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (649)
Q Consensus        88 ~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~  167 (649)
                      |+++++++|+++|+.+.            +.           .+||+||.++++++|++|+++|+++|++|+|+++++++
T Consensus      3063 ~~~~~~~~p~~~Av~~~------------~~-----------~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l~~~~s~~ 3119 (5163)
T PRK12316       3063 FEEQVERTPDAVALAFG------------EQ-----------RLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLE 3119 (5163)
T ss_pred             HHHHHHhCCCCeeEeeC------------Ce-----------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHH
Confidence            99999999999999863            22           59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCC
Q 006354          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (649)
Q Consensus       168 ~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~  247 (649)
                      +++++|||+++|+++||+||.+|.+++.++++++++++++++...  .+    ...... .++.++....          
T Consensus      3120 ~iv~~lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~--~~----~~~~~~-~~~~~~~~~~---------- 3182 (5163)
T PRK12316       3120 MVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL--RL----PLAQGV-QVLDLDRGDE---------- 3182 (5163)
T ss_pred             HHHHHHHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCccc--cC----CccCCc-cEEEeccccc----------
Confidence            999999999999999999999999999999999999999998654  11    111111 1222221100          


Q ss_pred             CCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChH
Q 006354          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (649)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (649)
                                    ......+.....++++|||+|||||||.||||+++|+++.+.+.+....+ +++++|++++++|++
T Consensus      3183 --------------~~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~ 3247 (5163)
T PRK12316       3183 --------------NYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAY-GLGVGDRVLQFTTFS 3247 (5163)
T ss_pred             --------------cccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhh-CCCcccEEEeecCcc
Confidence                          00111123345789999999999999999999999999999999999988 999999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 006354          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (649)
Q Consensus       328 h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (649)
                      |+.++..++.+|+.|+++++.++....+.     ..+...++++++|++..+|+++..+.+....               
T Consensus      3248 fd~~~~~i~~~L~~G~~l~~~~~~~~~~~-----~~l~~~~~~~~v~~~~~~ps~~~~l~~~~~~--------------- 3307 (5163)
T PRK12316       3248 FDVFVEELFWPLMSGARVVLAGPEDWRDP-----ALLVELINSEGVDVLHAYPSMLQAFLEEEDA--------------- 3307 (5163)
T ss_pred             HHHHHHHHHHHHhCCCEEEEcChhhcCCH-----HHHHHHHHHcCCcEEEcCHHHHHHHHhcccc---------------
Confidence            99999999999999999999665443332     1223338889999999999999887653110               


Q ss_pred             HHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCccccccccc
Q 006354          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST  487 (649)
Q Consensus       408 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  487 (649)
                                                        ...+++|.+++|||++++++.++|.  .+++++|.||+||+++.++
T Consensus      3308 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~--~~~~l~n~YG~TE~~~~~~ 3351 (5163)
T PRK12316       3308 ----------------------------------HRCTSLKRIVCGGEALPADLQQQVF--AGLPLYNLYGPTEATITVT 3351 (5163)
T ss_pred             ----------------------------------ccCCcceEEEEccccCCHHHHHHHH--hCCcEeeccCCCccEeeEe
Confidence                                              0114899999999999999999998  4789999999999998877


Q ss_pred             ccCC--CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC--Cccccee
Q 006354          488 FSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMCWFY  563 (649)
Q Consensus       488 ~~~~--~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~~~~w~~  563 (649)
                      ....  ......++|+|++|++++|+| ++++.   +|+|.+|||+|+|+++++||+|+|++|+++|..++  .+.+||+
T Consensus      3352 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---~p~G~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~ 3427 (5163)
T PRK12316       3352 HWQCVEEGKDAVPIGRPIANRACYILD-GSLEP---VPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYR 3427 (5163)
T ss_pred             EEeccCCCCCCCccceecCCCEEEEEC-CCCCC---CCCCCCceEEecccccchhcCCChhhchhhCCCCCCCCCCeeEe
Confidence            6543  223457999999999999999 55543   78999999999999999999999999999998542  3568999


Q ss_pred             eCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354          564 TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK  622 (649)
Q Consensus       564 TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~  622 (649)
                      |||+|++++||.|+|+||+|++||++ |+||+|+|||++|.+||+|. +|+|++.....
T Consensus      3428 TGDl~~~~~dG~l~~~GR~d~qvKi~-G~rIel~eIE~~l~~~~~V~-~a~v~~~~~~~ 3484 (5163)
T PRK12316       3428 TGDLARYRADGVIEYIGRVDHQVKIR-GFRIELGEIEARLLEHPWVR-EAVVLAVDGRQ 3484 (5163)
T ss_pred             cCceEEECCCCCEEEecccCCeEeeC-cEeeChHHHHHHHHhCCCcc-eEEEEEccCCe
Confidence            99999999999999999999999995 99999999999999999999 99999987443

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=6.9e-61  Score=533.90  Aligned_cols=447  Identities=21%  Similarity=0.299  Sum_probs=366.5

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .|+.++|++.++.+|+++|+++.+          ++       .+.++.+||+||.++++++|++|++.|+++||+|+++
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~~----------~~-------~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~   86 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAVR----------LG-------TGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQ   86 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEecC----------CC-------ccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            689999999999999999998632          11       1334579999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh-----HHHHHHhhccCCCccEEEEecCCC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFENDG  236 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~l~~~~~~~~~~~~ii~~~~~~  236 (649)
                      ++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++++.     .+.+.++....+.++.++.++...
T Consensus        87 ~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (547)
T PRK13295         87 LPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG  166 (547)
T ss_pred             CCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC
Confidence            999999999999999999999999999999999999999999999998754     233444444556666666654321


Q ss_pred             CCccCCCCCCCCCceEeehHHHHhcCC-------CCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHh
Q 006354          237 SEKDSGVSGGISNWTVSSFSEVEKLGK-------RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT  309 (649)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~  309 (649)
                      .               .++.++.....       ..........++++++|+|||||||.||||+++|++++..+.....
T Consensus       167 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~  231 (547)
T PRK13295        167 A---------------DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAE  231 (547)
T ss_pred             c---------------cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHH
Confidence            1               12333222110       0011123346789999999999999999999999999999888887


Q ss_pred             hCCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHH
Q 006354          310 LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR  385 (649)
Q Consensus       310 ~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~  385 (649)
                      .+ .+.++|++++.+|++|..++.. ++.++..|+++++.   ++..+.+.           ++++++|++.++|.++..
T Consensus       232 ~~-~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~p~~~~~  299 (547)
T PRK13295        232 RL-GLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAEL-----------IRTEGVTFTMASTPFLTD  299 (547)
T ss_pred             Hh-CCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHH-----------HHHcCCcEEEecHHHHHH
Confidence            77 8899999999999999998765 77889999999884   33444444           999999999999999988


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHH
Q 006354          386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI  465 (649)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~  465 (649)
                      +.......                                               ....++||.+++||+++++++.+++
T Consensus       300 l~~~~~~~-----------------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~  332 (547)
T PRK13295        300 LTRAVKES-----------------------------------------------GRPVSSLRTFLCAGAPIPGALVERA  332 (547)
T ss_pred             HHhccccc-----------------------------------------------CCCcccceEEEEecCCCCHHHHHHH
Confidence            87532110                                               0012489999999999999999999


Q ss_pred             HhhcCCccccccCcccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccC
Q 006354          466 NICMGAPIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN  543 (649)
Q Consensus       466 ~~~~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~  543 (649)
                      .+.+++++++.||+||++.+++.....  .....++|+|+++++++|+| +++..   ++.|+.|||+|+|++++.||++
T Consensus       333 ~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gY~~  408 (547)
T PRK13295        333 RAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAP---LPAGQIGRLQVRGCSNFGGYLK  408 (547)
T ss_pred             HHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCC---CCCCCCCeEEEEcCcccccccC
Confidence            988899999999999998766544332  22347899999999999999 44443   6789999999999999999999


Q ss_pred             CCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCc
Q 006354          544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKL  623 (649)
Q Consensus       544 ~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~  623 (649)
                      +|+.|+..    .+  |||+|||+|++++||++++.||.||+||+ +|++|+|.+||++|.+||.|. +++|++.++...
T Consensus       409 ~~~~t~~~----~~--g~~~TGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~-~~~v~~~~~~~~  480 (547)
T PRK13295        409 RPQLNGTD----AD--GWFDTGDLARIDADGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIA-QVAIVAYPDERL  480 (547)
T ss_pred             CccccccC----CC--CCeecceEEEEcCCceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCee-eEEEEeeecCCC
Confidence            99998765    34  79999999999999999999999999997 599999999999999999999 999999988877


Q ss_pred             ccchhhhh
Q 006354          624 ASSTKIFQ  631 (649)
Q Consensus       624 ~~~~~~~~  631 (649)
                      ++.+.++.
T Consensus       481 g~~~~~~v  488 (547)
T PRK13295        481 GERACAFV  488 (547)
T ss_pred             CcEEEEEE
Confidence            76554443

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.5e-63  Score=482.18  Aligned_cols=449  Identities=20%  Similarity=0.269  Sum_probs=387.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 006354           80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA  159 (649)
Q Consensus        80 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~  159 (649)
                      ...|+.+++.++|+++||++|++.             |.          +.+||+||.+++.++|.+|+++|+++||+|.
T Consensus        26 ~d~~l~d~L~~~A~~~pdriAv~d-------------~~----------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vl   82 (542)
T COG1021          26 QDRTLTDILTDHAARYPDRIAVID-------------GE----------RRLSYAELDQRADRLAAGLRRLGIKPGDTVL   82 (542)
T ss_pred             cCCcHHHHHHHHHhhcCCceEEec-------------Cc----------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            347999999999999999999984             43          3699999999999999999999999999999


Q ss_pred             EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECch-----hHHHHHHhhccCCCccEEEEecC
Q 006354          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK-----QLKKLSAVSSSLKTIKNVIYFEN  234 (649)
Q Consensus       160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-----~~~~l~~~~~~~~~~~~ii~~~~  234 (649)
                      +-++|..+++++++|++++|+.+|.--|.+...+|.+..+.++++.+|.+..     ..+...+.....+.++++++.++
T Consensus        83 vQLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge  162 (542)
T COG1021          83 VQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGE  162 (542)
T ss_pred             EECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccC
Confidence            9999999999999999999999999999999999999999999999999764     34556667778889999998754


Q ss_pred             CCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC
Q 006354          235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (649)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~  314 (649)
                      .+..              ...+..+........+..+.+++++|+...+.||||.||-+..||.....++.+-.+.+ ++
T Consensus       163 ~~~~--------------~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-~~  227 (542)
T COG1021         163 AEHP--------------SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-GF  227 (542)
T ss_pred             CCCc--------------chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-Cc
Confidence            3211              11122222222233334667888999999999999999999999999999999999999 99


Q ss_pred             CCCcEEEEccChHHHHHHHH--HHHHHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          315 GRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       315 ~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                      +.++++++.+|..|-+.+..  .+..++.|+++++   .+|...+..           |+++++|+...+|.+...|++.
T Consensus       228 ~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~l-----------Ierh~Vt~tALVPpla~LWlqa  296 (542)
T COG1021         228 DQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPL-----------IERHGVTVTALVPPLASLWLQA  296 (542)
T ss_pred             CccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHH-----------HHHhccceEEeccHHHHHHHHh
Confidence            99999999999999988876  6788999999999   666666666           9999999999999999988875


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      ...                                               +..+++|||.+-+||+.+++++.+++...+
T Consensus       297 ~e~-----------------------------------------------~~~~LsSLrllQVGGarl~~~~Arrv~~~l  329 (542)
T COG1021         297 AEW-----------------------------------------------ERADLSSLRLLQVGGARLSATLARRVPAVL  329 (542)
T ss_pred             hhc-----------------------------------------------ccCCchheeEEeecCcccCHHHHhhchhhh
Confidence            432                                               122336999999999999999999999999


Q ss_pred             CCccccccCcccccccccccCCCCCC---CCccCCCc-ccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCC
Q 006354          470 GAPIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP  545 (649)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~~~~~---~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~  545 (649)
                      ||.+-+.+||.|.-+  .+...++..   ..+-|+|+ |.=+++|+| ++++.   +++|+.|+|..+||...+|||+.|
T Consensus       330 gC~LQQVFGMAEGLv--nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~p---v~pGE~G~LltRGPYTirGYyrap  403 (542)
T COG1021         330 GCQLQQVFGMAEGLV--NYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNP---VAPGEVGELLTRGPYTIRGYYRAP  403 (542)
T ss_pred             CchHHHHhhhhhhhh--cccccCCchHheeecCCCcCCCcceeEEec-CCCCC---CCCCCcceeeecCCeeeeeeccCc
Confidence            999999999999543  333333332   27889997 788999999 66655   789999999999999999999999


Q ss_pred             ccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCccc
Q 006354          546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLAS  625 (649)
Q Consensus       546 ~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~  625 (649)
                      +.++.+|+  .+  |+|+|||+.++|+||+|.+.||.||||+ |+||+|..+|||+.|..||.|. +|++++.+|..+|+
T Consensus       404 ~HNa~aF~--a~--GFYrsGD~V~~~~dGyl~V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~-~AAlVampDelLGE  477 (542)
T COG1021         404 EHNARAFD--AD--GFYRSGDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVH-DAALVAMPDELLGE  477 (542)
T ss_pred             hhhhhccC--cC--CceecCceeEecCCceEEEEeeehhhhc-cccchhhHHHHHHHHhhCchhh-hhhhhcCchhhcCc
Confidence            99999998  77  9999999999999999999999999999 8999999999999999999999 99999999999999


Q ss_pred             chhhhhhhhhh
Q 006354          626 STKIFQSCVTK  636 (649)
Q Consensus       626 ~~~~~~~~~~~  636 (649)
                      ...+|...+..
T Consensus       478 ksCAfiv~~~~  488 (542)
T COG1021         478 KSCAFIVVKEP  488 (542)
T ss_pred             ceeEEEEecCC
Confidence            88887666544

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-61  Score=540.08  Aligned_cols=451  Identities=21%  Similarity=0.257  Sum_probs=368.6

Q ss_pred             CCCHHHHHHHHHH-hCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 006354           81 ASTMAALFEQSCK-SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA  159 (649)
Q Consensus        81 ~~tl~~~~~~~a~-~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~  159 (649)
                      .+.++++++++++ .+|+++|+.+.+           ..        ..+.+||+||.++++++|++|.++|+++||+|+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~a~~~~~-----------~~--------~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~  102 (570)
T PRK04319         42 VNIAYEAIDRHADGGRKDKVALRYLD-----------AS--------RKEKYTYKELKELSNKFANVLKELGVEKGDRVF  102 (570)
T ss_pred             eeHHHHHHHHhhccCCCCceEEEEEC-----------CC--------CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            3556789998887 479999998742           11        114699999999999999999999999999999


Q ss_pred             EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCc
Q 006354          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK  239 (649)
Q Consensus       160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~  239 (649)
                      |+++|++++++++|||+++|++++|+++.++++++.+++++++++++|++.........  ...+.++.++.+++.... 
T Consensus       103 i~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-  179 (570)
T PRK04319        103 IFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVEE-  179 (570)
T ss_pred             EECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcCC-
Confidence            99999999999999999999999999999999999999999999999999876554332  234556666665533210 


Q ss_pred             cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  319 (649)
                               .....++.++...... ........++++++|+|||||||.||||+++|+++++.+......+ .+.++|+
T Consensus       180 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~~d~  248 (570)
T PRK04319        180 ---------GPGTLDFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-DLHEDDV  248 (570)
T ss_pred             ---------CcCccCHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-CCCCCce
Confidence                     1123455655543322 1223345678999999999999999999999999999888887777 8889999


Q ss_pred             EEEccChHHHHHHHH-HHHHHHhCceEEeC----CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHH
Q 006354          320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  394 (649)
                      +++..|++|..+... ++.++..|+++++.    ++..+.+.           ++++++|+++++|.+++.+........
T Consensus       249 ~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~  317 (570)
T PRK04319        249 YWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRI-----------LEDYKVTVWYTAPTAIRMLMGAGDDLV  317 (570)
T ss_pred             EEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHH-----------HHHcCCeEEEeCHHHHHHHHhcCCccc
Confidence            999999999988654 77899999999883    34444444           999999999999999998865311000


Q ss_pred             HhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccc
Q 006354          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG  474 (649)
Q Consensus       395 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~  474 (649)
                                                                   +....++||.+++||+++++++.+++++.++.+++
T Consensus       318 ---------------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~  352 (570)
T PRK04319        318 ---------------------------------------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIH  352 (570)
T ss_pred             ---------------------------------------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeE
Confidence                                                         00012489999999999999999999998999999


Q ss_pred             cccCcccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcc--ccccccccCCCccchhh
Q 006354          475 QAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYFNNPGKTSEV  551 (649)
Q Consensus       475 ~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY~~~~~~t~~~  551 (649)
                      +.||+||++..++..... ....+++|+|+|+++++|+| +++..   +++|+.|||+|+|  ++++.||+++++.|++.
T Consensus       353 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~---~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~  428 (570)
T PRK04319        353 DNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVD-DQGNE---LPPNRMGNLAIKKGWPSMMRGIWNNPEKYESY  428 (570)
T ss_pred             eceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEEC-CCCCC---CCCCCceEEEEcCCCChHHhHhcCCHHHhhhh
Confidence            999999998765543332 33568999999999999999 44443   5789999999987  89999999999999999


Q ss_pred             hccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhh
Q 006354          552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQ  631 (649)
Q Consensus       552 f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~  631 (649)
                      |   .+  |||+|||+|++++||+++++||.||+||+ +|++|+|.|||++|.+||.|. +++|+|.+++..++.+.++.
T Consensus       429 ~---~~--gw~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~V~-~~~v~g~~~~~~g~~~~a~v  501 (570)
T PRK04319        429 F---AG--DWYVSGDSAYMDEDGYFWFQGRVDDVIKT-SGERVGPFEVESKLMEHPAVA-EAGVIGKPDPVRGEIIKAFV  501 (570)
T ss_pred             h---cC--CceEeCcEEEECCCeeEEEEecCCCEEEE-CCEEECHHHHHHHHhhCCCee-ecceecccCcCCceEEEEEE
Confidence            8   45  89999999999999999999999999998 599999999999999999999 99999999888776654443

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.3e-61  Score=535.29  Aligned_cols=462  Identities=23%  Similarity=0.291  Sum_probs=373.1

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHC-CCCCCCEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAAI  160 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~-Gv~~gd~V~i  160 (649)
                      .|+.++|.++++++|+++|+.+            +++           .+||+||.+++.++|++|.+. |+++||+|+|
T Consensus        10 ~tl~~~l~~~a~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i   66 (546)
T PRK08314         10 TSLFHNLEVSARRYPDKTAIVF------------YGR-----------AISYRELLEEAERLAGYLQQECGVRKGDRVLL   66 (546)
T ss_pred             CCHHHHHHHHHHHcCCCcceee------------cCc-----------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEE
Confidence            6899999999999999999986            333           699999999999999999999 9999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCC--C
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS--E  238 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~--~  238 (649)
                      +++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++.+....+....... .++.++.......  .
T Consensus        67 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  145 (546)
T PRK08314         67 YMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPA  145 (546)
T ss_pred             ECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhccc
Confidence            999999999999999999999999999999999999999999999999998877776554333 2344443221100  0


Q ss_pred             -ccCCCCC---------CCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHH
Q 006354          239 -KDSGVSG---------GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK  308 (649)
Q Consensus       239 -~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~  308 (649)
                       .......         ......+..+++......  ........++++|+|+|||||||.||||++||+++++.+....
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~  223 (546)
T PRK08314        146 EPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSV  223 (546)
T ss_pred             ccccCcccccccccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHH
Confidence             0000000         001123345665554322  1223445778999999999999999999999999999998887


Q ss_pred             hhCCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHH
Q 006354          309 TLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR  387 (649)
Q Consensus       309 ~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~  387 (649)
                      ..+ .+..+|++++.+|++|.+++.. ++.++..|+++++.+...        ...+...++++++|++.++|.++..+.
T Consensus       224 ~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~--------~~~~~~~i~~~~~t~~~~~p~~~~~ll  294 (546)
T PRK08314        224 LWS-NSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWD--------REAAARLIERYRVTHWTNIPTMVVDFL  294 (546)
T ss_pred             Hhh-CCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCC--------HHHHHHHHHHhcCceecccHHHHHHHH
Confidence            777 8899999999999999999865 668899999999954321        111223389999999999999998876


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHh
Q 006354          388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI  467 (649)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~  467 (649)
                      .....                                               +....+++|.+++||+++++++.+++.+
T Consensus       295 ~~~~~-----------------------------------------------~~~~~~~l~~~~~gG~~~~~~~~~~~~~  327 (546)
T PRK08314        295 ASPGL-----------------------------------------------AERDLSSLRYIGGGGAAMPEAVAERLKE  327 (546)
T ss_pred             hCCCc-----------------------------------------------cccCchhhheeeeccccCCHHHHHHHHH
Confidence            42100                                               0001137999999999999999999999


Q ss_pred             hcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCcc
Q 006354          468 CMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (649)
Q Consensus       468 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~  547 (649)
                      .++.++++.||+||++.............+++|.|++|++++|+|++++..   ++.|..|||+|+|++++.||+++++.
T Consensus       328 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~---~~~g~~Gel~v~g~~~~~gY~~~~~~  404 (546)
T PRK08314        328 LTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEE---LPPGEVGEIVVHGPQVFKGYWNRPEA  404 (546)
T ss_pred             HcCCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCCCcC---CCCCCceEEEEECCchhccccCChhH
Confidence            889999999999999877666554444568999999999999999666654   57889999999999999999999999


Q ss_pred             chhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       548 t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      |++.|.. .++.+||+|||+|+++++|++++.||.||+||++ |++|+|.|||++|.++|+|. +++|++.++...++.+
T Consensus       405 t~~~f~~-~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~-G~~v~~~eIE~~i~~~~~v~-~~~v~~~~~~~~~~~~  481 (546)
T PRK08314        405 TAEAFIE-IDGKRFFRTGDLGRMDEEGYFFITDRLKRMINAS-GFKVWPAEVENLLYKHPAIQ-EACVIATPDPRRGETV  481 (546)
T ss_pred             hhhhhhh-cCCCceEecCCEEEEcCCCcEEEEecchhhEEeC-CEEECHHHHHHHHHhCcchh-eEEEEeCCCcccCcee
Confidence            9998852 1334799999999999999999999999999985 99999999999999999999 9999999888766554


Q ss_pred             hhhh
Q 006354          628 KIFQ  631 (649)
Q Consensus       628 ~~~~  631 (649)
                      .++.
T Consensus       482 ~a~v  485 (546)
T PRK08314        482 KAVV  485 (546)
T ss_pred             EEEE
Confidence            4443

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.7e-61  Score=532.90  Aligned_cols=440  Identities=18%  Similarity=0.193  Sum_probs=361.0

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .++.++|.++++++|+++|+..            +++           .+||+||.++++++|++|+++|+++|++|+++
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~   99 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLID------------ELG-----------TLTWRELDERSDALAAALQALPIGEPRVVGIM   99 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEe------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            5899999999999999999985            222           59999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+.......+....++...+..     
T Consensus       100 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  174 (537)
T PRK13382        100 CRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED-----  174 (537)
T ss_pred             ecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc-----
Confidence            999999999999999999999999999999999999999999999999887776665443334334444332211     


Q ss_pred             CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 006354          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  321 (649)
                               ....++++.......   .....+++.++++|||||||.||||+++|++++.........+ .+..+++++
T Consensus       175 ---------~~~~~~~~~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l  241 (537)
T PRK13382        175 ---------HDLTVEVLIAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-PWRAEEPTV  241 (537)
T ss_pred             ---------ccccHHHHhhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-CCCCCCeEE
Confidence                     012344443322111   1223468899999999999999999999999988888777777 788899999


Q ss_pred             EccChHHHHHHHHHHHHHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhc
Q 006354          322 AYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (649)
Q Consensus       322 ~~~pl~h~~~~~~~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~  398 (649)
                      ..+|++|.+++...+.++..|+++++   +++..+.+.           ++++++|++.++|+++..+.+......    
T Consensus       242 ~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~----  306 (537)
T PRK13382        242 IVAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDL-----------IDRHRATGLAVVPVMFDRIMDLPAEVR----  306 (537)
T ss_pred             EecChHhhhHHHHHHHHHhcCcEEEECCCcCHHHHHHH-----------HHHhCCEEEEehHHHHHHHHcCCchhc----
Confidence            99999999999878889999999988   444445444           999999999999999998865321100    


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccC
Q 006354          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (649)
Q Consensus       399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (649)
                                                               ....++++|.+++||+++++++.+.|.+.++.++++.||
T Consensus       307 -----------------------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG  345 (537)
T PRK13382        307 -----------------------------------------NRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYN  345 (537)
T ss_pred             -----------------------------------------ccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEeccc
Confidence                                                     001113799999999999999999999988999999999


Q ss_pred             cccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCC
Q 006354          479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER  557 (649)
Q Consensus       479 ~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~  557 (649)
                      +||++.+++..... ....+++|+|++|++++|+| ++++.   ++.|+.|||+|+|++++.||+  ++.+.. |   .+
T Consensus       346 ~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~---~~  415 (537)
T PRK13382        346 ATEAGMIATATPADLRAAPDTAGRPAEGTEIRILD-QDFRE---VPTGEVGTIFVRNDTQFDGYT--SGSTKD-F---HD  415 (537)
T ss_pred             ccccCcceecChhHhccCCCCccccCcCcEEEEEC-CCCCC---CCCCCeeEEEEEcCCcccCcc--ccchhh-c---cC
Confidence            99998776644322 23458999999999999999 45543   678999999999999999998  555543 4   45


Q ss_pred             cccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhh
Q 006354          558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQS  632 (649)
Q Consensus       558 ~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~  632 (649)
                        |||+|||++++++||+++|.||+||+||+ +|++|+|.+||++|.+||+|. +++|++.+++..++...++..
T Consensus       416 --g~~~TGDl~~~~~~g~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~-~~~v~~~~~~~~g~~~~a~vv  486 (537)
T PRK13382        416 --GFMASGDVGYLDENGRLFVVGRDDEMIVS-GGENVYPIEVEKTLATHPDVA-EAAVIGVDDEQYGQRLAAFVV  486 (537)
T ss_pred             --CCEeeCceEEEeCCCcEEEeccccceeEE-CCEEECHHHHHHHHHhCCCEe-eEEEEccCccccCCEEEEEEE
Confidence              89999999999999999999999999997 599999999999999999999 999999998877765554443

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.7e-61  Score=543.05  Aligned_cols=450  Identities=19%  Similarity=0.217  Sum_probs=346.5

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 006354           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (649)
Q Consensus        79 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (649)
                      +...|+.++|+++++++|+++|+.+.+..        ++.      .+.++.+||+||.++++++|++|++. +++||+|
T Consensus        18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~--------~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V   82 (631)
T PRK07769         18 PPNTNLVRHVERWAKVRGDKLAYRFLDFS--------TER------DGVARDLTWSQFGARNRAVGARLQQV-TKPGDRV   82 (631)
T ss_pred             cccCCHHHHHHHHHHhCCCCeEEEEeccC--------CCC------CCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEE
Confidence            34468999999999999999999864210        000      12345799999999999999999987 8999999


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCEEEEe-cCCCC--HHHHHHHHhhcCceEEEECchhHHHHHHhhccCCC--ccEEEEec
Q 006354          159 AILAETCVEWFIAFQGCFRQSITVVTI-YSSLG--EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT--IKNVIYFE  233 (649)
Q Consensus       159 ~i~~~~~~~~vva~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~--~~~ii~~~  233 (649)
                      +|+++|++++++++|||+++|++++|+ ++..+  .+++.+++++++++++|++.+..+.+.+.....+.  ...++.++
T Consensus        83 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (631)
T PRK07769         83 AILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD  162 (631)
T ss_pred             EEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc
Confidence            999999999999999999999999999 55554  68999999999999999998876665544332221  12233222


Q ss_pred             CCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCC
Q 006354          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN  313 (649)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~  313 (649)
                      ....                       .. ..........++++++|+|||||||.||||++||+++.+.+......+ .
T Consensus       163 ~~~~-----------------------~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~  217 (631)
T PRK07769        163 AVPD-----------------------EV-GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-E  217 (631)
T ss_pred             cccc-----------------------cc-ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-C
Confidence            1000                       00 000111234678999999999999999999999999999888887777 8


Q ss_pred             CCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecc---eEEEechHHHHHHHHHH
Q 006354          314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP---TLMAAVPAIFDRVREGV  390 (649)
Q Consensus       314 ~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~---t~l~~~P~~l~~l~~~~  390 (649)
                      +..+|++++++|++|++++...+.+++.|+++++.++..+...    +..+...+.++++   +++..+|.++..+....
T Consensus       218 ~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~  293 (631)
T PRK07769        218 GQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRR----PGRWIRELARKPGGTGGTFSAAPNFAFEHAAAR  293 (631)
T ss_pred             CCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhC----HHHHHHHHHhhccccCceEeeCCchHHHHHHhh
Confidence            8899999999999999999887888889999988654322111    1112223666665   78999999887665320


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-
Q 006354          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-  469 (649)
Q Consensus       391 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-  469 (649)
                      .  .....                                        ......++||.+++||+++++++.+.|.+.+ 
T Consensus       294 ~--~~~~~----------------------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~  331 (631)
T PRK07769        294 G--LPKDG----------------------------------------EPPLDLSNVKGLLNGSEPVSPASMRKFNEAFA  331 (631)
T ss_pred             c--cchhc----------------------------------------ccCcchhheeeEEeccCCCCHHHHHHHHHHHh
Confidence            0  00000                                        0001124899999999999999999998876 


Q ss_pred             --C---CccccccCcccccccccccCCCCC---------------------------CCCccCCCcccceEEEEecCCCC
Q 006354          470 --G---APIGQAYGLTETCAGSTFSEWDDP---------------------------SVGRVGPPVPCCYIKLVSWDEGG  517 (649)
Q Consensus       470 --~---~~l~~~YG~TE~~~~~~~~~~~~~---------------------------~~~~vG~p~p~~~v~i~d~~~~~  517 (649)
                        |   ..+++.||+||++.+++..+....                           ..+++|+|+++++++|+|.+++.
T Consensus       332 ~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~  411 (631)
T PRK07769        332 PYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETAS  411 (631)
T ss_pred             hcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCc
Confidence              3   359999999998876654432110                           12579999999999999966654


Q ss_pred             cccCCCCCCccEEEEccccccccccCCCccchhhhccC-------------CCcccceeeCcEEEEccCCeEEEEecCCC
Q 006354          518 YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD-------------ERGMCWFYTGDIGQVYPDGCLEIIDRKKD  584 (649)
Q Consensus       518 ~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~-------------~~~~~w~~TGDlg~~~~dG~l~i~GR~dd  584 (649)
                      .   ++.|+.|||+|+|++++.|||++++.|++.|...             .++.|||+|||+|+++ ||+|+|+||+||
T Consensus       412 ~---~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d  487 (631)
T PRK07769        412 E---LPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKD  487 (631)
T ss_pred             C---CCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEccccc
Confidence            4   6889999999999999999999999999999521             0123899999999995 999999999999


Q ss_pred             eEEcCCceeeeCChhhhHhcc-Ccccccc--eEEEecCC
Q 006354          585 IVKLQHGEYISLGKIPSTTTV-LPLLFHH--IRLWRNGP  620 (649)
Q Consensus       585 ~iki~~G~~v~~~eIE~~l~~-~p~V~~~--~~V~g~~~  620 (649)
                      +||+ +|++|+|.|||++|.+ ||.|. +  ++|++.++
T Consensus       488 ~Ik~-~G~~V~p~eIE~~l~~~~p~v~-~~~~av~~v~d  524 (631)
T PRK07769        488 LVII-DGRNHYPQDLEYTAQEATKALR-TGYVAAFSVPA  524 (631)
T ss_pred             EEEE-CCeeeCHHHHHHHHHhcccccc-CCcEEEEEecc
Confidence            9998 5999999999999986 89999 8  99999988

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.9e-61  Score=541.54  Aligned_cols=473  Identities=16%  Similarity=0.176  Sum_probs=361.3

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      +..+++|+++++.+|+++|+++..          +.       .+..+.+||+||.++++++|++|+++|+++||+|+++
T Consensus        53 n~~~~~l~~~~~~~p~~~A~~~~~----------~~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~  115 (629)
T PRK10524         53 NLCHNAVDRHLAKRPEQLALIAVS----------TE-------TDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIY  115 (629)
T ss_pred             eHHHHHHHHhhccCCCCeEEEEEc----------CC-------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            446889999999999999998742          11       1223579999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh---------HHHHHHhhccC-CCccEEEE
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSL-KTIKNVIY  231 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~-~~~~~ii~  231 (649)
                      ++|++++++++|||+++|++++|++|.++++++.+++++++++++|+++..         .+.+.++.... +....++.
T Consensus       116 ~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  195 (629)
T PRK10524        116 MPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLL  195 (629)
T ss_pred             CCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEE
Confidence            999999999999999999999999999999999999999999999997642         23333333222 23455665


Q ss_pred             ecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHH-HHhh
Q 006354          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTL  310 (649)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~-~~~~  310 (649)
                      ++......    ...  ......+.++.........+.....++++++|+|||||||.||||+++|++++..... ....
T Consensus       196 ~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~  269 (629)
T PRK10524        196 VDRGLAPM----ARV--AGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTI  269 (629)
T ss_pred             EeCCCCCc----Ccc--cCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHh
Confidence            54321100    000  0112345555443222222223346789999999999999999999999998655444 3444


Q ss_pred             CCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       311 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                      + .+.++|++++.+|++|+.+... ++.+++.|+++++.+.......    ...++..++++++|+++++|++++.+.+.
T Consensus       270 ~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  344 (629)
T PRK10524        270 F-GGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPD----AGIWWRIVEKYKVNRMFSAPTAIRVLKKQ  344 (629)
T ss_pred             c-CCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCC----hHHHHHHHHHcCceEEEeCHHHHHHHHhc
Confidence            5 7888999999999999888654 6788999999988432211111    12233449999999999999999887653


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      ....                                             .+....++||.+++||+++++++.+++.+.+
T Consensus       345 ~~~~---------------------------------------------~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~  379 (629)
T PRK10524        345 DPAL---------------------------------------------LRKHDLSSLRALFLAGEPLDEPTASWISEAL  379 (629)
T ss_pred             Cccc---------------------------------------------ccccChhheeEEEEeCCCCCHHHHHHHHHhc
Confidence            1100                                             0011124899999999999999999999989


Q ss_pred             CCccccccCcccccccc-cccCC---CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccc---ccccccc
Q 006354          470 GAPIGQAYGLTETCAGS-TFSEW---DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYF  542 (649)
Q Consensus       470 ~~~l~~~YG~TE~~~~~-~~~~~---~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~v~~gY~  542 (649)
                      ++++++.||+||++... +....   ...+.+++|+|+||++++|+|++++..   +++|+.|||+|+||   +++.|||
T Consensus       380 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~---~~~g~~Gel~i~gp~~~~~~~~~~  456 (629)
T PRK10524        380 GVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEP---CGPNEKGVLVIEGPLPPGCMQTVW  456 (629)
T ss_pred             CCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCC---CCCCCcEEEEEcCCCChhhcCCcc
Confidence            99999999999997433 22211   123458899999999999999536654   78899999999998   6889999


Q ss_pred             CCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354          543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK  622 (649)
Q Consensus       543 ~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~  622 (649)
                      ++++.+.+.+.... +.+||+|||+|++|+||+++|+||.||+||++ |++|+|.|||++|.+||+|. +|+|+|.+++.
T Consensus       457 ~~~~~~~~~~~~~~-~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~-G~ri~p~eIE~~l~~~p~V~-e~~vvg~~d~~  533 (629)
T PRK10524        457 GDDDRFVKTYWSLF-GRQVYSTFDWGIRDADGYYFILGRTDDVINVA-GHRLGTREIEESISSHPAVA-EVAVVGVKDAL  533 (629)
T ss_pred             CChHHHHHhhhccC-CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeC-CEEeCHHHHHHHHHhCCCcc-eEEEEccccCC
Confidence            99988777653211 23799999999999999999999999999985 99999999999999999999 99999999988


Q ss_pred             cccchhhhhhh
Q 006354          623 LASSTKIFQSC  633 (649)
Q Consensus       623 ~~~~~~~~~~~  633 (649)
                      .|+.+.++..+
T Consensus       534 ~g~~~~~~vv~  544 (629)
T PRK10524        534 KGQVAVAFVVP  544 (629)
T ss_pred             CCeEEEEEEEE
Confidence            77666555443

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=5.9e-61  Score=535.39  Aligned_cols=456  Identities=21%  Similarity=0.250  Sum_probs=348.4

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .++.++|++.++++|+++|+.+.+           +..  ......++.+||+||.++++++|++|.+.|+++||+|+++
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~~-----------~~~--~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~   72 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVPG-----------GRG--ADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLM   72 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEecc-----------CCC--CccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            578899999999999999998631           110  0001223469999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECch--hHHHHHHhhccCCCccEEEEecCCCCCc
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK--QLKKLSAVSSSLKTIKNVIYFENDGSEK  239 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~l~~~~~~~~~~~~ii~~~~~~~~~  239 (649)
                      ++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++.+  ....+...  .....+.++.++...   
T Consensus        73 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~---  147 (552)
T PRK09274         73 VTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRL---  147 (552)
T ss_pred             eCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheecccccc---
Confidence            99999999999999999999999999999999999999999999999752  22222111  112233333332210   


Q ss_pred             cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  319 (649)
                               ......++++...............++++++|+|||||||.||||++||+++.+.+......+ ++.++|+
T Consensus       148 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~  217 (552)
T PRK09274        148 ---------LWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-GIEPGEI  217 (552)
T ss_pred             ---------ccCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-CCCCCce
Confidence                     001123444432221122223345678999999999999999999999999999998888887 8899999


Q ss_pred             EEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcc
Q 006354          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~  399 (649)
                      .++..|++|.++       +..|+++++....... .....+..++..++++++|+++++|+++..+.+.....      
T Consensus       218 ~~~~~pl~~~~~-------~~~g~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------  283 (552)
T PRK09274        218 DLPTFPLFALFG-------PALGMTSVIPDMDPTR-PATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN------  283 (552)
T ss_pred             eeeccCHHHhhh-------hhhCCeEEecCccccc-ccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc------
Confidence            999999987544       3568887763211000 00011233444599999999999999999987643211      


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc--CCcccccc
Q 006354          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM--GAPIGQAY  477 (649)
Q Consensus       400 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~--~~~l~~~Y  477 (649)
                                                               ....++||.+++||+++++++.+.+++.+  |+++++.|
T Consensus       284 -----------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~Y  322 (552)
T PRK09274        284 -----------------------------------------GIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPY  322 (552)
T ss_pred             -----------------------------------------CCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccc
Confidence                                                     01124899999999999999999999988  47999999


Q ss_pred             CcccccccccccCCC----------CCCCCccCCCcccceEEEEecCCCC-----cccCCCCCCccEEEEcccccccccc
Q 006354          478 GLTETCAGSTFSEWD----------DPSVGRVGPPVPCCYIKLVSWDEGG-----YKTSDKPMPRGEIVVGGFNVTAGYF  542 (649)
Q Consensus       478 G~TE~~~~~~~~~~~----------~~~~~~vG~p~p~~~v~i~d~~~~~-----~~~~~~~g~~GEl~v~g~~v~~gY~  542 (649)
                      |+||++.+++.....          .....++|+|+|+++++|+|+++..     ....++.|+.|||+|+|++++.|||
T Consensus       323 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~  402 (552)
T PRK09274        323 GATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYY  402 (552)
T ss_pred             cccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCccccccc
Confidence            999998765543221          1122479999999999999953221     1123788999999999999999999


Q ss_pred             CCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354          543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK  622 (649)
Q Consensus       543 ~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~  622 (649)
                      ++|+.|...|..+.+|..||+|||+|++|+||+|+++||.||+||+. |++|+|.|||++|.+||+|. +|+|++.+++.
T Consensus       403 ~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~-G~~v~p~eIE~~l~~~p~V~-~~~v~~~~~~~  480 (552)
T PRK09274        403 NRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETA-GGTLYTIPCERIFNTHPGVK-RSALVGVGVPG  480 (552)
T ss_pred             CChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEEC-CEEECcHHHHHHHHhCcccc-eeEEEEeCCCC
Confidence            99999998875334422399999999999999999999999999985 99999999999999999999 99999988764

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-60  Score=532.54  Aligned_cols=459  Identities=24%  Similarity=0.365  Sum_probs=363.2

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAI  160 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i  160 (649)
                      .|+.++|+++++++|+++|++.            +++           .+||+||.++++++|++|.+ .|+++||+|+|
T Consensus        24 ~~~~~~l~~~a~~~p~~~al~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai   80 (562)
T PRK05677         24 PNIQAVLKQSCQRFADKPAFSN------------LGK-----------TLTYGELYKLSGAFAAWLQQHTDLKPGDRIAV   80 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            5899999999999999999985            343           69999999999999999997 59999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCc-
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK-  239 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~-  239 (649)
                      +++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+....+.+..... .++.++..+...... 
T Consensus        81 ~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  159 (562)
T PRK05677         81 QLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-GVKHVIVTEVADMLPP  159 (562)
T ss_pred             ECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-CcceeEEecccccccc
Confidence            999999999999999999999999999999999999999999999999887766555544322 344444332111000 


Q ss_pred             --cCCC-------CC---CCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHH
Q 006354          240 --DSGV-------SG---GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI  307 (649)
Q Consensus       240 --~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~  307 (649)
                        ...+       ..   .........+.+................++++++|+|||||||.||||+++|++++..+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~  239 (562)
T PRK05677        160 LKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQC  239 (562)
T ss_pred             hhhhhcccchhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHH
Confidence              0000       00   00001123445544433322222344577999999999999999999999999998877665


Q ss_pred             HhhC-CCCC-CCcEEEEccChHHHHHHHH-HHHHHHhCceEEe-CCc---ccccccchhhccCccccceeecceEEEech
Q 006354          308 KTLI-PNPG-RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY-GST---LTMTDTSSKIKKGTKGDVSVLKPTLMAAVP  380 (649)
Q Consensus       308 ~~~~-~~~~-~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~-~~~---~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P  380 (649)
                      ...+ ..+. ..+++++.+|++|.+++.. ++.++..|++.++ .++   ..+++.           ++++++|+++++|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p  308 (562)
T PRK05677        240 RALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKE-----------LGKWKFSGFVGLN  308 (562)
T ss_pred             HHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHH-----------HHHcCceEEecHH
Confidence            5543 1233 3468899999999999865 5667788887665 222   223333           9999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHH
Q 006354          381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD  460 (649)
Q Consensus       381 ~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~  460 (649)
                      .++..+......                                               +....+++|.+++||++++++
T Consensus       309 ~~~~~l~~~~~~-----------------------------------------------~~~~~~~lr~v~~gG~~~~~~  341 (562)
T PRK05677        309 TLFVALCNNEAF-----------------------------------------------RKLDFSALKLTLSGGMALQLA  341 (562)
T ss_pred             HHHHHHHhCccc-----------------------------------------------ccCChhhceEEEEcCccCCHH
Confidence            999887652100                                               000113799999999999999


Q ss_pred             HHHHHHhhcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcccccccc
Q 006354          461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG  540 (649)
Q Consensus       461 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~g  540 (649)
                      +.+.|.+.+++++++.||+||++.+++........++++|+|+|+++++|+| +++..   ++.|+.|||+|+|+.++.|
T Consensus       342 ~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~g  417 (562)
T PRK05677        342 TAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVID-DDGNE---LPLGEVGELCVKGPQVMKG  417 (562)
T ss_pred             HHHHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEEEEC-CCCCC---CCCCCCeEEEEecCccchh
Confidence            9999999889999999999999887766655555668999999999999999 45543   7899999999999999999


Q ss_pred             ccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCC
Q 006354          541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGP  620 (649)
Q Consensus       541 Y~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~  620 (649)
                      |+++|+.|++.|.  .+  |||+|||+|++++||++++.||.+|+||++ |++|+|.+||++|.+||+|. +++|+|.++
T Consensus       418 Y~~~~~~t~~~~~--~~--g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~-G~~i~p~eiE~~l~~~~~v~-~~~v~g~~~  491 (562)
T PRK05677        418 YWQRPEATDEILD--SD--GWLKTGDIALIQEDGYMRIVDRKKDMILVS-GFNVYPNELEDVLAALPGVL-QCAAIGVPD  491 (562)
T ss_pred             hcCCchhhhhccC--CC--CcccccceEEECCCCcEEEEecCcCeEEeC-CEEECHHHHHHHHHhCCCcc-EEEEEeccC
Confidence            9999999999986  56  899999999999999999999999999985 99999999999999999999 999999998


Q ss_pred             CCcccchhhhhh
Q 006354          621 MKLASSTKIFQS  632 (649)
Q Consensus       621 ~~~~~~~~~~~~  632 (649)
                      ...++.+.++..
T Consensus       492 ~~~g~~~~~~v~  503 (562)
T PRK05677        492 EKSGEAIKVFVV  503 (562)
T ss_pred             ccCCceEEEEEE
Confidence            877766655443

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=4.6e-62  Score=641.35  Aligned_cols=489  Identities=20%  Similarity=0.249  Sum_probs=400.0

Q ss_pred             CcccccccccCCCccceehheeeecceeEeeehhccccccccccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHH
Q 006354            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (649)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (649)
                      .|++++|+...+..|..++..++..+    +++  |...   ++++++++..+...+..++..+.     .+...+++++
T Consensus      1071 ~y~~~~~~~~~i~~l~~~~~~~l~~~----~~~--p~~~---~~~l~l~~~~~~~~l~~~~~~~~-----~~~~~~l~~~ 1136 (4334)
T PRK05691       1071 DYAAELFDAATIERLAEHFLALLEQV----CED--PQRA---LGDVQLLDAAERAQLAQWGQAPC-----APAQAWLPEL 1136 (4334)
T ss_pred             EEchhhCCHHHHHHHHHHHHHHHHHH----HhC--cccc---hhhhcCCCHHHHHHHHhccCCCC-----CCccCCHHHH
Confidence            68999999999999999888887743    234  6776   88899998888877665554111     1234689999


Q ss_pred             HHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH
Q 006354           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (649)
Q Consensus        88 ~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~  167 (649)
                      |+++++++|+++|+.+            ++.           .+||+||.++++++|++|+++|+++|++|+|+++++++
T Consensus      1137 ~~~~a~~~p~~~Al~~------------~~~-----------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~ 1193 (4334)
T PRK05691       1137 LNEQARQTPERIALVW------------DGG-----------SLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQ 1193 (4334)
T ss_pred             HHHHHHhCCCCeEEEE------------CCc-----------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence            9999999999999986            332           59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCC
Q 006354          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (649)
Q Consensus       168 ~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~  247 (649)
                      +++++|||+++|+++||+||.+|.+++.+++++++++++|++......+...    ... ..+.++..            
T Consensus      1194 ~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~~------------ 1256 (4334)
T PRK05691       1194 LLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA----EGV-SAIALDSL------------ 1256 (4334)
T ss_pred             HHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc----cCc-eEEeeccc------------
Confidence            9999999999999999999999999999999999999999998765443221    111 11111110            


Q ss_pred             CCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChH
Q 006354          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (649)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (649)
                                 .........+.....++++|||+|||||||.||||+++|+++.+.+.+....+ .++++|++++++|++
T Consensus      1257 -----------~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~ 1324 (4334)
T PRK05691       1257 -----------HLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-ALDDSDVLMQKAPIS 1324 (4334)
T ss_pred             -----------cccccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-CCCCCCEEEEeCCcc
Confidence                       00000011112334678999999999999999999999999999999988888 899999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 006354          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (649)
Q Consensus       328 h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (649)
                      |+.+++.++.+|..|+++++.++....+.     ..+...++++++|++.++|++++.+......               
T Consensus      1325 fd~s~~~~~~~L~~G~~l~i~~~~~~~~~-----~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--------------- 1384 (4334)
T PRK05691       1325 FDVSVWECFWPLITGCRLVLAGPGEHRDP-----QRIAELVQQYGVTTLHFVPPLLQLFIDEPLA--------------- 1384 (4334)
T ss_pred             HHHHHHHHHHHHhCCCEEEEcCccccCCH-----HHHHHHHHHcCCeEEECcHHHHHHHHhCccc---------------
Confidence            99999999999999999999654332221     2233349999999999999999988652110               


Q ss_pred             HHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccCcccccccc
Q 006354          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGS  486 (649)
Q Consensus       408 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~  486 (649)
                                                        ...++||.+++|||++++++.+.|.+.+ +++++|.||+||++..+
T Consensus      1385 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 1430 (4334)
T PRK05691       1385 ----------------------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINV 1430 (4334)
T ss_pred             ----------------------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeee
Confidence                                              0114899999999999999999888876 78999999999998777


Q ss_pred             cccCC--CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC---Ccccc
Q 006354          487 TFSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE---RGMCW  561 (649)
Q Consensus       487 ~~~~~--~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~---~~~~w  561 (649)
                      +....  ......++|+|++|++++|+| ++++.   ++.|..|||+|+|+++++||+|+|+.|+++|..++   ++.+|
T Consensus      1431 ~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~ 1506 (4334)
T PRK05691       1431 THWQCQAEDGERSPIGRPLGNVLCRVLD-AELNL---LPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARL 1506 (4334)
T ss_pred             eeeecccccCCCCcccceeCCCEEEEEC-CCCCC---CCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceE
Confidence            64332  233457899999999999999 55543   78999999999999999999999999999997543   24579


Q ss_pred             eeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354          562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK  622 (649)
Q Consensus       562 ~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~  622 (649)
                      |+|||+|++++||.++|+||+|++||++ |+||+|+|||++|.+||+|. +|+|++..+..
T Consensus      1507 yrTGDl~~~~~dG~l~~~GR~d~qiki~-G~rie~~eIE~~l~~~~~V~-~a~v~~~~~~~ 1565 (4334)
T PRK05691       1507 YRTGDRARWNADGALEYLGRLDQQVKLR-GFRVEPEEIQARLLAQPGVA-QAAVLVREGAA 1565 (4334)
T ss_pred             EEccceEEECCCCCEEEecccCcEEEEC-CEEcCHHHHHHHHHhCCCcc-eEEEEEeeCCC
Confidence            9999999999999999999999999995 99999999999999999999 99999766543

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=6.8e-60  Score=524.89  Aligned_cols=449  Identities=23%  Similarity=0.299  Sum_probs=364.5

Q ss_pred             CCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCC
Q 006354           77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT  156 (649)
Q Consensus        77 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd  156 (649)
                      .++...++.+++.++++++|+++|+...+          +++           ++||+||.++++++|++|++.|+++||
T Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~----------~~~-----------~~ty~el~~~~~~la~~L~~~g~~~gd   76 (537)
T PLN02246         18 YIPNHLPLHDYCFERLSEFSDRPCLIDGA----------TGR-----------VYTYADVELLSRRVAAGLHKLGIRQGD   76 (537)
T ss_pred             CCCCCCcHHHHHHHHHHhCCCCeEEEecC----------CCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            44555789999999999999999997531          233           699999999999999999999999999


Q ss_pred             EEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCC
Q 006354          157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG  236 (649)
Q Consensus       157 ~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~  236 (649)
                      +|+++++|+++++++++||+++|++++|++|.++.+++..+++.++++++|++......+...... +.+ .++.++...
T Consensus        77 ~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~-~~i~~~~~~  154 (537)
T PLN02246         77 VVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGV-TVVTIDDPP  154 (537)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCc-eEEEeCCCC
Confidence            999999999999999999999999999999999999999999999999999998887776655432 122 344443321


Q ss_pred             CCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHh----hCC
Q 006354          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT----LIP  312 (649)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~  312 (649)
                      .             ....+.++..... ...+.....++++++++|||||||.||||+++|+++++.+.....    .+ 
T Consensus       155 ~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~-  219 (537)
T PLN02246        155 E-------------GCLHFSELTQADE-NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-  219 (537)
T ss_pred             C-------------CceeHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcccccc-
Confidence            1             1234444433221 112233456889999999999999999999999999988766543    34 


Q ss_pred             CCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHH
Q 006354          313 NPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (649)
Q Consensus       313 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  391 (649)
                      .+.++|++++.+|++|.+++.. ++.++..|+++++.+....        ..++..++++++|++.++|.++..+.+...
T Consensus       220 ~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  291 (537)
T PLN02246        220 YFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEI--------GALLELIQRHKVTIAPFVPPIVLAIAKSPV  291 (537)
T ss_pred             CCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCH--------HHHHHHHHHhCceEEEcchHHHHHHhcCcc
Confidence            7889999999999999999866 5678999999999443211        112333999999999999999988765211


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-C
Q 006354          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-G  470 (649)
Q Consensus       392 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~  470 (649)
                      .                                               .....+++|.+++||+++++++.+++++.+ +
T Consensus       292 ~-----------------------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~  324 (537)
T PLN02246        292 V-----------------------------------------------EKYDLSSIRMVLSGAAPLGKELEDAFRAKLPN  324 (537)
T ss_pred             c-----------------------------------------------cccCccceeEEEEecCcCCHHHHHHHHHHcCC
Confidence            0                                               000114799999999999999999999987 7


Q ss_pred             CccccccCcccccccccccCC-----CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCC
Q 006354          471 APIGQAYGLTETCAGSTFSEW-----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP  545 (649)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~~~-----~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~  545 (649)
                      +.+++.||+||++.+++....     .....+++|+|+++++++|+|++++..   ++.|+.|||+|+|++++.||++++
T Consensus       325 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~---~~~g~~Gel~v~g~~~~~GY~~~~  401 (537)
T PLN02246        325 AVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGAS---LPRNQPGEICIRGPQIMKGYLNDP  401 (537)
T ss_pred             CeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCc---CCCCCceEEEEECCchhccccCCc
Confidence            889999999999876544321     123457899999999999999655544   678999999999999999999999


Q ss_pred             ccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCccc
Q 006354          546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLAS  625 (649)
Q Consensus       546 ~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~  625 (649)
                      +.|++.|.  .+  +||+|||+|++++||++++.||.||+||++ |++|+|.+||++|.+||+|. +|+|++..+...++
T Consensus       402 ~~~~~~~~--~~--~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~-G~~i~~~eIE~~l~~~~~v~-~~~v~~~~~~~~~~  475 (537)
T PLN02246        402 EATANTID--KD--GWLHTGDIGYIDDDDELFIVDRLKELIKYK-GFQVAPAELEALLISHPSIA-DAAVVPMKDEVAGE  475 (537)
T ss_pred             hhhhhccc--CC--CCeeecceEEEeCCCeEEEEecccceEEEC-CEEECcHHHHHHHHhCCCee-EEEEEcccCccCCc
Confidence            99999885  45  899999999999999999999999999985 99999999999999999999 99999988877664


Q ss_pred             ch
Q 006354          626 ST  627 (649)
Q Consensus       626 ~~  627 (649)
                      .+
T Consensus       476 ~~  477 (537)
T PLN02246        476 VP  477 (537)
T ss_pred             ee
Confidence            43

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.4e-61  Score=548.33  Aligned_cols=423  Identities=18%  Similarity=0.212  Sum_probs=342.3

Q ss_pred             CHHHHHHHHHHh--CCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           83 TMAALFEQSCKS--HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        83 tl~~~~~~~a~~--~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ++.++|.+++++  +||++|+..             +.           .+||+||.++++++|++|++.|+++||+|+|
T Consensus         5 ~~~~~~~~~a~~~~~pd~~a~~~-------------~~-----------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i   60 (705)
T PRK06060          5 NLAGLLAEQASEAGWYDRPAFYA-------------AD-----------VVTHGQIHDGAARLGEVLRNRGLSSGDRVLL   60 (705)
T ss_pred             CHHHHHHHHHhhccCCCceEEEe-------------cC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            789999999886  799999974             11           4899999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++......+...       . ++          
T Consensus        61 ~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~-~~----------  122 (705)
T PRK06060         61 CLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS-------R-VA----------  122 (705)
T ss_pred             ECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc-------c-cc----------
Confidence            99999999999999999999999999999999999999999999999987654433210       0 00          


Q ss_pred             CCCCCCCCCceEeehHHHHhcC-CCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHH-hhCCCCCCCc
Q 006354          241 SGVSGGISNWTVSSFSEVEKLG-KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-TLIPNPGRSD  318 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~~d  318 (649)
                                   ...++.... ...+.......++++|||+|||||||.||||+++|+++++.+.+.. ..+ .+..+|
T Consensus       123 -------------~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d  188 (705)
T PRK06060        123 -------------EAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-RLTPED  188 (705)
T ss_pred             -------------hhhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-CCCCcc
Confidence                         000111000 0011111234578999999999999999999999999998887664 456 788899


Q ss_pred             EEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354          319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (649)
Q Consensus       319 ~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~  397 (649)
                      ++++..|++|.+++.. ++.++..|+++++.+...-       ...+...++++++|+++++|+++..+.+....     
T Consensus       189 ~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~-------~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~-----  256 (705)
T PRK06060        189 TGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVT-------PEAAAILSARFGPSVLYGVPNFFARVIDSCSP-----  256 (705)
T ss_pred             eeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCC-------HHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc-----
Confidence            9999999999988754 6778999999998432110       01112238899999999999999888753210     


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccc
Q 006354          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA  476 (649)
Q Consensus       398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~  476 (649)
                                                                  ...++||.+++||+++++++.+.+.+.+ +++++|.
T Consensus       257 --------------------------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~  292 (705)
T PRK06060        257 --------------------------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDG  292 (705)
T ss_pred             --------------------------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEee
Confidence                                                        0013799999999999999999998887 5899999


Q ss_pred             cCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC
Q 006354          477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE  556 (649)
Q Consensus       477 YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~  556 (649)
                      ||+||++..+..........+++|+|+++++++|+| +++..   +++|+.|||||+|++++.||+|+|+.+..     .
T Consensus       293 YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~---~~~g~~GEl~i~g~~v~~GY~~~~~~~~~-----~  363 (705)
T PRK06060        293 IGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVA-PDGTT---AGPGVEGDLWVRGPAIAKGYWNRPDSPVA-----N  363 (705)
T ss_pred             eeccccCceEEeccCCCCCcCcccccCCCcEEEEEC-CCCCC---CCCCCceEEEEccchhhhhhhCCCccccc-----C
Confidence            999999866554444444568899999999999999 44443   78899999999999999999999986532     3


Q ss_pred             CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhh
Q 006354          557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIF  630 (649)
Q Consensus       557 ~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~  630 (649)
                      +  +||+|||+|++++||+++++||+||+||++ |++|+|.|||++|.+||.|. +|+|++..+...++.+.++
T Consensus       364 ~--~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~-G~~v~~~eIE~~l~~~~~V~-~a~vv~~~~~~~~~~~~a~  433 (705)
T PRK06060        364 E--GWLDTRDRVCIDSDGWVTYRCRADDTEVIG-GVNVDPREVERLIIEDEAVA-EAAVVAVRESTGASTLQAF  433 (705)
T ss_pred             C--CcEECCeeEEECCCceEEEecccCceEEEC-CEEECHHHHHHHHHhCCCee-EEEEEeecCccCCeeEEEE
Confidence            4  899999999999999999999999999985 99999999999999999999 9999999887665544443

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-60  Score=529.55  Aligned_cols=443  Identities=19%  Similarity=0.241  Sum_probs=346.0

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..++.+.|.++|+++|+++|+...           ++.          ..+||+||.++++++|++|++.|+++||+|+|
T Consensus        13 ~~~~~~~l~~~a~~~p~~~a~~~~-----------~~~----------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i   71 (540)
T PRK05857         13 PSTVLDRVFEQARQQPEAIALRRC-----------DGT----------SALRYRELVAEVGGLAADLRAQSVSRGSRVLV   71 (540)
T ss_pred             CcchHHHHHHHHhhCCCcEEEeec-----------CCC----------ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEE
Confidence            358999999999999999999753           332          35999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|++++++++|||+++|++++|+++.++.+++.++++.++++.+|++.........+......+. ++.++...... 
T Consensus        72 ~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-  149 (540)
T PRK05857         72 ISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAAVTR-  149 (540)
T ss_pred             EcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeecccccc-
Confidence            9999999999999999999999999999999999999999999999998865432222211112222 22222111000 


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHh----hCCCCCC
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT----LIPNPGR  316 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~  316 (649)
                               .......      ...........++++++++|||||||.||||++||+++.+.......    .+ .+..
T Consensus       150 ---------~~~~~~~------~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~-~~~~  213 (540)
T PRK05857        150 ---------ESEHSLD------AASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWV-TWVV  213 (540)
T ss_pred             ---------ccccccc------ccccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcccccc-cccc
Confidence                     0000000      00011123346789999999999999999999999999877654432    12 4566


Q ss_pred             CcEEEEccChHHHHHHHHHHHHHHhCceEEe--CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHH
Q 006354          317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (649)
Q Consensus       317 ~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  394 (649)
                      ++++++.+|++|..+++..+.+++.|+++++  .++..+.+.           ++++++|+++++|.++..+....... 
T Consensus       214 ~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~-----------i~~~~it~~~~~P~~~~~l~~~~~~~-  281 (540)
T PRK05857        214 GETTYSPLPATHIGGLWWILTCLMHGGLCVTGGENTTSLLEI-----------LTTNAVATTCLVPTLLSKLVSELKSA-  281 (540)
T ss_pred             CceeeecCCccccchHHHHHHHhhcceeEEecCCChhHHHHH-----------HHhcCcceEEeChHHHHHHHhccccC-
Confidence            7899999999999999888889999999877  333444444           99999999999999999887532110 


Q ss_pred             HhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccc
Q 006354          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG  474 (649)
Q Consensus       395 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~  474 (649)
                                                                    ....+++|.+++||++++....+++. .++++++
T Consensus       282 ----------------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~-~~g~~i~  314 (540)
T PRK05857        282 ----------------------------------------------NATVPSLRLVGYGGSRAIAADVRFIE-ATGVRTA  314 (540)
T ss_pred             ----------------------------------------------CCcCccceEEEEcCccCCchhHHHHH-HhCCeee
Confidence                                                          00124899999999999988776554 5699999


Q ss_pred             cccCcccccccccccCCC-----CCCCCccCCCcccceEEEEecCCCCccc--CCCCCCccEEEEccccccccccCCCcc
Q 006354          475 QAYGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKT--SDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (649)
Q Consensus       475 ~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~--~~~~g~~GEl~v~g~~v~~gY~~~~~~  547 (649)
                      +.||+||++......+..     ..+.+++|+|++|++++|+|.+......  .++.|+.|||+|+|++++.||+++++.
T Consensus       315 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~  394 (540)
T PRK05857        315 QVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPER  394 (540)
T ss_pred             cccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccc
Confidence            999999987544332221     1235789999999999999843322211  134578999999999999999999999


Q ss_pred             chhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       548 t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      |++.|   .+  |||+|||+|++|+||++++.||.||+||+ +|++|+|.|||++|..||+|. +|+|++.++...++.+
T Consensus       395 t~~~~---~~--g~~~TGDlg~~d~~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~-~~~v~~~~~~~~~~~~  467 (540)
T PRK05857        395 TAEVL---ID--GWVNTGDLLERREDGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVR-EAACYEIPDEEFGALV  467 (540)
T ss_pred             hhhhc---CC--CceeccceEEEcCCceEEEeccccccEec-CCEEECHHHHHHHHHhCCCee-EEEEEecCccccccce
Confidence            99998   56  89999999999999999999999999997 599999999999999999999 9999999987766544


Q ss_pred             h
Q 006354          628 K  628 (649)
Q Consensus       628 ~  628 (649)
                      .
T Consensus       468 ~  468 (540)
T PRK05857        468 G  468 (540)
T ss_pred             E
Confidence            3

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.8e-60  Score=534.09  Aligned_cols=459  Identities=19%  Similarity=0.213  Sum_probs=346.5

Q ss_pred             CCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCC
Q 006354           77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT  156 (649)
Q Consensus        77 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd  156 (649)
                      +++...|+.++|+++++++|+++|+.+.+..        ++.      .+..+.+||+||.++++++|++|++. +++||
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd   93 (612)
T PRK12476         29 ALPPGTTLISLIERNIANVGDTVAYRYLDHS--------HSA------AGCAVELTWTQLGVRLRAVGARLQQV-AGPGD   93 (612)
T ss_pred             cCCccCcHHHHHHHHHHhCCCceEEEEEccC--------CCC------CCcceEEeHHHHHHHHHHHHHHHHHh-cCCCC
Confidence            3344578999999999999999999874210        100      12234799999999999999999987 99999


Q ss_pred             EEEEEccCCHHHHHHHHHHHhcCCEEEEe-cCCCC--HHHHHHHHhhcCceEEEECchhHHHHHHhhccCCC--ccEEEE
Q 006354          157 RAAILAETCVEWFIAFQGCFRQSITVVTI-YSSLG--EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT--IKNVIY  231 (649)
Q Consensus       157 ~V~i~~~~~~~~vva~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~--~~~ii~  231 (649)
                      +|+++++|+++|+++++||+++|++++|+ ++.++  ++++.+++++++++++|++++..+.+.......+.  ...++.
T Consensus        94 ~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~  173 (612)
T PRK12476         94 RVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIA  173 (612)
T ss_pred             EEEEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEE
Confidence            99999999999999999999999999999 57776  89999999999999999998877666554333322  123443


Q ss_pred             ecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC
Q 006354          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI  311 (649)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~  311 (649)
                      +++...                       .. ..........++|+++|+|||||||.||||++||+++++.+......+
T Consensus       174 ~~~~~~-----------------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~  229 (612)
T PRK12476        174 IDAIPD-----------------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI  229 (612)
T ss_pred             eccccc-----------------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh
Confidence            322100                       00 001111234678999999999999999999999999988877766666


Q ss_pred             CC-CCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccc--eeecceEEEechHHHHHHHH
Q 006354          312 PN-PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV--SVLKPTLMAAVPAIFDRVRE  388 (649)
Q Consensus       312 ~~-~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i--~~~~~t~l~~~P~~l~~l~~  388 (649)
                       . +.+++++++++|++|.+++...+.+++.|+++++..+..+...    +..++..+  .++++|+++.+|.++..+..
T Consensus       230 -~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~----p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~  304 (612)
T PRK12476        230 -DLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRR----PQRWIKALSEGSRTGRVVTAAPNFAYEWAA  304 (612)
T ss_pred             -ccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHH----HHHHHHHHhhhccCCeEEEeCCcHHHHHHH
Confidence             6 7888999999999999999876766666777666433211111    11222226  35889999999999887765


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (649)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~  468 (649)
                      ........                                           .....+++| +++||+++++++.+.|.+.
T Consensus       305 ~~~~~~~~-------------------------------------------~~~~l~~lr-~~~gg~~~~~~~~~~~~~~  340 (612)
T PRK12476        305 QRGLPAEG-------------------------------------------DDIDLSNVV-LIIGSEPVSIDAVTTFNKA  340 (612)
T ss_pred             HhcChhhh-------------------------------------------cCcchhHhe-EEecccCCCHHHHHHHHHH
Confidence            31000000                                           000114789 9999999999999999887


Q ss_pred             c---CC---ccccccCcccccccccccCCCC---------------------------CCCCccCCCcccceEEEEecCC
Q 006354          469 M---GA---PIGQAYGLTETCAGSTFSEWDD---------------------------PSVGRVGPPVPCCYIKLVSWDE  515 (649)
Q Consensus       469 ~---~~---~l~~~YG~TE~~~~~~~~~~~~---------------------------~~~~~vG~p~p~~~v~i~d~~~  515 (649)
                      +   |+   .+++.||+||++..++......                           ...+++|+|+||++++|+|.++
T Consensus       341 ~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~  420 (612)
T PRK12476        341 FAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDT  420 (612)
T ss_pred             HHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCC
Confidence            6   43   4899999999876544322110                           0125899999999999999544


Q ss_pred             CCcccCCCCCCccEEEEccccccccccCCCccchhhhccC-----CC---------cccceeeCcEEEEccCCeEEEEec
Q 006354          516 GGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD-----ER---------GMCWFYTGDIGQVYPDGCLEIIDR  581 (649)
Q Consensus       516 ~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~-----~~---------~~~w~~TGDlg~~~~dG~l~i~GR  581 (649)
                      ++.   +++|+.|||+|+|++++.|||++|+.|++.|...     .+         +.+||+|||+|+++ ||+|+|+||
T Consensus       421 g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR  496 (612)
T PRK12476        421 GAE---LPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGR  496 (612)
T ss_pred             CcC---CCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEec
Confidence            554   7899999999999999999999999999998520     01         23699999999985 999999999


Q ss_pred             CCCeEEcCCceeeeCChhhhHhc-cCcccccc--eEEEecCCCCcccchhhh
Q 006354          582 KKDIVKLQHGEYISLGKIPSTTT-VLPLLFHH--IRLWRNGPMKLASSTKIF  630 (649)
Q Consensus       582 ~dd~iki~~G~~v~~~eIE~~l~-~~p~V~~~--~~V~g~~~~~~~~~~~~~  630 (649)
                      +||+||+ +|++|+|.|||++|. .||.|. +  ++|++.+++. ++.+.++
T Consensus       497 ~~d~I~~-~G~~I~p~eIE~~l~~~~p~V~-~~~v~v~~~~~~~-~~~~~~~  545 (612)
T PRK12476        497 IADLIVI-DGRNHYPQDIEATVAEASPMVR-RGYVTAFTVPAED-NERLVIV  545 (612)
T ss_pred             cCcEEEE-CCcccCHHHHHHHHHHhccccc-CCcEEEEEecCCC-cceEEEE
Confidence            9999998 599999999999998 489999 9  7788887766 4444443

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=8.7e-60  Score=533.26  Aligned_cols=459  Identities=14%  Similarity=0.110  Sum_probs=348.0

Q ss_pred             hCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHH
Q 006354           94 SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQ  173 (649)
Q Consensus        94 ~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~l  173 (649)
                      +.++++|+++..           .       .+..+.+||+||.++++++|++|+++|+++||+|+|+++|++++++++|
T Consensus        96 ~~~~~~a~~~~~-----------~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~l  157 (652)
T TIGR01217        96 AAGTEPALLYVD-----------E-------THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAML  157 (652)
T ss_pred             cCCCCeEEEEEC-----------C-------CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            468899998742           1       1233579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh---------HHHHHHhhccCCCccEEEEecCCCCCccCCCC
Q 006354          174 GCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLKTIKNVIYFENDGSEKDSGVS  244 (649)
Q Consensus       174 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~  244 (649)
                      ||+++|++++|+++.++++++.+++++++++++|+++..         .+.+.++...++.++.++.+......... ..
T Consensus       158 A~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~  236 (652)
T TIGR01217       158 ATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETE-AP  236 (652)
T ss_pred             HHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccc-cc
Confidence            999999999999999999999999999999999998653         35555555566677777776532211000 00


Q ss_pred             CCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHH-HHHHHHhhCCCCCCCcEEEEc
Q 006354          245 GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA-TAAAIKTLIPNPGRSDVYLAY  323 (649)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~~d~~l~~  323 (649)
                      .   ......++++...............++++++|+|||||||.||||+++|++++. ........+ .+.++|+++++
T Consensus       237 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~  312 (652)
T TIGR01217       237 K---IDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-DLGPGDRLFYY  312 (652)
T ss_pred             c---ccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-CCCCCcEEEEe
Confidence            0   011245666654322212222345678999999999999999999999999754 344444455 88899999999


Q ss_pred             cChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHH
Q 006354          324 LPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKN  403 (649)
Q Consensus       324 ~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~  403 (649)
                      +|++|++. ..++.+|+.|+++++.+.......    ...++..++++++|++..+|.+++.+.......          
T Consensus       313 ~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~----~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~----------  377 (652)
T TIGR01217       313 TTTGWMMW-NWLVSGLATGATLVLYDGSPGFPA----TNVLWDIAERTGATLFGTSAKYVMACRKAGVHP----------  377 (652)
T ss_pred             CCcchhhh-HHHHHHHhcCcEEEEECCCCCCCC----chHHHHHHHHhCCeEEecCHHHHHHHHhcCCCc----------
Confidence            99999754 335678999999998532211111    122334499999999988887776654310000          


Q ss_pred             HHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC--CccccccCccc
Q 006354          404 LFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG--APIGQAYGLTE  481 (649)
Q Consensus       404 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~--~~l~~~YG~TE  481 (649)
                                                         .+....++||.+++||+++++++.+++.+.++  ..+.+.||+||
T Consensus       378 -----------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE  422 (652)
T TIGR01217       378 -----------------------------------ARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTD  422 (652)
T ss_pred             -----------------------------------cccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHH
Confidence                                               00111248999999999999999999988775  45678999999


Q ss_pred             ccccccc-cCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccc--cccccccCCCccch--hhhccCC
Q 006354          482 TCAGSTF-SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF--NVTAGYFNNPGKTS--EVYKVDE  556 (649)
Q Consensus       482 ~~~~~~~-~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~--~v~~gY~~~~~~t~--~~f~~~~  556 (649)
                      ++..... .+......+++|.|.+|++++|+| ++++.   + +|+.|||+|+|+  +++.|||++++.|+  +.+....
T Consensus       423 ~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~---~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~  497 (652)
T TIGR01217       423 ICSCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKP---V-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTY  497 (652)
T ss_pred             HhccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCC---C-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCC
Confidence            7543332 222233458899999999999999 55553   3 589999999996  68999999998765  2332112


Q ss_pred             CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhhhh
Q 006354          557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQSCV  634 (649)
Q Consensus       557 ~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~~~  634 (649)
                      +  |||+|||+|++|+||+|+|+||.||+||+ +|+||+|.|||++|.+||.|. +|+|+|.+++..++.+.+++.+.
T Consensus       498 ~--g~~~tGDlg~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~-eaavvg~~~~~~ge~~~afVv~~  571 (652)
T TIGR01217       498 P--GVWRHGDWITLTPRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVR-ESLCIGQEQPDGGYRVVLFVHLA  571 (652)
T ss_pred             C--CEEEcCCcEEECCCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcc-eEEEEeeecCCCCEEEEEEEEEC
Confidence            3  79999999999999999999999999996 599999999999999999999 99999999998887777765543

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-60  Score=525.55  Aligned_cols=457  Identities=21%  Similarity=0.255  Sum_probs=353.8

Q ss_pred             CCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCC
Q 006354           77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT  156 (649)
Q Consensus        77 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd  156 (649)
                      +.++..|+.++|+++++++|+++|+++.           ++.          +.+||+||.++++++|++|.+.|+++||
T Consensus        11 ~~~~~~~l~~~l~~~a~~~p~~~ai~~~-----------~~~----------~~~Ty~~l~~~~~~~a~~L~~~gv~~gd   69 (534)
T PRK05852         11 ASDFGPRIADLVEVAATRLPEAPALVVT-----------ADR----------IAISYRDLARLVDDLAGQLTRSGLLPGD   69 (534)
T ss_pred             hhhhcccHHHHHHHHHHhCCCCcEEEec-----------CCC----------CcccHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            3355689999999999999999999863           221          3699999999999999999999999999


Q ss_pred             EEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCC
Q 006354          157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG  236 (649)
Q Consensus       157 ~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~  236 (649)
                      +|+|+++|+++++++++||+++|++++|++|.++.+++.+++++++++.+|++...........  .......+.+....
T Consensus        70 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~  147 (534)
T PRK05852         70 RVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPT--TRWWPLTVNVGGDS  147 (534)
T ss_pred             EEEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccc--ccccceeeeecccc
Confidence            9999999999999999999999999999999999999999999999999999865332111100  00111111111111


Q ss_pred             CCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCC
Q 006354          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR  316 (649)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  316 (649)
                      ...    .    ......+....  .............++.|+|+|||||||.||||+++|+++.+.+......+ .+.+
T Consensus       148 ~~~----~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-~~~~  216 (534)
T PRK05852        148 GPS----G----GTLSVHLDAAT--EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSP  216 (534)
T ss_pred             ccc----c----ccccccccccc--CCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCC
Confidence            000    0    00000000000  00001111122357889999999999999999999999999998888888 8899


Q ss_pred             CcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHH
Q 006354          317 SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE  395 (649)
Q Consensus       317 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  395 (649)
                      +|++++.+|++|.+++.. ++.++..|+++++.....+ +     ...++..++++++|+++++|.++..+.........
T Consensus       217 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  290 (534)
T PRK05852        217 RDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRF-S-----AHTFWDDIKAVGATWYTAVPTIHQILLERAATEPS  290 (534)
T ss_pred             cceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCc-C-----HHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccc
Confidence            999999999999999876 6677889998887332111 1     11223339999999999999999988764221100


Q ss_pred             hhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcccc
Q 006354          396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ  475 (649)
Q Consensus       396 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~  475 (649)
                                                                   ....+++|.++++|+++++++.+.+.+.+++++++
T Consensus       291 ---------------------------------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~  325 (534)
T PRK05852        291 ---------------------------------------------GRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVC  325 (534)
T ss_pred             ---------------------------------------------cccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhh
Confidence                                                         00114899999999999999999999999999999


Q ss_pred             ccCcccccccccccCCC--------CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCcc
Q 006354          476 AYGLTETCAGSTFSEWD--------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (649)
Q Consensus       476 ~YG~TE~~~~~~~~~~~--------~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~  547 (649)
                      .||+||++..++.....        ....+.+|+ .+|++++|+| ++++.   +++|+.|||+|+|+.++.||+++++.
T Consensus       326 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~---~~~g~~Gel~v~g~~v~~gY~~~~~~  400 (534)
T PRK05852        326 AFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVG-SDGLP---LPAGAVGEVWLRGTTVVRGYLGDPTI  400 (534)
T ss_pred             ccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEEC-CCCCC---CCCCCceEEEEecCcccchhcCCccc
Confidence            99999998766644321        112244454 6999999999 45543   68899999999999999999999999


Q ss_pred             chhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       548 t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      |++.|   .+  |||+|||+|++|+||++++.||.||+||+ +|++|+|.+||++|.+||+|. +|+|+|.++...++.+
T Consensus       401 t~~~~---~~--g~~~TGD~~~~d~dG~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~-~~~v~g~~~~~~g~~~  473 (534)
T PRK05852        401 TAANF---TD--GWLRTGDLGSLSAAGDLSIRGRIKELINR-GGEKISPERVEGVLASHPNVM-EAAVFGVPDQLYGEAV  473 (534)
T ss_pred             chhhh---cC--CCcccCceEEEeCCCcEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCee-eEEEEecCCcCcCceE
Confidence            99998   56  89999999999999999999999999997 599999999999999999999 9999999988766555


Q ss_pred             hhh
Q 006354          628 KIF  630 (649)
Q Consensus       628 ~~~  630 (649)
                      .++
T Consensus       474 ~~~  476 (534)
T PRK05852        474 AAV  476 (534)
T ss_pred             EEE
Confidence            443

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=3.9e-60  Score=528.90  Aligned_cols=443  Identities=25%  Similarity=0.323  Sum_probs=350.4

Q ss_pred             HHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEc
Q 006354           84 MAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILA  162 (649)
Q Consensus        84 l~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~  162 (649)
                      +..+|.+  +++|+++|++...          ++           ..+||+||.++++++|++|++ .|+++||+|+|++
T Consensus        43 ~~~l~~~--~~~~~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~   99 (560)
T PLN02574         43 VSFIFSH--HNHNGDTALIDSS----------TG-----------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLL   99 (560)
T ss_pred             HHHHhcC--cccCCCCEEEECC----------CC-----------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence            3455554  6799999998521          12           258999999999999999999 9999999999999


Q ss_pred             cCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCC
Q 006354          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG  242 (649)
Q Consensus       163 ~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~  242 (649)
                      +|+++++++++||+++|++++|++|.++.+++.++++++++++++++.+..+.+...     ... ++.++......   
T Consensus       100 ~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~---  170 (560)
T PLN02574        100 PNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL-----GVP-VIGVPENYDFD---  170 (560)
T ss_pred             CCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc-----CCc-EEecCcccccc---
Confidence            999999999999999999999999999999999999999999999998876665432     111 22222110000   


Q ss_pred             CCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhh----CCCCCCCc
Q 006354          243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL----IPNPGRSD  318 (649)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~----~~~~~~~d  318 (649)
                          ........+.++...... ........++++++|+|||||||.||||++||+++++.+..+...    +.....++
T Consensus       171 ----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~  245 (560)
T PLN02574        171 ----SKRIEFPKFYELIKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDN  245 (560)
T ss_pred             ----cCccCcccHHHHhhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCc
Confidence                000112345554443322 112234467899999999999999999999999999887765432    21234568


Q ss_pred             EEEEccChHHHHHHHH-HHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHH
Q 006354          319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (649)
Q Consensus       319 ~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  394 (649)
                      +++..+|++|.+++.. ++.++..|+++++.   ++..+.+.           ++++++|++.++|.++..+.+..... 
T Consensus       246 ~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~-  313 (560)
T PLN02574        246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKV-----------IDRFKVTHFPVVPPILMALTKKAKGV-  313 (560)
T ss_pred             EEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHH-----------HHHcCCeEEecCCHHHHHHHhCcccc-
Confidence            8999999999999876 45678889999884   33444444           99999999999999999887632100 


Q ss_pred             HhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCcc
Q 006354          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPI  473 (649)
Q Consensus       395 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l  473 (649)
                                                                   .....+++|.+++||+++++++.+.+.+.+ ++++
T Consensus       314 ---------------------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v  348 (560)
T PLN02574        314 ---------------------------------------------CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDF  348 (560)
T ss_pred             ---------------------------------------------ccCccccceEEEEecccCCHHHHHHHHHHCCCCcE
Confidence                                                         001124899999999999999999888877 7899


Q ss_pred             ccccCcccccccccccCC--CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhh
Q 006354          474 GQAYGLTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV  551 (649)
Q Consensus       474 ~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~  551 (649)
                      ++.||+||++.+++....  .....+++|+|+|+++++|+|++++..   ++.|+.|||||+|++++.||+++++.|++.
T Consensus       349 ~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~---~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~  425 (560)
T PLN02574        349 IQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCL---LPPGNCGELWIQGPGVMKGYLNNPKATQST  425 (560)
T ss_pred             EecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcC---CCCCCCeEEEEECcchhhhhcCChhHhhhh
Confidence            999999999866543221  223568999999999999999766654   678999999999999999999999999998


Q ss_pred             hccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354          552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       552 f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                      |.  .+  |||+|||+|++++||+++++||.||+||+. |++|+|.|||++|.+||.|. +++|++.+++..++...+
T Consensus       426 ~~--~~--g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~-G~~v~~~eiE~~l~~~~~V~-~~~v~~~~~~~~g~~~~a  497 (560)
T PLN02574        426 ID--KD--GWLRTGDIAYFDEDGYLYIVDRLKEIIKYK-GFQIAPADLEAVLISHPEII-DAAVTAVPDKECGEIPVA  497 (560)
T ss_pred             cc--CC--CCcccceEEEEECCCeEEEEecchhheEEC-CEEECHHHHHHHHHhCCCcc-eEEEEccccCCCCcceEE
Confidence            86  56  899999999999999999999999999985 99999999999999999999 999999988876654433

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-59  Score=533.56  Aligned_cols=466  Identities=14%  Similarity=0.115  Sum_probs=354.6

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 006354           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (649)
Q Consensus        83 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (649)
                      ++.+.+.++  .+|+++|+++.+           .       .+..+.+||+||.++++++|++|+++|+++||+|+|++
T Consensus        87 n~~~~~~~~--~~~~~~Al~~~~-----------~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~  146 (655)
T PRK03584         87 NYAENLLRH--RRDDRPAIIFRG-----------E-------DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYL  146 (655)
T ss_pred             eHHHHhhcc--CCCCCeEEEEEC-----------C-------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            444444332  589999998742           1       13345799999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh---------HHHHHHhhccCCCccEEEEec
Q 006354          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLKTIKNVIYFE  233 (649)
Q Consensus       163 ~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~~~~~~ii~~~  233 (649)
                      +|++++++++|||+++|++++|++|.++++++.+++++++++++|+++..         .+.+.++...++.++.++.++
T Consensus       147 ~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  226 (655)
T PRK03584        147 PNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVP  226 (655)
T ss_pred             CCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEe
Confidence            99999999999999999999999999999999999999999999997653         234444555566666777665


Q ss_pred             CCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHH-HHHHHhhCC
Q 006354          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAAIKTLIP  312 (649)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~-~~~~~~~~~  312 (649)
                      .......     .........|+++...............++++++|+|||||||.||||++||++++.. +......+ 
T Consensus       227 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-  300 (655)
T PRK03584        227 YLGPAAA-----AAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-  300 (655)
T ss_pred             cCCCccc-----ccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-
Confidence            3321000     0001123456666542222222234556799999999999999999999999997644 55555566 


Q ss_pred             CCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHH
Q 006354          313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK  392 (649)
Q Consensus       313 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~  392 (649)
                      .+.++|+++++.+++|+... ..+.+|+.|+++++.+.......    ...++..++++++|++.++|++++.+......
T Consensus       301 ~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  375 (655)
T PRK03584        301 DLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPD----PNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV  375 (655)
T ss_pred             CCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCC----HHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC
Confidence            88899999999999987543 35678999999998432211111    12233449999999999999999887642100


Q ss_pred             HHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc--C
Q 006354          393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM--G  470 (649)
Q Consensus       393 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~--~  470 (649)
                      .                                             ......++||.+++||+++++++.+++.+.+  +
T Consensus       376 ~---------------------------------------------~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~  410 (655)
T PRK03584        376 P---------------------------------------------GETHDLSALRTIGSTGSPLPPEGFDWVYEHVKAD  410 (655)
T ss_pred             c---------------------------------------------cccCChhheEEEEEecCCCCHHHHHHHHHHhCCC
Confidence            0                                             0001124899999999999999999998887  4


Q ss_pred             CccccccCccccccccccc-CCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccc--cccccccCCCcc
Q 006354          471 APIGQAYGLTETCAGSTFS-EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF--NVTAGYFNNPGK  547 (649)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~--~v~~gY~~~~~~  547 (649)
                      +.+.+.||+||++...... +......+++|.|++|++++|+| +++..   + +|+.|||+|+|+  +++.|||++++.
T Consensus       411 ~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~---~-~g~~GeL~v~gp~p~~~~gy~~~~~~  485 (655)
T PRK03584        411 VWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRP---V-VGEVGELVCTKPFPSMPLGFWNDPDG  485 (655)
T ss_pred             ceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCC---C-CCCceEEEEccCCCCCcceeeCCCcc
Confidence            7899999999986543322 22233458899999999999999 55543   4 689999999996  799999999986


Q ss_pred             ch--hhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCccc
Q 006354          548 TS--EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLAS  625 (649)
Q Consensus       548 t~--~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~  625 (649)
                      ++  +.+....+  +||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||.|. +|+|+|.+++..++
T Consensus       486 ~~~~~~~~~~~~--g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~-ea~vvg~~~~~~g~  561 (655)
T PRK03584        486 SRYRDAYFDTFP--GVWRHGDWIEITEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVL-DSLVIGQEWPDGDV  561 (655)
T ss_pred             chHHHhhhccCC--CEeecCCeEEECCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcc-eEEEEeeEcCCCCE
Confidence            54  22221123  79999999999999999999999999997 599999999999999999999 99999999988777


Q ss_pred             chhhhhhh
Q 006354          626 STKIFQSC  633 (649)
Q Consensus       626 ~~~~~~~~  633 (649)
                      .+.++..+
T Consensus       562 ~~~a~vv~  569 (655)
T PRK03584        562 RMPLFVVL  569 (655)
T ss_pred             EEEEEEEE
Confidence            66665544

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=3.3e-59  Score=519.53  Aligned_cols=446  Identities=22%  Similarity=0.299  Sum_probs=360.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .|+.++|++.++++|+++|+.+.+          +.       .+..+.+||+||.++++++|++|+++|+++|++|+++
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~~----------~~-------~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~   84 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAYR----------DG-------HGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQ   84 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeec----------cc-------CCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            589999999999999999998631          11       1223469999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH-----HHHHHhhccCCCccEEEEecCCC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFENDG  236 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~ii~~~~~~  236 (649)
                      ++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++....     ..........+.++.++..+...
T Consensus        85 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (538)
T TIGR03208        85 LPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG  164 (538)
T ss_pred             CCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC
Confidence            9999999999999999999999999999999999999999999999987542     22333333445555666654321


Q ss_pred             CCccCCCCCCCCCceEeehHHHHhcCCCCC-------CCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHh
Q 006354          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSP-------VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT  309 (649)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~  309 (649)
                      .               ..++.+........       .......++++++|+|||||||.||||+++|+++...+.....
T Consensus       165 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~  229 (538)
T TIGR03208       165 D---------------DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE  229 (538)
T ss_pred             C---------------cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHh
Confidence            1               11222221110000       0112346789999999999999999999999999999988888


Q ss_pred             hCCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHH
Q 006354          310 LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR  385 (649)
Q Consensus       310 ~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~  385 (649)
                      .+ .+..+|++++++|++|..++.. ++.+++.|+++++.   ++..+.+.           ++++++|++.++|.++..
T Consensus       230 ~~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~p~~~~~  297 (538)
T TIGR03208       230 RL-ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAEL-----------IRETGVTFTMASTPFLTD  297 (538)
T ss_pred             hc-CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHH-----------HHHhCCeEEecCHHHHHH
Confidence            87 8889999999999999988765 67789999999884   44444444           999999999999999988


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHH
Q 006354          386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI  465 (649)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~  465 (649)
                      +........                                               ...+++|.+++||+++++++.+++
T Consensus       298 l~~~~~~~~-----------------------------------------------~~~~~l~~~~~gG~~~~~~~~~~~  330 (538)
T TIGR03208       298 LCRAVKESG-----------------------------------------------APVPSLFTFLCAGAPIPGILVERA  330 (538)
T ss_pred             HHhchhccC-----------------------------------------------CCCCcceEEEEcCCCCCHHHHHHH
Confidence            765321100                                               011489999999999999999998


Q ss_pred             HhhcCCccccccCcccccccccccCCCC--CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccC
Q 006354          466 NICMGAPIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN  543 (649)
Q Consensus       466 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~  543 (649)
                      .+.+++++++.||+||++.+.+......  ....++|+|+|+++++|+| +++..   ++.|+.|||+|+|++++.||++
T Consensus       331 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~---~~~g~~Gel~v~g~~~~~gy~~  406 (538)
T TIGR03208       331 WELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAK---LSQGETGRLLVRGCSNFGGYLK  406 (538)
T ss_pred             HHHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCC---CcCCCCcEEEEecCcccccccC
Confidence            8888999999999999987765544322  2236899999999999999 45543   6789999999999999999999


Q ss_pred             CCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCc
Q 006354          544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKL  623 (649)
Q Consensus       544 ~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~  623 (649)
                      +|+.|..  .  .+  |||+|||+|++++||+++++||.||+||+ +|++|+|.+||++|.+||+|. +++|++.++...
T Consensus       407 ~~~~~~~--~--~~--~~~~TGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~-~~~v~~~~~~~~  478 (538)
T TIGR03208       407 RPHLNST--D--AE--GWFDTGDLAFQDAEGYIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVA-QVAIVAYPDERL  478 (538)
T ss_pred             Ccccccc--c--CC--CceeccceEEECCCCcEEEEeccCceEEE-CCEEECHHHHHHHHhcCccee-eEEEEeccCCCC
Confidence            9988752  2  44  89999999999999999999999999996 599999999999999999999 999999988876


Q ss_pred             ccchhhh
Q 006354          624 ASSTKIF  630 (649)
Q Consensus       624 ~~~~~~~  630 (649)
                      ++...++
T Consensus       479 g~~~~a~  485 (538)
T TIGR03208       479 GERACAV  485 (538)
T ss_pred             CceEEEE
Confidence            6554444

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=2.2e-59  Score=520.61  Aligned_cols=441  Identities=22%  Similarity=0.277  Sum_probs=361.5

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..++.++|+++++++|+++|+..            +++           .+||+||.+++.++|..|.+.|+++|++|++
T Consensus        20 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v   76 (542)
T PRK06155         20 ERTLPAMLARQAERYPDRPLLVF------------GGT-----------RWTYAEAARAAAAAAHALAAAGVKRGDRVAL   76 (542)
T ss_pred             ccCHHHHHHHHHHHCCCCeEEEe------------CCc-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            46899999999999999999985            333           5999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|+++++++++||+++|++++|+++.++.+++..+++++++++++++.+....+.........++.++.++...... 
T Consensus        77 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  155 (542)
T PRK06155         77 MCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVS-  155 (542)
T ss_pred             ECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccc-
Confidence            9999999999999999999999999999999999999999999999999988777766544433455566555332100 


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  320 (649)
                           ....+...   ++..  ...........++++++|+|||||||.||||+++|+++.+........+ .+.+++++
T Consensus       156 -----~~~~~~~~---~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-~~~~~~~~  224 (542)
T PRK06155        156 -----VPAGWSTA---PLPP--LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-EIGADDVL  224 (542)
T ss_pred             -----cccccchh---hhcc--cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-CCCCCCEE
Confidence                 00011111   1111  1111112344678999999999999999999999999998887777777 88999999


Q ss_pred             EEccChHHHHHHHHHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354          321 LAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (649)
Q Consensus       321 l~~~pl~h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~  397 (649)
                      ++.+|++|..++...+.++..|+++++.+   +..+.+.           ++++++|++.++|+++..+.......    
T Consensus       225 l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~~~~l~~~~~~~----  289 (542)
T PRK06155        225 YTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGFWPA-----------VRRHGATVTYLLGAMVSILLSQPARE----  289 (542)
T ss_pred             EEecCHHHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHH-----------HHHhCCcEEEchHHHHHHHHcCcCcc----
Confidence            99999999999988889999999998843   3444444           99999999999999998876532110    


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcccccc
Q 006354          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAY  477 (649)
Q Consensus       398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~Y  477 (649)
                                                                 ....+++|.++.||  +++++.+.+++.+++++++.|
T Consensus       290 -------------------------------------------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~Y  324 (542)
T PRK06155        290 -------------------------------------------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGY  324 (542)
T ss_pred             -------------------------------------------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeee
Confidence                                                       00114788877665  578888888888899999999


Q ss_pred             CcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccc---cccccccCCCccchhhhcc
Q 006354          478 GLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYFNNPGKTSEVYKV  554 (649)
Q Consensus       478 G~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~v~~gY~~~~~~t~~~f~~  554 (649)
                      |+||++.++.... .....+++|.|.++++++|+| ++++.   ++.|..|||+|+|+   +++.||+++++.|++.|  
T Consensus       325 G~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~--  397 (542)
T PRK06155        325 GSTETNFVIAVTH-GSQRPGSMGRLAPGFEARVVD-EHDQE---LPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW--  397 (542)
T ss_pred             cccccCccccCCC-CCCCCCCcCccCCCceEEEEC-CCCCC---CCCCCceEEEEecCCccccchhhcCCHHHHHHhh--
Confidence            9999988766543 234568899999999999998 44543   67899999999998   79999999999999988  


Q ss_pred             CCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354          555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       555 ~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~  628 (649)
                       .+  +||+|||+|++++||+++|+||.||+||+ +|++|+|.+||++|.+||+|. +|+|++..++..++.+.
T Consensus       398 -~~--~~~~TGD~~~~~~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~-~~~v~~v~~~~~~~~~~  466 (542)
T PRK06155        398 -RN--LWFHTGDRVVRDADGWFRFVDRIKDAIRR-RGENISSFEVEQVLLSHPAVA-AAAVFPVPSELGEDEVM  466 (542)
T ss_pred             -cC--CcEeccceEEEcCCceEEEEecCCCEEEe-CCEEECHHHHHHHHHhCCCee-EEEEEeecccccCceEE
Confidence             56  89999999999999999999999999997 599999999999999999999 99999998876654443

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3e-59  Score=517.29  Aligned_cols=447  Identities=23%  Similarity=0.328  Sum_probs=376.3

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .++.++|+++++.+|+++|+.+            +++           .+||+||.+++.++|+.|++.|+++||+|+++
T Consensus         5 ~~i~~~l~~~~~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~   61 (513)
T PRK07656          5 MTLPELLARAARRFGDKEAYVF------------GDQ-----------RLTYAELNARVRRAAAALAALGIGKGDRVAIW   61 (513)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEe------------CCC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            6899999999999999999986            443           69999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++++++++||+++|++++|+++.++.+++..+++++++++++++..............+.++.++.......... 
T Consensus        62 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  140 (513)
T PRK07656         62 APNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPH-  140 (513)
T ss_pred             CCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccC-
Confidence            9999999999999999999999999999999999999999999999999877776666555666666666544322110 


Q ss_pred             CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 006354          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  321 (649)
                             .....+|+++...... ........++++++|+|||||||.||+|.++|+++.+.+......+ .+.++|+++
T Consensus       141 -------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~  211 (513)
T PRK07656        141 -------TEKMKTFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTEGDRYL  211 (513)
T ss_pred             -------ccccccHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-CCCCCCeEE
Confidence                   0123456666544322 1223455788999999999999999999999999999998888887 899999999


Q ss_pred             EccChHHHHHHHH-HHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354          322 AYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (649)
Q Consensus       322 ~~~pl~h~~~~~~-~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~  397 (649)
                      +.+|++|.+++.. ++.++..|+++++.   ++..+.+.           ++++++|++.++|.++..+........   
T Consensus       212 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~~~---  277 (513)
T PRK07656        212 AANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRL-----------IETERITVLPGPPTMYNSLLQHPDRSA---  277 (513)
T ss_pred             EccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHH-----------HHHhCCeEEechHHHHHHHHcCCCcCC---
Confidence            9999999999876 67789999999883   33334444           999999999999999999876421100   


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCC-ccccc
Q 006354          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQA  476 (649)
Q Consensus       398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~-~l~~~  476 (649)
                                                                  ...+++|.+++||+++++++.+.+.+.+++ ++++.
T Consensus       278 --------------------------------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~  313 (513)
T PRK07656        278 --------------------------------------------EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTG  313 (513)
T ss_pred             --------------------------------------------CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeE
Confidence                                                        011489999999999999999999998888 89999


Q ss_pred             cCcccccccccccCCCCC-C--CCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhc
Q 006354          477 YGLTETCAGSTFSEWDDP-S--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK  553 (649)
Q Consensus       477 YG~TE~~~~~~~~~~~~~-~--~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~  553 (649)
                      ||+||++++++.+..... .  .+++|.|+++++++|+| +++..   ++.|..|||+|+|+.++.||+++++.+...|.
T Consensus       314 YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~  389 (513)
T PRK07656        314 YGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEE---VPVGEVGELLVRGPNVMKGYYDDPEATAAAID  389 (513)
T ss_pred             EccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCC---CCCCCceEEEEEcchhhhhhcCCHHHHhhhhc
Confidence            999999887776654332 2  57999999999999999 44543   67899999999999999999999999988874


Q ss_pred             cCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354          554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       554 ~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                        .+  +||+|||+|++++||.++++||.||+||+ +|++|+|.+||++|.++|+|. +++|++..+...++...+
T Consensus       390 --~~--~~~~tGDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~-~~~v~~~~~~~~g~~~~~  459 (513)
T PRK07656        390 --AD--GWLHTGDLGRLDEEGYLYIVDRKKDMFIV-GGFNVYPAEVEEVLYEHPAVA-EAAVIGVPDERLGEVGKA  459 (513)
T ss_pred             --cC--CceeccceEEEcCCeeEEEEecccceEEe-CCEEeCHHHHHHHHHhCCCee-EEEEEecCCcccCceEEE
Confidence              46  89999999999999999999999999998 599999999999999999999 999999988776654433

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=3.6e-59  Score=516.99  Aligned_cols=455  Identities=19%  Similarity=0.244  Sum_probs=361.4

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..++.++|+++++++|+++|+.+.           ++.       +.++.+||+||.++++++|+.|.++|+++||+|++
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~-----------~~~-------~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i   67 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFE-----------SSG-------GVVRRYSYLELNEEINRTANLFYSLGIRKGDKVAL   67 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcc-----------cCC-------CccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            468999999999999999999874           221       33457999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhcc-CCCccEEEEecCCCCCc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS-LKTIKNVIYFENDGSEK  239 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~-~~~~~~ii~~~~~~~~~  239 (649)
                      +++|+++++++++||+++|++++|++|.++.+++.+++++++++.++++.+..+.+.++... ...++.++..+..... 
T Consensus        68 ~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  146 (517)
T PRK08008         68 HLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA-  146 (517)
T ss_pred             EcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc-
Confidence            99999999999999999999999999999999999999999999999999887777665433 2345555554432111 


Q ss_pred             cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  319 (649)
                               .....+++++............+..++++++|+|||||||.||||++||++++.......... .+..+++
T Consensus       147 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~  216 (517)
T PRK08008        147 ---------DDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-ALRDDDV  216 (517)
T ss_pred             ---------cccccCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-CCCCCCe
Confidence                     112334555443322222222344678999999999999999999999999986554433333 6778999


Q ss_pred             EEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhc
Q 006354          320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~  398 (649)
                      +++.+|++|..+... ++.++..|+++++.+...        ...++..++++++|++.++|.+++.+.........   
T Consensus       217 ~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---  285 (517)
T PRK08008        217 YLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYS--------ARAFWGQVCKYRATITECIPMMIRTLMVQPPSAND---  285 (517)
T ss_pred             EEEecCcHHHHHHHHHHHHHHhcCcEEEEccccC--------HHHHHHHHHHcCCcEEechHHHHHHHHhCCCcccc---
Confidence            999999999876554 677899999999843321        11233338999999999999999887642110000   


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccC
Q 006354          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (649)
Q Consensus       399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (649)
                                                                  ...+++.++.+ .+++++....|.+.+++++++.||
T Consensus       286 --------------------------------------------~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG  320 (517)
T PRK08008        286 --------------------------------------------RQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYG  320 (517)
T ss_pred             --------------------------------------------ccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeecc
Confidence                                                        00257777665 478888888888888999999999


Q ss_pred             cccccccccccCC-CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcc---ccccccccCCCccchhhhcc
Q 006354          479 LTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG---FNVTAGYFNNPGKTSEVYKV  554 (649)
Q Consensus       479 ~TE~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g---~~v~~gY~~~~~~t~~~f~~  554 (649)
                      +||++..++.... .....+++|.|+++++++|+| +++..   ++.|+.|||+++|   ++++.||+++++.|++.|. 
T Consensus       321 ~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~-  395 (517)
T PRK08008        321 MTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRD-DHNRP---LPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLE-  395 (517)
T ss_pred             ccccccccccCCccccccCCccccCCCCcEEEEEC-CCCCC---CCCCCcceEEEeCCCCcchhhhHhCChHHHhhccc-
Confidence            9999865554332 233457899999999999999 55544   6789999999998   6999999999999999996 


Q ss_pred             CCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhh
Q 006354          555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIF  630 (649)
Q Consensus       555 ~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~  630 (649)
                       .+  |||+|||+|++++||+++++||.||+||+ +|++|+|.+||+++.+||.|. +|+|+|..+...++.+.++
T Consensus       396 -~~--g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~i~p~~iE~~l~~~~~v~-~~~v~g~~~~~~~~~~~~~  466 (517)
T PRK08008        396 -AD--GWLHTGDTGYVDEEGFFYFVDRRCNMIKR-GGENVSCVELENIIATHPKIQ-DIVVVGIKDSIRDEAIKAF  466 (517)
T ss_pred             -CC--CCeeccceEEECCCCcEEEeecccceEEe-CCEEECHHHHHHHHHhCCcee-eEEEEccCCCCCCceEEEE
Confidence             56  89999999999999999999999999997 599999999999999999999 9999999887766544433

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.4e-59  Score=511.96  Aligned_cols=419  Identities=26%  Similarity=0.336  Sum_probs=352.6

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      +|+.++|+++++++||++|+.+            ++           +.+||+||.++++++|+.|.+.|+++||+|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~------------~~-----------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~   58 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEF------------EE-----------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALL   58 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEe------------CC-----------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            6899999999999999999985            22           369999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|++++++++|||+++|++++|+++..+.+++.+++++++++.++++......+....                     
T Consensus        59 ~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~---------------------  117 (483)
T PRK03640         59 MKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI---------------------  117 (483)
T ss_pred             CCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc---------------------
Confidence            99999999999999999999999999999999999999999999999887655433211                     


Q ss_pred             CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 006354          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  321 (649)
                                ...++++...............++++++++|||||||.||+|++||+++...+......+ ++.++|+++
T Consensus       118 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l  186 (483)
T PRK03640        118 ----------SVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-GLTEDDCWL  186 (483)
T ss_pred             ----------cccHHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-CCCcCcEEE
Confidence                      011333332221111222344678999999999999999999999999988887777777 889999999


Q ss_pred             EccChHHHHHHHHHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhc
Q 006354          322 AYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (649)
Q Consensus       322 ~~~pl~h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~  398 (649)
                      +.+|++|+.++..++.++..|+++++.+   +..+.+.           ++++++|++.++|+++..+.......     
T Consensus       187 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~P~~~~~l~~~~~~~-----  250 (483)
T PRK03640        187 AAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKL-----------LQTGGVTIISVVSTMLQRLLERLGEG-----  250 (483)
T ss_pred             EecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------HHHhCCcEEEeHHHHHHHHHhCcCcc-----
Confidence            9999999999988888999999999844   3334333           99999999999999999887532110     


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccC
Q 006354          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (649)
Q Consensus       399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (649)
                                                                 ....++|.+++||+++++.+.+.++.. ++++++.||
T Consensus       251 -------------------------------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG  286 (483)
T PRK03640        251 -------------------------------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYG  286 (483)
T ss_pred             -------------------------------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeec
Confidence                                                       001389999999999999999988874 999999999


Q ss_pred             cccccccccccCC--CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC
Q 006354          479 LTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE  556 (649)
Q Consensus       479 ~TE~~~~~~~~~~--~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~  556 (649)
                      +||++..+.....  .....+++|+|+++++++|.+ ++ .   +++.|..|||+|+|++++.||+++++.+.+.|   .
T Consensus       287 ~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~-~~-~---~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~---~  358 (483)
T PRK03640        287 MTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK-DG-V---VVPPFEEGEIVVKGPNVTKGYLNREDATRETF---Q  358 (483)
T ss_pred             cCcccccccccCcccccccCCCcccccCCcEEEEec-CC-C---cCCCCCceEEEEECcchhhhhcCCHHHHHHHH---h
Confidence            9998764433322  234558999999999999998 32 2   37889999999999999999999999999998   5


Q ss_pred             CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       557 ~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      +  +||+|||++++++||.++++||+||++|+ +|++|+|.+||+++.++|+|. +++|++.++...++..
T Consensus       359 ~--~~~~tGDl~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~~ie~~i~~~~~v~-~~~v~~~~~~~~~~~~  425 (483)
T PRK03640        359 D--GWFKTGDIGYLDEEGFLYVLDRRSDLIIS-GGENIYPAEIEEVLLSHPGVA-EAGVVGVPDDKWGQVP  425 (483)
T ss_pred             c--CCeeccceEEEcCCCCEEEeecccCeEEe-CCEEECHHHHHHHHHhCCCee-EEEEEeCCCcccCCce
Confidence            6  89999999999999999999999999997 599999999999999999999 9999998887655443

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=3.6e-59  Score=517.86  Aligned_cols=445  Identities=21%  Similarity=0.268  Sum_probs=360.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 006354           80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA  159 (649)
Q Consensus        80 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~  159 (649)
                      ...++.++|+++++++|+++|+.+            +++           .+||+||.++++++|..|++.|+++|++|+
T Consensus        21 ~~~~l~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~   77 (527)
T TIGR02275        21 QDKPLTDILRDQAARYPDAIAIIC------------GNR-----------QWSYRELDQRADNLAAGLTKLGIGQGDTAV   77 (527)
T ss_pred             cCCcHHHHHHHHHHHCCCceEEEe------------CCc-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            346899999999999999999975            333           699999999999999999999999999999


Q ss_pred             EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHH-----HHHHhhccCCCccEEEEecC
Q 006354          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK-----KLSAVSSSLKTIKNVIYFEN  234 (649)
Q Consensus       160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~l~~~~~~~~~~~~ii~~~~  234 (649)
                      ++++|+++++++++||+++|++++++++.++.+++.++++.+++++++++.....     .........+.++.++....
T Consensus        78 i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (527)
T TIGR02275        78 VQLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQ  157 (527)
T ss_pred             EECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecC
Confidence            9999999999999999999999999999999999999999999999999865421     22222233444555554332


Q ss_pred             CCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC
Q 006354          235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (649)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~  314 (649)
                      ....              ........... .........++++|+|+|||||||.||||++||+++...+......+ .+
T Consensus       158 ~~~~--------------~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~  221 (527)
T TIGR02275       158 TRVE--------------AELFLWLESPA-EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-WL  221 (527)
T ss_pred             CCCc--------------chhhHHhhCcC-ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CC
Confidence            1100              00111111111 11122345678999999999999999999999999999988887777 88


Q ss_pred             CCCcEEEEccChHHHHHHHH--HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          315 GRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       315 ~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                      +++|++++.+|++|.+++..  .+.++..|+++++.+   +..+.+           .++++++|++.++|.++..+.+.
T Consensus       222 ~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~-----------~i~~~~~t~~~~~p~~~~~l~~~  290 (527)
T TIGR02275       222 TQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFP-----------LIERHKVTVTALVPPAVALWMQA  290 (527)
T ss_pred             CcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHH-----------HHHHhCCeEEEecHHHHHHHHhC
Confidence            99999999999999999764  677899999998843   333333           38999999999999999887654


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      .....                                               ...+++|.+++||+++++++.+.+.+.+
T Consensus       291 ~~~~~-----------------------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~  323 (527)
T TIGR02275       291 ASKSR-----------------------------------------------YDLSSLKLLQVGGAKFSEAAARRVPAVF  323 (527)
T ss_pred             ccccC-----------------------------------------------CCccceEEEEEcCCCCCHHHHHHHHHHh
Confidence            22100                                               0114899999999999999999999988


Q ss_pred             CCccccccCcccccccccccC-CCCCCCCccCCCc-ccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCcc
Q 006354          470 GAPIGQAYGLTETCAGSTFSE-WDDPSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (649)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~  547 (649)
                      ++++++.||+||++...+... ......+++|+|+ ++++++|+| +++..   +++|+.|||+|+|+.++.||+++++.
T Consensus       324 g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~---~~~g~~Gei~v~g~~~~~gY~~~~~~  399 (527)
T TIGR02275       324 GCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNP---VAPGETGMLLTRGPYTFRGYYKAPEH  399 (527)
T ss_pred             CCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEEC-CCCCC---CCCCCceEEEecCCccchhhcCChhH
Confidence            999999999999764433221 1223347899999 589999998 55543   67899999999999999999999999


Q ss_pred             chhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       548 t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      |.+.|.  .+  |||+|||+|++++||++++.||.||+||+ +|++|+|.+||++|.+||+|. +|+|++.++...++.+
T Consensus       400 ~~~~~~--~d--g~~~TGDl~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~-~~~v~~~~~~~~~~~~  473 (527)
T TIGR02275       400 NAAAFD--AE--GFYYTGDLVRLTPEGYIVVVGRAKDQINR-GGEKIAAEEIENLLLAHPAVH-DAALVSMPDELLGEKS  473 (527)
T ss_pred             hHhhcC--cC--CCEEcCceEEEcCCccEEEEecccceeec-CCEEECHHHHHHHHHhCCCce-EEEEEecCCcccccEE
Confidence            999986  56  89999999999999999999999999996 599999999999999999999 9999999998876555


Q ss_pred             hhhh
Q 006354          628 KIFQ  631 (649)
Q Consensus       628 ~~~~  631 (649)
                      .++.
T Consensus       474 ~a~v  477 (527)
T TIGR02275       474 CAFI  477 (527)
T ss_pred             EEEE
Confidence            4443

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-59  Score=514.82  Aligned_cols=431  Identities=23%  Similarity=0.310  Sum_probs=356.9

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEE
Q 006354           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAIL  161 (649)
Q Consensus        83 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~  161 (649)
                      .+.+.|+++|+++|+++|+..            +++           .+||+||.++++++|++|++ .|+.+|++|+++
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~   59 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIIT------------EEE-----------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAIL   59 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEE------------CCc-----------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            578999999999999999985            443           69999999999999999985 799999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++++++++||+++|++++|+++.++++++.++++.+++++++++++..+.+.+..... ....++.+.        
T Consensus        60 ~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~--------  130 (496)
T PRK06839         60 SQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVS-YVQRVISIT--------  130 (496)
T ss_pred             CCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhcc-CcceEEEec--------
Confidence            99999999999999999999999999999999999999999999999988776665543322 112222221        


Q ss_pred             CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 006354          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  321 (649)
                                  +++++....   ........++++++|+|||||||.||+|+++|+++..........+ .+..+|+++
T Consensus       131 ------------~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l  194 (496)
T PRK06839        131 ------------SLKEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-DLTMHDRSI  194 (496)
T ss_pred             ------------chHhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-CCCCCCeEE
Confidence                        222222211   1122345678999999999999999999999999987777666677 788999999


Q ss_pred             EccChHHHHHHHH-HHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354          322 AYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (649)
Q Consensus       322 ~~~pl~h~~~~~~-~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~  397 (649)
                      ..+|++|..++.. .+.++..|+++++.   ++..+.+.           ++++++|++.++|.+++.+.......    
T Consensus       195 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~----  259 (496)
T PRK06839        195 VLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSM-----------IEKHKVTVVMGVPTIHQALINCSKFE----  259 (496)
T ss_pred             EeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHH-----------HHhhCCeEEEehHHHHHHHHhCcccc----
Confidence            9999999998765 56789999999884   33334444           99999999999999999987632110    


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcccccc
Q 006354          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAY  477 (649)
Q Consensus       398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~Y  477 (649)
                                                                 ....+++|.+++||+++++++.+.+++. |+++++.|
T Consensus       260 -------------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~Y  295 (496)
T PRK06839        260 -------------------------------------------TTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGF  295 (496)
T ss_pred             -------------------------------------------cCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeec
Confidence                                                       0112489999999999999999999886 99999999


Q ss_pred             CcccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccC
Q 006354          478 GLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD  555 (649)
Q Consensus       478 G~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~  555 (649)
                      |+||++..++.....  ....+++|+|+++++++|+|+ +++.   ++.|+.|||+|+|+.++.||+++++.++..+   
T Consensus       296 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---  368 (496)
T PRK06839        296 GMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDE-NKNK---VEVGEVGELLIRGPNVMKEYWNRPDATEETI---  368 (496)
T ss_pred             cCCCCCcceEecccccccccCCCCcccCCCceEEEECC-CcCC---CCCCCceEEEEECCCcchhhcCChHHHHHHH---
Confidence            999998755433322  234589999999999999994 4443   7899999999999999999999999998887   


Q ss_pred             CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhh
Q 006354          556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQ  631 (649)
Q Consensus       556 ~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~  631 (649)
                      .+  |||+|||+|++++||++++.||.||+||. +|++|+|.+||++|.++|+|. +|+|+|.+++..++...++.
T Consensus       369 ~~--g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~-~~~v~~~~~~~~g~~~~~~v  440 (496)
T PRK06839        369 QD--GWLCTGDLARVDEDGFVYIVGRKKEMIIS-GGENIYPLEVEQVINKLSDVY-EVAVVGRQHVKWGEIPIAFI  440 (496)
T ss_pred             cC--CCeeecceEEEcCCCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCee-EEEEEeccccccCceEEEEE
Confidence            56  89999999999999999999999999997 599999999999999999999 99999999988776544443

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=6.4e-59  Score=520.40  Aligned_cols=451  Identities=21%  Similarity=0.287  Sum_probs=347.3

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .|+.++|++.++++|+++|+.+            ++.           .+||+||.++++++|++|.++|+++||+|+|+
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~   70 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIY------------GKT-----------RFTWPQTYDRCCRLAASLISLNITKNDVVSVL   70 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEE------------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            4789999999999999999986            333           69999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCC-----ccEEEEecCCC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT-----IKNVIYFENDG  236 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~-----~~~ii~~~~~~  236 (649)
                      ++|++++++++|||+++|++++|++|.++.+++.++|+.++++++|++.+..+.+.++....+.     ...++.++...
T Consensus        71 ~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (579)
T PLN03102         71 APNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEID  150 (579)
T ss_pred             cCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccc
Confidence            9999999999999999999999999999999999999999999999998887776665443321     12244443221


Q ss_pred             CCccCCCCCCCCCceEeehHHHHhcCCCCCCC----CCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCC
Q 006354          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVD----PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP  312 (649)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~  312 (649)
                      ...       .+.....++.++..........    .....++++++|+|||||||.||||+++|+++..........+ 
T Consensus       151 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-  222 (579)
T PLN03102        151 FPK-------RPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-  222 (579)
T ss_pred             ccc-------CCcccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-
Confidence            110       0011223455554433221111    1234578999999999999999999999999765544444444 


Q ss_pred             CCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       313 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                      .+...++++..+|++|..++...+.++..|+++++..   +..+.+           .|+++++|++.++|+++..|.+.
T Consensus       223 ~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~-----------~i~~~~~t~~~~~P~~~~~l~~~  291 (579)
T PLN03102        223 EMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYK-----------NIEMHNVTHMCCVPTVFNILLKG  291 (579)
T ss_pred             CCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCChHHHHH-----------HHHHcCCeEEEeChHHHHHHHhC
Confidence            5667789999999999999887777888999888733   333333           39999999999999999998763


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      ......                                               ..++++.+++||+++++.+.++++. +
T Consensus       292 ~~~~~~-----------------------------------------------~~~~~~~~~~gg~~~~~~~~~~~~~-~  323 (579)
T PLN03102        292 NSLDLS-----------------------------------------------PRSGPVHVLTGGSPPPAALVKKVQR-L  323 (579)
T ss_pred             cccccC-----------------------------------------------CcccceEEEECCCCCCHHHHHHHHH-c
Confidence            211000                                               0025778999999999999998876 5


Q ss_pred             CCccccccCcccccccccccCCCC--------------CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccc
Q 006354          470 GAPIGQAYGLTETCAGSTFSEWDD--------------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF  535 (649)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~~~--------------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~  535 (649)
                      |+++++.||+||+++.++......              ...+..+.++++  +.+.+.+.+...+ .+.++.|||+|+|+
T Consensus       324 g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~-~~~~~~GEl~v~g~  400 (579)
T PLN03102        324 GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLAD--VDVKNKETQESVP-RDGKTMGEIVIKGS  400 (579)
T ss_pred             CCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccc--eEEeccccccccC-CCCCCceEEEEECc
Confidence            999999999999886543321110              112333444444  4555644443321 12246899999999


Q ss_pred             cccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEE
Q 006354          536 NVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRL  615 (649)
Q Consensus       536 ~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V  615 (649)
                      .++.|||++|+.|++.|   .+  |||+|||+|++|+||++++.||.||+||+ +|++|+|.|||++|.+||.|. +++|
T Consensus       401 ~~~~GY~~~~~~t~~~f---~~--gw~~TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~-~a~v  473 (579)
T PLN03102        401 SIMKGYLKNPKATSEAF---KH--GWLNTGDVGVIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVL-ETAV  473 (579)
T ss_pred             chhhhhcCChhhhHhhh---cc--CceecCceEEEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcc-eeEE
Confidence            99999999999999999   66  89999999999999999999999999997 599999999999999999999 9999


Q ss_pred             EecCCCCcccchhhhhh
Q 006354          616 WRNGPMKLASSTKIFQS  632 (649)
Q Consensus       616 ~g~~~~~~~~~~~~~~~  632 (649)
                      ++.+++..++...++..
T Consensus       474 v~~~~~~~~~~~~a~v~  490 (579)
T PLN03102        474 VAMPHPTWGETPCAFVV  490 (579)
T ss_pred             EeccCccccceeEEEEE
Confidence            99999877665555443

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-59  Score=512.69  Aligned_cols=424  Identities=19%  Similarity=0.217  Sum_probs=349.6

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      +++.++|+++++++|+++|+.+            ++.           .+||+||.++++++|++|.+.|. +|++|+|+
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~   56 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKE------------NDR-----------VLTYKDWFESVCKVANWLNEKES-KNKTIAIL   56 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEec------------CCc-----------EeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence            3688999999999999999975            333           69999999999999999999984 89999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++++++++||+++|++++|+++.++++++.++++.++++++|++......+....      ..++.++        
T Consensus        57 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~--------  122 (487)
T PRK07638         57 LENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEE------GRVIEID--------  122 (487)
T ss_pred             cCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhcc------ceEEEeh--------
Confidence            99999999999999999999999999999999999999999999999986554433110      1122111        


Q ss_pred             CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 006354          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  321 (649)
                                  .+.+....... .........+++++|+|||||||.||||+++|++++..+......+ .+.++|+++
T Consensus       123 ------------~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~  188 (487)
T PRK07638        123 ------------EWKRMIEKYLP-TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-HMKREDSVL  188 (487)
T ss_pred             ------------hhhhhhhhccc-cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CcCCCCEEE
Confidence                        11111111111 1111222356789999999999999999999999999988887777 889999999


Q ss_pred             EccChHHHHHHHHHHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhc
Q 006354          322 AYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (649)
Q Consensus       322 ~~~pl~h~~~~~~~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~  398 (649)
                      ...|++|..++...+.++..|+++++.   ++..+.+.           ++++++|+++++|+++..+.+...       
T Consensus       189 ~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~-------  250 (487)
T PRK07638        189 IAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVLDK-----------LETENISVMYTVPTMLESLYKENR-------  250 (487)
T ss_pred             EeecchHHHHHHHHHHHHccCcEEEEcCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhCcC-------
Confidence            999999998887788899999999984   34444444           999999999999999998875300       


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCcccccc
Q 006354          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY  477 (649)
Q Consensus       399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~Y  477 (649)
                                                                  ...+.+.++++|+++++++.+++...+ ++.+++.|
T Consensus       251 --------------------------------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~Y  286 (487)
T PRK07638        251 --------------------------------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFY  286 (487)
T ss_pred             --------------------------------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEe
Confidence                                                        002455678899999999999999887 78999999


Q ss_pred             CcccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC
Q 006354          478 GLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE  556 (649)
Q Consensus       478 G~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~  556 (649)
                      |+||++.++...... ....+++|+|+++++++|+| +++..   +++|+.|||+|+|+.++.||+++++.+.+.+   .
T Consensus       287 G~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~  359 (487)
T PRK07638        287 GASELSFVTALVDEESERRPNSVGRPFHNVQVRICN-EAGEE---VQKGEIGTVYVKSPQFFMGYIIGGVLARELN---A  359 (487)
T ss_pred             cCCccCceEEecccccCCCCCCCCcccCCcEEEEEC-CCCCC---CCCCCCeEEEEecccceeeecCCHHHHhhhc---c
Confidence            999998776654432 33557999999999999999 55543   7899999999999999999999998877755   5


Q ss_pred             CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhh
Q 006354          557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIF  630 (649)
Q Consensus       557 ~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~  630 (649)
                      +  |||+|||+|++|+||+++++||.+|+||+ +|++|+|.+||++|.+||+|. +|+|++..++..++.+.++
T Consensus       360 ~--g~~~TGDl~~~d~~g~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~-~~~v~~~~~~~~g~~~~~~  429 (487)
T PRK07638        360 D--GWMTVRDVGYEDEEGFIYIVGREKNMILF-GGINIFPEEIESVLHEHPAVD-EIVVIGVPDSYWGEKPVAI  429 (487)
T ss_pred             C--CcEecCccEeEcCCCeEEEEecCCCeEEe-CCEEECHHHHHHHHHhCCCee-eEEEEecCchhcCCeeEEE
Confidence            5  89999999999999999999999999998 599999999999999999999 9999999998777655443

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.9e-59  Score=536.95  Aligned_cols=440  Identities=18%  Similarity=0.230  Sum_probs=342.5

Q ss_pred             CCCCHHHHHHHHHHhCCC-CcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 006354           80 GASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (649)
Q Consensus        80 ~~~tl~~~~~~~a~~~p~-~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (649)
                      ...|+.++|+++++++|+ ++|+..            ++          ++++||+||.++++++|++|++. +++||+|
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~------------~~----------~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V  258 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIED------------VN----------FTPDSYRKLLKKTLFVGRILEKY-SVEGERI  258 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEc------------CC----------CCcccHHHHHHHHHHHHHHHHHh-cCCCceE
Confidence            457999999999999998 577753            11          13699999999999999999887 5999999


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHH--HhhccCCCccEEEEecCCC
Q 006354          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLS--AVSSSLKTIKNVIYFENDG  236 (649)
Q Consensus       159 ~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~--~~~~~~~~~~~ii~~~~~~  236 (649)
                      +|+++|++++++++|||+++|++++|+++.++++++.+++++++++++|++.+..+...  ......+.+..+ .+++..
T Consensus       259 al~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~  337 (718)
T PRK08043        259 GLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWV-YLEDLK  337 (718)
T ss_pred             EEEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEE-Ehhhhh
Confidence            99999999999999999999999999999999999999999999999999877654311  111111222222 222110


Q ss_pred             CCccCCCCCCCCCceEeehHH--HH-hcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCC
Q 006354          237 SEKDSGVSGGISNWTVSSFSE--VE-KLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN  313 (649)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~  313 (649)
                      . .             ..+.+  .. ..............++|+|+|+|||||||.||||++||+++++.+......+ .
T Consensus       338 ~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-~  402 (718)
T PRK08043        338 D-D-------------VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-D  402 (718)
T ss_pred             h-h-------------cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-C
Confidence            0 0             00100  00 0000001111234679999999999999999999999999999988888777 8


Q ss_pred             CCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCc-ccccccchhhccCccccceeecceEEEechHHHHHHHHHHH
Q 006354          314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGST-LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (649)
Q Consensus       314 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~-~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  391 (649)
                      ++++|++++.+|++|.+++.. ++.++..|+++++.+. ...        ..+...++++++|+++++|+++..+.....
T Consensus       403 ~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~--------~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~  474 (718)
T PRK08043        403 FTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHY--------RIVPELVYDRNCTVLFGTSTFLGNYARFAN  474 (718)
T ss_pred             CCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccH--------HHHHHHHHhcCCeEEEchHHHHHHhhhhcC
Confidence            899999999999999999865 6788999999988432 111        111223889999999999999876543100


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCC
Q 006354          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA  471 (649)
Q Consensus       392 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~  471 (649)
                                                                       ....++||.+++||+++++++.+.|++.+|+
T Consensus       475 -------------------------------------------------~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~  505 (718)
T PRK08043        475 -------------------------------------------------PYDFARLRYVVAGAEKLQESTKQLWQDKFGL  505 (718)
T ss_pred             -------------------------------------------------cccccceEEEEEeCccCCHHHHHHHHHHcCC
Confidence                                                             0011489999999999999999999998999


Q ss_pred             ccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccC--CCccc-
Q 006354          472 PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN--NPGKT-  548 (649)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~--~~~~t-  548 (649)
                      ++++.||+||++.+++.........+++|+|+||++++|+|.+ +       .++.|||+++|++++.|||+  +++.+ 
T Consensus       506 ~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d~~-~-------~~~~Gel~v~g~~v~~GY~~~e~~~~~~  577 (718)
T PRK08043        506 RILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVP-G-------IEQGGRLQLKGPNIMNGYLRVEKPGVLE  577 (718)
T ss_pred             CeecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEecCC-C-------CCCceEEEEecCCccccccCCCCccccc
Confidence            9999999999987766554444466899999999999999832 2       23569999999999999998  45532 


Q ss_pred             ------hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354          549 ------SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK  622 (649)
Q Consensus       549 ------~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~  622 (649)
                            .+.+.  .+  |||+|||+|++|+||+++++||+||+||++ |++|+|.|||+++.+|+.+. +++|++.+++.
T Consensus       578 ~~~~~~~~~~~--~~--gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~-G~~V~p~eIE~~l~~~~~~~-~~avv~~~~~~  651 (718)
T PRK08043        578 VPTAENARGEM--ER--GWYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVEQLALGVSPDK-QHATAIKSDAS  651 (718)
T ss_pred             ccccccccccc--cC--CeEecCCEEEEcCCCcEEEEecCCCeeEeC-cEEcCHHHHHHHHHhCCccc-eEEEEEccCCC
Confidence                  22221  34  899999999999999999999999999985 99999999999999999998 88899988887


Q ss_pred             cccchhh
Q 006354          623 LASSTKI  629 (649)
Q Consensus       623 ~~~~~~~  629 (649)
                      .++.+.+
T Consensus       652 ~ge~~v~  658 (718)
T PRK08043        652 KGEALVL  658 (718)
T ss_pred             CCceEEE
Confidence            7765544

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.2e-59  Score=515.89  Aligned_cols=446  Identities=21%  Similarity=0.272  Sum_probs=360.8

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|...++++|+++|+.+            +++           .+||+||.++++++|..|++.|+++||+|+|
T Consensus         6 ~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i   62 (528)
T PRK07470          6 VMNLAHFLRQAARRFPDRIALVW------------GDR-----------SWTWREIDARVDALAAALAARGVRKGDRILV   62 (528)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEE------------CCc-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            46899999999999999999986            333           5899999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|+++++++++||+++|++++|+++.++.+++.++++.++++.++++.+..+.+..+....+....++.++...    
T Consensus        63 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  138 (528)
T PRK07470         63 HSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR----  138 (528)
T ss_pred             EcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc----
Confidence            9999999999999999999999999999999999999999999999999887666655544444555566554321    


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC-CCCCCCcE
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PNPGRSDV  319 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~~d~  319 (649)
                                ...++.++...............++++++|+|||||||.||||+++|+++...+......+ ....++|+
T Consensus       139 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~  208 (528)
T PRK07470        139 ----------AGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDA  208 (528)
T ss_pred             ----------ccccHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccE
Confidence                      1234555544332222233445678999999999999999999999999976655433322 25678899


Q ss_pred             EEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcc
Q 006354          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~  399 (649)
                      ++..+|++|++++..++ .++.|++.++.....+ +     ...++..++++++|++.++|.+++.+......       
T Consensus       209 ~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------  274 (528)
T PRK07470        209 SLVVAPLSHGAGIHQLC-QVARGAATVLLPSERF-D-----PAEVWALVERHRVTNLFTVPTILKMLVEHPAV-------  274 (528)
T ss_pred             EEEeccchhHHHHHHHH-HHhcCceEEEecccCc-C-----HHHHHHHHHhcCCeEEechHHHHHHHHhCcCc-------
Confidence            99999999999987544 5777877766332111 1     11233349999999999999999888653110       


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCc
Q 006354          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL  479 (649)
Q Consensus       400 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~  479 (649)
                                                              +....+++|.+++||++++++..+++.+.++.++++.||+
T Consensus       275 ----------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~  314 (528)
T PRK07470        275 ----------------------------------------DRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGL  314 (528)
T ss_pred             ----------------------------------------CCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCC
Confidence                                                    0011248999999999999999988888889999999999


Q ss_pred             ccccccccccCC--------CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhh
Q 006354          480 TETCAGSTFSEW--------DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV  551 (649)
Q Consensus       480 TE~~~~~~~~~~--------~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~  551 (649)
                      ||+++.++....        .....+++|+|+++++++++| +++..   ++.|+.|||+|+|+.++.||+++++.+++.
T Consensus       315 TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~---~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~  390 (528)
T PRK07470        315 GEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRE---LPPGETGEICVIGPAVFAGYYNNPEANAKA  390 (528)
T ss_pred             cccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCC---CCCCCceEEEEeCCccchhhcCCHHHHHhh
Confidence            999876654322        122347899999999999999 55544   678999999999999999999999999988


Q ss_pred             hccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354          552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       552 f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~  628 (649)
                      |   .+  +||+|||+|++++||++++.||.||+||+ +|++|+|.+||++|.++|.|. +|+|++.+++..++...
T Consensus       391 ~---~~--~~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~-~~~v~~~~~~~~~~~~~  460 (528)
T PRK07470        391 F---RD--GWFRTGDLGHLDARGFLYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVS-EVAVLGVPDPVWGEVGV  460 (528)
T ss_pred             h---cC--CcEecceeEEEccCCeEEEeCCccceEEe-CCEEECHHHHHHHHHhCCCce-EEEEEeccCcccCceeE
Confidence            8   56  89999999999999999999999999997 599999999999999999999 99999998887664443

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.3e-59  Score=516.60  Aligned_cols=445  Identities=21%  Similarity=0.251  Sum_probs=369.9

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      -+++.+.++++++++|+++|+.+            +++           .+||.||.++++++|++|.+.|+++||+|+|
T Consensus        16 ~~n~~~~~~~~a~~~~~~~a~~~------------~~~-----------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i   72 (542)
T PRK07786         16 RQNWVNQLARHALMQPDAPALRF------------LGN-----------TTTWRELDDRVAALAGALSRRGVGFGDRVLI   72 (542)
T ss_pred             ccCHHHHHHHHHHHCCCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            36899999999999999999986            333           5999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|+++++++++||+++|++++|+++..+.+++.++++++++++++++......+.......+.++.++.+++...   
T Consensus        73 ~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  149 (542)
T PRK07786         73 LMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD---  149 (542)
T ss_pred             ECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCc---
Confidence            99999999999999999999999999999999999999999999999998877776665555566677776553211   


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC-CCCcE
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP-GRSDV  319 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~~d~  319 (649)
                               ....+++++....... ........+++++++|||||||.||||++||+++.+.+......+ ++ .++++
T Consensus       150 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~  218 (542)
T PRK07786        150 ---------DSVLGYEDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-GADINSDV  218 (542)
T ss_pred             ---------ccccCHHHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-CCCCCCce
Confidence                     1234566655433222 123345567899999999999999999999999999888877777 55 67899


Q ss_pred             EEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcc
Q 006354          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~  399 (649)
                      +++.+|++|.+++..++.++..|+++++.+...+ +     +..++..++++++|.++++|+++..+.........    
T Consensus       219 ~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~----  288 (542)
T PRK07786        219 GFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAF-D-----PGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR----  288 (542)
T ss_pred             EEEecchHHHHHHHHHHHHHHccCEEEEccCCCc-C-----HHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCcc----
Confidence            9999999999999888889999999988432211 1     12234449999999999999999988763211000    


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccC
Q 006354          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG  478 (649)
Q Consensus       400 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG  478 (649)
                                                                  ..++|.+++||+++++++.+.+++.+ ++++++.||
T Consensus       289 --------------------------------------------~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG  324 (542)
T PRK07786        289 --------------------------------------------DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFG  324 (542)
T ss_pred             --------------------------------------------CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeec
Confidence                                                        02699999999999999999999887 789999999


Q ss_pred             cccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC
Q 006354          479 LTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE  556 (649)
Q Consensus       479 ~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~  556 (649)
                      +||++.+.+.....  ....+++|+|++++.++|+| +++..   ++.|+.|||+++|+.++.||+++++.|+..|   .
T Consensus       325 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f---~  397 (542)
T PRK07786        325 QTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMND---VPVGEVGEIVYRAPTLMSGYWNNPEATAEAF---A  397 (542)
T ss_pred             ccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCC---CcCCCceEEEEEChhhhhhhcCCHHHHHHHh---h
Confidence            99998766543332  23457899999999999999 55543   6789999999999999999999999999998   5


Q ss_pred             CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       557 ~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      +  +||+|||++++++||.++++||.||+||+ +|++|+|.+||++|.+||.|. +|+|++..+...++..
T Consensus       398 ~--~~~~TGDl~~~~~~g~~~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~-~~~v~~~~~~~~~~~~  464 (542)
T PRK07786        398 G--GWFHSGDLVRQDEEGYVWVVDRKKDMIIS-GGENIYCAEVENVLASHPDIV-EVAVIGRADEKWGEVP  464 (542)
T ss_pred             C--CcccccceEEEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCcc-EEEEEeccCcccCceE
Confidence            5  89999999999999999999999999997 599999999999999999999 9999998876655433

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=6.7e-59  Score=517.81  Aligned_cols=448  Identities=20%  Similarity=0.252  Sum_probs=357.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 006354           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (649)
Q Consensus        79 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (649)
                      +...|+.++|.++++++|+++|+.+..          +|+           .+||+||.++++++|++|++.|+++||+|
T Consensus        25 ~~~~~~~~~l~~~a~~~p~~~a~~~~~----------~~~-----------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V   83 (546)
T PLN02330         25 PDKLTLPDFVLQDAELYADKVAFVEAV----------TGK-----------AVTYGEVVRDTRRFAKALRSLGLRKGQVV   83 (546)
T ss_pred             CCCCcHHHHHhhhhhcCCCccEEEecC----------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence            345789999999999999999997521          233           69999999999999999999999999999


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCC
Q 006354          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE  238 (649)
Q Consensus       159 ~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~  238 (649)
                      +++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+....     +. ++.++.... 
T Consensus        84 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-----~~-~i~~~~~~~-  156 (546)
T PLN02330         84 VVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG-----LP-VIVLGEEKI-  156 (546)
T ss_pred             EEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC-----Cc-EEEecCCCC-
Confidence            99999999999999999999999999999999999999999999999999998777665431     12 333332110 


Q ss_pred             ccCCCCCCCCCceEeehHHHHhcCCCCC--CCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC-CCCC
Q 006354          239 KDSGVSGGISNWTVSSFSEVEKLGKRSP--VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PNPG  315 (649)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~-~~~~  315 (649)
                                 .....|.++........  .......++++++|+|||||||.||||++||++++..+....... ....
T Consensus       157 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~  225 (546)
T PLN02330        157 -----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMI  225 (546)
T ss_pred             -----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCcccc
Confidence                       11234555554332211  112334578999999999999999999999999987765432222 1223


Q ss_pred             CCcEEEEccChHHHHHHHH-HHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHH
Q 006354          316 RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (649)
Q Consensus       316 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  391 (649)
                      ..++++..+|++|.+++.. ++.++..|+++++.   ++..+.+.           ++++++|++.++|+++..+.....
T Consensus       226 ~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~  294 (546)
T PLN02330        226 GQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNA-----------LITQEVSFAPIVPPIILNLVKNPI  294 (546)
T ss_pred             CceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHH-----------HHHcCCeeeecCCHHHHHHHhCcc
Confidence            4568999999999999865 56789999999884   33444444           999999999999999998865311


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-C
Q 006354          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-G  470 (649)
Q Consensus       392 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~  470 (649)
                      .....                +                             ...++|.+++||+++++++.+++.+.+ +
T Consensus       295 ~~~~~----------------~-----------------------------~~~~l~~i~~~g~~l~~~~~~~~~~~~~~  329 (546)
T PLN02330        295 VEEFD----------------L-----------------------------SKLKLQAIMTAAAPLAPELLTAFEAKFPG  329 (546)
T ss_pred             ccccc----------------c-----------------------------chheeeeEEEcCCcCCHHHHHHHHHHcCC
Confidence            00000                0                             001589999999999999999999888 8


Q ss_pred             CccccccCcccccccccccCCC-----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCC
Q 006354          471 APIGQAYGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP  545 (649)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~  545 (649)
                      +++++.||+||++.+.......     ....+++|.|+||++++|+|++++..   +++|+.|||+|+|++++.||++++
T Consensus       330 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~---~p~g~~Gel~v~g~~~~~gy~~~~  406 (546)
T PLN02330        330 VQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRS---LPKNTPGELCVRSQCVMQGYYNNK  406 (546)
T ss_pred             CeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCcc---CCCCCceEEEEecchhhhhhccCc
Confidence            9999999999987654332111     12346899999999999999665544   688999999999999999999999


Q ss_pred             ccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCccc
Q 006354          546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLAS  625 (649)
Q Consensus       546 ~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~  625 (649)
                      +.+++.|.  .+  |||+|||+|++++||.++++||.+|+||++ |++|+|.+||++|.++|.|. +++|++.+++..++
T Consensus       407 ~~~~~~~~--~~--g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~-G~~v~~~~iE~~l~~~~~v~-~~~v~~~~~~~~g~  480 (546)
T PLN02330        407 EETDRTID--ED--GWLHTGDIGYIDDDGDIFIVDRIKELIKYK-GFQVAPAELEAILLTHPSVE-DAAVVPLPDEEAGE  480 (546)
T ss_pred             cchhhhcc--CC--CceecccEEEEeCCCcEEEEechHHhhhcC-CEEECHHHHHHHHHhCCchh-eEEEEeccccccCc
Confidence            99998875  45  899999999999999999999999999985 99999999999999999999 99999998887776


Q ss_pred             chhhh
Q 006354          626 STKIF  630 (649)
Q Consensus       626 ~~~~~  630 (649)
                      ...++
T Consensus       481 ~~~a~  485 (546)
T PLN02330        481 IPAAC  485 (546)
T ss_pred             eeEEE
Confidence            54443

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=2.6e-58  Score=523.44  Aligned_cols=465  Identities=17%  Similarity=0.130  Sum_probs=346.3

Q ss_pred             HHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccC
Q 006354           85 AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET  164 (649)
Q Consensus        85 ~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~  164 (649)
                      ..+|+++++++|+++|+++.+          ++.     ..+..+.+||+||.++++++|++|+++|+++||+|+++++|
T Consensus       178 ~~~l~~~~~~~pd~~Ai~~~~----------e~~-----~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn  242 (728)
T PLN03052        178 ECCLTPKPSKTDDSIAIIWRD----------EGS-----DDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPM  242 (728)
T ss_pred             HHHHHHHhccCCCCeEEEEEC----------CCC-----CCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC
Confidence            456766667799999999853          110     01234679999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH------HHHHHhhccCCCccEEEEecCCCCC
Q 006354          165 CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL------KKLSAVSSSLKTIKNVIYFENDGSE  238 (649)
Q Consensus       165 ~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~l~~~~~~~~~~~~ii~~~~~~~~  238 (649)
                      ++++++++|||+++|++++|++|.++++++.+++++++++++|+++...      +....+.....  ..++++......
T Consensus       243 ~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~  320 (728)
T PLN03052        243 NVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKS  320 (728)
T ss_pred             CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCc
Confidence            9999999999999999999999999999999999999999999987532      12222221111  123333321110


Q ss_pred             ccCCCCCCCCCceEeehHHHHhcCCC----CCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC
Q 006354          239 KDSGVSGGISNWTVSSFSEVEKLGKR----SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (649)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~  314 (649)
                      ..  .. .  .....+|+++......    ...++....++++++|+|||||||.||||+++|++++..+......+ .+
T Consensus       321 ~~--~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-~l  394 (728)
T PLN03052        321 VR--VK-L--REGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-DI  394 (728)
T ss_pred             cc--cc-c--ccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-CC
Confidence            00  00 0  0012456666543211    11112223568999999999999999999999999887776666666 88


Q ss_pred             CCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHH
Q 006354          315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (649)
Q Consensus       315 ~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  394 (649)
                      +++|++++++|++|+++.+.++.+|..|+++++.+.....       ..+++.++++++|++.++|++++.+.+....  
T Consensus       395 ~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~-------~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~--  465 (728)
T PLN03052        395 RKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLG-------RGFAKFVQDAKVTMLGTVPSIVKTWKNTNCM--  465 (728)
T ss_pred             CCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCC-------ChHHHHHHHHCCCEEEECHHHHHHHHhcCCc--
Confidence            8999999999999999987778899999999984321110       1123339999999999999999987652100  


Q ss_pred             HhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC-Ccc
Q 006354          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG-API  473 (649)
Q Consensus       395 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~-~~l  473 (649)
                                                                   +..+.++||.+++||++++++...++...++ .++
T Consensus       466 ---------------------------------------------~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i  500 (728)
T PLN03052        466 ---------------------------------------------AGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPI  500 (728)
T ss_pred             ---------------------------------------------ccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCe
Confidence                                                         0111248999999999999999888777665 579


Q ss_pred             ccccCccccccccccc-CCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCC--ccEEEEccc--cccccccCCCccc
Q 006354          474 GQAYGLTETCAGSTFS-EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP--RGEIVVGGF--NVTAGYFNNPGKT  548 (649)
Q Consensus       474 ~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~--~GEl~v~g~--~v~~gY~~~~~~t  548 (649)
                      .+.||+||+++..... +......+++|.|++|++++|+| ++++.   ++.|+  .|||+++++  ....+|+++. .+
T Consensus       501 ~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~---v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~  575 (728)
T PLN03052        501 IEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNP---YPDDAPCTGELALFPLMFGASSTLLNAD-HY  575 (728)
T ss_pred             EeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCC---CCCCCCceEEEEEeCCCCCCCccccCch-hh
Confidence            9999999987654332 22233568899999999999999 66654   56664  699999865  3345677764 33


Q ss_pred             hhhhccCC--CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhc-cCcccccceEEEecCCCCcc-
Q 006354          549 SEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTT-VLPLLFHHIRLWRNGPMKLA-  624 (649)
Q Consensus       549 ~~~f~~~~--~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~-~~p~V~~~~~V~g~~~~~~~-  624 (649)
                      ..-|...+  ++++||+|||+|++|+||+++|+||.||+||+ +|+||+|.|||++|. .||.|. +|+|+|.+++..| 
T Consensus       576 ~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~-eaaVvg~~d~~~g~  653 (728)
T PLN03052        576 KVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVL-ETAAIGVPPPGGGP  653 (728)
T ss_pred             hhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcc-eEEEEeeecCCCCc
Confidence            33342212  23459999999999999999999999999998 599999999999994 899999 9999999988766 


Q ss_pred             cchhhhhhh
Q 006354          625 SSTKIFQSC  633 (649)
Q Consensus       625 ~~~~~~~~~  633 (649)
                      +.+.+++.+
T Consensus       654 e~~~afVvl  662 (728)
T PLN03052        654 EQLVIAAVL  662 (728)
T ss_pred             EEEEEEEEE
Confidence            555555443

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=6.9e-58  Score=535.12  Aligned_cols=474  Identities=19%  Similarity=0.269  Sum_probs=384.7

Q ss_pred             cCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCC
Q 006354           76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD  155 (649)
Q Consensus        76 ~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~g  155 (649)
                      .+++...|+.++|++.++++|+++|+..+.          +        .++++++||+|+.++++++|++|+++|+++|
T Consensus       421 ~~~~~~~Tl~dll~~~a~~~pd~~al~~~~----------~--------~g~~~~lTY~El~~~V~~lAa~L~~lGV~~G  482 (1452)
T PTZ00297        421 NPLAGVRSLGEMWERSVTRHSTFRCLGQTS----------E--------SGESEWLTYGTVDARARELGSGLLALGVRPG  482 (1452)
T ss_pred             CCcccCCCHHHHHHHHHHHCCCCeEEEEec----------c--------CCCceEEEHHHHHHHHHHHHHHHHHcCCCCC
Confidence            344666799999999999999999997431          0        1345689999999999999999999999999


Q ss_pred             CEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCC
Q 006354          156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND  235 (649)
Q Consensus       156 d~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~  235 (649)
                      |+|+|+++|+++|+++.+||+++|+++||+++  +.+++.+++++++++++|++.+..+++.++..  +.++.||++++.
T Consensus       483 DrVaIls~N~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~  558 (1452)
T PTZ00297        483 DVIGVDCEASRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSF  558 (1452)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCC
Confidence            99999999999999999999999999999985  46799999999999999999888887766543  378899998642


Q ss_pred             CCCccCCCCCCCCCceEeehHHHHhcCCCCCCC-CCCCCCCCeEEEEe---ecCCCCCcceEEechHHHHHHHHHHHhhC
Q 006354          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVD-PSLPSQNGVAVIMY---TSGSTGLPKGVMITHGNIVATAAAIKTLI  311 (649)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~---TSGSTG~PKgV~~th~~l~~~~~~~~~~~  311 (649)
                      ........ ....++..++|+++...+.....+ ....+++|++.|+|   ||||||.||||++||+|+++.+.......
T Consensus       559 ~~~~~~~~-~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~  637 (1452)
T PTZ00297        559 YDEDDHAV-ARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTG  637 (1452)
T ss_pred             cccccccc-cccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhc
Confidence            11000000 001234578899998876432221 23447889999996   99999999999999999999998876532


Q ss_pred             --CCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          312 --PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       312 --~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                        +...++|++++++|++|+++....+.+++.|++++++++..+.+.           +++++||+++++|++|+.+.+.
T Consensus       638 ~~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~d~~~lled-----------L~~~rPTv~~~VPrv~ekI~~~  706 (1452)
T PTZ00297        638 VLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVATVDAAHLQRA-----------FVKFQPTILVAAPSLFSTSRLQ  706 (1452)
T ss_pred             cccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEeCCHHHHHHH-----------HHHHCCEEEEecHHHHHHHHHH
Confidence              245678999999999999998777888999999988887777777           9999999999999999999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCC--CCCHHHHHHHHh
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGA--PLSADSQRFINI  467 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~--~l~~~~~~~~~~  467 (649)
                      +.++....+.+++++|++|.+.+.+.+..     ....++++|+++|+++|+.+|+++|.+++||+  +++..+..    
T Consensus       707 i~~~~~~~~~~~~~lf~~A~~~k~~~~~~-----g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~----  777 (1452)
T PTZ00297        707 LSRANERYSAVYSWLFERAFQLRSRLINI-----HRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE----  777 (1452)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC----
Confidence            98888888889999999999987765542     13456699999999999999999999999984  55544333    


Q ss_pred             hcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCcc
Q 006354          468 CMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (649)
Q Consensus       468 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~  547 (649)
                        +++++.+||+||+.   +.+...+..  ..|+|+|+++++|.+.++.+.     .+..|||+++       |++||+.
T Consensus       778 --~i~i~~g~glTE~~---~~~~~~~~~--~~G~PlpgvEvKI~~~~E~~~-----~~~~GEIlvr-------~~kdpe~  838 (1452)
T PTZ00297        778 --HISVCYVPCLREVF---FLPSEGVFC--VDGTPAPSLQVDLEPFDEPSD-----GAGIGQLVLA-------KKGEPRR  838 (1452)
T ss_pred             --CceEEEecceEEee---eecCCCCcc--cCCeecCceEEEEcccccccC-----CCCCCeEEEE-------ECCChHH
Confidence              57788899999953   333333333  349999999999998555432     1247999995       4689999


Q ss_pred             chhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       548 t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      |++.+    +  ||+         +||+|+|+||+||+||+++|++|+|+.||+.+.++|.|. +++|+|++.+.....+
T Consensus       839 T~e~~----~--gW~---------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~-qi~V~Gd~~k~lvALV  902 (1452)
T PTZ00297        839 TLPIA----A--QWK---------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVN-DIFLYADPSRPIIAIV  902 (1452)
T ss_pred             HHHhh----C--cCc---------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCcc-EEEEEecCCCceEEEE
Confidence            99853    3  675         699999999999999999999999999999999999999 9999999888766544

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=2.5e-58  Score=513.72  Aligned_cols=447  Identities=21%  Similarity=0.298  Sum_probs=364.8

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|+++++++|+++|+...           +|+           .+||+||.++++++|++|++.|+++||+|++
T Consensus        22 ~~~l~~~~~~~~~~~pd~~a~~~~-----------~~~-----------~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i   79 (547)
T PRK06087         22 DASLADYWQQTARAMPDKIAVVDN-----------HGA-----------SYTYSALDHAASRLANWLLAKGIEPGDRVAF   79 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEcC-----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            368999999999999999999752           333           6999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECch-----hHHHHHHhhccCCCccEEEEecCC
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK-----QLKKLSAVSSSLKTIKNVIYFEND  235 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-----~~~~l~~~~~~~~~~~~ii~~~~~  235 (649)
                      +++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++..     ..+.+..+....+.++.++.++..
T Consensus        80 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (547)
T PRK06087         80 QLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKL  159 (547)
T ss_pred             ECCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCc
Confidence            999999999999999999999999999999999999999999999999753     233444444455566666665543


Q ss_pred             CCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCC
Q 006354          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG  315 (649)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~  315 (649)
                      ...           ....++.++....... .......++++++|+|||||||.||+|++||++++.........+ .+.
T Consensus       160 ~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~  226 (547)
T PRK06087        160 APA-----------TSSLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-NLT  226 (547)
T ss_pred             CCC-----------cCccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCC
Confidence            211           1122444444332211 122345678999999999999999999999999998888877777 889


Q ss_pred             CCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCc---ccccccchhhccCccccceeecceEEEechHHHHHHHHHHH
Q 006354          316 RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGST---LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (649)
Q Consensus       316 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~---~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  391 (649)
                      ++|++++.+|++|.++++. ++.++..|+++++...   ..+.+.           ++++++|+++.+|..+..++....
T Consensus       227 ~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~~~~~~~~l~~~~  295 (547)
T PRK06087        227 WQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLAL-----------LEQQRCTCMLGATPFIYDLLNLLE  295 (547)
T ss_pred             CCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------HHHcCCCEEeccHHHHHHHHhccc
Confidence            9999999999999999765 6678899999998443   333333           899999999988877766654321


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCC
Q 006354          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA  471 (649)
Q Consensus       392 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~  471 (649)
                      ..                                               ....+++|.+++||+++++++.+.+... ++
T Consensus       296 ~~-----------------------------------------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~  327 (547)
T PRK06087        296 KQ-----------------------------------------------PADLSALRFFLCGGTTIPKKVARECQQR-GI  327 (547)
T ss_pred             cC-----------------------------------------------CCCCCCeEEEEEcCCCCCHHHHHHHHHc-CC
Confidence            10                                               0012489999999999999998888775 99


Q ss_pred             ccccccCcccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccch
Q 006354          472 PIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS  549 (649)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~  549 (649)
                      ++++.||+||++.+.......  ....+++|.|++++.++++| +++..   ++.|+.|||+|+|++++.||+++++.+.
T Consensus       328 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gy~~~~~~~~  403 (547)
T PRK06087        328 KLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKT---LPPGCEGEEASRGPNVFMGYLDEPELTA  403 (547)
T ss_pred             cEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCC---CcCCCcceEEEecccccccccCCHHHHH
Confidence            999999999998776544322  12346789999999999999 55543   6789999999999999999999999999


Q ss_pred             hhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354          550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       550 ~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                      +.|.  .+  +||+|||+++++++|+++++||.||+|++ +|++|+|.+||++|.++|+|. +++|++..++..|+.+.+
T Consensus       404 ~~~~--~~--g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~-~~~v~~~~~~~~g~~~~~  477 (547)
T PRK06087        404 RALD--EE--GWYYSGDLCRMDEAGYIKITGRKKDIIVR-GGENISSREVEDILLQHPKIH-DACVVAMPDERLGERSCA  477 (547)
T ss_pred             HHhC--CC--CCcCcCceEEECCCCCEEEEecchhhhhc-CCEEECHHHHHHHHHhCCCee-EEEEEecCCCCcCceEEE
Confidence            9885  45  89999999999999999999999999996 699999999999999999999 999999988877765544


Q ss_pred             hh
Q 006354          630 FQ  631 (649)
Q Consensus       630 ~~  631 (649)
                      +.
T Consensus       478 ~v  479 (547)
T PRK06087        478 YV  479 (547)
T ss_pred             EE
Confidence            43

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.2e-58  Score=515.50  Aligned_cols=463  Identities=18%  Similarity=0.286  Sum_probs=368.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAI  160 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i  160 (649)
                      .|+.++|++++..+|+++|+.+            ++.        ..+.+||+||.+++.++|++|++ .|+++||+|++
T Consensus        10 ~~~~~~l~~~a~~~~~~~a~~~------------~~~--------~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~   69 (576)
T PRK05620         10 LSLTRILEYGSTVHGDTTVTTW------------GGA--------EQEQTTFAAIGARAAALAHALHDELGITGDQRVGS   69 (576)
T ss_pred             CcHHHHHHHHHHhCCCceEEEE------------cCC--------ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            5899999999999999999986            221        12579999999999999999986 79999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|+++++++++||+++|++++|++|.++.+++.++++.++++++|++....+.+.+.....+..+.++.++...... 
T Consensus        70 ~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  148 (576)
T PRK05620         70 MMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADS-  148 (576)
T ss_pred             EeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCccccc-
Confidence            9999999999999999999999999999999999999999999999999988888777766666777777665332111 


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHH--HhhCCCCCCCc
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPGRSD  318 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d  318 (649)
                       .....+......+|.++...... ........++++++++|||||||.||||+++|+++.......  ...+ .+..++
T Consensus       149 -~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-~~~~~~  225 (576)
T PRK05620        149 -AAAHMPEGIKVYSYEALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-AVTHGE  225 (576)
T ss_pred             -chhccccccccccHHHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-CCCCCC
Confidence             00111223445678888764322 222234567899999999999999999999999987655443  2345 778899


Q ss_pred             EEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhc
Q 006354          319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (649)
Q Consensus       319 ~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~  398 (649)
                      ++++.+|++|.+++...+.++..|+++++..+..  +     ...++..++++++|+++++|.++..+.........   
T Consensus       226 ~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~--~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---  295 (576)
T PRK05620        226 SFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDL--S-----APTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP---  295 (576)
T ss_pred             eEEEeCChHHhhhhHHHHHHHhcCceEEecCCCC--C-----HHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc---
Confidence            9999999999999988888999999998843211  1     11233339999999999999999887654211000   


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccC
Q 006354          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (649)
Q Consensus       399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (649)
                                                                  ...++|.+++||+++++++.+.|++.+++++++.||
T Consensus       296 --------------------------------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG  331 (576)
T PRK05620        296 --------------------------------------------ERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWG  331 (576)
T ss_pred             --------------------------------------------ccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeecc
Confidence                                                        003799999999999999999999888999999999


Q ss_pred             cccccccccccCCCC--------CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccc--
Q 006354          479 LTETCAGSTFSEWDD--------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT--  548 (649)
Q Consensus       479 ~TE~~~~~~~~~~~~--------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t--  548 (649)
                      +||++..++.....+        ....++|++.++++++++| + +.... .+.+..|||+++|+.++.||+++++.|  
T Consensus       332 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~-~~~~~~Gel~v~g~~~~~gY~~~~~~t~~  408 (576)
T PRK05620        332 MTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVME-STDRNEGEIQVRGNWVTASYYHSPTEEGG  408 (576)
T ss_pred             ccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-Ccccc-CCCCCceEEEEEcCcccccccCCcccccc
Confidence            999987765433211        1124789999999999998 3 43321 345678999999999999999999988  


Q ss_pred             --hhhhccC----------CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEE
Q 006354          549 --SEVYKVD----------ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLW  616 (649)
Q Consensus       549 --~~~f~~~----------~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~  616 (649)
                        ...|..+          .+  |||+|||+|++++||.++++||.||+||+ +|++|+|.+||++|.+||.|. +|+|+
T Consensus       409 ~~~~~f~~~~~~~~~~~~~~~--g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~-~~~vv  484 (576)
T PRK05620        409 GAASTFRGEDVEDANDRFTAD--GWLRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVV-ECAVI  484 (576)
T ss_pred             ccccccccccchhhhcccccC--CcEecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCce-EEEEE
Confidence              3333211          23  89999999999999999999999999996 599999999999999999999 99999


Q ss_pred             ecCCCCcccchhh
Q 006354          617 RNGPMKLASSTKI  629 (649)
Q Consensus       617 g~~~~~~~~~~~~  629 (649)
                      +.++...|+...+
T Consensus       485 ~~~~~~~g~~~~a  497 (576)
T PRK05620        485 GYPDDKWGERPLA  497 (576)
T ss_pred             eccCCCcCceeEE
Confidence            9998876655444

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.1e-58  Score=515.86  Aligned_cols=447  Identities=24%  Similarity=0.329  Sum_probs=362.9

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..++.++|++.++++|+++|+.+.           ++.          +.+||+||.++++++|+.|.+.|+++||+|++
T Consensus        15 ~~~l~~~l~~~~~~~~~~~ai~~~-----------~~~----------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i   73 (559)
T PRK08315         15 EQTIGQLLDRTAARYPDREALVYR-----------DQG----------LRWTYREFNEEVDALAKGLLALGIEKGDRVGI   73 (559)
T ss_pred             hccHHHHHHHHHHHCCCCeEEEEc-----------CCC----------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            368999999999999999999874           222          36999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH-----HHHHHhhcc-------------
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSS-------------  222 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~-------------  222 (649)
                      +++|++++++++|||+++|++++|++|.++.+++..+++.++++++|++.+..     ..+.+....             
T Consensus        74 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (559)
T PRK08315         74 WAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSAR  153 (559)
T ss_pred             ECCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhccccccccccc
Confidence            99999999999999999999999999999999999999999999999987542     122221111             


Q ss_pred             CCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCC-----CCCCCCCCCCCeEEEEeecCCCCCcceEEech
Q 006354          223 LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRS-----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH  297 (649)
Q Consensus       223 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th  297 (649)
                      .+..+.++.++...            ......++++.......     ........++++++++|||||||.||+|.+||
T Consensus       154 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~  221 (559)
T PRK08315        154 LPELRRVIFLGDEK------------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTH  221 (559)
T ss_pred             CCCceeEEeecccC------------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeH
Confidence            12334444433221            11234455554332111     11123345788999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEe----CCcccccccchhhccCccccceeec
Q 006354          298 GNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY----GSTLTMTDTSSKIKKGTKGDVSVLK  372 (649)
Q Consensus       298 ~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~----~~~~~l~~~~~~~~~~~~~~i~~~~  372 (649)
                      ++++..+......+ .+.++|+++..+|++|.+++.. ++.++..|+++++    .++..+++.           +++++
T Consensus       222 ~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~-----------l~~~~  289 (559)
T PRK08315        222 RNILNNGYFIGEAM-KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAA-----------VEEER  289 (559)
T ss_pred             HHHHHHHHHHHHhc-CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHH-----------HHHcC
Confidence            99999988888888 8999999999999999999865 6778999999985    344444444           99999


Q ss_pred             ceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEe
Q 006354          373 PTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMIC  452 (649)
Q Consensus       373 ~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~  452 (649)
                      +|+++++|.++..+.......                                               ....++||.+++
T Consensus       290 ~t~~~~~P~~~~~~~~~~~~~-----------------------------------------------~~~~~~lr~~~~  322 (559)
T PRK08315        290 CTALYGVPTMFIAELDHPDFA-----------------------------------------------RFDLSSLRTGIM  322 (559)
T ss_pred             CeEEecchHHHHHHHhCcccC-----------------------------------------------CCCchhhheeEe
Confidence            999999999998776421100                                               001147999999


Q ss_pred             cCCCCCHHHHHHHHhhcCC-ccccccCcccccccccccCCCC---CCCCccCCCcccceEEEEecCCCCcccCCCCCCcc
Q 006354          453 GGAPLSADSQRFINICMGA-PIGQAYGLTETCAGSTFSEWDD---PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG  528 (649)
Q Consensus       453 gG~~l~~~~~~~~~~~~~~-~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~G  528 (649)
                      ||+++++++.+.+.+.++. ++++.||+||++.+++......   ....++|+|+||++++|+|++++..   |+.|+.|
T Consensus       323 ~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~---~~~g~~G  399 (559)
T PRK08315        323 AGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGET---VPRGEQG  399 (559)
T ss_pred             cCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCc---CCCCCce
Confidence            9999999999999888865 4999999999987766544332   3468999999999999999665654   7899999


Q ss_pred             EEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcc
Q 006354          529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPL  608 (649)
Q Consensus       529 El~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~  608 (649)
                      ||+|+|++++.||+++|+.+++.|.  .+  +||+|||+|++++||.++++||.||+||+ +|++|+|.+||++|.++|+
T Consensus       400 El~v~g~~~~~gy~~~~~~~~~~~~--~~--~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~  474 (559)
T PRK08315        400 ELCTRGYSVMKGYWNDPEKTAEAID--AD--GWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPK  474 (559)
T ss_pred             EEEEECchhhhhhcCChhHHhhcCC--CC--CCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCC
Confidence            9999999999999999999998885  45  89999999999999999999999999997 5999999999999999999


Q ss_pred             cccceEEEecCCCCcccchh
Q 006354          609 LFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       609 V~~~~~V~g~~~~~~~~~~~  628 (649)
                      |. +++|++..++..++.+.
T Consensus       475 v~-~~~v~~~~~~~~~~~~~  493 (559)
T PRK08315        475 IQ-DVQVVGVPDEKYGEEVC  493 (559)
T ss_pred             ce-EEEEEecCCCCCCeEEE
Confidence            99 99999998876554443

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.9e-58  Score=517.32  Aligned_cols=458  Identities=22%  Similarity=0.298  Sum_probs=365.1

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .++.++|+++++++|+++|+.+            +++           .+||+||.++++++|++|.+.|+++||+|+++
T Consensus        32 ~~l~~~~~~~~~~~p~~~a~~~------------~~~-----------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~   88 (573)
T PRK05605         32 TTLVDLYDNAVARFGDRPALDF------------FGA-----------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIV   88 (573)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            5899999999999999999987            443           58999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc-
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD-  240 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~-  240 (649)
                      ++|+++++++++||+++|++++|++|.++.+++.+++++++++++|+++.....+..+.... .++.++.++....... 
T Consensus        89 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~  167 (573)
T PRK05605         89 LPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVNMIAAMPLL  167 (573)
T ss_pred             CCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeeecccccccc
Confidence            99999999999999999999999999999999999999999999999988776665544322 2344444432110000 


Q ss_pred             -C--------CCC-----CCCCCceEeehHHHHhcCCCCC---CCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHH
Q 006354          241 -S--------GVS-----GGISNWTVSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT  303 (649)
Q Consensus       241 -~--------~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~  303 (649)
                       .        .+.     .........+|.++........   .......++++++++|||||||.||+|++||++++..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~  247 (573)
T PRK05605        168 QRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN  247 (573)
T ss_pred             cccccccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHH
Confidence             0        000     0001123345666554322110   1223456789999999999999999999999999888


Q ss_pred             HHHHHhhCCCC-CCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEe
Q 006354          304 AAAIKTLIPNP-GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAA  378 (649)
Q Consensus       304 ~~~~~~~~~~~-~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~  378 (649)
                      +......+..+ ..++++++.+|++|.+++.. ++.++..|+++++.+   +..+.+.           ++++++|++.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~  316 (573)
T PRK05605        248 AAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDA-----------MKKHPPTWLPG  316 (573)
T ss_pred             HHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHhCCEEEEc
Confidence            76655443222 34789999999999999765 566789999998843   3333333           89999999999


Q ss_pred             chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCC
Q 006354          379 VPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLS  458 (649)
Q Consensus       379 ~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~  458 (649)
                      +|.+++.+.+......                                               ...++||.+++||++++
T Consensus       317 ~P~~~~~l~~~~~~~~-----------------------------------------------~~~~~lr~i~~gg~~l~  349 (573)
T PRK05605        317 VPPLYEKIAEAAEERG-----------------------------------------------VDLSGVRNAFSGAMALP  349 (573)
T ss_pred             hHHHHHHHHhCccccC-----------------------------------------------CCchhccEEEECCCcCC
Confidence            9999999876422100                                               01137999999999999


Q ss_pred             HHHHHHHHhhcCCccccccCcccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccc
Q 006354          459 ADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNV  537 (649)
Q Consensus       459 ~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v  537 (649)
                      +++.+.|.+.+++++++.||+||+++++...... ....+++|+|+|+++++|+|+++.+.  .++.|+.|||+|+|+.+
T Consensus       350 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~--~~~~g~~Gel~v~~~~~  427 (573)
T PRK05605        350 VSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDE--TMPDGEEGELLVRGPQV  427 (573)
T ss_pred             HHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCc--cCCCCCeeEEEEecCch
Confidence            9999999988899999999999998877655443 23457999999999999999655222  26789999999999999


Q ss_pred             cccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEe
Q 006354          538 TAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWR  617 (649)
Q Consensus       538 ~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g  617 (649)
                      +.||+++++.|.+.|   .+  |||+|||+|+++++|++++.||.||+||+ +|++|+|.+||+++.+|+.|. +++|++
T Consensus       428 ~~gy~~~~~~~~~~~---~~--g~~~TGD~~~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~-~~~v~~  500 (573)
T PRK05605        428 FKGYWNRPEETAKSF---LD--GWFRTGDVVVMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVE-DAAVVG  500 (573)
T ss_pred             hhhhcCChhHhhhcc---cC--CCcccCCEEEEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccc-eEEEEe
Confidence            999999999999988   55  69999999999999999999999999997 699999999999999999999 999999


Q ss_pred             cCCCCcccchhhh
Q 006354          618 NGPMKLASSTKIF  630 (649)
Q Consensus       618 ~~~~~~~~~~~~~  630 (649)
                      .++...++.+.++
T Consensus       501 ~~~~~~~~~~~~~  513 (573)
T PRK05605        501 LPREDGSEEVVAA  513 (573)
T ss_pred             eecccCCeEEEEE
Confidence            8877666555443

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=4.1e-58  Score=508.50  Aligned_cols=451  Identities=22%  Similarity=0.323  Sum_probs=372.7

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 006354           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (649)
Q Consensus        83 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (649)
                      +++++|++.++++|+++|+.+            +++           .+||+||.+++.++|+.|++.|+.+||+|++++
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~   57 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVH------------HDR-----------TLTYAALSERVLALASGLRGLGLARGERVAIYL   57 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            478999999999999999986            333           699999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCC
Q 006354          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG  242 (649)
Q Consensus       163 ~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~  242 (649)
                      +|+++++++++||+++|++++|+++.++.+++..+++.+++++++++.+....+.......+.+..++.+++......  
T Consensus        58 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  135 (515)
T TIGR03098        58 DKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASE--  135 (515)
T ss_pred             CCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccC--
Confidence            999999999999999999999999999999999999999999999998877766665555556666666654322110  


Q ss_pred             CCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 006354          243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA  322 (649)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~  322 (649)
                           .......|+++.......  .......+++++|+|||||||.||||.+||+++...+......+ .+.++|++++
T Consensus       136 -----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~l~  207 (515)
T TIGR03098       136 -----GGGESPSWPKLLALGDAD--PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-ENRPDDRLLA  207 (515)
T ss_pred             -----CccccccHHHhhcccccc--ccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-CCCcccEEEE
Confidence                 122334566655432211  22334568999999999999999999999999999988888777 8889999999


Q ss_pred             ccChHHHHHHHHHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcc
Q 006354          323 YLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (649)
Q Consensus       323 ~~pl~h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~  399 (649)
                      .+|++|.+++..++.++..|+++++.+   +..+.+.           ++++++|++.++|+++..+.+.....      
T Consensus       208 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~------  270 (515)
T TIGR03098       208 VLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDVLKA-----------LEKHGITGLAAVPPLWAQLAQLDWPE------  270 (515)
T ss_pred             ECchhhHhHHHHHHHHHHcCCEEEEcCCCCHHHHHHH-----------HHHcCCceEecChHHHHHHHhcccCC------
Confidence            999999999988889999999999843   3344444           89999999999999998876421000      


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccC
Q 006354          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG  478 (649)
Q Consensus       400 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG  478 (649)
                                                                ...+++|.+++||+++++++.+.+++.+ ++.+++.||
T Consensus       271 ------------------------------------------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG  308 (515)
T TIGR03098       271 ------------------------------------------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYG  308 (515)
T ss_pred             ------------------------------------------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeec
Confidence                                                      0114899999999999999999999887 788999999


Q ss_pred             cccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCC
Q 006354          479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER  557 (649)
Q Consensus       479 ~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~  557 (649)
                      +||++......... ..+.+++|+|+++++++|++ +++..   ++.|+.|||+++|+.++.||+++++.|.+.|.....
T Consensus       309 ~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~---~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~  384 (515)
T TIGR03098       309 LTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLR-EDGSE---CAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPP  384 (515)
T ss_pred             cccccceEecccccccCCCCCcceecCCCEEEEEC-CCCCC---CCCCCceEEEEcCchhhccccCCchhhhhhhhccCC
Confidence            99987655443322 34568999999999999998 55543   678899999999999999999999999888753210


Q ss_pred             -------cccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhh
Q 006354          558 -------GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIF  630 (649)
Q Consensus       558 -------~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~  630 (649)
                             +.+||+|||+|++++||++++.||.||+||+ +|++|+|.+||++|.+||.|. +|+|++..++..++.+.++
T Consensus       385 ~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~-~~~v~~~~~~~~g~~~~~~  462 (515)
T TIGR03098       385 RPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVA-EAVAFGVPDPTLGQAIVLV  462 (515)
T ss_pred             ccccccccccceeccceEEEcCCceEEEEeccccceec-CCEEeCHHHHHHHHhcCCCee-EEEEEeccCcccCceEEEE
Confidence                   1258999999999999999999999999997 599999999999999999999 9999999988777666554


Q ss_pred             h
Q 006354          631 Q  631 (649)
Q Consensus       631 ~  631 (649)
                      .
T Consensus       463 ~  463 (515)
T TIGR03098       463 V  463 (515)
T ss_pred             E
Confidence            3

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.3e-58  Score=510.01  Aligned_cols=453  Identities=26%  Similarity=0.357  Sum_probs=382.6

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..++.++|+++++.+|+++|+..            +++           .+||+||.++++++|+.|.+.|+++|++|++
T Consensus         5 ~~~l~~~l~~~~~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l   61 (521)
T PRK06187          5 PLTIGRILRHGARKHPDKEAVYF------------DGR-----------RTTYAELDERVNRLANALRALGVKKGDRVAV   61 (521)
T ss_pred             cCCHHHHHHHHHHHCCCceEEEe------------CCc-----------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            46999999999999999999986            333           4999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|+++++++++||+++|++++|+++.++.+++..+++.+++++++++.+..+.+.++....+.++.++.+++....  
T Consensus        62 ~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  139 (521)
T PRK06187         62 FDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA--  139 (521)
T ss_pred             ECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc--
Confidence            999999999999999999999999999999999999999999999999999888888887777777777776654321  


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  320 (649)
                            .......++.++....... .......++++++++|||||||.||+|.+||+++.+........+ .+.++|++
T Consensus       140 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~  211 (521)
T PRK06187        140 ------PLAPEVGEYEELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-KLSRDDVY  211 (521)
T ss_pred             ------ccccccccHHHHhhcCCcc-CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-CCCCCCEE
Confidence                  0012345566655443322 223445678999999999999999999999999999988888887 89999999


Q ss_pred             EEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcch
Q 006354          321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL  400 (649)
Q Consensus       321 l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~  400 (649)
                      ++.+|++|.+++...+.++..|+++++.+..   +     ...++..++++++|.++++|++++.+.......       
T Consensus       212 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~---~-----~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~-------  276 (521)
T PRK06187        212 LVIVPMFHVHAWGLPYLALMAGAKQVIPRRF---D-----PENLLDLIETERVTFFFAVPTIWQMLLKAPRAY-------  276 (521)
T ss_pred             EEeCCchHHhhHHHHHHHHHhCCEEEecCCC---C-----HHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------
Confidence            9999999999998877799999999985543   1     122344499999999999999999887643210       


Q ss_pred             hHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcc
Q 006354          401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT  480 (649)
Q Consensus       401 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~T  480 (649)
                                                              ....+++|.+++||+++++++.+.+.+.+++++++.||+|
T Consensus       277 ----------------------------------------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~t  316 (521)
T PRK06187        277 ----------------------------------------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMT  316 (521)
T ss_pred             ----------------------------------------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccC
Confidence                                                    0112489999999999999999999998899999999999


Q ss_pred             cccccccccCCCCC------CCCccCCCcccceEEEEecCCCCcccCCCC--CCccEEEEccccccccccCCCccchhhh
Q 006354          481 ETCAGSTFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKP--MPRGEIVVGGFNVTAGYFNNPGKTSEVY  552 (649)
Q Consensus       481 E~~~~~~~~~~~~~------~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~--g~~GEl~v~g~~v~~gY~~~~~~t~~~f  552 (649)
                      |++.++........      ..+++|+|++++.++|+| +++..   ++.  |+.|||+|+|+.++.||+++++.+.+.|
T Consensus       317 E~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~  392 (521)
T PRK06187        317 ETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDE---LPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI  392 (521)
T ss_pred             ccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCC---CCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh
Confidence            99877766544333      568999999999999999 44543   556  8999999999999999999999999988


Q ss_pred             ccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhh
Q 006354          553 KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQS  632 (649)
Q Consensus       553 ~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~  632 (649)
                         .+  +||+|||+|+++++|.+++.||.||+||+ +|.+|+|.+||++|.++++|. +++|++..+...++.+.++..
T Consensus       393 ---~~--~~~~tGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~v~  465 (521)
T PRK06187        393 ---DG--GWLHTGDVGYIDEDGYLYITDRIKDVIIS-GGENIYPRELEDALYGHPAVA-EVAVIGVPDEKWGERPVAVVV  465 (521)
T ss_pred             ---hC--CceeccceEEEcCCCCEEEeecccceEEc-CCeEECHHHHHHHHHhCCCce-EEEEEeccCCCcCceEEEEEE
Confidence               55  69999999999999999999999999998 599999999999999999999 999999888766655544433

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.4e-58  Score=513.74  Aligned_cols=462  Identities=23%  Similarity=0.344  Sum_probs=356.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHC-CCCCCCEE
Q 006354           80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRA  158 (649)
Q Consensus        80 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~-Gv~~gd~V  158 (649)
                      ...++.++|.++++++|+++|+..            +++           .+||+||.++++++|+.|.+. |+++||+|
T Consensus        22 ~~~~~~~~l~~~~~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V   78 (562)
T PRK12492         22 AYKSVVEVFERSCKKFADRPAFSN------------LGV-----------TLSYAELERHSAAFAAYLQQHTDLVPGDRI   78 (562)
T ss_pred             ccCcHHHHHHHHHHhCCCCeeEec------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            346899999999999999999975            333           699999999999999999985 99999999


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCC-C
Q 006354          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG-S  237 (649)
Q Consensus       159 ~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~-~  237 (649)
                      +++++|+++++++++||+++|++++|++|.++.+++.++++++++++++++....+.+..+.... .+..++...... .
T Consensus        79 ~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  157 (562)
T PRK12492         79 AVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-GIEYLIEAKMGDLL  157 (562)
T ss_pred             EEECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-CceEEEeechhhcc
Confidence            99999999999999999999999999999999999999999999999999876655554432221 112221111000 0


Q ss_pred             Ccc---------CCCCCC-C--CCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHH
Q 006354          238 EKD---------SGVSGG-I--SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA  305 (649)
Q Consensus       238 ~~~---------~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~  305 (649)
                      ...         ..+... +  ......+|+++..........+.....+++++|+|||||||.||||+++|+++...+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~  237 (562)
T PRK12492        158 PAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANML  237 (562)
T ss_pred             ccccchhcccccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHH
Confidence            000         000000 0  0012245666554433222223445678999999999999999999999999988776


Q ss_pred             HHHhhCCC--------CCC-CcEEEEccChHHHHHHHH-HHHHHHhCceEEeC-CcccccccchhhccCccccceeecce
Q 006354          306 AIKTLIPN--------PGR-SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVSVLKPT  374 (649)
Q Consensus       306 ~~~~~~~~--------~~~-~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~-~~~~l~~~~~~~~~~~~~~i~~~~~t  374 (649)
                      .....+..        +.. ++++++.+|++|.+++.. ++..+..|++.++. ++...        ..++..++++++|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t  309 (562)
T PRK12492        238 QVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDI--------PGFIKELGKWRFS  309 (562)
T ss_pred             HHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCH--------HHHHHHHHHhCCc
Confidence            65544311        222 357789999999999865 45567888876652 22211        1122338999999


Q ss_pred             EEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecC
Q 006354          375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG  454 (649)
Q Consensus       375 ~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG  454 (649)
                      ++.++|.++..+......                                               ++...+++|.+++||
T Consensus       310 ~~~~~p~~~~~l~~~~~~-----------------------------------------------~~~~~~~lr~~~~gG  342 (562)
T PRK12492        310 ALLGLNTLFVALMDHPGF-----------------------------------------------KDLDFSALKLTNSGG  342 (562)
T ss_pred             eeeCcHHHHHHHHhCcCc-----------------------------------------------ccccccceeEEEecc
Confidence            999999999887653110                                               001124899999999


Q ss_pred             CCCCHHHHHHHHhhcCCccccccCcccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEc
Q 006354          455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG  533 (649)
Q Consensus       455 ~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~  533 (649)
                      +++++++.+.|++.+++++++.||+||++.+++..... ....+++|+|+++++++|+| +++..   +++|+.|||+|+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~---~~~g~~Gel~v~  418 (562)
T PRK12492        343 TALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNE---LPLGERGELCIK  418 (562)
T ss_pred             ccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCC---CCCCCceEEEEe
Confidence            99999999999988899999999999998776655433 23457899999999999999 45543   678999999999


Q ss_pred             cccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccce
Q 006354          534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHI  613 (649)
Q Consensus       534 g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~  613 (649)
                      |+.++.|||++|+.|.+.|.  .+  +||+|||+|+++++|.++|.||.||+||++ |++|+|.+||++|.+||.|. ++
T Consensus       419 g~~~~~gY~~~~~~t~~~~~--~~--g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~-G~~i~~~eIE~~l~~~~~v~-~~  492 (562)
T PRK12492        419 GPQVMKGYWQQPEATAEALD--AE--GWFKTGDIAVIDPDGFVRIVDRKKDLIIVS-GFNVYPNEIEDVVMAHPKVA-NC  492 (562)
T ss_pred             CCccccccccCchhhhhccc--CC--CceecCcEEEECCCCeEEEecccCCeEEEC-CEEECHHHHHHHHHhCCCee-EE
Confidence            99999999999999999885  45  899999999999999999999999999985 99999999999999999999 99


Q ss_pred             EEEecCCCCcccchhhh
Q 006354          614 RLWRNGPMKLASSTKIF  630 (649)
Q Consensus       614 ~V~g~~~~~~~~~~~~~  630 (649)
                      +|++.++...++.+.++
T Consensus       493 ~v~~~~~~~~~~~~~~~  509 (562)
T PRK12492        493 AAIGVPDERSGEAVKLF  509 (562)
T ss_pred             EEEeccCCCCCceEEEE
Confidence            99999887766555444

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=4.5e-59  Score=516.29  Aligned_cols=427  Identities=22%  Similarity=0.314  Sum_probs=324.5

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 006354           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (649)
Q Consensus        83 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (649)
                      -+.++|+++++++|+++|+.+.           ++        +.++++||+||.++++++|++|.++  ++||+|+|++
T Consensus         3 ~~~~~l~~~~~~~~~~~a~~~~-----------~~--------~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~   61 (525)
T PRK05851          3 ELAAALSDAMTASGRDLVVLDR-----------ES--------GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVG   61 (525)
T ss_pred             hHHHHHHHHhcCCCCceEEeCC-----------CC--------CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEc
Confidence            3889999999999999999863           22        2346799999999999999999988  8999999999


Q ss_pred             cCCHHHHHHHHHHHhcCCEEEEecCC--------CCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecC
Q 006354          163 ETCVEWFIAFQGCFRQSITVVTIYSS--------LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN  234 (649)
Q Consensus       163 ~~~~~~vva~lA~~~~G~~~vpl~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~  234 (649)
                      +|++++++++|||+++|++++ ++|.        ...+++.+++++++++++|++....+.+......       +.+.+
T Consensus        62 ~~~~e~~~~~la~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~  133 (525)
T PRK05851         62 EPTVELVAAIQGAWLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHD  133 (525)
T ss_pred             CCCHHHHHHHHHHHHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------ccccc
Confidence            999999999999999999865 4432        2235666789999999999998766554432111       00000


Q ss_pred             CCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC
Q 006354          235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (649)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~  314 (649)
                                          +.......  .........++++|+|+|||||||.||||++||+++++.+......+ .+
T Consensus       134 --------------------~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~  190 (525)
T PRK05851        134 --------------------LATAAHTN--RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-GL  190 (525)
T ss_pred             --------------------cccccccc--ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CC
Confidence                                00000000  00011224678999999999999999999999999999998888887 78


Q ss_pred             C-CCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHH
Q 006354          315 G-RSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK  393 (649)
Q Consensus       315 ~-~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  393 (649)
                      . ++|++++.+|++|++++..++.+++.|+++++.+...+...    +..+...++++++|++..+|.++..+... ...
T Consensus       191 ~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~p~~~~~~l~~~-~~~  265 (525)
T PRK05851        191 DAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSAS----PFRWLSWLSDSRATLTAAPNFAYNLIGKY-ARR  265 (525)
T ss_pred             CCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHC----HHHHHHHHHHhCCeEEeCCcHHHHHHHHh-hcc
Confidence            7 89999999999999999888889999999998542211100    11122338899999875544444433221 100


Q ss_pred             HHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh---cC
Q 006354          394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC---MG  470 (649)
Q Consensus       394 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~---~~  470 (649)
                      .                                             .....++||.+++||+++++++.+.|.+.   +|
T Consensus       266 ~---------------------------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g  300 (525)
T PRK05851        266 V---------------------------------------------SDVDLGALRVALNGGEPVDCDGFERFATAMAPFG  300 (525)
T ss_pred             c---------------------------------------------cCCCHHHhheeEeccccCCHHHHHHHHHHHhhcC
Confidence            0                                             00011379999999999999998888764   34


Q ss_pred             C---ccccccCcccccccccccCCC---------------CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEE
Q 006354          471 A---PIGQAYGLTETCAGSTFSEWD---------------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV  532 (649)
Q Consensus       471 ~---~l~~~YG~TE~~~~~~~~~~~---------------~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v  532 (649)
                      .   .+++.||+||++..++.....               ..+.+++|+|+||++++|+|.+....   ++.|+.|||+|
T Consensus       301 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~---~~~g~~GEl~v  377 (525)
T PRK05851        301 FDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAG---VAGREIGEIEI  377 (525)
T ss_pred             CChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCcc---CCCCCeEEEEE
Confidence            4   599999999997665543211               12346899999999999998443322   67899999999


Q ss_pred             ccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccc
Q 006354          533 GGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHH  612 (649)
Q Consensus       533 ~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~  612 (649)
                      +|++++.|||++|+.+       .+  +||+|||+|+++ +|+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +
T Consensus       378 ~g~~~~~GY~~~~~~~-------~~--~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~-~  445 (525)
T PRK05851        378 RGASMMSGYLGQAPID-------PD--DWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVR-E  445 (525)
T ss_pred             ecCchhhccccCCccC-------CC--CceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcc-c
Confidence            9999999999998643       34  899999999996 8999999999999998 599999999999999999999 9


Q ss_pred             eEEEecCCCCcccc
Q 006354          613 IRLWRNGPMKLASS  626 (649)
Q Consensus       613 ~~V~g~~~~~~~~~  626 (649)
                      |+|++.+++..++.
T Consensus       446 ~~vv~~~~~~~~~~  459 (525)
T PRK05851        446 GAVVAVGTGEGSAR  459 (525)
T ss_pred             ceEEEEEecCCCCc
Confidence            99999887766543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.6e-58  Score=558.95  Aligned_cols=455  Identities=24%  Similarity=0.323  Sum_probs=366.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 006354           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (649)
Q Consensus        79 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (649)
                      +...++.++|+++++++|+++|+...           +++           .+||+||.++++++|+.|++ ++++||+|
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~-----------~~~-----------~~Ty~el~~~~~~~a~~L~~-~~~~g~~V  668 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADS-----------TGG-----------ELSYGKALTGALALARLLKR-ELKDEENV  668 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcC-----------CCC-----------cCcHHHHHHHHHHHHHHHHH-hCCCCCeE
Confidence            44579999999999999999999742           232           59999999999999999987 48999999


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhh--ccCCCccEEEEecCCC
Q 006354          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS--SSLKTIKNVIYFENDG  236 (649)
Q Consensus       159 ~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~--~~~~~~~~ii~~~~~~  236 (649)
                      +++++|+++++++++||+++|++++|++|.++++++.++++++++++++++++..+.+....  ...+....++..++..
T Consensus       669 ~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  748 (1146)
T PRK08633        669 GILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK  748 (1146)
T ss_pred             EEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhc
Confidence            99999999999999999999999999999999999999999999999999988776654311  1122233444443321


Q ss_pred             CCccCCCCCCCCCceEeehHHHHhcCCCC-----CCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC
Q 006354          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRS-----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI  311 (649)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~  311 (649)
                      ...          .....+.+........     ........++|+++|+|||||||.||||++||+++.+.+......+
T Consensus       749 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~  818 (1146)
T PRK08633        749 AKI----------SKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF  818 (1146)
T ss_pred             ccc----------chhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc
Confidence            100          0001111111110000     0001345679999999999999999999999999999998888888


Q ss_pred             CCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeC----CcccccccchhhccCccccceeecceEEEechHHHHHH
Q 006354          312 PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV  386 (649)
Q Consensus       312 ~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l  386 (649)
                       ++.++|++++.+|++|.+++.. .+.++..|+++++.    ++..+.+.           ++++++|++.++|++++.+
T Consensus       819 -~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l  886 (1146)
T PRK08633        819 -NLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKL-----------VAKHRATILLGTPTFLRLY  886 (1146)
T ss_pred             -CCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHH-----------HHHcCCeEEEecHHHHHHH
Confidence             8889999999999999999876 67889999999883    22333333           9999999999999999887


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHH
Q 006354          387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN  466 (649)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~  466 (649)
                      .+....                                               ++...+++|.+++||+++++++.+.++
T Consensus       887 ~~~~~~-----------------------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~  919 (1146)
T PRK08633        887 LRNKKL-----------------------------------------------HPLMFASLRLVVAGAEKLKPEVADAFE  919 (1146)
T ss_pred             Hhcccc-----------------------------------------------CcccCCCeeeEEEcCCcCCHHHHHHHH
Confidence            653110                                               011124899999999999999999999


Q ss_pred             hhcCCccccccCcccccccccccCCC----------CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcccc
Q 006354          467 ICMGAPIGQAYGLTETCAGSTFSEWD----------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFN  536 (649)
Q Consensus       467 ~~~~~~l~~~YG~TE~~~~~~~~~~~----------~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~  536 (649)
                      +.+|+++++.||+||++.+++.....          ....+++|+|+||++++|+|++++..   +++|+.|||+|+|++
T Consensus       920 ~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~---~~~g~~Gel~v~g~~  996 (1146)
T PRK08633        920 EKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEE---LPPGEDGLILIGGPQ  996 (1146)
T ss_pred             HHhCCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCcc---CCCCCceEEEEcCCC
Confidence            98999999999999998776544321          12457899999999999999766654   789999999999999


Q ss_pred             ccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCc--ccccceE
Q 006354          537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLP--LLFHHIR  614 (649)
Q Consensus       537 v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p--~V~~~~~  614 (649)
                      ++.||+++|+.|++.|.. .++.+||+|||+|++|+||++++.||.||+||+ +|++|+|.|||++|.+||  .+. +++
T Consensus       997 ~~~gY~~~~~~t~~~~~~-~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~-~~~ 1073 (1146)
T PRK08633        997 VMKGYLGDPEKTAEVIKD-IDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEV-VFA 1073 (1146)
T ss_pred             ccccccCCccchHHHhhc-CCCCCeEECCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCc-eEE
Confidence            999999999999998852 234589999999999999999999999999997 599999999999999999  566 799


Q ss_pred             EEecCCCCcccchhhhh
Q 006354          615 LWRNGPMKLASSTKIFQ  631 (649)
Q Consensus       615 V~g~~~~~~~~~~~~~~  631 (649)
                      |++.+++..|+.+.++.
T Consensus      1074 v~~~~~~~~g~~~~~~v 1090 (1146)
T PRK08633       1074 VTAVPDEKKGEKLVVLH 1090 (1146)
T ss_pred             EEeccCCCCCcEEEEEE
Confidence            99999998887665544

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-58  Score=509.59  Aligned_cols=450  Identities=21%  Similarity=0.279  Sum_probs=368.0

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|..+++++|+++|+.+            +++           .+||+||.+++.++|..|.+.|+++||+|++
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l   66 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVF------------GDR-----------SWTYAELDAAVNRVAAALLDLGLKKGDRVAA   66 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            46899999999999999999986            333           6999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+....+.+....... ..+.......    
T Consensus        67 ~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----  141 (523)
T PRK08316         67 LGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPV-DTLILSLVLG----  141 (523)
T ss_pred             ECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCc-cceeeeeccc----
Confidence            99999999999999999999999999999999999999999999999999887777655433331 1111111100    


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  320 (649)
                          ..........++++....... ........+++++|+|||||||.||+|.+||+++++.+......+ .+.++|++
T Consensus       142 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~  215 (523)
T PRK08316        142 ----GREAPGGWLDFADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-DMSADDIP  215 (523)
T ss_pred             ----ccccccchhhHHHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCCceE
Confidence                001112334555554433222 123456778999999999999999999999999999988887777 89999999


Q ss_pred             EEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcc
Q 006354          321 LAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (649)
Q Consensus       321 l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~  399 (649)
                      ++.+|++|..++.. ++.++..|+++++.+...        ...++..++++++|++.++|.++..+......       
T Consensus       216 ~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------  280 (523)
T PRK08316        216 LHALPLYHCAQLDVFLGPYLYVGATNVILDAPD--------PELILRTIEAERITSFFAPPTVWISLLRHPDF-------  280 (523)
T ss_pred             EEccCCchhhhHHHHHHHHHhcCceEEEecCCC--------HHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc-------
Confidence            99999999998865 455688999999843221        11223339999999999999999887653110       


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccC
Q 006354          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG  478 (649)
Q Consensus       400 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG  478 (649)
                                                              +....+++|.+++||++++.++.+.+++.+ ++++++.||
T Consensus       281 ----------------------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG  320 (523)
T PRK08316        281 ----------------------------------------DTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYG  320 (523)
T ss_pred             ----------------------------------------ccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeec
Confidence                                                    001124799999999999999999999887 789999999


Q ss_pred             cccccccccccCCCC--CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC
Q 006354          479 LTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE  556 (649)
Q Consensus       479 ~TE~~~~~~~~~~~~--~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~  556 (649)
                      +||++.+++.....+  ...+++|+|+++++++|+| +++..   ++.|+.|||+++|+.++.||+++++.+++.|   .
T Consensus       321 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~---~  393 (523)
T PRK08316        321 QTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGND---VAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF---R  393 (523)
T ss_pred             ccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCC---CCCCCcceEEEECCchhhhhcCCHHHHHHHh---h
Confidence            999988776654322  3458999999999999999 55543   6789999999999999999999999999998   5


Q ss_pred             CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhh
Q 006354          557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIF  630 (649)
Q Consensus       557 ~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~  630 (649)
                      +  +||+|||+|++++||.++++||.||+||+ +|++|+|.+||+.|.++|+|. +++|++.+++..++.+.++
T Consensus       394 ~--~~~~TGDl~~~~~~g~l~i~gR~~~~i~~-~G~~i~~~~iE~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~  463 (523)
T PRK08316        394 G--GWFHSGDLGVMDEEGYITVVDRKKDMIKT-GGENVASREVEEALYTHPAVA-EVAVIGLPDPKWIEAVTAV  463 (523)
T ss_pred             C--CCeeccceEEEcCCceEEEecccccEEEe-CCeEECHHHHHHHHHhCCChh-eEeEecccCcccCCeEEEE
Confidence            6  89999999999999999999999999998 599999999999999999999 9999999988876555443

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=7.5e-58  Score=504.98  Aligned_cols=436  Identities=23%  Similarity=0.364  Sum_probs=359.1

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .++.+++..++ ++|+++|+...           +++           .+||+||.++++++|++|+++|+++||+|+++
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~~-----------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~   59 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIETP-----------DGL-----------RYTYGDLDAASARLANLLVALGVKPGDRVAVQ   59 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEeC-----------CCC-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            58999999999 99999999752           343           69999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++++++++||+++|++++|+++.++++++..+++.+++++++++......+....... ....++.++....    
T Consensus        60 ~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----  134 (504)
T PRK07514         60 VEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADGT----  134 (504)
T ss_pred             CCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCCc----
Confidence            99999999999999999999999999999999999999999999999988777666554332 2232333332211    


Q ss_pred             CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 006354          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  321 (649)
                                 ..+.+..... ..........++++++|+|||||||.||+|++||+++...+......+ .+.++|+++
T Consensus       135 -----------~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l  201 (504)
T PRK07514        135 -----------GSLLEAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-RFTPDDVLI  201 (504)
T ss_pred             -----------ccHHHhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCccEEE
Confidence                       1111111111 111123345678999999999999999999999999999988887777 888999999


Q ss_pred             EccChHHHHHHHH-HHHHHHhCceEEeCCc---ccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354          322 AYLPLAHVLELAA-ESIMLCAGCAIGYGST---LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (649)
Q Consensus       322 ~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~---~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~  397 (649)
                      +.+|++|..++.. ++.++..|+++++.+.   ..+.+.           +  .++|++.++|.++..+......     
T Consensus       202 ~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i--~~~t~~~~~P~~~~~l~~~~~~-----  263 (504)
T PRK07514        202 HALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLAL-----------M--PRATVMMGVPTFYTRLLQEPRL-----  263 (504)
T ss_pred             EecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHH-----------H--HhheeeecHHHHHHHHHcCCCC-----
Confidence            9999999999765 6678999999998543   223222           5  4799999999999888653100     


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcccccc
Q 006354          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAY  477 (649)
Q Consensus       398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~Y  477 (649)
                                                                .....+++|.+++||+++++++.+.|+..+++++++.|
T Consensus       264 ------------------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~Y  301 (504)
T PRK07514        264 ------------------------------------------TREAAAHMRLFISGSAPLLAETHREFQERTGHAILERY  301 (504)
T ss_pred             ------------------------------------------CcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeec
Confidence                                                      00112489999999999999999999999999999999


Q ss_pred             CcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCC
Q 006354          478 GLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER  557 (649)
Q Consensus       478 G~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~  557 (649)
                      |+||++...+..........++|.|+++++++|+|++++..   ++.|+.|||+|+|++++.||+++++.+++.|.  .+
T Consensus       302 G~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~---~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~--~~  376 (504)
T PRK07514        302 GMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAE---LPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFR--AD  376 (504)
T ss_pred             ccccccccccCCccccccCcccccCCCCcEEEEEECCCCCC---CCCCCceEEEEecCCccccccCCchhhhhhcc--cC
Confidence            99999876554333334457899999999999999666654   67899999999999999999999999999996  45


Q ss_pred             cccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       558 ~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                        +||+|||+|+++++|++++.||.||+||+ +|++|+|.+||+++.++++|. +++|++.++...++..
T Consensus       377 --~~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~-~~~v~~~~~~~~~~~~  442 (504)
T PRK07514        377 --GFFITGDLGKIDERGYVHIVGRGKDLIIS-GGYNVYPKEVEGEIDELPGVV-ESAVIGVPHPDFGEGV  442 (504)
T ss_pred             --CCeeecceEEEcCCccEEEeccccceEEe-CCeEECHHHHHHHHHhCCCee-EEEEEeCCCCCcCceE
Confidence              89999999999999999999999999997 599999999999999999999 9999999887665443

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.5e-58  Score=508.37  Aligned_cols=455  Identities=20%  Similarity=0.248  Sum_probs=360.7

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .++.++|+.+++++|++.++.++.          +|         +++.+||.||.++++++|++|.+.|+++||+|+++
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~----------~~---------~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~   70 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRRV----------EG---------DIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTL   70 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEeec----------cC---------cceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            579999999999999998887532          22         23469999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++++++++||+++|++++|++|.++++++.++++.+++++++++.+..+.+.++....+.++.++...+.....  
T Consensus        71 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  148 (539)
T PRK07008         71 AWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLP--  148 (539)
T ss_pred             cCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccc--
Confidence            999999999999999999999999999999999999999999999999888777766665566666666554432111  


Q ss_pred             CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHH--HHhhCCCCCCCcE
Q 006354          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA--IKTLIPNPGRSDV  319 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~~d~  319 (649)
                         .  ......+++++....... .......++++++++|||||||.||||++||++++.....  ....+ .+.++|+
T Consensus       149 ---~--~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d~  221 (539)
T PRK07008        149 ---A--GSTPLLCYETLVGAQDGD-YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-GLSARDA  221 (539)
T ss_pred             ---c--CCcccccHHHHhcccCCC-cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-CCCCCce
Confidence               0  113356677765433221 1123456788999999999999999999999998754332  23345 7888999


Q ss_pred             EEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcc
Q 006354          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~  399 (649)
                      ++..+|++|..++...+.++..|+++++.++..  +     ...++..++++++|++.++|+++..+.+......     
T Consensus       222 ~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~--~-----~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~-----  289 (539)
T PRK07008        222 VLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDL--D-----GKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG-----  289 (539)
T ss_pred             EEecCchHHhhhHHHHHHHHhcCceEEEecCCc--C-----HHHHHHHHHHcCCEEEEechHHHHHHHhcccccC-----
Confidence            999999999888776778899999999853321  1     1122333999999999999999998876321100     


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCc
Q 006354          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL  479 (649)
Q Consensus       400 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~  479 (649)
                                                                ...+++|.+++||+++++++.+.+.+.+++++++.||+
T Consensus       290 ------------------------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~  327 (539)
T PRK07008        290 ------------------------------------------LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGM  327 (539)
T ss_pred             ------------------------------------------CCcccceEEEEcCCCCCHHHHHHHHHHhCCceeccccc
Confidence                                                      01148999999999999999999988889999999999


Q ss_pred             ccccccccccCCCC-----------CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccc
Q 006354          480 TETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT  548 (649)
Q Consensus       480 TE~~~~~~~~~~~~-----------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t  548 (649)
                      ||++..++......           ....++|+|+|+++++|+| +++...+ ...++.|||+++|+.++.||+++++  
T Consensus       328 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~-~~~~~~Gei~v~g~~~~~gy~~~~~--  403 (539)
T PRK07008        328 TEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELP-WDGKAFGDLQVRGPWVIDRYFRGDA--  403 (539)
T ss_pred             ccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccC-CCCCcceEEEEeCCccchhhcCChh--
Confidence            99987654432110           1136799999999999999 4554321 1223579999999999999999983  


Q ss_pred             hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354          549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~  628 (649)
                       ..+   .+  |||+|||+|++++||++++.||.||+||+ +|++|+|.+||++|.+||.|. +++|++.++...++.+.
T Consensus       404 -~~~---~~--g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~-~~~v~~~~~~~~~~~~~  475 (539)
T PRK07008        404 -SPL---VD--GWFPTGDVATIDADGFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVA-EAACIACAHPKWDERPL  475 (539)
T ss_pred             -hhh---cC--CCcccCceEEEcCCCcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCcee-EEEEEecCCchhccceE
Confidence             344   34  89999999999999999999999999996 599999999999999999999 99999998877665544


Q ss_pred             hh
Q 006354          629 IF  630 (649)
Q Consensus       629 ~~  630 (649)
                      ++
T Consensus       476 ~~  477 (539)
T PRK07008        476 LV  477 (539)
T ss_pred             EE
Confidence            43

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-57  Score=510.18  Aligned_cols=446  Identities=24%  Similarity=0.331  Sum_probs=357.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .|+.++|++.++++|+++|+++.+          ++           +.+||+||.++++++|++|.+.|+++||+|+|+
T Consensus        18 ~~l~~~l~~~~~~~p~~~a~~~~~----------~~-----------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~   76 (558)
T PRK12583         18 QTIGDAFDATVARFPDREALVVRH----------QA-----------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIW   76 (558)
T ss_pred             CcHHHHHHHHHHHCCCCeEEEecC----------CC-----------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            589999999999999999998742          22           369999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH-----HHHHHhhc-------------cC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSS-------------SL  223 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~-------------~~  223 (649)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++....     ..+.+...             ..
T Consensus        77 ~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (558)
T PRK12583         77 APNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERL  156 (558)
T ss_pred             CCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccC
Confidence            9999999999999999999999999999999999999999999999976432     22222111             12


Q ss_pred             CCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCC-----CCCCCCCCCCCeEEEEeecCCCCCcceEEechH
Q 006354          224 KTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRS-----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG  298 (649)
Q Consensus       224 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~  298 (649)
                      +.++.++..+....            .....|+++.......     ........++++++++|||||||.||||.+||+
T Consensus       157 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~  224 (558)
T PRK12583        157 PELRGVVSLAPAPP------------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHH  224 (558)
T ss_pred             CcceEEEEecCCCC------------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHH
Confidence            23333343322111            1123344443322111     011133457889999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeC----CcccccccchhhccCccccceeecc
Q 006354          299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKP  373 (649)
Q Consensus       299 ~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~----~~~~l~~~~~~~~~~~~~~i~~~~~  373 (649)
                      ++.+.+......+ ++..+|++++.+|++|.++... .+.++..|+++++.    ++..+++.           ++++++
T Consensus       225 ~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~-----------i~~~~~  292 (558)
T PRK12583        225 NILNNGYFVAESL-GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQA-----------VEEERC  292 (558)
T ss_pred             HHHHHHHHHHHHh-CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHH-----------HHHcCC
Confidence            9999988888877 8899999999999999999766 66779999999862    33333333           999999


Q ss_pred             eEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEec
Q 006354          374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICG  453 (649)
Q Consensus       374 t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~g  453 (649)
                      |+++++|+++..+.......                                               ....+++|.+++|
T Consensus       293 t~l~~~P~~~~~l~~~~~~~-----------------------------------------------~~~~~~lr~i~~~  325 (558)
T PRK12583        293 TALYGVPTMFIAELDHPQRG-----------------------------------------------NFDLSSLRTGIMA  325 (558)
T ss_pred             eEEeccHHHHHHHHcccccc-----------------------------------------------CCCchhheEEEec
Confidence            99999999987765421100                                               0011489999999


Q ss_pred             CCCCCHHHHHHHHhhcC-CccccccCcccccccccccCCC---CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccE
Q 006354          454 GAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWD---DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE  529 (649)
Q Consensus       454 G~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~~~~~~---~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GE  529 (649)
                      |+++++++.+.+.+.++ ..+++.||+||++.+++.....   ..+..++|+|+|++.++|+|++ +..   ++.|+.||
T Consensus       326 G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~---~~~g~~Ge  401 (558)
T PRK12583        326 GAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GAT---VPRGEIGE  401 (558)
T ss_pred             CCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CCC---CCCCCeeE
Confidence            99999999999888775 5799999999998877654332   2245799999999999999954 443   78899999


Q ss_pred             EEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCccc
Q 006354          530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLL  609 (649)
Q Consensus       530 l~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V  609 (649)
                      |+|+|+.++.||+++++.+.+.|.  .+  +||+|||+|++++||++++.||.||+||+ +|++|+|.+||++|.+||+|
T Consensus       402 l~v~g~~~~~gy~~~~~~~~~~~~--~~--~~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v  476 (558)
T PRK12583        402 LCTRGYSVMKGYWNNPEATAESID--ED--GWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAV  476 (558)
T ss_pred             EEEEeCccchhhcCChHHHHhhcC--CC--CCeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCe
Confidence            999999999999999999988875  45  89999999999999999999999999997 59999999999999999999


Q ss_pred             ccceEEEecCCCCcccchhh
Q 006354          610 FHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       610 ~~~~~V~g~~~~~~~~~~~~  629 (649)
                      . +++|++..+...++...+
T Consensus       477 ~-~~~v~~~~~~~~~~~~~~  495 (558)
T PRK12583        477 A-DVQVFGVPDEKYGEEIVA  495 (558)
T ss_pred             e-EEEEEeeecCCCCcEEEE
Confidence            9 999999887765544333

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-57  Score=506.09  Aligned_cols=445  Identities=20%  Similarity=0.256  Sum_probs=351.1

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 006354           78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR  157 (649)
Q Consensus        78 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~  157 (649)
                      .++..++.++|.++++++|+++|+..            +++           .+||+||.+++.++|+.|.+.|+++||+
T Consensus         6 ~~~~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~~L~~~~~~~a~~L~~~g~~~g~~   62 (540)
T PRK06164          6 APRADTLASLLDAHARARPDAVALID------------EDR-----------PLSRAELRALVDRLAAWLAAQGVRRGDR   62 (540)
T ss_pred             ccCCCCHHHHHHHHHHhCCCCeEEec------------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            35557999999999999999999974            332           5999999999999999999999999999


Q ss_pred             EEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH-----HHHHHhhc-cCCCccEEEE
Q 006354          158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSS-SLKTIKNVIY  231 (649)
Q Consensus       158 V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~-~~~~~~~ii~  231 (649)
                      |+++++|+++++++++||+++|++++|+++..+.+++.+++++++++++|++.+..     +.+..... ..+.++.++.
T Consensus        63 V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (540)
T PRK06164         63 VAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAV  142 (540)
T ss_pred             EEEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEE
Confidence            99999999999999999999999999999999999999999999999999987642     22222221 1234555555


Q ss_pred             ecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCC---CCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHH
Q 006354          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPV---DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK  308 (649)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~  308 (649)
                      ++........        .....+.++.........   ......++++++++|||||||.||||++||+++.+.+....
T Consensus       143 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~  214 (540)
T PRK06164        143 VDDAADATPA--------PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIA  214 (540)
T ss_pred             eccCcccCCC--------CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHH
Confidence            5421110000        000001111110000000   01233568899999999999999999999999999999888


Q ss_pred             hhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354          309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (649)
Q Consensus       309 ~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~  388 (649)
                      ..+ ++..++++++.+|++|.+++..++.++..|+++++.+....        ..++..++++++|+++++|.++..+.+
T Consensus       215 ~~~-~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~--------~~~~~~l~~~~~t~~~~~p~~l~~l~~  285 (540)
T PRK06164        215 RAY-GYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFDA--------ARTARALRRHRVTHTFGNDEMLRRILD  285 (540)
T ss_pred             Hhc-CCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCCH--------HHHHHHHHHhCCeeecCCHHHHHHHHH
Confidence            888 88899999999999999999888899999999988433211        112333999999999999999998876


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecC-CCCCHHHHHHHHh
Q 006354          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG-APLSADSQRFINI  467 (649)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG-~~l~~~~~~~~~~  467 (649)
                      ....                                                ....+++|.+.++| .+...++.+++..
T Consensus       286 ~~~~------------------------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~  317 (540)
T PRK06164        286 TAGE------------------------------------------------RADFPSARLFGFASFAPALGELAALARA  317 (540)
T ss_pred             hhcc------------------------------------------------cCCCcceeeeeeccCCcchHHHHHHHhh
Confidence            4100                                                00114788877665 5566667777766


Q ss_pred             hcCCccccccCcccccccccccCCCC---CCCCccCCCc-ccceEEEEecCCCCcccCCCCCCccEEEEccccccccccC
Q 006354          468 CMGAPIGQAYGLTETCAGSTFSEWDD---PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN  543 (649)
Q Consensus       468 ~~~~~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~  543 (649)
                      . ++++++.||+||++.+++......   ......|.|+ +++.++|+|++++..   ++.|+.|||||+|++++.||++
T Consensus       318 ~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~---~~~g~~Gel~v~g~~~~~gY~~  393 (540)
T PRK06164        318 R-GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGAL---LPDGESGEIEIRAPSLMRGYLD  393 (540)
T ss_pred             c-CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcC---CCCCCeeEEEEecccccccccC
Confidence            5 899999999999988766554322   2235678875 899999999766654   6789999999999999999999


Q ss_pred             CCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCC
Q 006354          544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGP  620 (649)
Q Consensus       544 ~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~  620 (649)
                      +|+.|++.|.  .+  +||+|||+|++++||.+++.||.||+||+ +|++|+|.+||++|.+||+|. +++|++...
T Consensus       394 ~~~~t~~~~~--~~--~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~-~~~v~~~~~  464 (540)
T PRK06164        394 NPDATARALT--DD--GYFRTGDLGYTRGDGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVA-AAQVVGATR  464 (540)
T ss_pred             Cchhhhhccc--CC--CceecCCeEEEcCCceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCce-eEEEEecCC
Confidence            9999999986  56  89999999999999999999999999998 599999999999999999999 999999763

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-57  Score=500.47  Aligned_cols=432  Identities=22%  Similarity=0.273  Sum_probs=352.1

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .++.++|+++++++|+++|+.+            +++           .+||.||.+++.++|.+|.+.|+++|++|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~   58 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVY------------RDQ-----------EISYAEFHQRILQAAGMLHARGIGQGDVVALL   58 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEE------------CCc-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            5788999999999999999986            444           69999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+.......       ....+.++....    
T Consensus        59 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~----  127 (497)
T PRK06145         59 MKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-------ETPKIVIDAAAQ----  127 (497)
T ss_pred             CCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-------ccceEEecCccc----
Confidence            999999999999999999999999999999999999999999999998776443210       011222221100    


Q ss_pred             CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 006354          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  321 (649)
                                 ..+..+.. ............++++++++|||||||.||+|++||+++...+......+ .+..+++++
T Consensus       128 -----------~~~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~~  194 (497)
T PRK06145        128 -----------ADSRRLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-GLTASERLL  194 (497)
T ss_pred             -----------chhHHHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-CCCCCcEEE
Confidence                       00111111 11111112345678999999999999999999999999987776666666 888999999


Q ss_pred             EccChHHHHHHHH-HHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354          322 AYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (649)
Q Consensus       322 ~~~pl~h~~~~~~-~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~  397 (649)
                      ..+|++|.+++.. .+.++..|+++++.   ++..+.+.           ++++++|++.++|+++..++......    
T Consensus       195 ~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~ll~~~~~~----  259 (497)
T PRK06145        195 VVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAA-----------IERHRLTCAWMAPVMLSRVLTVPDRD----  259 (497)
T ss_pred             EecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHH-----------HHHhCCeEEEehHHHHHHHHcCCCcc----
Confidence            9999999988865 56779999999883   33444444           99999999999999998887531100    


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccc
Q 006354          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA  476 (649)
Q Consensus       398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~  476 (649)
                                                                 ....+++|.+++||+++++++.+.+.+.+ +.++++.
T Consensus       260 -------------------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~  296 (497)
T PRK06145        260 -------------------------------------------RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDA  296 (497)
T ss_pred             -------------------------------------------ccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEe
Confidence                                                       00113799999999999999999998887 6889999


Q ss_pred             cCcccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhcc
Q 006354          477 YGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV  554 (649)
Q Consensus       477 YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~  554 (649)
                      ||+||++..++.....  ....+++|+|+++++++++| +++..   +++|+.|||+++|++++.||+++++.|++.|  
T Consensus       297 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~--  370 (497)
T PRK06145        297 YGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRW---LPPNMKGEICMRGPKVTKGYWKDPEKTAEAF--  370 (497)
T ss_pred             ecCcccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCC---CCCCCceEEEEECcchhhhhcCChHHHHHHH--
Confidence            9999998866544322  22457899999999999998 44443   6788999999999999999999999999998  


Q ss_pred             CCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354          555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       555 ~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                       .+  +||+|||+|++++||+++++||.||+||+ +|++|+|.+||++|.++|+|. +++|++..++..++...+
T Consensus       371 -~~--~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~-~~~v~~~~~~~~~~~~~~  440 (497)
T PRK06145        371 -YG--DWFRSGDVGYLDEEGFLYLTDRKKDMIIS-GGENIASSEVERVIYELPEVA-EAAVIGVHDDRWGERITA  440 (497)
T ss_pred             -hC--CCeeccceEEEcCCCcEEEeccccceEEe-CCeEECHHHHHHHHHhCCCee-EEEEEecCCCccCceEEE
Confidence             55  79999999999999999999999999997 599999999999999999999 999999988876654433

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=3.9e-57  Score=499.59  Aligned_cols=442  Identities=21%  Similarity=0.267  Sum_probs=363.4

Q ss_pred             CCHHHHHHHH-HHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           82 STMAALFEQS-CKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        82 ~tl~~~~~~~-a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      +...++++++ ++.+||++|+..            ++.           .+||.||.++++++|++|.+.|+++|++|++
T Consensus         4 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l   60 (508)
T TIGR02262         4 NAAEDLLDRNVVEGRGGKTAFID------------DIS-----------SLSYGELEAQVRRLGAALRRLGVKREERVLL   60 (508)
T ss_pred             hHHHHHHHHHHhcccCCceEEEe------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            4667788877 677999999975            333           6999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|+++|+++++||+++|++++|+++.++.+++.++++.+++++++++.+..+.+.+.....+..+.++..+....   
T Consensus        61 ~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  137 (508)
T TIGR02262        61 LMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEA---  137 (508)
T ss_pred             ECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCc---
Confidence            99999999999999999999999999999999999999999999999999888877777666677777776543211   


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHH-HHhhCCCCCCCcE
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTLIPNPGRSDV  319 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~~d~  319 (649)
                                ....+.++...... ...+....++++++|+|||||||.||||++||+++...+.. ....+ +++.+|+
T Consensus       138 ----------~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~~d~  205 (508)
T TIGR02262       138 ----------GEVQLAELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-GIREDDV  205 (508)
T ss_pred             ----------ccccHHHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-CCCCCCE
Confidence                      11234443332211 11223445789999999999999999999999999887766 34455 8889999


Q ss_pred             EEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhc
Q 006354          320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~  398 (649)
                      +++.+|++|.+++.. ++.++..|+++++.+...  +     ...++..++++++|.+.++|.++..+......      
T Consensus       206 ~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~--~-----~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~------  272 (508)
T TIGR02262       206 VFSAAKLFFAYGLGNALTFPMSVGATTVLMGERP--T-----PDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL------  272 (508)
T ss_pred             EEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCC--C-----HHHHHHHHHHHCCcEEecchHHHHHHhcCccc------
Confidence            999999999999865 566799999998843211  0     11233339999999999999988776542100      


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccC
Q 006354          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (649)
Q Consensus       399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (649)
                                                               +....+++|.+++||+++++++.+.|.+.+++++++.||
T Consensus       273 -----------------------------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG  311 (508)
T TIGR02262       273 -----------------------------------------PAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIG  311 (508)
T ss_pred             -----------------------------------------cccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCcc
Confidence                                                     000124799999999999999999999999999999999


Q ss_pred             cccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCc
Q 006354          479 LTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERG  558 (649)
Q Consensus       479 ~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~  558 (649)
                      +||++.+++.....+...+++|+|++|++++|+| +++..   +++|..|||+|+|+.++.||+++++.+++.|   .+ 
T Consensus       312 ~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~---~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~---~~-  383 (508)
T TIGR02262       312 STEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVG-DGGQD---VAAGEPGELLISGPSSATMYWNNRAKTRDTF---QG-  383 (508)
T ss_pred             ccccCceeecCCccCCCCCCcCCCCCCcEEEEEC-CCCCC---CCCCCeeEEEEecCccccccCCCHHHhHhhh---hc-
Confidence            9999876655444444567899999999999999 66544   6789999999999999999999999999988   55 


Q ss_pred             ccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccc
Q 006354          559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASS  626 (649)
Q Consensus       559 ~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~  626 (649)
                       +||+|||++++++||.++++||.||+||+. |++|+|.+||++|.++|+|. ++++++..+...++.
T Consensus       384 -~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~-G~~v~~~~ie~~l~~~~~v~-~~~~~~~~~~~~~~~  448 (508)
T TIGR02262       384 -EWTRSGDKYVRNDDGSYTYAGRTDDMLKVS-GIYVSPFEIESALIQHPAVL-EAAVVGVEDEDGLIK  448 (508)
T ss_pred             -CceeccceEEEcCCccEEEeccccceeeeC-CEEECHHHHHHHHHhCCCee-EEEEEeccccCCCce
Confidence             899999999999999999999999999985 99999999999999999999 999999876655443

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-57  Score=502.02  Aligned_cols=431  Identities=19%  Similarity=0.252  Sum_probs=347.6

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHC-CCCCCCEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAA  159 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~-Gv~~gd~V~  159 (649)
                      ..++.++|++++.  ++++|+.+            +++           .+||+||.++++++|++|+++ |++++++|+
T Consensus         4 ~~~~~~~l~~~a~--~~~~a~~~------------~~~-----------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~   58 (529)
T PRK07867          4 APTVAELLLPLAE--DDDRGLYF------------EDS-----------FTSWREHIRGSAARAAALRARLDPTRPPHVG   58 (529)
T ss_pred             cccHHHHHHHhcc--cCCceEEE------------CCc-----------EEeHHHHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence            4589999988875  78999876            444           699999999999999999997 899999999


Q ss_pred             EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCc
Q 006354          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK  239 (649)
Q Consensus       160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~  239 (649)
                      ++++|+++++++++||+++|++++|+++.++++++.+++++++++++|++++....+..+.   +.+. ++.++.     
T Consensus        59 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~-~~~~~~-----  129 (529)
T PRK07867         59 VLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGVR-VINVDS-----  129 (529)
T ss_pred             EECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCce-EEEecc-----
Confidence            9999999999999999999999999999999999999999999999999988776655432   1222 121111     


Q ss_pred             cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  319 (649)
                                   ..+.++...............++++++|+|||||||.||||++||+++..........+ ++..+|+
T Consensus       130 -------------~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-~~~~~d~  195 (529)
T PRK07867        130 -------------PAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-GLGPDDV  195 (529)
T ss_pred             -------------ccHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-CCCcccE
Confidence                         11333322211111222345678999999999999999999999999998888888888 8889999


Q ss_pred             EEEccChHHHHHHHH-HHHHHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHH
Q 006354          320 YLAYLPLAHVLELAA-ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE  395 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~-~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  395 (649)
                      ++..+|++|.+++.. ++.++..|+++++   +++..+.+.           ++++++|++..+|+.+..++...... .
T Consensus       196 ~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~~~~ll~~~~~~-~  263 (529)
T PRK07867        196 CYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPD-----------VRRYGATYANYVGKPLSYVLATPERP-D  263 (529)
T ss_pred             EEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHHhCCCcc-c
Confidence            999999999999876 5567999999988   344444444           89999999999999988775421100 0


Q ss_pred             hhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcccc
Q 006354          396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ  475 (649)
Q Consensus       396 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~  475 (649)
                                                                    ...+++|. ++||+++++.. ..|.+.+|+++++
T Consensus       264 ----------------------------------------------~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~  295 (529)
T PRK07867        264 ----------------------------------------------DADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVD  295 (529)
T ss_pred             ----------------------------------------------ccccceEE-EecCCCChHHH-HHHHHHhCCcEEE
Confidence                                                          00136784 56888888775 4556667999999


Q ss_pred             ccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCC------------ccEEEE-cccccccccc
Q 006354          476 AYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP------------RGEIVV-GGFNVTAGYF  542 (649)
Q Consensus       476 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~------------~GEl~v-~g~~v~~gY~  542 (649)
                      .||+||++...+..+  ....+++|.|+++  ++++|++++..   ++.|+            .|||++ +|++++.||+
T Consensus       296 ~YG~TE~~~~~~~~~--~~~~~~~g~~~~~--~~i~~~~~~~~---~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~  368 (529)
T PRK07867        296 GFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVDPDTGTE---CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYY  368 (529)
T ss_pred             eecccccccccccCC--CCCCCCcCCCCCC--EEEEECCCCCC---CCCCccccccccccCCcceEEEEecCCccccccc
Confidence            999999986655332  2345789999999  77888555543   66777            899999 9999999999


Q ss_pred             CCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354          543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK  622 (649)
Q Consensus       543 ~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~  622 (649)
                      ++++.|.+.|   .+  |||+|||+|+++++|++++.||.||+||+ +|++|+|.|||++|.+||+|. +|+|+|.+++.
T Consensus       369 ~~~~~~~~~~---~~--g~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~-~~~V~g~~~~~  441 (529)
T PRK07867        369 NDPEADAERM---RG--GVYWSGDLAYRDADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDAT-EVAVYAVPDPV  441 (529)
T ss_pred             CChHhhhhhh---cC--CeEeeccEEEEeCCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCee-EEEEEeccCCC
Confidence            9999999988   66  89999999999999999999999999998 699999999999999999999 99999999988


Q ss_pred             cccchhhhhhh
Q 006354          623 LASSTKIFQSC  633 (649)
Q Consensus       623 ~~~~~~~~~~~  633 (649)
                      .++.+.++..+
T Consensus       442 ~g~~~~a~vv~  452 (529)
T PRK07867        442 VGDQVMAALVL  452 (529)
T ss_pred             CCeeEEEEEEE
Confidence            88776555443

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=2.4e-57  Score=504.02  Aligned_cols=442  Identities=18%  Similarity=0.251  Sum_probs=356.3

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..++.++|+++++  |+++|+++            +++           .+||+||.++++++|++|.+.|+++|++|++
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v   78 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVIC------------GER-----------QFSYRELNQASDNLACSLRRQGIKPGDTALV   78 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3689999999887  99999985            333           5999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH-----HHHHHhhccCCCccEEEEecCC
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFEND  235 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~ii~~~~~  235 (649)
                      +++|+++++++++||+++|++++++.+..+..++..+++++++++++++.+..     .....+....+.++.++..+..
T Consensus        79 ~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  158 (536)
T PRK10946         79 QLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD  158 (536)
T ss_pred             ECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC
Confidence            99999999999999999999888777777788999999999999999986531     1222233334455555543221


Q ss_pred             CCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCC
Q 006354          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG  315 (649)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~  315 (649)
                                     ....+.++...... ........++++++++|||||||.||||++||+++...+......+ .+.
T Consensus       159 ---------------~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~  221 (536)
T PRK10946        159 ---------------GEHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-GFT  221 (536)
T ss_pred             ---------------CCccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCC
Confidence                           11223333332221 1122345678999999999999999999999999999998888887 889


Q ss_pred             CCcEEEEccChHHHHHHHH--HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHH
Q 006354          316 RSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (649)
Q Consensus       316 ~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~  390 (649)
                      .+|++++.+|++|.+++..  .+.++..|+++++..   +..+.+.           ++++++|++.++|.++..+....
T Consensus       222 ~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~~~~l~~~~  290 (536)
T PRK10946        222 PQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPL-----------IEKHQVNVTALVPPAVSLWLQAI  290 (536)
T ss_pred             CCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHH-----------HHHhCCcEEEeChHHHHHHHhhh
Confidence            9999999999999888753  677899999998843   3333333           89999999999999999887643


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC
Q 006354          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG  470 (649)
Q Consensus       391 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~  470 (649)
                      ......                                             ...+++|.+++||+++++++.+.+.+.++
T Consensus       291 ~~~~~~---------------------------------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~g  325 (536)
T PRK10946        291 AEGGSR---------------------------------------------AQLASLKLLQVGGARLSETLARRIPAELG  325 (536)
T ss_pred             cccCcc---------------------------------------------ccccceeEEEECCCCCCHHHHHHHHHhcC
Confidence            211000                                             01148999999999999999999998889


Q ss_pred             CccccccCcccccccccccCC-CCCCCCccCCCc-ccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccc
Q 006354          471 APIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT  548 (649)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t  548 (649)
                      +++++.||+||++...+.... .....+++|+|+ |++.++|+| ++++.   ++.|+.|||+|+|+.++.||+++++.|
T Consensus       326 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~GY~~~~~~t  401 (536)
T PRK10946        326 CQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVAD-ADGNP---LPQGEVGRLMTRGPYTFRGYYKSPQHN  401 (536)
T ss_pred             CeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEEC-CCCCC---CCCCCccEEEEecCccchhhcCCcccc
Confidence            999999999997644432221 122357899998 899999998 55543   779999999999999999999999999


Q ss_pred             hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354          549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~  628 (649)
                      .+.|.  .+  +||+|||+|++|+||++++.||.+|+||+ +|++|+|.+||++|.+||+|. +++|++.++...++...
T Consensus       402 ~~~~~--~d--~~~~TGDl~~~d~~G~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~-~~~v~~~~~~~~g~~~~  475 (536)
T PRK10946        402 ASAFD--AN--GFYCSGDLVSIDPDGYITVVGREKDQINR-GGEKIAAEEIENLLLRHPAVI-HAALVSMEDELMGEKSC  475 (536)
T ss_pred             hhhcc--cC--CceecCceEEECCCCcEEEeccccceeec-CCEEEcHHHHHHHHHhCCCcc-eEEEEcCCCcccCceEE
Confidence            99986  56  89999999999999999999999999997 599999999999999999999 99999999887765544


Q ss_pred             hh
Q 006354          629 IF  630 (649)
Q Consensus       629 ~~  630 (649)
                      ++
T Consensus       476 a~  477 (536)
T PRK10946        476 AF  477 (536)
T ss_pred             EE
Confidence            43

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.8e-57  Score=500.15  Aligned_cols=440  Identities=21%  Similarity=0.226  Sum_probs=358.8

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|.++++++|+++|+.+            +++           .+||+||.++++++|+.|.+.|+++|++|++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i   67 (524)
T PRK06188         11 GATYGHLLVSALKRYPDRPALVL------------GDT-----------RLTYGQLADRISRYIQAFEALGLGTGDAVAL   67 (524)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEE------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            35899999999999999999986            333           6999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECch-hHHHHHHhhccCCCccEEEEecCCCCCc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK-QLKKLSAVSSSLKTIKNVIYFENDGSEK  239 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~l~~~~~~~~~~~~ii~~~~~~~~~  239 (649)
                      +++|+++++++++||+++|++++|++|..+.+++.++++.++++.++++.. ....+.......+.+..++.+.....  
T Consensus        68 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  145 (524)
T PRK06188         68 LSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPD--  145 (524)
T ss_pred             ECCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccc--
Confidence            999999999999999999999999999999999999999999999999876 44444444444444555554432210  


Q ss_pred             cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  319 (649)
                                  ...+.+....... ........++++++|+|||||||.||+|++||+++.+.+......+ .+..+|+
T Consensus       146 ------------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-~~~~~~~  211 (524)
T PRK06188        146 ------------GVDLLAAAAKFGP-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-EWPADPR  211 (524)
T ss_pred             ------------hhhHHHhhhccCc-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCCcCcE
Confidence                        0001111110001 1111223456799999999999999999999999999998888888 8899999


Q ss_pred             EEEccChHHHHHHHHHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHh
Q 006354          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE  396 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  396 (649)
                      +++.+|++|..++. .+.+++.|+++++.+   +..+.+.           ++++++|+++.+|+++..+.+.....   
T Consensus       212 ~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~l~~l~~~~~~~---  276 (524)
T PRK06188        212 FLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFDPAEVLRA-----------IEEQRITATFLVPTMIYALLDHPDLR---  276 (524)
T ss_pred             EEEecCchhhhhHH-HHHHHHcCCEEEEcCCCCHHHHHHH-----------HHHhCCEEEEehHHHHHHHHhCcCcc---
Confidence            99999999988875 567799999999944   3334444           99999999999999999887632110   


Q ss_pred             hcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccc
Q 006354          397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA  476 (649)
Q Consensus       397 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~  476 (649)
                                                                  ....+++|.+++||++++++..+.+.+.++..+++.
T Consensus       277 --------------------------------------------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~  312 (524)
T PRK06188        277 --------------------------------------------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQY  312 (524)
T ss_pred             --------------------------------------------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhhe
Confidence                                                        011248999999999999998888877789999999


Q ss_pred             cCcccccccccccCCCC------CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchh
Q 006354          477 YGLTETCAGSTFSEWDD------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE  550 (649)
Q Consensus       477 YG~TE~~~~~~~~~~~~------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~  550 (649)
                      ||+||++..++......      ....++|+|+|+++++|+| +++..   ++.|+.|||+|+|+.++.||+++++.+..
T Consensus       313 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~  388 (524)
T PRK06188        313 YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGRE---VAQGEVGEICVRGPLVMDGYWNRPEETAE  388 (524)
T ss_pred             eCccccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCCCC---CCCCCeeEEEEECcchhhhhcCChHHhhh
Confidence            99999976665443322      2457899999999999999 44443   67899999999999999999999999998


Q ss_pred             hhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354          551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       551 ~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                      .|   .+  |||+|||+|++++||.+++.||.+|+||+ +|++|+|.+||++|.+||+|. +++|++.+++..++...+
T Consensus       389 ~~---~~--g~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~-~~~v~~~~~~~~~~~~~~  460 (524)
T PRK06188        389 AF---RD--GWLHTGDVAREDEDGFYYIVDRKKDMIVT-GGFNVFPREVEDVLAEHPAVA-QVAVIGVPDEKWGEAVTA  460 (524)
T ss_pred             hh---cC--CceeecceEEEcCCccEEEEeccccceec-CCEEECHHHHHHHHHhCCCee-EEEEEeccCCCcCceEEE
Confidence            88   56  89999999999999999999999999997 599999999999999999999 999999988776654443

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-57  Score=503.14  Aligned_cols=426  Identities=19%  Similarity=0.259  Sum_probs=338.4

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCC-CCCCEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGH-NVDTRAAI  160 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv-~~gd~V~i  160 (649)
                      .|+.++|.+++  .|+++|+.+            ++.           .+||+||.++++++|.+|.++|+ ++||+|++
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~------------~~~-----------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i   57 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRY------------GDR-----------TWTWREVLAEAAARAAALIALADPDRPLHVGV   57 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            57889998764  799999976            333           69999999999999999999999 89999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++.+....+.++.  .+.++.+ .++..     
T Consensus        58 ~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~i-~~~~~-----  129 (540)
T PRK13388         58 LLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRVL-DVDTP-----  129 (540)
T ss_pred             ECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceEE-Eccch-----
Confidence            999999999999999999999999999999999999999999999999988776655431  2233322 22210     


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  320 (649)
                                   .+.++...... ..+.....++++++|+|||||||.||||+++|+++...+......+ ++..+|++
T Consensus       130 -------------~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~  194 (540)
T PRK13388        130 -------------AYAELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-GLTRDDVC  194 (540)
T ss_pred             -------------hhhhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-CCCCCCEE
Confidence                         12222211111 1112235679999999999999999999999999998888888888 89999999


Q ss_pred             EEccChHHHHHHHHHH-HHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHh
Q 006354          321 LAYLPLAHVLELAAES-IMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE  396 (649)
Q Consensus       321 l~~~pl~h~~~~~~~~-~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  396 (649)
                      ++.+|++|..++...+ .++..|+++++.   ++..+.+.           ++++++|++..+|..+..+....... . 
T Consensus       195 l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~l~~l~~~~~~~-~-  261 (540)
T PRK13388        195 YVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDD-----------VRRYGATYFNYVGKPLAYILATPERP-D-  261 (540)
T ss_pred             EEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHH-----------HHHhCCeEEEehHHHHHHHHhCCCCc-c-
Confidence            9999999999887644 579999999884   33344444           99999999999999988776421000 0 


Q ss_pred             hcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccc
Q 006354          397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA  476 (649)
Q Consensus       397 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~  476 (649)
                                                                   ....+++.+ + |++++++..+.+.+.+++++++.
T Consensus       262 ---------------------------------------------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~  294 (540)
T PRK13388        262 ---------------------------------------------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDG  294 (540)
T ss_pred             ---------------------------------------------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecc
Confidence                                                         000256643 3 56677888888888889999999


Q ss_pred             cCcccccccccccCCCCCCCCccCCCcccceEE-----------EEecCCCCcccCCCCCCccEEEEc-cccccccccCC
Q 006354          477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIK-----------LVSWDEGGYKTSDKPMPRGEIVVG-GFNVTAGYFNN  544 (649)
Q Consensus       477 YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~-----------i~d~~~~~~~~~~~~g~~GEl~v~-g~~v~~gY~~~  544 (649)
                      ||+||++.+++...  ....+++|+|++|++++           ++| +++...  .+.+..|||+++ |++++.||+++
T Consensus       295 YG~tE~~~~~~~~~--~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~--~~~~~~GEl~v~~g~~~~~gY~~~  369 (540)
T PRK13388        295 YGSSEGAVIVVREP--GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALL--NADEAIGELVNTAGAGFFEGYYNN  369 (540)
T ss_pred             cccccccceeecCC--CCCCCCCCCCCCCcEEEcCCCCccccceecc-Cccccc--cCCCcceEEEEecCCcccccccCC
Confidence            99999987665432  23457999999997653           222 122111  134678999998 99999999999


Q ss_pred             CccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcc
Q 006354          545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLA  624 (649)
Q Consensus       545 ~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~  624 (649)
                      |+.|++.|   .+  |||+|||+|++++||+++++||+||+||+ +|++|+|.+||++|.+||+|. +|+|+|.+++..|
T Consensus       370 ~~~t~~~~---~~--g~~~TGD~~~~~~dg~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~-~~~v~g~~~~~~g  442 (540)
T PRK13388        370 PEATAERM---RH--GMYWSGDLAYRDADGWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAIN-RVAVYAVPDERVG  442 (540)
T ss_pred             hHHHHHHh---hc--CceeccceEEEcCCCcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCce-EEEEEEccCCCCC
Confidence            99999998   56  89999999999999999999999999998 599999999999999999999 9999999988777


Q ss_pred             cch
Q 006354          625 SST  627 (649)
Q Consensus       625 ~~~  627 (649)
                      +.+
T Consensus       443 ~~~  445 (540)
T PRK13388        443 DQV  445 (540)
T ss_pred             cee
Confidence            554

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-56  Score=499.90  Aligned_cols=456  Identities=20%  Similarity=0.256  Sum_probs=357.6

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .|+.++|+++++++|++++++...          +|         ..+.+||+||.++++++|++|++.|+++||+|+++
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~~~----------~~---------~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~   70 (542)
T PRK06018         10 LLCHRIIDHAARIHGNREVVTRSV----------EG---------PIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATI   70 (542)
T ss_pred             CCHHHHHHHHHHhCCCceEEEeec----------cC---------CceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            599999999999999999997421          22         23479999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++.+..+.+.++....+.++.++.+.+...... 
T Consensus        71 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (542)
T PRK06018         71 AWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQ-  149 (542)
T ss_pred             cCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccc-
Confidence            9999999999999999999999999999999999999999999999999888888777666666777666543321100 


Q ss_pred             CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHH-HHH-HHHHhhCCCCCCCcE
Q 006354          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV-ATA-AAIKTLIPNPGRSDV  319 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~-~~~-~~~~~~~~~~~~~d~  319 (649)
                           ........+.++...... ........++++++|+|||||||.||||++||++.+ ... ......+ ++..+|+
T Consensus       150 -----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~~d~  222 (542)
T PRK06018        150 -----TTLKNAVAYEEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAADT  222 (542)
T ss_pred             -----cCccccccHHHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-CCCCCCE
Confidence                 000123345555443321 111234466889999999999999999999999743 222 2233445 7889999


Q ss_pred             EEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcc
Q 006354          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~  399 (649)
                      ++..+|++|.+++...+.++..|+++++....  .+     ...++..++++++|++.++|+++..+........     
T Consensus       223 ~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~--~~-----~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-----  290 (542)
T PRK06018        223 MLPVVPLFHANSWGIAFSAPSMGTKLVMPGAK--LD-----GASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG-----  290 (542)
T ss_pred             EEEecCHHHHhhhHHHHhhhhcCceEEccCcC--CC-----HHHHHHHHHhcCCceeecCcHHHHHHHhcccccC-----
Confidence            99999999999988777889999999874211  01     1112333899999999999999998876422100     


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCc
Q 006354          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL  479 (649)
Q Consensus       400 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~  479 (649)
                                                                ...++||.+++||+++++++.+.|++ +++++++.||+
T Consensus       291 ------------------------------------------~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~  327 (542)
T PRK06018        291 ------------------------------------------LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGM  327 (542)
T ss_pred             ------------------------------------------CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecc
Confidence                                                      01147999999999999999999999 89999999999


Q ss_pred             ccccccccccCCCC-----------CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccc
Q 006354          480 TETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT  548 (649)
Q Consensus       480 TE~~~~~~~~~~~~-----------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t  548 (649)
                      ||++.+++......           ....++|+|.++++++|+| +++...+ ++.+..|||+++|++++.||+++   +
T Consensus       328 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~-~~~~~~Gel~i~g~~~~~gy~~~---~  402 (542)
T PRK06018        328 TEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELP-WDGKTFGRLKVRGPAVAAAYYRV---D  402 (542)
T ss_pred             cccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCC-CCCCceeEEEEecCCcchhhhcC---c
Confidence            99987765432111           1135789999999999999 4554422 22236899999999999999983   2


Q ss_pred             hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354          549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~  628 (649)
                      ...+.  .+  +||+|||++++++||++++.||.||+||+ +|++|+|.+||+++.+||.|. +|+|++.+++..++...
T Consensus       403 ~~~~~--~~--~~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~-~~~v~~~~~~~~~~~~~  476 (542)
T PRK06018        403 GEILD--DD--GFFDTGDVATIDAYGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVA-EAAVIGVYHPKWDERPL  476 (542)
T ss_pred             ccEec--CC--cEEEcCCEEEEcCCccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcce-eEEEEeccCCCcCceeE
Confidence            23332  44  89999999999999999999999999996 699999999999999999999 99999998877665444


Q ss_pred             hh
Q 006354          629 IF  630 (649)
Q Consensus       629 ~~  630 (649)
                      ++
T Consensus       477 ~~  478 (542)
T PRK06018        477 LI  478 (542)
T ss_pred             EE
Confidence            43

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.7e-56  Score=498.06  Aligned_cols=454  Identities=24%  Similarity=0.309  Sum_probs=353.2

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|+++++++|+++|+.+            +++           .+||.||.++++++|++|.++|+.+||+|++
T Consensus        20 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i   76 (541)
T TIGR03205        20 RGTLPDLLSKAAADYGPRPALEF------------RDR-----------PITYTELEAMAETAAAALLRAGYGKDASVAL   76 (541)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEE------------CCc-----------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            35899999999999999999986            333           6999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh--HHHHHHhhccCCCccEEEEecCCCCC
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ--LKKLSAVSSSLKTIKNVIYFENDGSE  238 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~l~~~~~~~~~~~~ii~~~~~~~~  238 (649)
                      +++|+++++++++||+++|++++|++|.++.+++.+++++++++++|+++..  .+.+.+.... ..+..+++++.....
T Consensus        77 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  155 (541)
T TIGR03205        77 YLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWG  155 (541)
T ss_pred             ECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccc
Confidence            9999999999999999999999999999999999999999999999998632  2222222111 123344444332110


Q ss_pred             c-cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC-----C
Q 006354          239 K-DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-----P  312 (649)
Q Consensus       239 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~-----~  312 (649)
                      . .......+......+++++....... .......++++++++|||||||.||||+++|+++.+..... ..+     .
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~  233 (541)
T TIGR03205       156 KVGTPQAPIPADPRIVTYADFVKGAAAP-AEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRA  233 (541)
T ss_pred             cccccccccCCCcccccHHHHHhcCCCC-CCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-Hhhcccccc
Confidence            0 00000011122345566665432221 11234567899999999999999999999999987655432 211     0


Q ss_pred             CCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354          313 NPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (649)
Q Consensus       313 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~  388 (649)
                      .....+++++.+|++|.+++.. ++.++..|+++++.+   +..+.+.           ++++++|++.++|+++..+..
T Consensus       234 ~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~  302 (541)
T TIGR03205       234 TRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRD-----------IEEKRATVFPGVPTMWIALAN  302 (541)
T ss_pred             cCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------HHHcCCeEeechHHHHHHHHh
Confidence            2234578999999999988766 567889999988743   3333333           999999999999999988764


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (649)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~  468 (649)
                      ....                                               +....+++|.+++||+++++++.+++++.
T Consensus       303 ~~~~-----------------------------------------------~~~~~~~l~~i~~gg~~~~~~~~~~~~~~  335 (541)
T TIGR03205       303 DPSL-----------------------------------------------EKRDLSSLATIGSGGAPLPVEVANFFERK  335 (541)
T ss_pred             Cccc-----------------------------------------------cccCccccceEEEccccCCHHHHHHHHHH
Confidence            2100                                               00011379999999999999999999888


Q ss_pred             cCCccccccCcccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCcc
Q 006354          469 MGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (649)
Q Consensus       469 ~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~  547 (649)
                      ++.++++.||+||++.+++..... ....+++|.|++++.++|++.++.+.  .++.|+.|||+++|++++.||+++|+.
T Consensus       336 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~  413 (541)
T TIGR03205       336 TGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTK--VLPPGEVGELRIRGPNVTRGYWNRPEE  413 (541)
T ss_pred             hCCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCc--cCCCCCeeEEEEecCCccccccCChhh
Confidence            899999999999998776654332 23457899999999999876443332  267899999999999999999999999


Q ss_pred             chhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       548 t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      |++.|   .+  +||+|||++++++||+++++||.||+||+ +|++|+|.+||+++.+||.|. +++|++..+...++..
T Consensus       414 ~~~~~---~~--~~~~TGD~~~~~~~g~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~-~~~v~~~~~~~~~~~~  486 (541)
T TIGR03205       414 SAEAF---VG--DRFLTGDIGYMDTDGYFFLVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQ-EVIVIGIPDQYRGEAA  486 (541)
T ss_pred             hHhhh---cc--CCcccCceEEEcCCceEEEEccccCeEEE-CCEEECHHHHHHHHHhCCCee-eEEEEecCCcccCceE
Confidence            99998   55  79999999999999999999999999997 599999999999999999999 9999998877655433

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.8e-57  Score=508.49  Aligned_cols=468  Identities=20%  Similarity=0.246  Sum_probs=354.2

Q ss_pred             ccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCce
Q 006354           50 QRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYE  129 (649)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~  129 (649)
                      +..++...+.....+.....   ..........|+.++|.++++++|+++|+++            +++           
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~tl~~~l~~~a~~~p~~~Ai~~------------~~~-----------   61 (600)
T PRK08279          8 AARLPRRLPDLPGILRGLKR---TALITPDSKRSLGDVFEEAAARHPDRPALLF------------EDQ-----------   61 (600)
T ss_pred             eccccccCCchhHHHhhhhh---hcccCCCCcccHHHHHHHHHHhCCCCcEEEe------------CCC-----------
Confidence            34444444555544443333   1111223346999999999999999999986            333           


Q ss_pred             EEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEEC
Q 006354          130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD  209 (649)
Q Consensus       130 ~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  209 (649)
                      .+||+||.++++++|++|++.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++
T Consensus        62 ~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~  141 (600)
T PRK08279         62 SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVG  141 (600)
T ss_pred             cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCC----CCCCCCCCCCCeEEEEeecC
Q 006354          210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRS----PVDPSLPSQNGVAVIMYTSG  285 (649)
Q Consensus       210 ~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSG  285 (649)
                      .+..+.+............++..++... .           ....+.++.......    .........+++++|+||||
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSG  209 (600)
T PRK08279        142 EELVEAFEEARADLARPPRLWVAGGDTL-D-----------DPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSG  209 (600)
T ss_pred             hHHHHHHHHHhhhhcccceEEEecCccc-c-----------ccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCC
Confidence            9888777665544433333333322110 0           012233333221111    11123346789999999999


Q ss_pred             CCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHH-HHHHhCceEEeCC---cccccccchhhc
Q 006354          286 STGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES-IMLCAGCAIGYGS---TLTMTDTSSKIK  361 (649)
Q Consensus       286 STG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~-~~l~~G~~l~~~~---~~~l~~~~~~~~  361 (649)
                      |||.||||++||+++++.+.+....+ .+.++|++++.+|++|.+++...+ .++..|+++++.+   +..+.+.     
T Consensus       210 TTG~PKgV~~sh~~l~~~~~~~~~~~-~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----  283 (600)
T PRK08279        210 TTGLPKAAVMSHMRWLKAMGGFGGLL-RLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDD-----  283 (600)
T ss_pred             CCCCCcEEEEeHHHHHHHHHHHHHhc-CCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHH-----
Confidence            99999999999999999999988887 899999999999999999988744 5688888888843   3333333     


Q ss_pred             cCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHH
Q 006354          362 KGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA  441 (649)
Q Consensus       362 ~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (649)
                            ++++++|++.++|++++.+.........                                              
T Consensus       284 ------i~~~~~t~~~~~p~l~~~l~~~~~~~~~----------------------------------------------  311 (600)
T PRK08279        284 ------VRRYRATAFQYIGELCRYLLNQPPKPTD----------------------------------------------  311 (600)
T ss_pred             ------HHHhcceEEeehHHHHHHHHhCCCCccc----------------------------------------------
Confidence                  8999999999999999887653110000                                              


Q ss_pred             HhCCceEEEEecCCCCCHHHHHHHHhhcCC-ccccccCcccccccccccCCCCCCCCccCCCcc----cceEEEEecCCC
Q 006354          442 VLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP----CCYIKLVSWDEG  516 (649)
Q Consensus       442 ~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p----~~~v~i~d~~~~  516 (649)
                       ...++|.+  +|+++++++.+.|.+.++. .+++.||+||++...+..   ....+++|.+.+    +..+...+.+.+
T Consensus       312 -~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~  385 (600)
T PRK08279        312 -RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV---FNFDGTVGRVPLWLAHPYAIVKYDVDTG  385 (600)
T ss_pred             -cCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---CCCCcccccccccccccceeeeeccCcC
Confidence             01367754  4788999999999988875 599999999987643322   234467777655    333332221111


Q ss_pred             -------CcccCCCCCCccEEE--EccccccccccCCCccchhhhccC--CCcccceeeCcEEEEccCCeEEEEecCCCe
Q 006354          517 -------GYKTSDKPMPRGEIV--VGGFNVTAGYFNNPGKTSEVYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDI  585 (649)
Q Consensus       517 -------~~~~~~~~g~~GEl~--v~g~~v~~gY~~~~~~t~~~f~~~--~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~  585 (649)
                             +....+++|+.|||+  |+|++++.|| ++++.|++.|..+  .++.+||+|||+|++++||++++.||.||+
T Consensus       386 ~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~  464 (600)
T PRK08279        386 EPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDT  464 (600)
T ss_pred             ceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCe
Confidence                   112237889999998  7899999999 9999999887532  234489999999999999999999999999


Q ss_pred             EEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354          586 VKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK  622 (649)
Q Consensus       586 iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~  622 (649)
                      ||+ +|++|+|.|||++|.+||+|. +|+|+|.+++.
T Consensus       465 ik~-~G~~i~p~eIE~~l~~~p~V~-~a~v~gv~~~~  499 (600)
T PRK08279        465 FRW-KGENVATTEVENALSGFPGVE-EAVVYGVEVPG  499 (600)
T ss_pred             EEE-CCcccCHHHHHHHHhcCCCcc-eEEEEEeecCC
Confidence            998 599999999999999999999 99999987543

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-56  Score=501.59  Aligned_cols=460  Identities=22%  Similarity=0.307  Sum_probs=358.5

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..++.++|.++++++|+++|+.+            ++.           .+||+||.++++++|+.|.+.|+++||+|++
T Consensus        22 ~~~i~~~l~~~a~~~p~~~a~~~------------~~~-----------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i   78 (557)
T PRK07059         22 YPSLADLLEESFRQYADRPAFIC------------MGK-----------AITYGELDELSRALAAWLQSRGLAKGARVAI   78 (557)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEE------------cCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            36899999999999999999986            333           6999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|+++++++++||+++|++++|++|.++.+++.+++++++++++|+++.....+..+.... ..+.++..........
T Consensus        79 ~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  157 (557)
T PRK07059         79 MMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT-AVKHVVVASMGDLLGF  157 (557)
T ss_pred             ECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc-CCceeEEecccccccc
Confidence            999999999999999999999999999999999999999999999999987766665544322 2334433321110000


Q ss_pred             CC-------------CCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHH
Q 006354          241 SG-------------VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI  307 (649)
Q Consensus       241 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~  307 (649)
                      ..             ...+ .......+++................++++|+|+|||||||.||||+++|++++..+...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~  236 (557)
T PRK07059        158 KGHIVNFVVRRVKKMVPAW-SLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQM  236 (557)
T ss_pred             ccccccccccccccccccc-CCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHH
Confidence            00             0000 001223455555443333333345678999999999999999999999999998766543


Q ss_pred             HhhCC---CC---CCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC-cccccccchhhccCccccceeecceEEEec
Q 006354          308 KTLIP---NP---GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS-TLTMTDTSSKIKKGTKGDVSVLKPTLMAAV  379 (649)
Q Consensus       308 ~~~~~---~~---~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~-~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~  379 (649)
                      ...+.   ..   .....+++.+|++|.+++.. .+.++..|++.++.+ +...        ..++..++++++|.+.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~i~~~~vt~~~~~  308 (557)
T PRK07059        237 EAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDI--------PGFIKELKKYQVHIFPAV  308 (557)
T ss_pred             hhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCH--------HHHHHHHHHhCCeeeecC
Confidence            32220   11   12457888999999988754 556778888876632 2111        112333899999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCH
Q 006354          380 PAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA  459 (649)
Q Consensus       380 P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~  459 (649)
                      |.++..+......                                               .....+++|.++.||+++++
T Consensus       309 p~~~~~l~~~~~~-----------------------------------------------~~~~~~~l~~~~~gg~~~~~  341 (557)
T PRK07059        309 NTLYNALLNNPDF-----------------------------------------------DKLDFSKLIVANGGGMAVQR  341 (557)
T ss_pred             HHHHHHHHcCcCc-----------------------------------------------CcCCchhheEEEeccccCCH
Confidence            9999988653110                                               00011378999999999999


Q ss_pred             HHHHHHHhhcCCccccccCcccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcccccc
Q 006354          460 DSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT  538 (649)
Q Consensus       460 ~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~  538 (649)
                      .+.+.|.+.+++++++.||+||++.+++..... ....+++|.|+++++++|+| ++++.   +++|+.|||+|+|+.++
T Consensus       342 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~  417 (557)
T PRK07059        342 PVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGND---LPLGEPGEICIRGPQVM  417 (557)
T ss_pred             HHHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCC---CCCCCceEEEEeCCccc
Confidence            999999988899999999999998877655433 23457999999999999998 55543   78899999999999999


Q ss_pred             ccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEec
Q 006354          539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRN  618 (649)
Q Consensus       539 ~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~  618 (649)
                      .||+++++.|.+.|.  .+  |||+|||+|++++||.++++||++|+||+ +|++|+|.+||++|.+||+|. +++|++.
T Consensus       418 ~gY~~~~~~~~~~~~--~~--g~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~-~~~v~~~  491 (557)
T PRK07059        418 AGYWNRPDETAKVMT--AD--GFFRTGDVGVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVL-EVAAVGV  491 (557)
T ss_pred             hhhhcCHHHHhhhcc--cC--CceecCcEEEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCcee-EEEEEec
Confidence            999999999998886  55  89999999999999999999999999998 599999999999999999999 9999998


Q ss_pred             CCCCcccchhhh
Q 006354          619 GPMKLASSTKIF  630 (649)
Q Consensus       619 ~~~~~~~~~~~~  630 (649)
                      .+...++...++
T Consensus       492 ~~~~~ge~~~~~  503 (557)
T PRK07059        492 PDEHSGEAVKLF  503 (557)
T ss_pred             ccCCCCeeEEEE
Confidence            887766544443

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.7e-56  Score=500.45  Aligned_cols=451  Identities=20%  Similarity=0.246  Sum_probs=347.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .+++++|+..++.+|+++|+.+            ++.           .+||+||.++++++|.+|.+.|+++||+|+++
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~   76 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVH------------GSV-----------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVI   76 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            5799999999999999999975            332           58999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCC-------CccEEEEecC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK-------TIKNVIYFEN  234 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~-------~~~~ii~~~~  234 (649)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++...+....+.....       ....++.++.
T Consensus        77 ~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (567)
T PLN02479         77 APNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGD  156 (567)
T ss_pred             CCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecC
Confidence            999999999999999999999999999999999999999999999999887665544332111       1223444432


Q ss_pred             CCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC
Q 006354          235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (649)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~  314 (649)
                      ..... ...... .......+.++................++.++++|||||||.||||++||+++..........+ .+
T Consensus       157 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~  233 (567)
T PLN02479        157 PTCDP-KSLQYA-LGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-GM  233 (567)
T ss_pred             CcCCc-cccccc-cccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-CC
Confidence            21100 000000 0112335666554322111111223345778899999999999999999999887666666666 78


Q ss_pred             CCCcEEEEccChHHHHHHHHHHH-HHHhCceEEe--CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHH
Q 006354          315 GRSDVYLAYLPLAHVLELAAESI-MLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (649)
Q Consensus       315 ~~~d~~l~~~pl~h~~~~~~~~~-~l~~G~~l~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  391 (649)
                      ++++++++.+|++|..++...+. .+..|.++++  +++..+.+.           ++++++|++.++|.+++.+.....
T Consensus       234 ~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~P~~~~~l~~~~~  302 (567)
T PLN02479        234 NEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSA-----------IANYGVTHFCAAPVVLNTIVNAPK  302 (567)
T ss_pred             CCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHHHHHHH-----------HHHcCCeEEEecHHHHHHHHhhhh
Confidence            88999999999999998766543 4566666655  344444444           999999999999999998876421


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCC
Q 006354          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA  471 (649)
Q Consensus       392 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~  471 (649)
                      ....                                              ...++++.++++|+++++.+.+.|++. +.
T Consensus       303 ~~~~----------------------------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~  335 (567)
T PLN02479        303 SETI----------------------------------------------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GF  335 (567)
T ss_pred             hccc----------------------------------------------ccccceeEEEEcCCCCCHHHHHHHHhc-CC
Confidence            1000                                              011478999999999999999988875 89


Q ss_pred             ccccccCcccccccccccCC---------C-CCC-CCccCCCcccce-EEEEecCCCCcccCCCCC--CccEEEEccccc
Q 006354          472 PIGQAYGLTETCAGSTFSEW---------D-DPS-VGRVGPPVPCCY-IKLVSWDEGGYKTSDKPM--PRGEIVVGGFNV  537 (649)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~---------~-~~~-~~~vG~p~p~~~-v~i~d~~~~~~~~~~~~g--~~GEl~v~g~~v  537 (649)
                      ++++.||+||+++.++....         . ... ...+|.+.++++ ++|+|++++..   ++.+  ++|||+++|+++
T Consensus       336 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~---~~~~g~~~GEl~v~g~~~  412 (567)
T PLN02479        336 RVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKP---VPADGKTMGEIVMRGNMV  412 (567)
T ss_pred             ceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcc---cCCCCCCceEEEEeccch
Confidence            99999999998654432210         0 001 145788888886 88988655544   4432  689999999999


Q ss_pred             cccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEe
Q 006354          538 TAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWR  617 (649)
Q Consensus       538 ~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g  617 (649)
                      +.|||++|+.|++.|   .+  +||+|||+|+++++|+++++||.||+||+ +|++|+|.+||++|.+||.|. +|+|++
T Consensus       413 ~~GY~~~~~~t~~~~---~~--g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~-~~~v~~  485 (567)
T PLN02479        413 MKGYLKNPKANEEAF---AN--GWFHSGDLGVKHPDGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVL-EASVVA  485 (567)
T ss_pred             hhhhhcCcccccchh---cC--CceecceeEEEcCCccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccc-eeeEEe
Confidence            999999999999999   56  89999999999999999999999999997 599999999999999999999 999999


Q ss_pred             cCCCCcccc
Q 006354          618 NGPMKLASS  626 (649)
Q Consensus       618 ~~~~~~~~~  626 (649)
                      ..+...++.
T Consensus       486 ~~~~~~~~~  494 (567)
T PLN02479        486 RPDERWGES  494 (567)
T ss_pred             ccchhcCce
Confidence            987664443

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=3.9e-57  Score=486.97  Aligned_cols=406  Identities=32%  Similarity=0.508  Sum_probs=318.2

Q ss_pred             HHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH
Q 006354           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (649)
Q Consensus        88 ~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~  167 (649)
                      |+++|+++||++|+++ +          ++           +++||+||.++++++|..|+++|+++||+|+|+++|+++
T Consensus         1 f~~~a~~~pd~~a~~~-~----------~~-----------~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~   58 (417)
T PF00501_consen    1 FERQAQRYPDRIALID-D----------EG-----------RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIE   58 (417)
T ss_dssp             HHHHHHHSTTSEEEEE-T----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHH
T ss_pred             ChhHHhhCCCceEEEE-C----------CC-----------EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccce
Confidence            7899999999999986 1          23           479999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEE----CchhHHHHHHhhccCCCccEEEEecCCCCCccCCC
Q 006354          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGV  243 (649)
Q Consensus       168 ~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~  243 (649)
                      ++++++||+++|++++|++|.++.+++.++++.++++++|+    +......+............++.++.......   
T Consensus        59 ~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  135 (417)
T PF00501_consen   59 FVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKK---  135 (417)
T ss_dssp             HHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTC---
T ss_pred             eeeeecccccccccccccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccccc---
Confidence            99999999999999999999999999999999999999997    33333344444443344455555553322110   


Q ss_pred             CCCCCCceEeehHHHHhcCCCCCCCCCC-CCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHH--hhCCCCCCCcEE
Q 006354          244 SGGISNWTVSSFSEVEKLGKRSPVDPSL-PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK--TLIPNPGRSDVY  320 (649)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~~d~~  320 (649)
                             ......+...   ...   .+ ..++++++++|||||||.||+|.+||+++++.+..+.  ... +++  |++
T Consensus       136 -------~~~~~~~~~~---~~~---~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~--d~~  199 (417)
T PF00501_consen  136 -------EALKSASLSD---EPQ---SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYF-GLG--DRI  199 (417)
T ss_dssp             -------HHHHHHHHCH---CSH---STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTT-TTT--TEE
T ss_pred             -------cccccccccc---ccc---cCCCCccceeEeecccccccccccccccccccccccccccccccc-ccC--ceE
Confidence                   0000000000   000   00 0578999999999999999999999999999988865  223 334  599


Q ss_pred             EEccChHHHHHH-HHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcc
Q 006354          321 LAYLPLAHVLEL-AAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (649)
Q Consensus       321 l~~~pl~h~~~~-~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~  399 (649)
                      ++++|++|.+++ ..++.++..|+++++.+.....+     +..++..++++++|+++++|.+++.+.+..... ...  
T Consensus       200 l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~-----~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~~--  271 (417)
T PF00501_consen  200 LSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFD-----PESLLELISRYKPTILFAVPSMLEALLQSPEEK-TKI--  271 (417)
T ss_dssp             EESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHH-----HHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HHG--
T ss_pred             Eeeccccccccccccccccccccccccccccccccc-----cccchhccccccccccccccccccccccccccc-ccc--
Confidence            999999999999 66889999999999966554311     111223399999999999999999997622111 000  


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCC-ccccccC
Q 006354          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQAYG  478 (649)
Q Consensus       400 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~-~l~~~YG  478 (649)
                                                              +....++||.+++||+++++++.+.+++.++. +|++.||
T Consensus       272 ----------------------------------------~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG  311 (417)
T PF00501_consen  272 ----------------------------------------SKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYG  311 (417)
T ss_dssp             ----------------------------------------TTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEE
T ss_pred             ----------------------------------------cccccccccccccccccCChhhccccccccccccceeccc
Confidence                                                    00011479999999999999999999999877 9999999


Q ss_pred             cccccccccccC--CCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC
Q 006354          479 LTETCAGSTFSE--WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE  556 (649)
Q Consensus       479 ~TE~~~~~~~~~--~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~  556 (649)
                      +||++.+++...  ......+++|.|+|+++++|+|+++++.   +++|+.|||+|+|++++.||+++|+.|++.|.  .
T Consensus       312 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~---~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~--~  386 (417)
T PF00501_consen  312 STETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEP---LPPGEPGEIVIRGPNVFSGYYNDPELTAEAFI--D  386 (417)
T ss_dssp             EGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSB---ESTTSEEEEEEESTTSBSEETTBHHHHHHHEE--T
T ss_pred             ccccceeeeccccccccccccccccccccccccccccccccc---ccccccccccccCCccceeeeccccccccccc--c
Confidence            999999887663  2233668899999999999999665665   57899999999999999999999999999996  4


Q ss_pred             CcccceeeCcEEEEccCCeEEEEecCCCeEEcC
Q 006354          557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQ  589 (649)
Q Consensus       557 ~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~  589 (649)
                      +  |||+|||+|++|+||+|+++||.||+||+|
T Consensus       387 ~--~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  387 D--GWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             T--SEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             c--cceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            4  799999999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.5e-56  Score=498.44  Aligned_cols=458  Identities=21%  Similarity=0.264  Sum_probs=355.9

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .++.++|+++++.+|+++|+.+            .++           .+||+||.++++++|.+|.++|+++|++|+++
T Consensus        33 ~~l~~~l~~~a~~~p~~~al~~------------~~~-----------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~   89 (567)
T PRK06178         33 RPLTEYLRAWARERPQRPAIIF------------YGH-----------VITYAELDELSDRFAALLRQRGVGAGDRVAVF   89 (567)
T ss_pred             ccHHHHHHHHHHHCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            6899999999999999999976            333           59999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++++++++||+++|++++|++|.++.+++.+++++++++++++++...+.+.++.... .++.++.....+.....
T Consensus        90 ~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~  168 (567)
T PRK06178         90 LPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAE  168 (567)
T ss_pred             CCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEeccccccccc
Confidence            99999999999999999999999999999999999999999999999998888777665443 34444443321110000


Q ss_pred             CCCCCCCC-----ceEeehHHHHhcCC--CCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC
Q 006354          242 GVSGGISN-----WTVSSFSEVEKLGK--RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (649)
Q Consensus       242 ~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~  314 (649)
                      .....+..     .....+.++.....  ..........++++|+|+|||||||.||||++||++++..+.........+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~  248 (567)
T PRK06178        169 PTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVG  248 (567)
T ss_pred             cccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccC
Confidence            00000000     00011222222111  111122345679999999999999999999999999988766554432267


Q ss_pred             CCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHH
Q 006354          315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (649)
Q Consensus       315 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~  390 (649)
                      .++|++++++|++|.+++.. ++.++..|+++++.+   +..+...           ++++++|.+..+|..+..+....
T Consensus       249 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~-----------i~~~~~t~~~~~~~~~~~l~~~~  317 (567)
T PRK06178        249 GEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAA-----------VERYRVTRTVMLVDNAVELMDHP  317 (567)
T ss_pred             CCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHHhCC
Confidence            88999999999999999864 677899999999843   3344444           99999999999999887775421


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEE--ecCCCCCHHHHHHHHhh
Q 006354          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI--CGGAPLSADSQRFINIC  468 (649)
Q Consensus       391 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~--~gG~~l~~~~~~~~~~~  468 (649)
                      ..   .                                            ....++++.+.  +.|+++++++.+.|+..
T Consensus       318 ~~---~--------------------------------------------~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  350 (567)
T PRK06178        318 RF---A--------------------------------------------EYDLSSLRQVRVVSFVKKLNPDYRQRWRAL  350 (567)
T ss_pred             CC---C--------------------------------------------CCCcchheeeeeccccccCCHHHHHHHHHH
Confidence            00   0                                            00012556554  44689999999999998


Q ss_pred             cCCccc-cccCcccccccccccCC---C----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcccccccc
Q 006354          469 MGAPIG-QAYGLTETCAGSTFSEW---D----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG  540 (649)
Q Consensus       469 ~~~~l~-~~YG~TE~~~~~~~~~~---~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~g  540 (649)
                      ++..++ +.||+||++..++....   .    ...++++|+|+||++++|+|+++++.   ++.|+.|||+|+|++++.|
T Consensus       351 ~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~---~~~g~~Gel~v~g~~v~~g  427 (567)
T PRK06178        351 TGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGEL---LPLGAEGEIVVRTPSLLKG  427 (567)
T ss_pred             hCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCc---CCCCCceEEEEECCccccc
Confidence            887776 47999998766543321   1    12346799999999999999666654   6789999999999999999


Q ss_pred             ccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCC
Q 006354          541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGP  620 (649)
Q Consensus       541 Y~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~  620 (649)
                      |+++++.+++.|   .+  |||+|||+|++++||+++++||++|+||+ +|++|+|.+||+++.++|+|. +++|++..+
T Consensus       428 Y~~~~~~~~~~~---~d--g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~-~~~v~~~~~  500 (567)
T PRK06178        428 YWNKPEATAEAL---RD--GWLHTGDIGKIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVL-GSAVVGRPD  500 (567)
T ss_pred             ccCChhhhhhcc---cC--CceeecceEEEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCee-EEEEEcCcC
Confidence            999999999888   56  79999999999999999999999999998 599999999999999999999 999999988


Q ss_pred             CCcccchhhhh
Q 006354          621 MKLASSTKIFQ  631 (649)
Q Consensus       621 ~~~~~~~~~~~  631 (649)
                      ...++...++.
T Consensus       501 ~~~g~~~~~~v  511 (567)
T PRK06178        501 PDKGQVPVAFV  511 (567)
T ss_pred             cccCcceEEEE
Confidence            77665444433

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.8e-57  Score=493.93  Aligned_cols=417  Identities=24%  Similarity=0.291  Sum_probs=334.6

Q ss_pred             HHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH
Q 006354           89 EQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW  168 (649)
Q Consensus        89 ~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~  168 (649)
                      +.+++.+||++|+....          +++           .+||+||.++++++|++|++.|+++||+|+|+++|++++
T Consensus         2 ~~~a~~~p~~~a~~~~~----------~~~-----------~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~   60 (488)
T PRK09088          2 AFHARLQPQRLAAVDLA----------LGR-----------RWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWL   60 (488)
T ss_pred             chhhhhCCCceEEEecC----------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            45778999999987521          333           699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCC
Q 006354          169 FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS  248 (649)
Q Consensus       169 vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~  248 (649)
                      +++++||+++|++++|+++.++++++.+++++++++++|+++.......                               
T Consensus        61 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-------------------------------  109 (488)
T PRK09088         61 VALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-------------------------------  109 (488)
T ss_pred             HHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-------------------------------
Confidence            9999999999999999999999999999999999999999875432100                               


Q ss_pred             CceEeehHHHHhcCC-CCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChH
Q 006354          249 NWTVSSFSEVEKLGK-RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (649)
Q Consensus       249 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (649)
                        ....++++..... ..........++++++++|||||||.||+|.+||++++..+....... .+..+|++++.+|++
T Consensus       110 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~  186 (488)
T PRK09088        110 --DVEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-RVDAHSSFLCDAPMF  186 (488)
T ss_pred             --cccchhhhhhhccccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEecchH
Confidence              0011111111111 011112234568899999999999999999999999998887777666 788899999999999


Q ss_pred             HHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccce--eecceEEEechHHHHHHHHHHHHHHHhhcchhHHH
Q 006354          328 HVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS--VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL  404 (649)
Q Consensus       328 h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~--~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~  404 (649)
                      |++++.. ++.++..|+++++.+.....+.        +..+.  ++++|+++++|.+++.+.......           
T Consensus       187 ~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~-----------  247 (488)
T PRK09088        187 HIIGLITSVRPVLAVGGSILVSNGFEPKRT--------LGRLGDPALGITHYFCVPQMAQAFRAQPGFD-----------  247 (488)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEcCCCCHHHH--------HHHHHhhccCCcEEeeHHHHHHHHHhCcCcC-----------
Confidence            9999876 5567889999988443221111        11143  589999999999998876421000           


Q ss_pred             HHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccc
Q 006354          405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA  484 (649)
Q Consensus       405 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~  484 (649)
                                                          ....++||.+++||++++....+.+... ++++++.||+||++.
T Consensus       248 ------------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~  290 (488)
T PRK09088        248 ------------------------------------AAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGT  290 (488)
T ss_pred             ------------------------------------ccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeeccccccc
Confidence                                                0001379999999999999988777754 899999999999987


Q ss_pred             cccccCC---CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccc
Q 006354          485 GSTFSEW---DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW  561 (649)
Q Consensus       485 ~~~~~~~---~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w  561 (649)
                      +......   ...+.+++|.|+|+++++|+| +++..   ++.|..|||+|+|++++.||+++++.|++.|.  .+  ||
T Consensus       291 ~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~--~~--g~  362 (488)
T PRK09088        291 VFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGND---CPAGVPGELLLRGPNLSPGYWRRPQATARAFT--GD--GW  362 (488)
T ss_pred             ccccCCCcccccccCCccccCCCCcEEEEEC-CCCCC---CcCCCceEEEEECCccchhhcCChhhhhhhhc--CC--CC
Confidence            5543211   123557899999999999998 44543   67899999999999999999999999998885  45  89


Q ss_pred             eeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccc
Q 006354          562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASS  626 (649)
Q Consensus       562 ~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~  626 (649)
                      |+|||+|+++++|.+++.||.||+||+ +|++|+|.+||++|.++|.|. +++|++..++..++.
T Consensus       363 ~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~iE~~l~~~~~v~-~~~v~~~~~~~~g~~  425 (488)
T PRK09088        363 FRTGDIARRDADGFFWVVDRKKDMFIS-GGENVYPAEIEAVLADHPGIR-ECAVVGMADAQWGEV  425 (488)
T ss_pred             eeecceEEEcCCCcEEEeccccceEEe-CCEEECHHHHHHHHHhCCCcc-eEEEEeCCCccCCce
Confidence            999999999999999999999999997 599999999999999999999 999999988765543

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=1.9e-56  Score=499.94  Aligned_cols=459  Identities=22%  Similarity=0.317  Sum_probs=358.6

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHH-HCCCCCCCEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAA  159 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~-~~Gv~~gd~V~  159 (649)
                      ..++.++|.++++++|+++|++.            +|+           .+||+||.++++++|++|+ +.|+++||+|+
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~   80 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHS------------FGK-----------TITYREADQLVEQFAAYLLGELQLKKGDRVA   80 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            35899999999999999999986            444           6999999999999999996 68999999999


Q ss_pred             EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCc
Q 006354          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK  239 (649)
Q Consensus       160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~  239 (649)
                      ++++|+++++++++||+++|++++|++|.++.+++.+++++++++++++++.....+..+....+ ...++..+......
T Consensus        81 i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  159 (560)
T PRK08751         81 LMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLG  159 (560)
T ss_pred             EECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcc
Confidence            99999999999999999999999999999999999999999999999999887766665544333 23333321100000


Q ss_pred             ---c-----------CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHH
Q 006354          240 ---D-----------SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA  305 (649)
Q Consensus       240 ---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~  305 (649)
                         .           ...... .......+.+..........+.....++++++++|||||||.||||++||+++...+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~  238 (560)
T PRK08751        160 FPKAALVNFVVKYVKKLVPEY-RINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQ  238 (560)
T ss_pred             cccchhhhhhhhhhhcccccc-CCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHH
Confidence               0           000000 0011233444444333222233445778999999999999999999999999988877


Q ss_pred             HHHhhCC---CCCC-CcEEEEccChHHHHHHHH-HHHHHHhCceEEe-CCcccccccchhhccCccccceeecceEEEec
Q 006354          306 AIKTLIP---NPGR-SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY-GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAV  379 (649)
Q Consensus       306 ~~~~~~~---~~~~-~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~-~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~  379 (649)
                      .....+.   .+.. ++++++.+|++|.+++.. .+.++..|+++++ .++...        ..++..++++++|++.++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~  310 (560)
T PRK08751        239 QAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDM--------PGFVKELKKTRFTAFTGV  310 (560)
T ss_pred             HHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCH--------HHHHHHHHhcceeEecCh
Confidence            6655441   1333 357788899999999865 4556777777665 322211        112333999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCH
Q 006354          380 PAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA  459 (649)
Q Consensus       380 P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~  459 (649)
                      |.++..+.+....                                               .....++||.+++||+++++
T Consensus       311 p~~~~~l~~~~~~-----------------------------------------------~~~~l~~lr~v~~gG~~~~~  343 (560)
T PRK08751        311 NTLFNGLLNTPGF-----------------------------------------------DQIDFSSLKMTLGGGMAVQR  343 (560)
T ss_pred             HHHHHHHHcCcCc-----------------------------------------------CCcchhhheeeeeCCCCCCH
Confidence            9999887652100                                               00011379999999999999


Q ss_pred             HHHHHHHhhcCCccccccCcccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcccccc
Q 006354          460 DSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT  538 (649)
Q Consensus       460 ~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~  538 (649)
                      ++.+.|++.+++++++.||+||++..++..... ....+++|.|+++++++++| +++..   ++.|..|||+|+|+.++
T Consensus       344 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~~~~~~  419 (560)
T PRK08751        344 SVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTV---LAIGEIGELCIKGPQVM  419 (560)
T ss_pred             HHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEEC-CCCCC---CCCCCceEEEEecCccc
Confidence            999999998899999999999998776655432 23457899999999999999 55544   67889999999999999


Q ss_pred             ccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEec
Q 006354          539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRN  618 (649)
Q Consensus       539 ~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~  618 (649)
                      .||+++++.|++.|.  .+  |||+|||+|+++++|++++.||.||+||+ +|++|+|.+||++|..||+|. +|+|++.
T Consensus       420 ~gy~~~~~~~~~~~~--~~--g~~~TGD~~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~-~~~v~~~  493 (560)
T PRK08751        420 KGYWKRPEETAKVMD--AD--GWLHTGDIARMDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVL-EVAAVGV  493 (560)
T ss_pred             hhhcCChhhhhhccc--cC--CCccccceEEEcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCee-eeEEEec
Confidence            999999999998885  55  89999999999999999999999999998 599999999999999999999 9999999


Q ss_pred             CCCCcccchhh
Q 006354          619 GPMKLASSTKI  629 (649)
Q Consensus       619 ~~~~~~~~~~~  629 (649)
                      ++...++.+.+
T Consensus       494 ~~~~~ge~~~~  504 (560)
T PRK08751        494 PDEKSGEIVKV  504 (560)
T ss_pred             CCCCCCceEEE
Confidence            98876654443

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.2e-56  Score=492.97  Aligned_cols=426  Identities=19%  Similarity=0.213  Sum_probs=341.2

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..++.+.|.++++++|+++|+..            +++           .+||+||.++++++|++|++.|+++||+|++
T Consensus        34 ~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i   90 (516)
T PRK13383         34 GTNPYTLLAVTAARWPGRTAIID------------DDG-----------ALSYRELQRATESLARRLTRDGVAPGRAVGV   90 (516)
T ss_pred             CCcHHHHHHHHHHHCCCCcEEEe------------CCC-----------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            47899999999999999999975            332           5999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|++++++++|||+++|++++|+++.++.+++.+++++++++++++++...+.+.....      .++.++....   
T Consensus        91 ~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~~~---  161 (516)
T PRK13383         91 MCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD------AVAVIDPATA---  161 (516)
T ss_pred             ECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc------ceEEeccchh---
Confidence            9999999999999999999999999999999999999999999999999887666544321      1222211000   


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHH--HHHHHhhCCCCCCCc
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT--AAAIKTLIPNPGRSD  318 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~--~~~~~~~~~~~~~~d  318 (649)
                                      ...    ..  ...+...++.++|+|||||||.||||++||......  .......+ .+..+|
T Consensus       162 ----------------~~~----~~--~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d  218 (516)
T PRK13383        162 ----------------GAE----ES--GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-RLRTGS  218 (516)
T ss_pred             ----------------hhh----cC--CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-ccCCCC
Confidence                            000    00  011123456789999999999999999999843211  12223334 778899


Q ss_pred             EEEEccChHHHHHHHHHHHHHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHH
Q 006354          319 VYLAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE  395 (649)
Q Consensus       319 ~~l~~~pl~h~~~~~~~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  395 (649)
                      +++..+|++|.+++...+.++..|+++++   +++..+.+.           ++++++|.+.++|.++..+.........
T Consensus       219 ~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~  287 (516)
T PRK13383        219 RISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAALAQ-----------ASLHRADAFTAVPVVLARILELPPRVRA  287 (516)
T ss_pred             eEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEecHHHHHHHHhccccccc
Confidence            99999999999999888888999999987   333333333           8999999999999999888653211000


Q ss_pred             hhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcccc
Q 006354          396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ  475 (649)
Q Consensus       396 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~  475 (649)
                                                                   ....+++|.+++||+++++++.+.|.+.++.++++
T Consensus       288 ---------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~  322 (516)
T PRK13383        288 ---------------------------------------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYN  322 (516)
T ss_pred             ---------------------------------------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhh
Confidence                                                         00114899999999999999999999999999999


Q ss_pred             ccCcccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhcc
Q 006354          476 AYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV  554 (649)
Q Consensus       476 ~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~  554 (649)
                      .||+||++..+...... ....+++|+|+|+++++|+| +++..   +++|+.|||+|+|+.++.||++++.   +.+  
T Consensus       323 ~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~--  393 (516)
T PRK13383        323 GYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILD-RNNRP---VGPRVTGRIFVGGELAGTRYTDGGG---KAV--  393 (516)
T ss_pred             cccccccccceeccccccccCCCcccCCCCCcEEEEEC-CCCCC---CCCCCceEEEEecCcccccccCCch---hhe--
Confidence            99999998665544322 23457899999999999999 44443   6789999999999999999998754   223  


Q ss_pred             CCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhh
Q 006354          555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQ  631 (649)
Q Consensus       555 ~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~  631 (649)
                       .+  |||+|||+|++|++|++++.||.||+||+ +|++|+|.+||++|.+||.|. +++|++..+...++.+.++.
T Consensus       394 -~~--g~~~TGDl~~~d~~G~l~i~GR~~~~i~~-~G~~v~~~eiE~~l~~~~~v~-~~~vv~~~~~~~g~~~~~~v  465 (516)
T PRK13383        394 -VD--GMTSTGDMGYLDNAGRLFIVGREDDMIIS-GGENVYPRAVENALAAHPAVA-DNAVIGVPDERFGHRLAAFV  465 (516)
T ss_pred             -ec--CceecceeEEEcCCccEEEeccccceEEE-CCEEECHHHHHHHHHhCCCee-EEEEEeccccccCceEEEEE
Confidence             45  89999999999999999999999999998 599999999999999999999 99999998887765554443

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-56  Score=492.10  Aligned_cols=434  Identities=20%  Similarity=0.241  Sum_probs=336.8

Q ss_pred             HHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHH
Q 006354           90 QSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF  169 (649)
Q Consensus        90 ~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~v  169 (649)
                      .+|+++|+++|+.+.+          +|+           .+||+||.++++++|+.|.++|+++||+|+++++|+++++
T Consensus         5 ~~a~~~p~~~a~~~~~----------~~~-----------~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~   63 (501)
T PRK13390          5 THAQIAPDRPAVIVAE----------TGE-----------QVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEAL   63 (501)
T ss_pred             hhhhhCCCCcEEEecC----------CCe-----------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence            4678899999997631          233           6999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCCC
Q 006354          170 IAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISN  249 (649)
Q Consensus       170 va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~  249 (649)
                      ++++||+++|++++|+++.++++++.++++++++++++++.............   ....+.+....             
T Consensus        64 ~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~-------------  127 (501)
T PRK13390         64 VVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGAD---LPLRLSFGGEI-------------  127 (501)
T ss_pred             HHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhc---cceEEEecCcc-------------
Confidence            99999999999999999999999999999999999999987654333222111   11122221110             


Q ss_pred             ceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEe--chHHHHHHH----HHHHhhCCCCCCCcEEEEc
Q 006354          250 WTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI--THGNIVATA----AAIKTLIPNPGRSDVYLAY  323 (649)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~--th~~l~~~~----~~~~~~~~~~~~~d~~l~~  323 (649)
                      -...++++......     +.....+++++|+|||||||.||||++  +|+++....    ......+ .+..+|++++.
T Consensus       128 ~~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  201 (501)
T PRK13390        128 DGFGSFEAALAGAG-----PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-DISESDIYYSS  201 (501)
T ss_pred             cccccHHHHhcccC-----CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-CCCCCCeEEec
Confidence            01122333222110     111122357999999999999999995  566654422    1122344 77889999999


Q ss_pred             cChHHHHHHHHHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcch
Q 006354          324 LPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL  400 (649)
Q Consensus       324 ~pl~h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~  400 (649)
                      +|++|.+++...+..+..|+++++.+   +..+.+.           ++++++|++.++|+++..+........      
T Consensus       202 ~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------  264 (501)
T PRK13390        202 APIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGH-----------VERYRITVTQMVPTMFVRLLKLDADVR------  264 (501)
T ss_pred             ccchhhhHHHHHHHHHhcCceEEEcCCcCHHHHHHH-----------HHHcCCeEEEecHHHHHHHHhccchhc------
Confidence            99999998876566678899998843   3334443           999999999999999988865311100      


Q ss_pred             hHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcc
Q 006354          401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT  480 (649)
Q Consensus       401 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~T  480 (649)
                                                             +....+++|.+++||+++++++.+.+++.++.++++.||+|
T Consensus       265 ---------------------------------------~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~t  305 (501)
T PRK13390        265 ---------------------------------------TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSST  305 (501)
T ss_pred             ---------------------------------------ccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeeccc
Confidence                                                   00011378999999999999999999998899999999999


Q ss_pred             cccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcc
Q 006354          481 ETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM  559 (649)
Q Consensus       481 E~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~  559 (649)
                      |++.++...... ....+++|+|+++ +++|+| +++..   +++|+.|||+|+|++++.||+++|+.|++.|.  +.+.
T Consensus       306 E~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~--~~~~  378 (501)
T PRK13390        306 EAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICD-DDGNE---LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQH--PAHP  378 (501)
T ss_pred             ccCceEEecchhhccCCCCcCCcccc-eEEEEC-CCCCC---CCCCCceEEEEecCCccccccCChhhhHHhhc--cCCC
Confidence            998755443322 2345789999999 799998 55543   78999999999999999999999999999886  3223


Q ss_pred             cceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhh
Q 006354          560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQ  631 (649)
Q Consensus       560 ~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~  631 (649)
                      +|++|||+|++|+||++++.||.||+||+ +|++|+|.+||++|.+||.|. +++|++.+++..++.+.++.
T Consensus       379 ~w~~tGDl~~~~~dg~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~-~~~v~~~~~~~~~e~~~~~v  448 (501)
T PRK13390        379 FWTTVGDLGSVDEDGYLYLADRKSFMIIS-GGVNIYPQETENALTMHPAVH-DVAVIGVPDPEMGEQVKAVI  448 (501)
T ss_pred             ceEEcCceEEECCCCeEEEeeccccceeE-CCeeeCHHHHHHHHHhCCCee-EEEEEeccCcccCceeEEEE
Confidence            89999999999999999999999999997 599999999999999999999 99999999887766554443

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.7e-56  Score=496.99  Aligned_cols=460  Identities=25%  Similarity=0.332  Sum_probs=351.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .++.++|++.++++|+++|+.+            +++           .+||+||.+++.++|++|.+.|+++||+|+++
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~   80 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHF------------LGK-----------DITFSVFHDKVKRFANYLQKLGVEKGDRVAIM   80 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEe------------cCe-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            6899999999999999999986            343           69999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCC-C--
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS-E--  238 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~-~--  238 (649)
                      ++|+++++++++||+++|++++|++|.++.+++.++++.++++++++++.....+....... ....++....... .  
T Consensus        81 ~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  159 (563)
T PRK06710         81 LPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSAT-KIEHVIVTRIADFLPFP  159 (563)
T ss_pred             CCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhh-ccceeEEeccccccccc
Confidence            99999999999999999999999999999999999999999999999887655544332211 1222222110000 0  


Q ss_pred             ccC-----------CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHH
Q 006354          239 KDS-----------GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI  307 (649)
Q Consensus       239 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~  307 (649)
                      ...           .+...........+..+.... ...........+++++++|||||||.||||.+||++++......
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~  238 (563)
T PRK06710        160 KNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMG  238 (563)
T ss_pred             cccccchhhcccccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHH
Confidence            000           000000000001122221111 11111112235789999999999999999999999998654443


Q ss_pred             HhhCCCC-CCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHH
Q 006354          308 KTLIPNP-GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR  385 (649)
Q Consensus       308 ~~~~~~~-~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~  385 (649)
                      ...+... ..++++++.+|++|.+++.. ++.++..|+++++.++...        ..++..++++++|++.++|+++..
T Consensus       239 ~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~~  310 (563)
T PRK06710        239 VQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDM--------KMVFEAIKKHKVTLFPGAPTIYIA  310 (563)
T ss_pred             HhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCH--------HHHHHHHHHcCCeEEeccHHHHHH
Confidence            3322133 34568899999999998865 5568899999988543211        122333999999999999999998


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHH
Q 006354          386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI  465 (649)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~  465 (649)
                      +.......                                               ....+++|.+++||+++++++.+++
T Consensus       311 l~~~~~~~-----------------------------------------------~~~~~~lr~v~~gg~~~~~~~~~~~  343 (563)
T PRK06710        311 LLNSPLLK-----------------------------------------------EYDISSIRACISGSAPLPVEVQEKF  343 (563)
T ss_pred             HHcCCccc-----------------------------------------------cCChhhhhheeeCCCcCCHHHHHHH
Confidence            76521100                                               0001378999999999999999999


Q ss_pred             HhhcCCccccccCcccccccccccCC-CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCC
Q 006354          466 NICMGAPIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN  544 (649)
Q Consensus       466 ~~~~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~  544 (649)
                      ++.+++++++.||+||++.++..... .....+++|+|++++.+++++++++..   ++.|+.|||+++|+.++.||+++
T Consensus       344 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~---~~~g~~Gel~v~g~~~~~gY~~~  420 (563)
T PRK06710        344 ETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEA---LPPGEIGEIVVKGPQIMKGYWNK  420 (563)
T ss_pred             HHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCcc---CCCCCceEEEEecCccchhhhCC
Confidence            99889999999999999876543322 223457899999999999999666543   78899999999999999999999


Q ss_pred             CccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcc
Q 006354          545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLA  624 (649)
Q Consensus       545 ~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~  624 (649)
                      ++.|...|   .+  |||+|||+|++++||+++++||.||+||+ +|++|+|.+||++|.+||.|. +++|++.++...+
T Consensus       421 ~~~~~~~~---~~--g~~~TGD~~~~~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~-~~~v~~~~~~~~g  493 (563)
T PRK06710        421 PEETAAVL---QD--GWLHTGDVGYMDEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQ-EVVTIGVPDPYRG  493 (563)
T ss_pred             hHHHhhhc---cc--CcccccceEEEcCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCccee-eEEEEccccCCcC
Confidence            99999888   56  89999999999999999999999999998 599999999999999999999 9999999988777


Q ss_pred             cchhhhh
Q 006354          625 SSTKIFQ  631 (649)
Q Consensus       625 ~~~~~~~  631 (649)
                      +.+.++.
T Consensus       494 ~~~~~~v  500 (563)
T PRK06710        494 ETVKAFV  500 (563)
T ss_pred             ceeEEEE
Confidence            6654443

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6e-56  Score=485.11  Aligned_cols=404  Identities=24%  Similarity=0.289  Sum_probs=330.7

Q ss_pred             HHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHH
Q 006354           91 SCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI  170 (649)
Q Consensus        91 ~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vv  170 (649)
                      .+++.++++|+..            +++           .+||+||.++++++|..|+     ++|+|+++++|++++++
T Consensus         9 ~~~~~~~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~   60 (471)
T PRK07787          9 VAAAADIADAVRI------------GGR-----------VLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVL   60 (471)
T ss_pred             hhcccCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHH
Confidence            3456788999876            444           6999999999999999996     56999999999999999


Q ss_pred             HHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCCCc
Q 006354          171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW  250 (649)
Q Consensus       171 a~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~  250 (649)
                      +++||+++|++++|+++..+.+++.++++++++++++++.+..      ....+.+   .....                
T Consensus        61 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~~~---~~~~~----------------  115 (471)
T PRK07787         61 AVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDD------PAGLPHV---PVRLH----------------  115 (471)
T ss_pred             HHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEecCCcc------cccccce---eeecc----------------
Confidence            9999999999999999999999999999999999999976311      0011110   00000                


Q ss_pred             eEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHH
Q 006354          251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVL  330 (649)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  330 (649)
                       .           ..........++|+++|+|||||||.||||++||+++...+......+ .+.++|++++.+|++|.+
T Consensus       116 -~-----------~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~  182 (471)
T PRK07787        116 -A-----------RSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-QWTADDVLVHGLPLFHVH  182 (471)
T ss_pred             -c-----------cccccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-CCCccceeEeccCCeeec
Confidence             0           000011224578999999999999999999999999999988888888 888999999999999999


Q ss_pred             HHHH-HHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHH
Q 006354          331 ELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFN  406 (649)
Q Consensus       331 ~~~~-~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~  406 (649)
                      ++.. ++.++..|+++++.   ++..+.+.           ++ +++|++.++|.++..+.+.....             
T Consensus       183 g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~-~~~t~~~~~P~~~~~l~~~~~~~-------------  237 (471)
T PRK07787        183 GLVLGVLGPLRIGNRFVHTGRPTPEAYAQA-----------LS-EGGTLYFGVPTVWSRIAADPEAA-------------  237 (471)
T ss_pred             hhHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------Hh-hCceEEEcchHHHHHHHhCcccc-------------
Confidence            9876 77889999999884   33333333           88 99999999999998887521100             


Q ss_pred             HHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccc
Q 006354          407 IGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGS  486 (649)
Q Consensus       407 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~  486 (649)
                                                         ...+++|.+++||+++++++.++|++.++.++++.||+||++...
T Consensus       238 -----------------------------------~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  282 (471)
T PRK07787        238 -----------------------------------RALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITL  282 (471)
T ss_pred             -----------------------------------ccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcce
Confidence                                               001379999999999999999999998899999999999998765


Q ss_pred             cccCCCCCCCCccCCCcccceEEEEecCCCCcccCCC-CC-CccEEEEccccccccccCCCccchhhhccCCCcccceee
Q 006354          487 TFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDK-PM-PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYT  564 (649)
Q Consensus       487 ~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~-~g-~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~T  564 (649)
                      +.........+++|+|+++++++|+| +++..   ++ .| ..|||+++|++++.||+++++.|++.|.  .+  +||+|
T Consensus       283 ~~~~~~~~~~~~vG~~~~g~~~~i~d-~~~~~---~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~--~~--~~~~T  354 (471)
T PRK07787        283 STRADGERRPGWVGLPLAGVETRLVD-EDGGP---VPHDGETVGELQVRGPTLFDGYLNRPDATAAAFT--AD--GWFRT  354 (471)
T ss_pred             ecCCCCcccCCcccccCCCcEEEEEC-CCCCC---CCCCCCCceEEEEECcccchhhcCChhhchhccc--CC--Cceec
Confidence            54444344567899999999999999 44443   33 23 4899999999999999999999999986  56  89999


Q ss_pred             CcEEEEccCCeEEEEecC-CCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhh
Q 006354          565 GDIGQVYPDGCLEIIDRK-KDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIF  630 (649)
Q Consensus       565 GDlg~~~~dG~l~i~GR~-dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~  630 (649)
                      ||+|++++||+++++||+ ||++|. +|++|+|.+||++|.++|.|. +++|++.++...++.+.++
T Consensus       355 GDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~~l~~~~~v~-~~~v~~~~~~~~~~~~~a~  419 (471)
T PRK07787        355 GDVAVVDPDGMHRIVGRESTDLIKS-GGYRIGAGEIETALLGHPGVR-EAAVVGVPDDDLGQRIVAY  419 (471)
T ss_pred             CceEEEcCCCCEEEeCCCCceeEee-CCEEECHHHHHHHHHhCCCcc-eEEEEcccccccCeEEEEE
Confidence            999999999999999996 899997 599999999999999999999 9999999888766555443

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=9.3e-56  Score=488.04  Aligned_cols=424  Identities=19%  Similarity=0.193  Sum_probs=342.9

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 006354           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (649)
Q Consensus        83 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (649)
                      ++.+.|.+.++.+|+++|+..            .++           .+||+||.+++.++|+.|.+.|+++|++|+|++
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~   57 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRY------------QGQ-----------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYG   57 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEc------------CCc-----------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            478899999999999999975            333           699999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCC
Q 006354          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG  242 (649)
Q Consensus       163 ~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~  242 (649)
                      +|+.+++++++||+++|++++|+++.++.+++.++++.++++.++++.+.......       .. ++.+.         
T Consensus        58 ~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~-------~~-~~~~~---------  120 (502)
T TIGR01734        58 HMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG-------TQ-IITLS---------  120 (502)
T ss_pred             CCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC-------Cc-eEEch---------
Confidence            99999999999999999999999999999999999999999999998765332211       01 11110         


Q ss_pred             CCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 006354          243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA  322 (649)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~  322 (649)
                                 ...++..... .........+++.++|+|||||||.||+|+++|+++.+.+.+....+ ....+++++.
T Consensus       121 -----------~~~~~~~~~~-~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~l~  187 (502)
T TIGR01734       121 -----------ALEQAETSGG-PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-PLSEGKQFLN  187 (502)
T ss_pred             -----------HhhhhhhhcC-CccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-CCCCCceEEe
Confidence                       1111111111 11112334678999999999999999999999999999998888877 8889999999


Q ss_pred             ccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhH
Q 006354          323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTK  402 (649)
Q Consensus       323 ~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~  402 (649)
                      .+|++|.+++..++.++..|+++++.++....+.     ..++..++++++|.+.++|.+++.+......          
T Consensus       188 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~----------  252 (502)
T TIGR01734       188 QAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNF-----KLLFEELPKTGLNVWVSTPSFVDMCLLDPNF----------  252 (502)
T ss_pred             ecCceechhHHHHHHHHHCCCEEEEcCHHHhcCH-----HHHHHHHHHcCCeEEEEChhHHHHHHhcccc----------
Confidence            9999999999888899999999998544222221     2223338999999999999998776542110          


Q ss_pred             HHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccCccc
Q 006354          403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTE  481 (649)
Q Consensus       403 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE  481 (649)
                                                           .....++++.++++|+++++++.+.+.+.+ ++++++.||+||
T Consensus       253 -------------------------------------~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE  295 (502)
T TIGR01734       253 -------------------------------------NQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTE  295 (502)
T ss_pred             -------------------------------------ccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCc
Confidence                                                 001124899999999999999999888876 789999999999


Q ss_pred             ccccccccCC-----CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC
Q 006354          482 TCAGSTFSEW-----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE  556 (649)
Q Consensus       482 ~~~~~~~~~~-----~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~  556 (649)
                      ++...+....     ......++|.|.|+++++|+| +++..   +++|+.|||+|+|+.++.||+++++.|.+.|.. .
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~---~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-~  370 (502)
T TIGR01734       296 ATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEP---LPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFS-H  370 (502)
T ss_pred             ceEEEEEEEccccccccCCccccccccCCCEEEEEC-CCCCC---CCCCCeeEEEEccccccccccCCcccchHhhee-C
Confidence            8765443221     122336899999999999999 44432   678999999999999999999999999988742 2


Q ss_pred             CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecC
Q 006354          557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNG  619 (649)
Q Consensus       557 ~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~  619 (649)
                      ++.+||+|||+|++|++ +++++||.+|+||+ +|++|+|.+||++|.++|.|+ +|+|++..
T Consensus       371 ~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~-~~~vv~~~  430 (502)
T TIGR01734       371 EGQPAYRTGDAGTITDG-QLFYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIE-SAVVVPKY  430 (502)
T ss_pred             CCcEEEECCCEEEEECC-EEEEeccccCeEEE-CcEEeCHHHHHHHHHcCCCcc-EEEEEEEE
Confidence            44579999999999966 99999999999997 699999999999999999999 99999954

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.4e-55  Score=529.51  Aligned_cols=443  Identities=19%  Similarity=0.199  Sum_probs=347.4

Q ss_pred             CCCHHHHHHHHHHhCCC-CcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 006354           81 ASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA  159 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~-~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~  159 (649)
                      ..++.+.|+++++++|+ +.|+.+.           ++           +.+||+||.++++++|+.|++ |+++||+|+
T Consensus       630 ~~~~~~~l~~~~~~~~~~~~ai~~~-----------~~-----------~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~  686 (1140)
T PRK06814        630 DRTLFEALIEAAKIHGFKKLAVEDP-----------VN-----------GPLTYRKLLTGAFVLGRKLKK-NTPPGENVG  686 (1140)
T ss_pred             cCCHHHHHHHHHHHcCCCCeEeECC-----------CC-----------CccCHHHHHHHHHHHHHHHHh-cCCCCCeEE
Confidence            46899999999999874 5666421           22           269999999999999999975 999999999


Q ss_pred             EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHH--HHhhccCCCccEEEEecCCCC
Q 006354          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL--SAVSSSLKTIKNVIYFENDGS  237 (649)
Q Consensus       160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l--~~~~~~~~~~~~ii~~~~~~~  237 (649)
                      ++++|+++++++++||+++|++++|+||.++++++.++++++++++++++++..+..  .......+....++.+++...
T Consensus       687 i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  766 (1140)
T PRK06814        687 VMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRA  766 (1140)
T ss_pred             EEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhc
Confidence            999999999999999999999999999999999999999999999999998765432  112222223334454443211


Q ss_pred             CccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCC
Q 006354          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS  317 (649)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  317 (649)
                      ..          .....+.+....... ........++|+++|+|||||||.||||++||+++.+.+......+ .++++
T Consensus       767 ~~----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~  834 (1140)
T PRK06814        767 QI----------GLADKIKGLLAGRFP-LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-DFSPE  834 (1140)
T ss_pred             cC----------ChHHHHHHHhhccCC-ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-CCCCc
Confidence            00          000011111111111 1111235789999999999999999999999999999998888888 88999


Q ss_pred             cEEEEccChHHHHHHHH-HHHHHHhCceEEeCC-cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHH
Q 006354          318 DVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS-TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE  395 (649)
Q Consensus       318 d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~-~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  395 (649)
                      |++++.+|++|.+++.. ++.++..|+++++.+ +...        +...+.++++++|++.++|++++.+.+...    
T Consensus       835 d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~----  902 (1140)
T PRK06814        835 DKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHY--------RIIPELIYDTNATILFGTDTFLNGYARYAH----  902 (1140)
T ss_pred             CEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccH--------HHHHHHHHhcCCEEEEecHHHHHHHHhhcc----
Confidence            99999999999999844 677899999998843 2211        111223889999999999999987754210    


Q ss_pred             hhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcccc
Q 006354          396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ  475 (649)
Q Consensus       396 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~  475 (649)
                                                                   ....+++|.+++||+++++++.+.+.+.+++++++
T Consensus       903 ---------------------------------------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~  937 (1140)
T PRK06814        903 ---------------------------------------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILE  937 (1140)
T ss_pred             ---------------------------------------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEe
Confidence                                                         00114899999999999999999999989999999


Q ss_pred             ccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccC
Q 006354          476 AYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD  555 (649)
Q Consensus       476 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~  555 (649)
                      .||+||++..++.......+.+++|+|+|++++++.+.+        +.++.|||+|+|++++.||+++++.+.  +...
T Consensus       938 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~--------~~~~~Gel~v~g~~~~~gY~~~~~~~~--~~~~ 1007 (1140)
T PRK06814        938 GYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVP--------GIDEGGRLFVRGPNVMLGYLRAENPGV--LEPP 1007 (1140)
T ss_pred             ccccccccceEEecCCCCCCCCcCCccCCCCeEEEeecC--------CCCCceEEEEeCCCcchhhcCCCCCCc--cccC
Confidence            999999988776555444566899999999999998732        135789999999999999999765332  2111


Q ss_pred             CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354          556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       556 ~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                      .+  |||+|||+|++|+||++++.||.||+||+ +|++|+|.|||++|.+||.|. +++|++.+++..++.+.+
T Consensus      1008 ~~--g~~~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~-~~~vv~~~~~~~g~~~~~ 1077 (1140)
T PRK06814       1008 AD--GWYDTGDIVTIDEEGFITIKGRAKRFAKI-AGEMISLAAVEELAAELWPDA-LHAAVSIPDARKGERIIL 1077 (1140)
T ss_pred             CC--CeEecCCEEEECCCCeEEEEecccCeeee-CCEEECHHHHHHHHHhcCCcc-cEEEEEcccCCCCceEEE
Confidence            34  89999999999999999999999999997 599999999999999999999 999999998887765443

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.1e-55  Score=488.28  Aligned_cols=459  Identities=23%  Similarity=0.315  Sum_probs=354.6

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAA  159 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~gd~V~  159 (649)
                      ..++.++|+.+++++|+++|+..            +++           .+||+||.++++++|.+|++ .|+++|++|+
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~   78 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFIN------------MGE-----------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVA   78 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEE------------CCc-----------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            35899999999999999999985            343           69999999999999999984 8999999999


Q ss_pred             EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCc
Q 006354          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK  239 (649)
Q Consensus       160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~  239 (649)
                      ++++|+++++++++||+++|++++|++|.++++++.++++.+++++++++.+..+.+.++.... ..+.++.........
T Consensus        79 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  157 (560)
T PRK08974         79 LMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-PVKHVILTRMGDQLS  157 (560)
T ss_pred             EECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-CcceEEEeccccccc
Confidence            9999999999999999999999999999999999999999999999999887666555543322 223333221110000


Q ss_pred             --cCCC--------CCC-CC--CceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHH
Q 006354          240 --DSGV--------SGG-IS--NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA  306 (649)
Q Consensus       240 --~~~~--------~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~  306 (649)
                        ....        ... +.  .....++.+....+...........++++++|+|||||||.||+|.++|++++..+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~  237 (560)
T PRK08974        158 TAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQ  237 (560)
T ss_pred             ccccccccchhhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHH
Confidence              0000        000 00  0011222232222221111123356789999999999999999999999999887765


Q ss_pred             HHhhCC--CCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeC-CcccccccchhhccCccccceeecceEEEechHH
Q 006354          307 IKTLIP--NPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAI  382 (649)
Q Consensus       307 ~~~~~~--~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~-~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~  382 (649)
                      ....+.  ....++.++..+|++|.+++.. .+.++..|+++++. ++...        ..++..++++++|.+.++|.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~p~~  309 (560)
T PRK08974        238 AKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDI--------PGFVKELKKYPFTAITGVNTL  309 (560)
T ss_pred             HHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCH--------HHHHHHHHhcCcceEcCcHHH
Confidence            544331  2344678889999999998755 55678889887763 22211        112333899999999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHH
Q 006354          383 FDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQ  462 (649)
Q Consensus       383 l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~  462 (649)
                      ++.+......                                               .....+++|.+++||+++++.+.
T Consensus       310 ~~~l~~~~~~-----------------------------------------------~~~~~~~lr~~~~gg~~~~~~~~  342 (560)
T PRK08974        310 FNALLNNEEF-----------------------------------------------QELDFSSLKLSVGGGMAVQQAVA  342 (560)
T ss_pred             HHHHHhCcCc-----------------------------------------------ccCCccceeEEEecCccCCHHHH
Confidence            9988653100                                               00011479999999999999999


Q ss_pred             HHHHhhcCCccccccCcccccccccccCCCC-CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccc
Q 006354          463 RFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY  541 (649)
Q Consensus       463 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY  541 (649)
                      +.|++.+|+++++.||+||++.+++...... ...+++|.|+|+++++|+| +++..   ++.|+.|||+|+|+.++.||
T Consensus       343 ~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~g~~Gel~v~g~~~~~gy  418 (560)
T PRK08974        343 ERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNE---VPPGEPGELWVKGPQVMLGY  418 (560)
T ss_pred             HHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEEC-CCCCC---CCCCCceEEEEecCCcchhh
Confidence            9999988999999999999987776554332 3357899999999999998 45543   67899999999999999999


Q ss_pred             cCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCC
Q 006354          542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPM  621 (649)
Q Consensus       542 ~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~  621 (649)
                      +++++.+++.|   .+  |||+|||+|+++++|.++++||.||+|++. |++|+|.+||++|.+||+|. +++|++.++.
T Consensus       419 ~~~~~~~~~~~---~~--g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~-G~~i~~~~IE~~l~~~~~v~-~~~v~~~~~~  491 (560)
T PRK08974        419 WQRPEATDEVI---KD--GWLATGDIAVMDEEGFLRIVDRKKDMILVS-GFNVYPNEIEDVVMLHPKVL-EVAAVGVPSE  491 (560)
T ss_pred             cCChhhhhhhh---hc--CCcccCCEEEEcCCceEEEEecccceEEeC-CEEECHHHHHHHHHhCCCee-EEEEEeeecC
Confidence            99999999888   56  899999999999999999999999999985 99999999999999999999 9999999887


Q ss_pred             Ccccchhh
Q 006354          622 KLASSTKI  629 (649)
Q Consensus       622 ~~~~~~~~  629 (649)
                      ..++.+.+
T Consensus       492 ~~g~~~~~  499 (560)
T PRK08974        492 VSGEAVKI  499 (560)
T ss_pred             CcceEEEE
Confidence            76654444

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-55  Score=494.73  Aligned_cols=451  Identities=20%  Similarity=0.256  Sum_probs=330.6

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 006354           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (649)
Q Consensus        83 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (649)
                      ++.++|+++++.+|+++|+.+.+.         ++. +    .+.++.+||+||.++++++|++|+++| .+||+|+|++
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~~~---------~~~-~----~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~   66 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFIDY---------EQD-P----AGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILA   66 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEEcc---------CCC-C----CCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEc
Confidence            688999999999999999986421         110 0    122357999999999999999999999 6899999999


Q ss_pred             cCCHHHHHHHHHHHhcCCEEEEecC---CCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCC--CccEEEEecCCCC
Q 006354          163 ETCVEWFIAFQGCFRQSITVVTIYS---SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK--TIKNVIYFENDGS  237 (649)
Q Consensus       163 ~~~~~~vva~lA~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~--~~~~ii~~~~~~~  237 (649)
                      +|++++++++|||+++|++++|+++   ..+.+++.++|+++++++++++++..+.+........  ....++.++..  
T Consensus        67 ~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  144 (578)
T PRK05850         67 PQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL--  144 (578)
T ss_pred             CCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc--
Confidence            9999999999999999999999997   4578999999999999999999887776654322111  11112211110  


Q ss_pred             CccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCC----
Q 006354          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN----  313 (649)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~----  313 (649)
                                         ++   ............++++++|+|||||||.||||++||+++++.+......+..    
T Consensus       145 -------------------~~---~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~  202 (578)
T PRK05850        145 -------------------DL---DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGG  202 (578)
T ss_pred             -------------------cc---ccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhcccccc
Confidence                               00   0000011223467899999999999999999999999999887665443201    


Q ss_pred             -CCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHH
Q 006354          314 -PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (649)
Q Consensus       314 -~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  391 (649)
                       ...++++++++|++|.+++.. ++.+++.|+++++.++..+...    +..+...+++++++++ .+|..+..+.....
T Consensus       203 ~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~----p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~  277 (578)
T PRK05850        203 VPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQR----PARWMQLLASNPHAFS-AAPNFAFELAVRKT  277 (578)
T ss_pred             CCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHC----HHHHHHHHHHcCCeEE-eCCcHHHHHHHHhc
Confidence             356789999999999999865 7788999999998654322111    1223333888999865 56665443322110


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC-
Q 006354          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG-  470 (649)
Q Consensus       392 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~-  470 (649)
                      ....                                           ......+++|.+++||+++++++.+.|.+.++ 
T Consensus       278 ~~~~-------------------------------------------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~  314 (578)
T PRK05850        278 SDDD-------------------------------------------MAGLDLGGVLGIISGSERVHPATLKRFADRFAP  314 (578)
T ss_pred             chhh-------------------------------------------hcCcchhhheeEEECcCCCCHHHHHHHHHHHHh
Confidence            0000                                           00001137999999999999999988887762 


Q ss_pred             -----CccccccCcccccccccccCCCCC-------------------------CCCccCCCcccceEEEEecCCCCccc
Q 006354          471 -----APIGQAYGLTETCAGSTFSEWDDP-------------------------SVGRVGPPVPCCYIKLVSWDEGGYKT  520 (649)
Q Consensus       471 -----~~l~~~YG~TE~~~~~~~~~~~~~-------------------------~~~~vG~p~p~~~v~i~d~~~~~~~~  520 (649)
                           ..+++.||+||++..+........                         ...++|.|. +.+++|+|++++..  
T Consensus       315 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~--  391 (578)
T PRK05850        315 FNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIE--  391 (578)
T ss_pred             cCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcC--
Confidence                 368999999998765443221100                         012345554 57899999655543  


Q ss_pred             CCCCCCccEEEEccccccccccCCCccchhhhccC---C----CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCcee
Q 006354          521 SDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD---E----RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY  593 (649)
Q Consensus       521 ~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~---~----~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~  593 (649)
                       +++|+.|||+|+|+.++.||+++|+.|++.|..+   +    ...+||+|||+|+++ ||+++++||+||+||+ +|++
T Consensus       392 -~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~  468 (578)
T PRK05850        392 -CPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRN  468 (578)
T ss_pred             -CCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCee
Confidence             7899999999999999999999999999999521   0    012799999999998 9999999999999998 5999


Q ss_pred             eeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354          594 ISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       594 v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                      |+|.|||++|.+||.+.  ++|++.++. .++.+.+
T Consensus       469 i~p~eIE~~l~~~~~~~--~~v~~v~~~-~~~~~~a  501 (578)
T PRK05850        469 HYPDDIEATIQEITGGR--VAAISVPDD-GTEKLVA  501 (578)
T ss_pred             cCHHHHHHHHHHhcCCc--EEEEEecCC-CceEEEE
Confidence            99999999999999954  788888776 3433333

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-54  Score=483.51  Aligned_cols=450  Identities=21%  Similarity=0.221  Sum_probs=346.6

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .+..+.|++.++++|+++|+.+            ++.           .+||+||.++++++|++|.+.|+++||+|+|+
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~   74 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIH------------GDR-----------RRTWAETYARCRRLASALARRGIGRGDTVAVL   74 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEE------------CCe-----------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            5888999999999999999976            333           59999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++.++++.+....+.+.....+..+. +.++......  
T Consensus        75 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--  151 (545)
T PRK08162         75 LPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKP-LVIDVDDPEY--  151 (545)
T ss_pred             CCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCce-EEEecCcccc--
Confidence            9999999999999999999999999999999999999999999999999887777665444333222 2222111100  


Q ss_pred             CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 006354          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  321 (649)
                         .....+...+++++..............+.+++++|+|||||||.||||+++|+++..........+ .+..+++++
T Consensus       152 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-~~~~~~~~l  227 (545)
T PRK08162        152 ---PGGRFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-GMPKHPVYL  227 (545)
T ss_pred             ---ccCCCcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCCCeeE
Confidence               0001123345666654322211111233456899999999999999999999999877766665566 778889999


Q ss_pred             EccChHHHHHHHHHHHHHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhc
Q 006354          322 AYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (649)
Q Consensus       322 ~~~pl~h~~~~~~~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~  398 (649)
                      +.+|++|..++...+...+.|++.++   .++..+.+.           ++++++|++.++|.++..+.+.......   
T Consensus       228 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~P~~~~~l~~~~~~~~~---  293 (545)
T PRK08162        228 WTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLIFDL-----------IREHGVTHYCGAPIVLSALINAPAEWRA---  293 (545)
T ss_pred             eccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHHHHH-----------HHHcCCeEEEechHHHHHHHhCcccccc---
Confidence            99999999998765544445555444   344444444           9999999999999999988753111000   


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccC
Q 006354          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (649)
Q Consensus       399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (649)
                                                                  ...+++.++++|+++++++.+.++.. ++++++.||
T Consensus       294 --------------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG  328 (545)
T PRK08162        294 --------------------------------------------GIDHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYG  328 (545)
T ss_pred             --------------------------------------------CCccceEEEECCCCCCHHHHHHHHHh-CCceeeccc
Confidence                                                        00145567889999999999988874 899999999


Q ss_pred             cccccccccccCCC-----------CCCCCccCCCcc-cceEEEEecCCCCcccCCCC-C-CccEEEEccccccccccCC
Q 006354          479 LTETCAGSTFSEWD-----------DPSVGRVGPPVP-CCYIKLVSWDEGGYKTSDKP-M-PRGEIVVGGFNVTAGYFNN  544 (649)
Q Consensus       479 ~TE~~~~~~~~~~~-----------~~~~~~vG~p~p-~~~v~i~d~~~~~~~~~~~~-g-~~GEl~v~g~~v~~gY~~~  544 (649)
                      +||+++.++.+...           ....+++|.+++ +..++|+|++++..   ++. | +.|||+|+|+.++.||+++
T Consensus       329 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~---~~~~g~~~Gel~v~g~~~~~gY~~~  405 (545)
T PRK08162        329 LTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQP---VPADGETIGEIMFRGNIVMKGYLKN  405 (545)
T ss_pred             ccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcc---cCCCCCceeEEEEecCcchhhhcCC
Confidence            99986544433211           011245677665 34678888555543   333 3 4799999999999999999


Q ss_pred             CccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcc
Q 006354          545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLA  624 (649)
Q Consensus       545 ~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~  624 (649)
                      ++.|.+.|   .+  +||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|. +++|++.+++..+
T Consensus       406 ~~~~~~~~---~~--g~~~TGDl~~~d~dg~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~-~~~vv~~~~~~~~  478 (545)
T PRK08162        406 PKATEEAF---AG--GWFHTGDLAVLHPDGYIKIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVL-VAAVVAKPDPKWG  478 (545)
T ss_pred             hhhhHHHh---hC--CCcccCceEEEcCCccEEEEecccceEEe-CCEEECHHHHHHHHHhCCccc-EEEEEeeeccccC
Confidence            99999999   56  89999999999999999999999999997 599999999999999999999 9999998887666


Q ss_pred             cchhhh
Q 006354          625 SSTKIF  630 (649)
Q Consensus       625 ~~~~~~  630 (649)
                      +.+.++
T Consensus       479 ~~~~~~  484 (545)
T PRK08162        479 EVPCAF  484 (545)
T ss_pred             ceEEEE
Confidence            554443

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-55  Score=493.33  Aligned_cols=443  Identities=21%  Similarity=0.268  Sum_probs=339.9

Q ss_pred             ccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCC
Q 006354           75 EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNV  154 (649)
Q Consensus        75 ~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~  154 (649)
                      .++++...++.++|+..++++|+..++..            +++        .++.+||+||..+++++|++|+++|+++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--------~~~~~Ty~eL~~~~~~~a~~L~~~gi~~   73 (579)
T PRK09192         14 PRRYADFPTLVEALDYAALGEAGMNFYDR------------RGQ--------LEEALPYQTLRARAEAGARRLLALGLKP   73 (579)
T ss_pred             cccccchhhHHHHHHHhhccCCceEEEec------------CCC--------EEEEecHHHHHHHHHHHHHHHHHhCCCC
Confidence            45566778999999999999887655421            221        2357999999999999999999999999


Q ss_pred             CCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCC-------HHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCcc
Q 006354          155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG-------EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIK  227 (649)
Q Consensus       155 gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~  227 (649)
                      ||+|+++++|+++++++++||+++|++++|+++.++       .+++.++++.++++++|++....+.+.+.....+   
T Consensus        74 gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~---  150 (579)
T PRK09192         74 GDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP---  150 (579)
T ss_pred             CCEEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc---
Confidence            999999999999999999999999999999987543       6899999999999999999887766655432211   


Q ss_pred             EEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHH
Q 006354          228 NVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI  307 (649)
Q Consensus       228 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~  307 (649)
                      .+                     ...++.++...... ........++++++|+|||||||.||||+++|++++..+...
T Consensus       151 ~~---------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~  208 (579)
T PRK09192        151 LL---------------------HVLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAI  208 (579)
T ss_pred             cc---------------------ceeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHH
Confidence            00                     11223332222111 111233467899999999999999999999999999988887


Q ss_pred             Hh-hCCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHH
Q 006354          308 KT-LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR  385 (649)
Q Consensus       308 ~~-~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~  385 (649)
                      .. .+ ++.++|++++++|++|.+++.. ++.++..|+++.+.....+...    +..++..+.++++++++..|..+..
T Consensus       209 ~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~~~~~~l  283 (579)
T PRK09192        209 SHDGL-KVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARR----PLQWLDLISRNRGTISYSPPFGYEL  283 (579)
T ss_pred             Hhhcc-cCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHC----HHHHHHHHHhcCcEEEeCCcHHHHH
Confidence            77 66 8899999999999999999876 4567888998876432211111    1223333899999987765555544


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHH
Q 006354          386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI  465 (649)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~  465 (649)
                      +.......                                            ..+....+++|.+++||+++++++.+.+
T Consensus       284 ~~~~~~~~--------------------------------------------~~~~~~l~~lr~~~~gG~~l~~~~~~~~  319 (579)
T PRK09192        284 CARRVNSK--------------------------------------------DLAELDLSCWRVAGIGADMIRPDVLHQF  319 (579)
T ss_pred             HHHhhccc--------------------------------------------cccccchhhhheeEecCccCCHHHHHHH
Confidence            43211000                                            0000112479999999999999999888


Q ss_pred             HhhcC------CccccccCcccccccccccCCCC----------------------------CCCCccCCCcccceEEEE
Q 006354          466 NICMG------APIGQAYGLTETCAGSTFSEWDD----------------------------PSVGRVGPPVPCCYIKLV  511 (649)
Q Consensus       466 ~~~~~------~~l~~~YG~TE~~~~~~~~~~~~----------------------------~~~~~vG~p~p~~~v~i~  511 (649)
                      .+.+.      ..+++.||+||++..++......                            ...+++|+|+|+++++|+
T Consensus       320 ~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~  399 (579)
T PRK09192        320 AEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIR  399 (579)
T ss_pred             HHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEE
Confidence            87763      35899999999987665443211                            012579999999999999


Q ss_pred             ecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCc
Q 006354          512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHG  591 (649)
Q Consensus       512 d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G  591 (649)
                      | +++..   ++.|+.|||+|+|++++.||+++ +.+.+.|.  .+  +||+|||+|++ ++|+++++||.||+||+ +|
T Consensus       400 d-~~~~~---~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~--~d--gw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G  468 (579)
T PRK09192        400 N-EAGMP---LPERVVGHICVRGPSLMSGYFRD-EESQDVLA--AD--GWLDTGDLGYL-LDGYLYITGRAKDLIII-NG  468 (579)
T ss_pred             C-CCCCC---CCCCCEEEEEecCCchhhhhcCC-cccccccc--CC--ceeeccceeeE-ECCEEEEEeccccEEEE-CC
Confidence            9 44443   67889999999999999999999 66777765  56  89999999999 89999999999999998 59


Q ss_pred             eeeeCChhhhHhccCccccc-ceEEEecCCCC
Q 006354          592 EYISLGKIPSTTTVLPLLFH-HIRLWRNGPMK  622 (649)
Q Consensus       592 ~~v~~~eIE~~l~~~p~V~~-~~~V~g~~~~~  622 (649)
                      ++|+|.|||++|.+||+|.. +|+|++..++.
T Consensus       469 ~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~  500 (579)
T PRK09192        469 RNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN  500 (579)
T ss_pred             CccCHHHHHHHHHhcCCccCCcEEEEEeccCC
Confidence            99999999999999999962 58888888764

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=6.5e-55  Score=481.48  Aligned_cols=428  Identities=19%  Similarity=0.186  Sum_probs=349.0

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .++.++|+++++.+|+++|+..            ++.           .+||+||.++++++|..|.++|+++|++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~------------~~~-----------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~   58 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDY------------LGE-----------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVF   58 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEe------------CCc-----------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            4688999999999999999875            333           69999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+.+++++++||+++|++++|+++.++.+++.++++.+++++++++.+....       ..                 
T Consensus        59 ~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-----------------  114 (503)
T PRK04813         59 GHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE-------IL-----------------  114 (503)
T ss_pred             cCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc-------cc-----------------
Confidence            999999999999999999999999999999999999999999999998764100       00                 


Q ss_pred             CCCCCCCCceEeehHHHHhcC--CCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 006354          242 GVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  319 (649)
                             .+....++++....  ...........++++++++|||||||.||+|.+||+++...+.+....+ .+..+++
T Consensus       115 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~~  186 (503)
T PRK04813        115 -------GIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-ALPEGPQ  186 (503)
T ss_pred             -------CCcEEehHHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-CCCcCce
Confidence                   11222233322211  1111112345678899999999999999999999999999988888888 8899999


Q ss_pred             EEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcc
Q 006354          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~  399 (649)
                      ++..+|++|..++..++.++..|+++++.+.....+     ...+...++++++|++..+|++++.+......       
T Consensus       187 ~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~-----~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~-------  254 (503)
T PRK04813        187 FLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTAN-----FKQLFETLPQLPINVWVSTPSFADMCLLDPSF-------  254 (503)
T ss_pred             eeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcC-----HHHHHHHHHHcCCeEEEeChHHHHHHHHhhcc-------
Confidence            999999999999888888999999998854322222     12233338999999999999999876542110       


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccC
Q 006354          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG  478 (649)
Q Consensus       400 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG  478 (649)
                                                              .....+++|.++++|+++++.+.+++.+.+ ++++++.||
T Consensus       255 ----------------------------------------~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG  294 (503)
T PRK04813        255 ----------------------------------------NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYG  294 (503)
T ss_pred             ----------------------------------------CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcc
Confidence                                                    011124899999999999999999999887 789999999


Q ss_pred             cccccccccccCCC-----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhc
Q 006354          479 LTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK  553 (649)
Q Consensus       479 ~TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~  553 (649)
                      +||++...+.....     .....++|+|.++++++|+| +++..   ++.|+.|||+|+|++++.||+++++.|.+.|.
T Consensus       295 ~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~  370 (503)
T PRK04813        295 PTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTK---LPDGEQGEIVISGPSVSKGYLNNPEKTAEAFF  370 (503)
T ss_pred             cchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCC---CCCCCceEEEEeccccccccCCChhHhHHhhc
Confidence            99987655432221     22346799999999999998 55543   67889999999999999999999999999885


Q ss_pred             cCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcc
Q 006354          554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLA  624 (649)
Q Consensus       554 ~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~  624 (649)
                      . .+|.+||+|||+|++ +||++++.||.||+||+ +|++|+|.+||++|.+||+|. +++|++..+...+
T Consensus       371 ~-~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~-~~~v~~~~~~~~~  437 (503)
T PRK04813        371 T-FDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVE-SAVVVPYNKDHKV  437 (503)
T ss_pred             c-CCCceeEECCceEEe-eCCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcc-eEEEEEeeCCCCc
Confidence            2 244479999999999 89999999999999998 599999999999999999999 9999987665444

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-54  Score=480.06  Aligned_cols=437  Identities=19%  Similarity=0.215  Sum_probs=349.0

Q ss_pred             HHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH
Q 006354           89 EQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW  168 (649)
Q Consensus        89 ~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~  168 (649)
                      ...++++|+++|+.+..          +++           .+||+||.++++++|++|.++|+++|++|+++++|++++
T Consensus         4 ~~~a~~~p~~~a~~~~~----------~~~-----------~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~   62 (511)
T PRK13391          4 GIHAQTTPDKPAVIMAS----------TGE-----------VVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRY   62 (511)
T ss_pred             hhhHhhCCCceEEEecC----------CCC-----------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            46788999999998631          233           699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCC
Q 006354          169 FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS  248 (649)
Q Consensus       169 vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~  248 (649)
                      +++++||+++|++++|+++.++.+++.+++++++++.++++......+..+....+.....+.+......          
T Consensus        63 ~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  132 (511)
T PRK13391         63 LEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL----------  132 (511)
T ss_pred             HHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCC----------
Confidence            9999999999999999999999999999999999999999998877776665555555555554432110          


Q ss_pred             CceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEe--chHHHHHH---HHHHHhhCCCCCCCcEEEEc
Q 006354          249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI--THGNIVAT---AAAIKTLIPNPGRSDVYLAY  323 (649)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~--th~~l~~~---~~~~~~~~~~~~~~d~~l~~  323 (649)
                       .....+++.....   +. ....+.++.++++|||||||.||||++  +|.++...   .......+ .+.+++++++.
T Consensus       133 -~~~~~~~~~~~~~---~~-~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~  206 (511)
T PRK13391        133 -EGFVGYAEAVAGL---PA-TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-GFRSDMVYLSP  206 (511)
T ss_pred             -cccccHHHHhcCC---CC-CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-CCCCCCeEEEc
Confidence             1122333332211   11 112234567899999999999999995  56665432   23334455 77888999999


Q ss_pred             cChHHHHHHHHHHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcch
Q 006354          324 LPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL  400 (649)
Q Consensus       324 ~pl~h~~~~~~~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~  400 (649)
                      +|++|.+++...+.++..|+++++.   ++..+.+.           ++++++|++.++|+++..+........      
T Consensus       207 ~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~~~------  269 (511)
T PRK13391        207 APLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLAL-----------IEEYGVTHTQLVPTMFSRMLKLPEEVR------  269 (511)
T ss_pred             CCHHHHHHHHHHHHHHHcCceEEECCCCCHHHHHHH-----------HHHhCCeEEEehHHHHHHHHhCchhhc------
Confidence            9999999988888899999999984   33444444           999999999999999988764211100      


Q ss_pred             hHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcc
Q 006354          401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT  480 (649)
Q Consensus       401 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~T  480 (649)
                                                             ++...+++|.+++||+++++++.+.+++.+|..+++.||+|
T Consensus       270 ---------------------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~t  310 (511)
T PRK13391        270 ---------------------------------------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAAT  310 (511)
T ss_pred             ---------------------------------------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccc
Confidence                                                   00112489999999999999999999998899999999999


Q ss_pred             cccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcc
Q 006354          481 ETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM  559 (649)
Q Consensus       481 E~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~  559 (649)
                      |++.++...... ....+++|+|+++ .++|+| +++..   ++.|+.|||+++|+ ++.||+++++.+++.|..+ +  
T Consensus       311 E~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d-~~~~~---~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~-~--  381 (511)
T PRK13391        311 EGLGFTACDSEEWLAHPGTVGRAMFG-DLHILD-DDGAE---LPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPD-G--  381 (511)
T ss_pred             cccceEEecCccccccCCCcCCcccc-eEEEEC-CCCCC---CCCCCceEEEEecC-cceEEcCChhHhHHhhccC-C--
Confidence            998765543322 2345799999999 689998 55543   57889999999999 8999999999999988632 3  


Q ss_pred             cceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354          560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       560 ~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                      +||+|||+|++++||.+++.||.||++|+ +|++|+|.+||++|.+||.|. +|+|++.++...++.+.+
T Consensus       382 ~w~~TGD~g~~~~~g~l~~~gR~~~~i~~-~G~~v~~~eie~~l~~~~~v~-~~~v~~~~~~~~g~~~~~  449 (511)
T PRK13391        382 TWSTVGDIGYVDEDGYLYLTDRAAFMIIS-GGVNIYPQEAENLLITHPKVA-DAAVFGVPNEDLGEEVKA  449 (511)
T ss_pred             CEEecCCEEEECCCccEEEeccCCCEEEe-CCEEECHHHHHHHHHhCCCcc-eEEEEecCCcccCceeEE
Confidence            89999999999999999999999999997 599999999999999999999 999999988877655433

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-55  Score=514.71  Aligned_cols=461  Identities=17%  Similarity=0.183  Sum_probs=341.0

Q ss_pred             cccccccccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCcccee
Q 006354           43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK  122 (649)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~  122 (649)
                      |+..   ++.+.+++..+..++.++.....      ....|+.++|+++++++||++|+.+            +++    
T Consensus       417 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~sl~~ll~~~a~~~pd~~Al~~------------~~~----  471 (994)
T PRK07868        417 ANRS---VRTLAVETARTLPRLARLGQIND------HTRISLGRIIAEQARDAPKGEFLLF------------DGR----  471 (994)
T ss_pred             hhhh---hHHHHHHHHHhhhhHHHhhhcCC------CCCccHHHHHHHHHHHCCCCeEEEe------------CCc----
Confidence            5555   77888888999988866655221      3446899999999999999999986            443    


Q ss_pred             ecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcC
Q 006354          123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ  202 (649)
Q Consensus       123 ~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~  202 (649)
                             .+||+||.++++++|++|+++|+++||+|+|+++|+++++++++||+++|++++|++|.   +++.+++++++
T Consensus       472 -------~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~  541 (994)
T PRK07868        472 -------VHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGG  541 (994)
T ss_pred             -------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccC
Confidence                   69999999999999999999999999999999999999999999999999999999985   68999999999


Q ss_pred             ceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCC--CCCCCCCCCCeEEE
Q 006354          203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--VDPSLPSQNGVAVI  280 (649)
Q Consensus       203 ~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i  280 (649)
                      ++++|++.+..+.+...      ...+++++......    ...+.......+++........+  ..+.+..++|+|+|
T Consensus       542 ~~~li~~~~~~~~~~~~------~~~iiv~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I  611 (994)
T PRK07868        542 VTEIITDPTNLEAARQL------PGRVLVLGGGESRD----LDLPDDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFI  611 (994)
T ss_pred             CeEEEEChHHHHHHHhc------CceEEEecCCcccc----ccCCcchhhhhhhhcCcccccCCcccCCCCCCCCccEEE
Confidence            99999998776655432      23455554321100    00000001111221111100000  01112236899999


Q ss_pred             EeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHH-HHhCceEEe---CCccccccc
Q 006354          281 MYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM-LCAGCAIGY---GSTLTMTDT  356 (649)
Q Consensus       281 ~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~-l~~G~~l~~---~~~~~l~~~  356 (649)
                      +|| ||||.||++.++|.+...........+ .+.++|++++.+|++|++++...+.+ +..|+++++   +++..+.+.
T Consensus       612 iyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~  689 (994)
T PRK07868        612 AFS-TAGGELVAKQITNYRWALSAFGTASAA-ALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQE  689 (994)
T ss_pred             EEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-CCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHH
Confidence            999 588888888888877665555555556 78899999999999999999876555 455555555   344445555


Q ss_pred             chhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHH
Q 006354          357 SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVF  436 (649)
Q Consensus       357 ~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (649)
                                 |+++++|+++++|++++.+.+.....                                           
T Consensus       690 -----------I~~~~vT~~~~~Ps~l~~L~~~~~~~-------------------------------------------  715 (994)
T PRK07868        690 -----------VRQYGVTVVSYTWAMLREVVDDPAFV-------------------------------------------  715 (994)
T ss_pred             -----------HHHhCCcEEEeHHHHHHHHHhCcCCc-------------------------------------------
Confidence                       99999999999999999887531000                                           


Q ss_pred             HHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC-CccccccCcccccccccccCCCCCCCCccCCCcccc-eEEEEe--
Q 006354          437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC-YIKLVS--  512 (649)
Q Consensus       437 ~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~-~v~i~d--  512 (649)
                          ....++||.++  |+.+++++.+.+.+.++ +++++.||+||++...+..  ...+.+++|+|+||+ +++|.+  
T Consensus       716 ----~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~--~~~~~~svG~p~pg~~~v~i~~~d  787 (994)
T PRK07868        716 ----LHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV--SGAKIGSKGRPLPGAGRVELAAYD  787 (994)
T ss_pred             ----cCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc--CCCCCcccCCccCCCCceeEEEec
Confidence                00113789776  34599999999998885 8899999999987654322  234568999999998 676642  


Q ss_pred             c-------CCCCcccCCCCCCccEEEEccccccccccCCCccchh--hhccCCCcccceeeCcEEEEccCCeEEEEecCC
Q 006354          513 W-------DEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE--VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKK  583 (649)
Q Consensus       513 ~-------~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~--~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~d  583 (649)
                      +       ++.++...+++|+.|||+++|+.    |+ +|+.+..  .|   .++.|||+|||+|++|+||+|+|+||+|
T Consensus       788 ~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~----~~-~p~~t~~~~~~---~~~dgw~~TGDlg~~d~dG~l~~~GR~d  859 (994)
T PRK07868        788 PEHDLILEDDRGFVRRAEVNEVGVLLARARG----PI-DPTASVKRGVF---APADTWISTEYLFRRDDDGDYWLVDRRG  859 (994)
T ss_pred             CcCCceeecCCceEEEcCCCCceEEEEecCC----CC-ChhhhhHhccc---ccCCEEEeccceEEEcCCCCEEEeccCC
Confidence            1       12232233678999999999975    33 4554433  24   2233999999999999999999999999


Q ss_pred             CeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354          584 DIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK  622 (649)
Q Consensus       584 d~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~  622 (649)
                      |+||+. |++|+|+|||++|.+||.|. +|+|++.+++.
T Consensus       860 d~Ik~~-G~~I~p~EIE~~L~~hp~V~-~aaVvg~~d~~  896 (994)
T PRK07868        860 SVIRTA-RGPVYTEPVTDALGRIGGVD-LAVTYGVEVGG  896 (994)
T ss_pred             CEEEeC-CceEcHHHHHHHHhcCCCee-EEEEEeecCCC
Confidence            999974 88999999999999999999 99999998876

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.9e-55  Score=476.32  Aligned_cols=391  Identities=21%  Similarity=0.258  Sum_probs=327.3

Q ss_pred             HHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH
Q 006354           89 EQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW  168 (649)
Q Consensus        89 ~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~  168 (649)
                      +.+++++|+++|+..            +++           .+||+||.++++++|+.|.+.|+.+||+|+++++|++++
T Consensus        10 ~~~a~~~~~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~   66 (458)
T PRK09029         10 RHWAQVRPQAIALRL------------NDE-----------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPET   66 (458)
T ss_pred             HHHHHhCCCceeeec------------CCc-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHH
Confidence            566899999999975            333           599999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCC
Q 006354          169 FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS  248 (649)
Q Consensus       169 vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~  248 (649)
                      +++++||+++|++++|+++.++++++..+++++++++++++.+... +...       ....                  
T Consensus        67 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~-------~~~~------------------  120 (458)
T PRK09029         67 LLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSAL-------TSLH------------------  120 (458)
T ss_pred             HHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhhc-------cccc------------------
Confidence            9999999999999999999999999999999999999999876422 1100       0000                  


Q ss_pred             CceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHH
Q 006354          249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH  328 (649)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h  328 (649)
                            ..     . ..........++++++++|||||||.||||++||++++..+......+ .+.++|+++..+|++|
T Consensus       121 ------~~-----~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~h  187 (458)
T PRK09029        121 ------LQ-----L-VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-PFTAQDSWLLSLPLFH  187 (458)
T ss_pred             ------cc-----c-ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-CCCccceEEEecCcHh
Confidence                  00     0 000112344678999999999999999999999999999988888877 8889999999999999


Q ss_pred             HHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 006354          329 VLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIG  408 (649)
Q Consensus       329 ~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a  408 (649)
                      .+++...+.++..|+++++.+...+.+.           +  .++|.+..+|+++..+......                
T Consensus       188 ~~g~~~~~~~l~~G~~v~~~~~~~~~~~-----------i--~~~t~~~~~P~~~~~l~~~~~~----------------  238 (458)
T PRK09029        188 VSGQGIVWRWLYAGATLVVRDKQPLEQA-----------L--AGCTHASLVPTQLWRLLDNRSE----------------  238 (458)
T ss_pred             hhhhHHHHHHHhCCceEEeCChHHHHHH-----------H--hhceeeecChHHHHHHHhcccc----------------
Confidence            9998777788999999998665444433           4  3789999999999887653110                


Q ss_pred             HHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccccc
Q 006354          409 YKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF  488 (649)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~  488 (649)
                                                         ..++|.+++||+++++.+.++++.. +.++++.||+||++...+.
T Consensus       239 -----------------------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~  282 (458)
T PRK09029        239 -----------------------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCA  282 (458)
T ss_pred             -----------------------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceec
Confidence                                               0269999999999999999998864 9999999999999875554


Q ss_pred             cCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEE
Q 006354          489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIG  568 (649)
Q Consensus       489 ~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg  568 (649)
                      ....  ...++|+|+++++++|++               |||+|+|+.++.||+++++.+....   .+  |||+|||+|
T Consensus       283 ~~~~--~~~~~G~~~~~~~~~i~~---------------gel~v~g~~~~~gY~~~~~~~~~~~---~~--~~~~TGD~~  340 (458)
T PRK09029        283 KRAD--GLAGVGSPLPGREVKLVD---------------GEIWLRGASLALGYWRQGQLVPLVN---DE--GWFATRDRG  340 (458)
T ss_pred             cCCC--CCCCCCCCCCCCEEEEeC---------------CEEEEecCceeeeeecCcccccccc---CC--CccCCCCcE
Confidence            3322  235699999999999975               8999999999999999998876433   44  899999999


Q ss_pred             EEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhh
Q 006354          569 QVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQ  631 (649)
Q Consensus       569 ~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~  631 (649)
                      ++| ||++++.||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.++.
T Consensus       341 ~~~-~g~l~~~gR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~-~~~v~~~~~~~~~~~~~a~v  400 (458)
T PRK09029        341 EWQ-NGELTILGRLDNLFFS-GGEGIQPEEIERVINQHPLVQ-QVFVVPVADAEFGQRPVAVV  400 (458)
T ss_pred             EEe-CCEEEEecccccceee-CCEEeCHHHHHHHHhcCCCcc-eEEEEccCCcccCceEEEEE
Confidence            999 9999999999999997 599999999999999999999 99999999988776554443

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.6e-54  Score=476.42  Aligned_cols=453  Identities=18%  Similarity=0.218  Sum_probs=354.7

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      -|+.++|+++++++|+++|+.+            +++           .+||+||.++++++|+.|.+.|+++||+|+|+
T Consensus         3 ~~l~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~   59 (533)
T PRK07798          3 WNIADLFEAVADAVPDRVALVC------------GDR-----------RLTYAELEERANRLAHYLIAQGLGPGDHVGIY   59 (533)
T ss_pred             ccHHHHHHHHHHhCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            3799999999999999999986            333           69999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.+....+.++....+.++.++.+++.....  
T Consensus        60 ~~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  137 (533)
T PRK07798         60 ARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGND--  137 (533)
T ss_pred             cCCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccc--
Confidence            999999999999999999999999999999999999999999999999988877777766666677777766443211  


Q ss_pred             CCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC--------CC
Q 006354          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--------PN  313 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~--------~~  313 (649)
                            ......+++++........ .... ..++.++|+|||||||.||+|+++|+++..........+        ..
T Consensus       138 ------~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~  209 (533)
T PRK07798        138 ------LLPGAVDYEDALAAGSPER-DFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEE  209 (533)
T ss_pred             ------cCCccccHHHHHhccCCcC-CCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhh
Confidence                  0112456677665433221 1112 234557999999999999999999999887655432211        01


Q ss_pred             C------CCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHH-H
Q 006354          314 P------GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR-V  386 (649)
Q Consensus       314 ~------~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~-l  386 (649)
                      +      ..+++++..+|++|..+++.++.+++.|+++++.+.. ..+     ...++..++++++|.+.++|..+.. +
T Consensus       210 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~-~~~-----~~~~~~~i~~~~~t~~~~~~~~~~~~l  283 (533)
T PRK07798        210 LAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDV-RFD-----ADEVWRTIEREKVNVITIVGDAMARPL  283 (533)
T ss_pred             hcccccCCCCceEEEecchhhhhhHHHHHHHHhcCceEEEecCC-CcC-----HHHHHHHHHHhCCeEEEechHHHHHHH
Confidence            1      4678999999999999999889999999999996522 111     2233444999999999999877654 3


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHH
Q 006354          387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN  466 (649)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~  466 (649)
                      ...+. .                                             ......+++|.+++||+++++++.++|+
T Consensus       284 ~~~~~-~---------------------------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~  317 (533)
T PRK07798        284 LDALE-A---------------------------------------------RGPYDLSSLFAIASGGALFSPSVKEALL  317 (533)
T ss_pred             HHHhc-c---------------------------------------------cccCCCCceEEEEECCCCCCHHHHHHHH
Confidence            22111 0                                             0011225899999999999999999999


Q ss_pred             hhc-CCccccccCcccccccccccCCCCCCCCccC--CCcccceEEEEecCCCCcccCCCCCCc--cEEEEccccccccc
Q 006354          467 ICM-GAPIGQAYGLTETCAGSTFSEWDDPSVGRVG--PPVPCCYIKLVSWDEGGYKTSDKPMPR--GEIVVGGFNVTAGY  541 (649)
Q Consensus       467 ~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG--~p~p~~~v~i~d~~~~~~~~~~~~g~~--GEl~v~g~~v~~gY  541 (649)
                      +.+ +..+++.||+||++.+........  ....|  ++.++..++|+| +++..   +++|+.  |+|+. ++.++.||
T Consensus       318 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~--~~~~g~~~~~~~~~~~i~~-~~~~~---~~~g~~~~g~l~~-~~~~~~gy  390 (533)
T PRK07798        318 ELLPNVVLTDSIGSSETGFGGSGTVAKG--AVHTGGPRFTIGPRTVVLD-EDGNP---VEPGSGEIGWIAR-RGHIPLGY  390 (533)
T ss_pred             HHcCCCeEEeeecccccccccccCCCCC--CccCCCCccCCCceEEEEC-CCCCC---CCCCCCCeeEEEe-ecCccccc
Confidence            887 789999999999866554332211  12334  788999999998 44443   567766  77764 56799999


Q ss_pred             cCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCC
Q 006354          542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPM  621 (649)
Q Consensus       542 ~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~  621 (649)
                      +++++.|++.|.. .++.+||+|||+|++|+||+++++||.||+||. +|++|+|.+||++|.++|.|. +++|++..+.
T Consensus       391 ~~~~~~t~~~f~~-~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~-~~~v~~~~~~  467 (533)
T PRK07798        391 YKDPEKTAETFPT-IDGVRYAIPGDRARVEADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVA-DALVVGVPDE  467 (533)
T ss_pred             cCChhhhHHhhcc-CCCCceEEcCcEEEEcCCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccce-eEEEEeccCc
Confidence            9999999999853 234479999999999999999999999999997 599999999999999999999 9999998877


Q ss_pred             Ccccchhh
Q 006354          622 KLASSTKI  629 (649)
Q Consensus       622 ~~~~~~~~  629 (649)
                      ..++.+.+
T Consensus       468 ~~~~~~~~  475 (533)
T PRK07798        468 RWGQEVVA  475 (533)
T ss_pred             ccCceEEE
Confidence            65544433

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=7.2e-55  Score=472.07  Aligned_cols=371  Identities=15%  Similarity=0.162  Sum_probs=303.7

Q ss_pred             EeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEEC
Q 006354          131 QTYGEVFDRACSFASGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD  209 (649)
Q Consensus       131 ~TY~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  209 (649)
                      +.|+||.++++++|++|++.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++++++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            6899999999999999999988 579999999999999999999999999999999999999999999999999999987


Q ss_pred             chhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCC
Q 006354          210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGL  289 (649)
Q Consensus       210 ~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~  289 (649)
                      .+.....               ..     .          .           . .   ......++++++++|||||||.
T Consensus       100 ~~~~~~~---------------~~-----~----------~-----------~-~---~~~~~~~~~~~~i~~TSGTTG~  134 (452)
T PRK07445        100 DQLKLSH---------------PP-----P----------L-----------P-S---QGILPNLETGWIMIPTGGSSGQ  134 (452)
T ss_pred             Ccccccc---------------CC-----C----------C-----------C-c---cccCCCCCCcEEEEeCCCCCCC
Confidence            6532100               00     0          0           0 0   0112356899999999999999


Q ss_pred             cceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccce
Q 006354          290 PKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS  369 (649)
Q Consensus       290 PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~  369 (649)
                      ||||++||+++++.+......+ .+.+ +++++.+|++|.+++..++.+++.|+++++.+...+.+.        .....
T Consensus       135 PKgV~~t~~~l~~~~~~~~~~~-~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~--------~~~~~  204 (452)
T PRK07445        135 IRFAIHTWETLTASVQGFQRYF-QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSG--------QELPP  204 (452)
T ss_pred             CcEEEechHHHHHHHHHHHHHh-cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccch--------hhhhh
Confidence            9999999999998888877766 6654 467889999999999888889999999998653222211        01134


Q ss_pred             eecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEE
Q 006354          370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF  449 (649)
Q Consensus       370 ~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~  449 (649)
                      .+++|++.++|++++.+.+....                                                  ..++||.
T Consensus       205 ~~~~t~~~~vP~~l~~l~~~~~~--------------------------------------------------~l~~l~~  234 (452)
T PRK07445        205 NPSDFFLSLVPTQLQRLLQLRPQ--------------------------------------------------WLAQFRT  234 (452)
T ss_pred             hcCceEEEehHHHHHHHHhhChh--------------------------------------------------hhhcceE
Confidence            67899999999999988651100                                                  0137999


Q ss_pred             EEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCC--CCCCccCCCcccceEEEEecCCCCcccCCCCCCc
Q 006354          450 MICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR  527 (649)
Q Consensus       450 i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~  527 (649)
                      +++||+++++++.+.++. +++++++.||+||++..++.....+  ...+++|+|+|+++++|+            .|+.
T Consensus       235 i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~------------~g~~  301 (452)
T PRK07445        235 ILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP------------ANQT  301 (452)
T ss_pred             EEECCccCCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc------------CCCc
Confidence            999999999999888876 4899999999999876554433222  235789999999999997            2467


Q ss_pred             cEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCc
Q 006354          528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLP  607 (649)
Q Consensus       528 GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p  607 (649)
                      |||+|+|++++.||++++..        .+  +||+|||+|++|+||+++|.||.||+||+ +|++|+|.|||++|.+||
T Consensus       302 Gel~v~g~~~~~gY~~~~~~--------~~--g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p  370 (452)
T PRK07445        302 GNITIQAQSLALGYYPQILD--------SQ--GIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATG  370 (452)
T ss_pred             ceEEEeCCccchhhcCCccC--------CC--CEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCC
Confidence            99999999999999985431        34  89999999999999999999999999997 599999999999999999


Q ss_pred             ccccceEEEecCCCCcccchhhhh
Q 006354          608 LLFHHIRLWRNGPMKLASSTKIFQ  631 (649)
Q Consensus       608 ~V~~~~~V~g~~~~~~~~~~~~~~  631 (649)
                      +|. +|+|+|.+++..|+.+.++.
T Consensus       371 ~V~-~a~V~g~~~~~~g~~~~a~v  393 (452)
T PRK07445        371 LVQ-DVCVLGLPDPHWGEVVTAIY  393 (452)
T ss_pred             Ccc-eEEEEeccCcCCCcEEEEEE
Confidence            999 99999999888776554443

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.3e-53  Score=468.93  Aligned_cols=418  Identities=21%  Similarity=0.254  Sum_probs=337.8

Q ss_pred             EEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEEC
Q 006354          130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD  209 (649)
Q Consensus       130 ~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  209 (649)
                      .+||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++
T Consensus        11 ~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~   90 (502)
T PRK08276         11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVS   90 (502)
T ss_pred             EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhhccCC-CccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCC
Q 006354          210 SKQLKKLSAVSSSLK-TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTG  288 (649)
Q Consensus       210 ~~~~~~l~~~~~~~~-~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG  288 (649)
                      ......+.+.....+ .++.++..+...             .....+++......    .......++.++++|||||||
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG  153 (502)
T PRK08276         91 AALADTAAELAAELPAGVPLLLVVAGPV-------------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTG  153 (502)
T ss_pred             cchhhHHHHHhhhccccccEEEEeCCCC-------------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCC
Confidence            888777666554444 455555542211             11234554433221    112235677899999999999


Q ss_pred             CcceEEechHHHHHHHH------HHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCC---cccccccchh
Q 006354          289 LPKGVMITHGNIVATAA------AIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSK  359 (649)
Q Consensus       289 ~PKgV~~th~~l~~~~~------~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~  359 (649)
                      .||+|+++|.++.....      ...... ....++++++.+|++|.+++...+.++..|+++++.+   +..+.+.   
T Consensus       154 ~PK~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---  229 (502)
T PRK08276        154 RPKGIKRPLPGLDPDEAPGMMLALLGFGM-YGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALAL---  229 (502)
T ss_pred             CCceEEEccCCcchhhhhHHhhhhhhhcc-cCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHH---
Confidence            99999999887654321      111122 2346789999999999999888788999999998843   4444444   


Q ss_pred             hccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHH
Q 006354          360 IKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSV  439 (649)
Q Consensus       360 ~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (649)
                              ++++++|++.++|+++..+.........                                            
T Consensus       230 --------i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------------------------  257 (502)
T PRK08276        230 --------IERYRVTHSQLVPTMFVRMLKLPEEVRA--------------------------------------------  257 (502)
T ss_pred             --------HHHhCCeEEEehHHHHHHHHhCccccCC--------------------------------------------
Confidence                    9999999999999999888753211000                                            


Q ss_pred             HHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCc
Q 006354          440 RAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGY  518 (649)
Q Consensus       440 ~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~  518 (649)
                       ..+.+++|.+++||+++++++.+++.+.++..+++.||+||++.++...... ....+++|+|+ +++++|+| +++..
T Consensus       258 -~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~  334 (502)
T PRK08276        258 -RYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNE  334 (502)
T ss_pred             -CCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCC
Confidence             0112489999999999999999999998899999999999998765544332 23457899999 88999998 55543


Q ss_pred             ccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCCh
Q 006354          519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGK  598 (649)
Q Consensus       519 ~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~e  598 (649)
                         ++.|+.|||+++|+.++.||+++++.+.+.|.  .+  +||+|||+|++++||.+++.||.||+||+ +|++|++.+
T Consensus       335 ---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~--~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~  406 (502)
T PRK08276        335 ---LPPGEIGTVYFEMDGYPFEYHNDPEKTAAARN--PH--GWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQE  406 (502)
T ss_pred             ---CcCCCceEEEEECCCccchhcCCHHHHHHHhc--CC--CceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHH
Confidence               67899999999999999999999999999987  55  89999999999999999999999999997 599999999


Q ss_pred             hhhHhccCcccccceEEEecCCCCcccchhhhhh
Q 006354          599 IPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQS  632 (649)
Q Consensus       599 IE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~  632 (649)
                      ||.+|.+||+|. +|+|++..++..++...++..
T Consensus       407 iE~~i~~~~~v~-~~~v~~~~~~~~~~~~~~~v~  439 (502)
T PRK08276        407 IENLLVTHPKVA-DVAVFGVPDEEMGERVKAVVQ  439 (502)
T ss_pred             HHHHHHhCCCcc-eEEEEeCCCcccCceEEEEEE
Confidence            999999999999 999999998876655444333

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=3.8e-54  Score=457.29  Aligned_cols=461  Identities=18%  Similarity=0.189  Sum_probs=361.8

Q ss_pred             HHHHHHHHHh-CCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcc
Q 006354           85 AALFEQSCKS-HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAE  163 (649)
Q Consensus        85 ~~~~~~~a~~-~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~  163 (649)
                      ..++++..+. .++.+++.++.          ++.       ++...+||.|+.+++.++|..|.+.|+++||+|++++|
T Consensus        67 ~n~~~~~~~~~~~~~~a~~~~~----------~~~-------~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mP  129 (626)
T KOG1175|consen   67 YNCLDRHIKEKGGDKVAIIFEG----------NEG-------GDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMP  129 (626)
T ss_pred             HhhhhhhhhhcCCCCcEEEEEe----------cCC-------CceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEecc
Confidence            4444555444 48999999864          222       22234899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHH---------HHHhhccCCCc----cEEE
Q 006354          164 TCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKK---------LSAVSSSLKTI----KNVI  230 (649)
Q Consensus       164 ~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------l~~~~~~~~~~----~~ii  230 (649)
                      +.+++++++|||.++|++.+++-..+++.++...+++++++++++.+.....         ..++....+..    ...+
T Consensus       130 m~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~  209 (626)
T KOG1175|consen  130 MIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDL  209 (626)
T ss_pred             CChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceee
Confidence            9999999999999999999999999999999999999999999997643322         22222111111    1111


Q ss_pred             EecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHH-HHHHHHh
Q 006354          231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA-TAAAIKT  309 (649)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~-~~~~~~~  309 (649)
                      .+...              -....+++........ .++...+.+|+.+|+|||||||.||++.+|+...+- .+.....
T Consensus       210 ~~~~~--------------~~d~~~~~~~~~a~~~-~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~  274 (626)
T KOG1175|consen  210 IVSRR--------------NRDLFWSLELKKASPE-HPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRY  274 (626)
T ss_pred             EEecc--------------cccccHHHHhhhcCCC-CCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcce
Confidence            11110              0123444444433332 236778899999999999999999999999887544 4444455


Q ss_pred             hCCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354          310 LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (649)
Q Consensus       310 ~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~  388 (649)
                      .+ .++++|++.++..+.|+.+-++ .+.+|++|++++++.-..+ +     ...++..+.++++|++++.|+.++.+..
T Consensus       275 ~~-d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~-~-----~~~~~~~v~k~~it~l~t~pt~~r~l~~  347 (626)
T KOG1175|consen  275 HF-DLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPF-D-----PGRIWKILDKYKVTVLYTAPTAYRLLRR  347 (626)
T ss_pred             ec-cCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCC-C-----hhhhhhhHhhcceEEEEeccHHHHHHHH
Confidence            56 9999999999999999999877 5669999999999222111 1     2334444999999999999999998876


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (649)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~  468 (649)
                      ...+......                                             .++||.+.++||+++++...++...
T Consensus       348 ~~~~~~~~~~---------------------------------------------~~sLk~~~S~Gepi~~~~~ew~~~~  382 (626)
T KOG1175|consen  348 LGQEDVTSYS---------------------------------------------LKSLRTCGSVGEPINPEAWEWWKRV  382 (626)
T ss_pred             hccccccccc---------------------------------------------cceEEEEeecCccCCcchHHHHHHh
Confidence            4332221110                                             0279999999999999999999999


Q ss_pred             cCC-ccccccCcccccccccccCCCC--CCCCccCCCcccceEEEEecCCCCcccCCCCC-CccEEEEccc---cccccc
Q 006354          469 MGA-PIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM-PRGEIVVGGF---NVTAGY  541 (649)
Q Consensus       469 ~~~-~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g-~~GEl~v~g~---~v~~gY  541 (649)
                      ++. +|++.||.||++..+.......  ..+++.|.|.+++.+.|+| ++++..   ++. +.|||+++.+   +.+++|
T Consensus       383 ~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~---~~~~~~G~l~~~~~~P~~~~r~~  458 (626)
T KOG1175|consen  383 TGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNEL---PPSTGNGELRLKPPWPPGMFRTL  458 (626)
T ss_pred             cCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCc---CCCCceeEEEEeCCCCccccccc
Confidence            987 6999999999999887666554  7789999999999999999 566653   333 8999999883   889999


Q ss_pred             cCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCC
Q 006354          542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPM  621 (649)
Q Consensus       542 ~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~  621 (649)
                      |+|++.....+.  ....|+|.|||.|++|+||++++.||.||+|+++ |+|+++.|||++|.+||.|. |++|+|.+++
T Consensus       459 ~~n~erf~~~yf--~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvs-GhRigtaEIE~al~~hp~Va-EsAvVg~p~~  534 (626)
T KOG1175|consen  459 WGNHERFRAAYF--KKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVS-GHRIGTAEIESALVEHPAVA-ESAVVGSPDP  534 (626)
T ss_pred             cCCHHHhhhhhc--ccCCceEEecCceEEcCCceEEEEeccccccccc-ceeecHHHHHHHHhhCcchh-heeeecCCCC
Confidence            999995444443  3223899999999999999999999999999985 99999999999999999999 9999999999


Q ss_pred             Ccccchhhhhhhhhhc
Q 006354          622 KLASSTKIFQSCVTKL  637 (649)
Q Consensus       622 ~~~~~~~~~~~~~~~~  637 (649)
                      ..|+.+.+|..+++..
T Consensus       535 ~~ge~v~aFvvl~~g~  550 (626)
T KOG1175|consen  535 IKGEVVLAFVVLKSGS  550 (626)
T ss_pred             CCCeEEEEEEEEcCCC
Confidence            9999999999988773

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-53  Score=474.06  Aligned_cols=429  Identities=22%  Similarity=0.312  Sum_probs=334.2

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .++.+.+...|+.+|+.+++...           ++.          +.+||.||.++++++|++|++.|+++||+|+|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----------~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~   60 (545)
T PRK07768          2 SRFTEKMYANARTSPRGMVTGEP-----------DAP----------VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVL   60 (545)
T ss_pred             chHHHHHHHHhhCCCcceEEecC-----------CCc----------eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            46888888999999999988653           222          469999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHH-------HHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDAL-------IHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN  234 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~  234 (649)
                      ++|+++++++++||+++|++++|+++..+.+++       .++++.++++++++++.....+..+...            
T Consensus        61 ~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------  128 (545)
T PRK07768         61 AGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEK------------  128 (545)
T ss_pred             CCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhccc------------
Confidence            999999999999999999999999998886554       4567778999999987655433321110            


Q ss_pred             CCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC
Q 006354          235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (649)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~  314 (649)
                                    .+...+++++......   ......++++++|+|||||||.||||+++|+++.+.+......+ ++
T Consensus       129 --------------~~~~~~~~~l~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~  190 (545)
T PRK07768        129 --------------GIRVLTVADLLAADPI---DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-EF  190 (545)
T ss_pred             --------------CCceeehhhhcccCCC---CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-CC
Confidence                          1234455555443221   22345679999999999999999999999999999888887777 77


Q ss_pred             CCC-cEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHH
Q 006354          315 GRS-DVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK  392 (649)
Q Consensus       315 ~~~-d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~  392 (649)
                      ..+ |++++.+|++|..++.. .+.++..|+++++..+..+...    +..+...++++++|++.++|.++..+...+..
T Consensus       191 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~  266 (545)
T PRK07768        191 DVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRD----PLLWAELISKYRGTMTAAPNFAYALLARRLRR  266 (545)
T ss_pred             CCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHh----HHHHHHHHHHhCCEEEECchHHHHHHHHHHhc
Confidence            766 89999999999999876 5567999999988654332221    11223338999999988877777665543211


Q ss_pred             HHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh---c
Q 006354          393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC---M  469 (649)
Q Consensus       393 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~---~  469 (649)
                      ....                                           +....+++|.+++||+++++++.+.+.+.   +
T Consensus       267 ~~~~-------------------------------------------~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~  303 (545)
T PRK07768        267 QAKP-------------------------------------------GAFDLSSLRFALNGAEPIDPADVEDLLDAGARF  303 (545)
T ss_pred             cccc-------------------------------------------cCCCchheeeEEeccCCCCHHHHHHHHHHHHhc
Confidence            1000                                           00112489999999999999998888764   4


Q ss_pred             CC---ccccccCcccccccccccCCC--------------------------CCCCCccCCCcccceEEEEecCCCCccc
Q 006354          470 GA---PIGQAYGLTETCAGSTFSEWD--------------------------DPSVGRVGPPVPCCYIKLVSWDEGGYKT  520 (649)
Q Consensus       470 ~~---~l~~~YG~TE~~~~~~~~~~~--------------------------~~~~~~vG~p~p~~~v~i~d~~~~~~~~  520 (649)
                      |.   .+++.||+||++..++.....                          ....+++|+|+++++++|+| ++++.  
T Consensus       304 g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~--  380 (545)
T PRK07768        304 GLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQV--  380 (545)
T ss_pred             CCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCC--
Confidence            54   499999999998765443221                          11236899999999999999 55554  


Q ss_pred             CCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhh
Q 006354          521 SDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIP  600 (649)
Q Consensus       521 ~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE  600 (649)
                       +++|+.|||+++|+.++.||++++......+   .+  +||+|||+|++++||.++++||.||+||+. |++|+|.+||
T Consensus       381 -~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~--g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~-G~~v~~~eiE  453 (545)
T PRK07768        381 -LPPRGVGVIELRGESVTPGYLTMDGFIPAQD---AD--GWLDTGDLGYLTEEGEVVVCGRVKDVIIMA-GRNIYPTDIE  453 (545)
T ss_pred             -CCCCCEEEEEEccCcccccccCCCCCccccc---CC--CeeeccceEEEecCCEEEEEccccceEEEC-CEecCHHHHH
Confidence             6789999999999999999998655443322   34  899999999999999999999999999985 9999999999


Q ss_pred             hHhccCcccccceEEEecC
Q 006354          601 STTTVLPLLFHHIRLWRNG  619 (649)
Q Consensus       601 ~~l~~~p~V~~~~~V~g~~  619 (649)
                      ++|.+||+|. +++|++..
T Consensus       454 ~~l~~~~~v~-~~~vv~~~  471 (545)
T PRK07768        454 RAAARVEGVR-PGNAVAVR  471 (545)
T ss_pred             HHHHhCcccc-cceEEEEE
Confidence            9999999999 98777643

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=8.2e-53  Score=465.20  Aligned_cols=430  Identities=20%  Similarity=0.188  Sum_probs=333.1

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEE
Q 006354          129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC  208 (649)
Q Consensus       129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  208 (649)
                      +.+||.||.++++++|++|.++|+++||+|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHhhccCCCccEEEEecCCCCCc-cCCCC-C-CCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecC
Q 006354          209 DSKQLKKLSAVSSSLKTIKNVIYFENDGSEK-DSGVS-G-GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSG  285 (649)
Q Consensus       209 ~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG  285 (649)
                      +......+.+...   ....++......... ..... . ........+++++.....    ......++++++++||||
T Consensus        90 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSG  162 (509)
T PRK12406         90 HADLLHGLASALP---AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSG  162 (509)
T ss_pred             ccchhhhhhhhhh---cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCC
Confidence            9877665543321   111222222110000 00000 0 000112345555543221    122345789999999999


Q ss_pred             CCCCcceEEechHHHHH---HHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhcc
Q 006354          286 STGLPKGVMITHGNIVA---TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK  362 (649)
Q Consensus       286 STG~PKgV~~th~~l~~---~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~  362 (649)
                      |||.||+|+++|.+..+   ........+ ++.++++++..+|++|..+....+.++..|+++++.+...        +.
T Consensus       163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~  233 (509)
T PRK12406        163 TTGHPKGVRRAAPTPEQAAAAEQMRALIY-GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFD--------PE  233 (509)
T ss_pred             CCCCCceEEEechhHHHHHHHHHhhhhhc-CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCC--------HH
Confidence            99999999997765433   333344556 7888999999999999988777777889999998843221        11


Q ss_pred             CccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHH
Q 006354          363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV  442 (649)
Q Consensus       363 ~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (649)
                      .+...++++++|.+.++|+++..+........                                             +..
T Consensus       234 ~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------------~~~  268 (509)
T PRK12406        234 ELLQLIERHRITHMHMVPTMFIRLLKLPEEVR---------------------------------------------AKY  268 (509)
T ss_pred             HHHHHHHHcCCeEEEccHHHHHHHHhCchhhc---------------------------------------------ccC
Confidence            23333999999999999999998865211100                                             001


Q ss_pred             hCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCC-CCCCCccCCCcccceEEEEecCCCCcccC
Q 006354          443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTS  521 (649)
Q Consensus       443 ~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~~~v~i~d~~~~~~~~~  521 (649)
                      ..+++|.+++||+++++++.+++.+.+++.+++.||+||++.+++..... ...++++|.|+++++++++| +++..   
T Consensus       269 ~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---  344 (509)
T PRK12406        269 DVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRP---  344 (509)
T ss_pred             CCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCC---
Confidence            12489999999999999999999998899999999999998766544322 23457899999999999999 55443   


Q ss_pred             CCCCCccEEEEccccccc-cccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhh
Q 006354          522 DKPMPRGEIVVGGFNVTA-GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIP  600 (649)
Q Consensus       522 ~~~g~~GEl~v~g~~v~~-gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE  600 (649)
                      ++.|+.|||+++|+.++. ||+++++.++..+   .+  +||+|||+|++++||++++.||.||+||+ +|++|+|.+||
T Consensus       345 ~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~---~~--~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE  418 (509)
T PRK12406        345 LPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID---RG--GFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIE  418 (509)
T ss_pred             CCCCCceEEEEECCccccccccCCchhccccc---CC--CCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHH
Confidence            678999999999998875 9999999888766   56  89999999999999999999999999997 59999999999


Q ss_pred             hHhccCcccccceEEEecCCCCcccchhhh
Q 006354          601 STTTVLPLLFHHIRLWRNGPMKLASSTKIF  630 (649)
Q Consensus       601 ~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~  630 (649)
                      ++|.++|+|. +++|++.++...++.+.++
T Consensus       419 ~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~  447 (509)
T PRK12406        419 AVLHAVPGVH-DCAVFGIPDAEFGEALMAV  447 (509)
T ss_pred             HHHHhCCCee-EEEEEeeeccccCceeEEE
Confidence            9999999999 9999999887765544333

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.6e-53  Score=468.67  Aligned_cols=402  Identities=17%  Similarity=0.139  Sum_probs=293.2

Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh------HHHHHHhhccCCCccEEEEecCC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ------LKKLSAVSSSLKTIKNVIYFEND  235 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~l~~~~~~~~~~~~ii~~~~~  235 (649)
                      ++|++++++++|||+++|++++|+++.++++++.++|++++++++|+++..      .+.+..+....+ .+.++.....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~   79 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG   79 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence            589999999999999999999999999999999999999999999998642      122222222111 2223222111


Q ss_pred             CCCccCCCCCCCCCceEeehHHHHhcCCC------CCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHh
Q 006354          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKR------SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT  309 (649)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~  309 (649)
                      ....   .   .......+++++......      ....+....++|+++|+|||||||.||||++||++++..+.....
T Consensus        80 ~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~  153 (499)
T PLN03051         80 EPVA---V---PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWA  153 (499)
T ss_pred             cccC---C---ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHH
Confidence            0000   0   000012345555432111      011112235689999999999999999999999998877666556


Q ss_pred             hCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       310 ~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                      .+ .+..+|++++.+|++|++++..++.++..|+++++.+...  +     ...+++.|+++++|++.++|+++..|.+.
T Consensus       154 ~~-~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~--~-----~~~~~~~i~~~~vt~~~~vP~~~~~l~~~  225 (499)
T PLN03051        154 HM-DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAP--L-----GRGFGKFVQDAGVTVLGLVPSIVKAWRHT  225 (499)
T ss_pred             hc-CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCC--C-----cHHHHHHHHHhCCcEEEeCHHHHHHHHhc
Confidence            66 7888999999999999999877788899999998843210  0     11233339999999999999999988653


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      .....                                             .....++||.+++||++++++..+++++.+
T Consensus       226 ~~~~~---------------------------------------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~  260 (499)
T PLN03051        226 GAFAM---------------------------------------------EGLDWSKLRVFASTGEASAVDDVLWLSSVR  260 (499)
T ss_pred             Ccccc---------------------------------------------ccCCchhheEEEecCCCCCHHHHHHHHHhc
Confidence            10000                                             000113799999999999999988877633


Q ss_pred             --CCccccccCccccccccccc-CCCCCCCCccCCCcccceEEEEecCCCCcccCCCCC--CccEEEEccccc--ccccc
Q 006354          470 --GAPIGQAYGLTETCAGSTFS-EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM--PRGEIVVGGFNV--TAGYF  542 (649)
Q Consensus       470 --~~~l~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g--~~GEl~v~g~~v--~~gY~  542 (649)
                        ++++++.||+||++...+.. .......+++|+|.++++++|+| ++++.   ++.|  +.|||+|+|+.+  +.|||
T Consensus       261 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~---~~~g~~~~Gel~v~g~~~~~~~gy~  336 (499)
T PLN03051        261 GYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVP---YPDDQPCVGEVALAPPMLGASDRLL  336 (499)
T ss_pred             cccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCC---CCCCCCcceEEEEecCcCCCCcccc
Confidence              47899999999986543322 22223457899999999999999 55554   5566  589999999977  58999


Q ss_pred             CCCccchhhhccC-----CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhcc-CcccccceEEE
Q 006354          543 NNPGKTSEVYKVD-----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTV-LPLLFHHIRLW  616 (649)
Q Consensus       543 ~~~~~t~~~f~~~-----~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~-~p~V~~~~~V~  616 (649)
                      |++ .++ .|...     ..+.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+ ||+|. +|+|+
T Consensus       337 ~~~-~~~-~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~-~aavv  412 (499)
T PLN03051        337 NAD-HDK-VYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIA-ETAAV  412 (499)
T ss_pred             CCc-ccc-eeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcc-eEEEE
Confidence            865 343 33210     012348999999999999999999999999997 5999999999999986 99999 99999


Q ss_pred             ecCCCCcc-cchhhhh
Q 006354          617 RNGPMKLA-SSTKIFQ  631 (649)
Q Consensus       617 g~~~~~~~-~~~~~~~  631 (649)
                      |.+++..| +.+.+++
T Consensus       413 g~~d~~~g~~~~~a~v  428 (499)
T PLN03051        413 GVAPPDGGPELLVIFL  428 (499)
T ss_pred             EecCCCCCceEEEEEE
Confidence            99998888 4555543

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.4e-52  Score=450.30  Aligned_cols=397  Identities=24%  Similarity=0.279  Sum_probs=324.3

Q ss_pred             eHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECc
Q 006354          132 TYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS  210 (649)
Q Consensus       132 TY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  210 (649)
                      ||+||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCc
Q 006354          211 KQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP  290 (649)
Q Consensus       211 ~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~P  290 (649)
                      .....+.....      .++.....                   +...................+++++++|||||||.|
T Consensus        81 ~~~~~~~~~~~------~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~p  135 (408)
T TIGR01733        81 ALASRLAGLVL------PIILVDPL-------------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRP  135 (408)
T ss_pred             chhhhccccCC------ceEEechh-------------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCC
Confidence            76655433211      11111100                   000000000000111114578999999999999999


Q ss_pred             ceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCcccccee
Q 006354          291 KGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV  370 (649)
Q Consensus       291 KgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~  370 (649)
                      |+|.+||+++.+.+......+ .+.++|++++..|++|.+++...+.++..|+++++.+......     ...+...+++
T Consensus       136 K~v~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-----~~~~~~~~~~  209 (408)
T TIGR01733       136 KGVVVTHRSLVNLLAWLARRY-GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERD-----AALLAALIAE  209 (408)
T ss_pred             CEEEeccHHHHHHHHHHHHhc-CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccC-----HHHHHHHHHH
Confidence            999999999999999988887 8889999999999999999988999999999999855433311     1223333888


Q ss_pred             ecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEE
Q 006354          371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM  450 (649)
Q Consensus       371 ~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i  450 (649)
                      +++|.+.++|.+++.+.+...                                                  ...++||.+
T Consensus       210 ~~~t~l~~~p~~~~~l~~~~~--------------------------------------------------~~~~~l~~v  239 (408)
T TIGR01733       210 HPVTVLNLTPSLLALLAAALP--------------------------------------------------PALASLRLV  239 (408)
T ss_pred             cCceEEEeCHHHHHHHHHhhh--------------------------------------------------hcccCceEE
Confidence            999999999999999876422                                                  011489999


Q ss_pred             EecCCCCCHHHHHHHHhhcC-CccccccCcccccccccccCCCCC-----CCCccCCCcccceEEEEecCCCCcccCCCC
Q 006354          451 ICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDP-----SVGRVGPPVPCCYIKLVSWDEGGYKTSDKP  524 (649)
Q Consensus       451 ~~gG~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~~~~~~~~-----~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~  524 (649)
                      ++||+++++++.+++.+.++ +.+++.||+||++.+++.......     +..++|+|+++++++|+|++ +..   ++.
T Consensus       240 ~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~---~~~  315 (408)
T TIGR01733       240 ILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDD-LRP---VPV  315 (408)
T ss_pred             EEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCC-CCC---CCC
Confidence            99999999999999999987 899999999999887753322211     26789999999999999954 443   678


Q ss_pred             CCccEEEEccccccccccCCCccchhhhccCC----CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhh
Q 006354          525 MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE----RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIP  600 (649)
Q Consensus       525 g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~----~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE  600 (649)
                      |+.|||+|+|+.++.||+++++.|.+.|..++    ++..||+|||+|++|++|++++.||.||+|++ +|++|+|.+||
T Consensus       316 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie  394 (408)
T TIGR01733       316 GVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIE  394 (408)
T ss_pred             CCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHH
Confidence            99999999999999999999999999886321    21239999999999999999999999999997 59999999999


Q ss_pred             hHhccCcccccceEE
Q 006354          601 STTTVLPLLFHHIRL  615 (649)
Q Consensus       601 ~~l~~~p~V~~~~~V  615 (649)
                      ++|.+||.|. +|+|
T Consensus       395 ~~l~~~~~v~-~~~v  408 (408)
T TIGR01733       395 AALLRHPGVR-EAVV  408 (408)
T ss_pred             HHHhcCcchh-hhcC
Confidence            9999999999 9875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.6e-52  Score=452.17  Aligned_cols=384  Identities=24%  Similarity=0.325  Sum_probs=317.4

Q ss_pred             eHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECch
Q 006354          132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK  211 (649)
Q Consensus       132 TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~  211 (649)
                      ||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++..++++++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcc
Q 006354          212 QLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPK  291 (649)
Q Consensus       212 ~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PK  291 (649)
                      ......                                 ....+.++................+++++++|||||||.||
T Consensus        81 ~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK  127 (436)
T TIGR01923        81 LEEKDF---------------------------------QADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPK  127 (436)
T ss_pred             ccccce---------------------------------eecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCc
Confidence            321100                                 00111111111111111123345688999999999999999


Q ss_pred             eEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceee
Q 006354          292 GVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL  371 (649)
Q Consensus       292 gV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~  371 (649)
                      +|+++|+++...+......+ +++++|++++.+|++|..++..++.++..|+++++.++..          .++..++++
T Consensus       128 ~v~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~----------~~~~~l~~~  196 (436)
T TIGR01923       128 AVPHTFRNHYASAVGSKENL-GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN----------QLLEMIANE  196 (436)
T ss_pred             EEEEehHHHHHHHHHHHhhc-CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH----------HHHHHHHHh
Confidence            99999999999999888888 8999999999999999999888888999999999865432          123339999


Q ss_pred             cceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEE
Q 006354          372 KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI  451 (649)
Q Consensus       372 ~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~  451 (649)
                      ++|++.++|+++..+.+....                                                   .+++|.++
T Consensus       197 ~~t~~~~~P~~l~~l~~~~~~---------------------------------------------------~~~l~~~~  225 (436)
T TIGR01923       197 RVTHISLVPTQLNRLLDEGGH---------------------------------------------------NENLRKIL  225 (436)
T ss_pred             CCeEEEeHHHHHHHHHhCcCC---------------------------------------------------CCceEEEE
Confidence            999999999999888653110                                                   02799999


Q ss_pred             ecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCC-CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEE
Q 006354          452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI  530 (649)
Q Consensus       452 ~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl  530 (649)
                      +||+++++++.++++. +++++++.||+||++..++...... ....++|.|++++++++.+.+.         ++.|||
T Consensus       226 ~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~---------~~~Gel  295 (436)
T TIGR01923       226 LGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNK---------EGHGEI  295 (436)
T ss_pred             ECCCCCCHHHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCC---------CCceEE
Confidence            9999999999988876 5999999999999987665443322 2223599999999999954121         267999


Q ss_pred             EEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccc
Q 006354          531 VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLF  610 (649)
Q Consensus       531 ~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~  610 (649)
                      +|+|+.++.||+++++.+...+   .+  +||+|||+|++++||++++.||.||+||+ +|++|+|.+||++|.++|.|.
T Consensus       296 ~v~~~~~~~gy~~~~~~~~~~~---~~--~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~  369 (436)
T TIGR01923       296 MVKGANLMKGYLYQGELTPAFE---QQ--GWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQ  369 (436)
T ss_pred             EEECCccchhhCCChhhhhhhh---cC--CCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCee
Confidence            9999999999999888887765   45  89999999999999999999999999997 599999999999999999999


Q ss_pred             cceEEEecCCCCcccch
Q 006354          611 HHIRLWRNGPMKLASST  627 (649)
Q Consensus       611 ~~~~V~g~~~~~~~~~~  627 (649)
                       +++|++..+...+...
T Consensus       370 -~~~v~~~~~~~~~~~~  385 (436)
T TIGR01923       370 -EAVVVPKPDAEWGQVP  385 (436)
T ss_pred             -EEEEeCCcchhcCCee
Confidence             9999999877655443

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-50  Score=410.14  Aligned_cols=444  Identities=22%  Similarity=0.221  Sum_probs=351.3

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|++++|..+++++|+++|+++.+          ++           +.+||+|++++++++|+.|+.+|++.||.|++
T Consensus        76 ~~ti~~~F~~~vrr~p~k~aii~~~----------~~-----------~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL  134 (649)
T KOG1179|consen   76 RRTIAELFLSQVRRQPDKPAIIYEG----------PF-----------QSLTFAELDARSNRVANYLHAEGLKAGDVVAL  134 (649)
T ss_pred             CCcHHHHHHHHHHhCCCccEEEEeC----------CC-----------ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEE
Confidence            4699999999999999999999853          22           36999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCcc-EEEEecCCCCCc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIK-NVIYFENDGSEK  239 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~-~ii~~~~~~~~~  239 (649)
                      +++|++|++..+||++++|++...||+++..+.+.|.+..++++.+|++.+....+.++.+.+.... .+...+....  
T Consensus       135 ~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~--  212 (649)
T KOG1179|consen  135 LMENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV--  212 (649)
T ss_pred             ecCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC--
Confidence            9999999999999999999999999999999999999999999999999999988887743322211 1111111111  


Q ss_pred             cCCCCCCCCCceEeehHHHHhcCCCCCCC---CCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCC
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVD---PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR  316 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  316 (649)
                               .....++.+.++.....+.+   ....+-.++++.+|||||||.||..++||.-+..........+ +++.
T Consensus       213 ---------~~g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-g~~~  282 (649)
T KOG1179|consen  213 ---------PDGIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-GMTA  282 (649)
T ss_pred             ---------CchHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCCc
Confidence                     01122333333333333322   2344567899999999999999999999999998888788888 9999


Q ss_pred             CcEEEEccChHHHHHHHH-HHHHHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHH
Q 006354          317 SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK  392 (649)
Q Consensus       317 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~  392 (649)
                      +|++...+|++|..+.+. +..++..|+|+++   ++..++.++           ..++++|++--.-.+.+.|.++...
T Consensus       283 ~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~D-----------C~k~~~Tv~QYIGElcRYLl~~p~~  351 (649)
T KOG1179|consen  283 DDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDD-----------CRKYNVTVIQYIGELCRYLLNQPPS  351 (649)
T ss_pred             cceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHH-----------HHHhCCeeeehHHHHHHHHHcCCCC
Confidence            999999999999998776 7789999999999   777777776           8999999999999999888876443


Q ss_pred             HHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCc
Q 006354          393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP  472 (649)
Q Consensus       393 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~  472 (649)
                      +.++.                                               .++|..+  |..+.+++++.|.++||.+
T Consensus       352 ~~er~-----------------------------------------------HkVRla~--GNGLR~diW~~Fv~RFg~~  382 (649)
T KOG1179|consen  352 PEERQ-----------------------------------------------HKVRLAY--GNGLRPDIWQQFVKRFGII  382 (649)
T ss_pred             hhhcC-----------------------------------------------ceEEEEe--cCCCCchHHHHHHHHcCCC
Confidence            33221                                               3677766  9999999999999999876


Q ss_pred             -cccccCcccccccccccCCCCCCCCccCCCc------ccceEEEEec-------CCCCcccCCCCCCccEEE--Ecccc
Q 006354          473 -IGQAYGLTETCAGSTFSEWDDPSVGRVGPPV------PCCYIKLVSW-------DEGGYKTSDKPMPRGEIV--VGGFN  536 (649)
Q Consensus       473 -l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~------p~~~v~i~d~-------~~~~~~~~~~~g~~GEl~--v~g~~  536 (649)
                       |.+.||+||........   +.+.|.+|+..      --.++.-.|+       ++.+.+.+|++|+.|.++  |.-..
T Consensus       383 ~IgE~YgaTEgn~~~~N~---d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~  459 (649)
T KOG1179|consen  383 KIGEFYGATEGNSNLVNY---DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKN  459 (649)
T ss_pred             eEEEEeccccCcceeeee---cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCC
Confidence             99999999975543332   34445555421      1122222333       345566779999999775  22233


Q ss_pred             c---cccccCCCccchhhhccC--CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCccccc
Q 006354          537 V---TAGYFNNPGKTSEVYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFH  611 (649)
Q Consensus       537 v---~~gY~~~~~~t~~~f~~~--~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~  611 (649)
                      -   +.||.++.+.|+++...+  ..|+-||.|||+-.+|+.|++||.+|..|++.++ ||+|+..|||.+|....++. 
T Consensus       460 P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWK-GENVsTtEVe~~l~~~~~~~-  537 (649)
T KOG1179|consen  460 PLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWK-GENVSTTEVEDVLSALDFLQ-  537 (649)
T ss_pred             chhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeec-CCcccHHHHHHHHhhhcccc-
Confidence            3   889999888888765532  3456899999999999999999999999999997 99999999999999999999 


Q ss_pred             ceEEEecCCCC
Q 006354          612 HIRLWRNGPMK  622 (649)
Q Consensus       612 ~~~V~g~~~~~  622 (649)
                      |+.|+|+.=+.
T Consensus       538 dv~VYGV~VP~  548 (649)
T KOG1179|consen  538 DVNVYGVTVPG  548 (649)
T ss_pred             ceeEEEEecCC
Confidence            99999987444

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-50  Score=435.41  Aligned_cols=348  Identities=17%  Similarity=0.138  Sum_probs=294.7

Q ss_pred             EEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEEC
Q 006354          130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD  209 (649)
Q Consensus       130 ~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  209 (649)
                      .+||+||.++++++|+.|. +|+++|++|+|+++|+++++++++||+++|++++|+++..+.+++..+++++++++++++
T Consensus         8 ~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~   86 (414)
T PRK08308          8 EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYG   86 (414)
T ss_pred             eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEec
Confidence            6999999999999999985 689999999999999999999999999999999999999999999999999999999997


Q ss_pred             chhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCC
Q 006354          210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGL  289 (649)
Q Consensus       210 ~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~  289 (649)
                      +....               .                      .          .    .....++++++|+|||||||.
T Consensus        87 ~~~~~---------------~----------------------~----------~----~~~~~~~~~~~i~~TSGtTG~  115 (414)
T PRK08308         87 ESDFT---------------K----------------------L----------E----AVNYLAEEPSLLQYSSGTTGE  115 (414)
T ss_pred             Ccccc---------------c----------------------c----------c----CCCCCCCCceEEEECCCCCCC
Confidence            63100               0                      0          0    012356789999999999999


Q ss_pred             cceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeC---CcccccccchhhccCcc
Q 006354          290 PKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTK  365 (649)
Q Consensus       290 PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~  365 (649)
                      ||||++||+++.+.+......+ .+..+|+++..+|++|.+++.. ++.++..|+++++.   ++..+.+.         
T Consensus       116 PKgv~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~---------  185 (414)
T PRK08308        116 PKLIRRSWTEIDREIEAYNEAL-NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNI---------  185 (414)
T ss_pred             CcEEEEehHhHHHHHHHHHHhh-CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHH---------
Confidence            9999999999999888888877 7888999999999999999865 77889999999884   33344444         


Q ss_pred             ccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCC
Q 006354          366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGG  445 (649)
Q Consensus       366 ~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  445 (649)
                        ++++++|+++++|.++..+.+....                                                   ..
T Consensus       186 --l~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------------~~  212 (414)
T PRK08308        186 --LRNTPQHILYAVPLMLHILGRLLPG---------------------------------------------------TF  212 (414)
T ss_pred             --HHHhCCeEEEcCHHHHHHHHhcCCc---------------------------------------------------cc
Confidence              8999999999999999888653110                                                   02


Q ss_pred             ceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCC
Q 006354          446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM  525 (649)
Q Consensus       446 ~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g  525 (649)
                      +++.+++||+++++++.+.+++. +.++++.||+||++.+....  .....+++|+|+|++++++.+ +         .+
T Consensus       213 ~l~~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~--~~~~~~~~G~p~~~~~~~~~~-~---------~~  279 (414)
T PRK08308        213 QFHAVMTSGTPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICP--DMKSHLDLGNPLPHVSVSAGS-D---------EN  279 (414)
T ss_pred             cccEEEEccCCCCHHHHHHHHHh-CChhhhccCccccCCeeecC--CCCCCCccCccCCCeEEEEec-C---------CC
Confidence            57889999999999999999886 67899999999987544322  223457899999999999875 1         24


Q ss_pred             CccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhcc
Q 006354          526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTV  605 (649)
Q Consensus       526 ~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~  605 (649)
                      ..|||++++                     .+  +||+|||+|++++||+++++||.||+||+ +|++|+|.|||++|.+
T Consensus       280 ~~gel~v~~---------------------~~--~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~  335 (414)
T PRK08308        280 APEEIVVKM---------------------GD--KEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLR  335 (414)
T ss_pred             CCceEEEEc---------------------CC--ceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHh
Confidence            579999974                     22  79999999999999999999999999998 4999999999999999


Q ss_pred             CcccccceEEEecCCCCcccchhhh
Q 006354          606 LPLLFHHIRLWRNGPMKLASSTKIF  630 (649)
Q Consensus       606 ~p~V~~~~~V~g~~~~~~~~~~~~~  630 (649)
                      +|+|. +|+|++..++..++.+.++
T Consensus       336 ~~~v~-~a~v~~~~~~~~~~~~~~~  359 (414)
T PRK08308        336 LPGVQ-EAVVYRGKDPVAGERVKAK  359 (414)
T ss_pred             CCCee-EEEEEeccCCCCCceEEEE
Confidence            99999 9999999988777555443

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.7e-48  Score=439.98  Aligned_cols=470  Identities=21%  Similarity=0.244  Sum_probs=363.0

Q ss_pred             CcccccccccCCCccceehheeeecceeEeeehhccccccccccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHH
Q 006354            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (649)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (649)
                      .|..++|....+..+...+..++..    ..+.  |...   +..++++...++ ..  ++.    ...+.+...+++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~--~~~~---~~~l~ll~~~e~-~~--~~~----~~~~~~~~~~i~~~  232 (642)
T COG1020         169 DYARELFDAETIERELRHFLQLLAA----LADA--PRTS---LSALPLLLPSER-EV--WNA----LAAPIPLRLTIHLL  232 (642)
T ss_pred             EeecccCCHHHHHHHHHHHHHHHHH----HHhC--cccC---cccCCCCCHHHH-hh--ccc----cccCCCccchHHHH
Confidence            4555555555555555544444331    1122  3333   677888877777 11  112    22333445799999


Q ss_pred             HHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH
Q 006354           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (649)
Q Consensus        88 ~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~  167 (649)
                      |.++++++|++.|+..            .+           ..+||+|+..+++++|+.|.+.|+.++++|+++.+++++
T Consensus       233 f~~~a~~~p~~~a~~~------------~~-----------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~  289 (642)
T COG1020         233 FEEQAATTPDAVALVR------------GG-----------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLE  289 (642)
T ss_pred             HHHHHHhCCCceeEec------------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHH
Confidence            9999999999998875            22           269999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCC
Q 006354          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (649)
Q Consensus       168 ~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~  247 (649)
                      ++++++|++++|+.++|+||.+|.+++.+++++++++.+++.........    ..+.    +..+              
T Consensus       290 ~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~----~~~~----~~~~--------------  347 (642)
T COG1020         290 LVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV----GLPG----LALD--------------  347 (642)
T ss_pred             HHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc----cCCc----cccc--------------
Confidence            99999999999999999999999999999999999999999833221100    0000    0000              


Q ss_pred             CCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChH
Q 006354          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (649)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (649)
                               .................+++.+|++|||||||.||||+++|+++++.+.+....+ .++.+|+++...+++
T Consensus       348 ---------~~~~~~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-~~~~~d~~l~~~s~~  417 (642)
T COG1020         348 ---------DALSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-GLDADDRVLALASLS  417 (642)
T ss_pred             ---------cccccCCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-CCCcccEEeecCCcc
Confidence                     0000000000001234568999999999999999999999999999888888888 999999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 006354          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (649)
Q Consensus       328 h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (649)
                      ++.+...++.++..|+++++..+....+..     .+...+.++++|++..+|.++..+...........          
T Consensus       418 fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~-----~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~----------  482 (642)
T COG1020         418 FDASVFEIFGALLEGARLVLAPALLQVDPA-----ALLELLEAQGITVLLLVPLLLRLLLLAALAPDLIS----------  482 (642)
T ss_pred             cchhHHHHHHHHhCCCEEEecCccccCCHH-----HHHHHHHHcCCEEEEecHHHHHHHHhchhhccccC----------
Confidence            999999999999999999996665555432     22333788999999999999998876411100000          


Q ss_pred             HHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc--CCccccccCccccccc
Q 006354          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM--GAPIGQAYGLTETCAG  485 (649)
Q Consensus       408 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~--~~~l~~~YG~TE~~~~  485 (649)
                                                         ..+.+|.+++||+.++..+...+....  ...+.|.||+||++..
T Consensus       483 -----------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~  527 (642)
T COG1020         483 -----------------------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLD  527 (642)
T ss_pred             -----------------------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhh
Confidence                                               002489999999999999988776654  4689999999997776


Q ss_pred             ccccCCCCCC--CCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCccccee
Q 006354          486 STFSEWDDPS--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFY  563 (649)
Q Consensus       486 ~~~~~~~~~~--~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~  563 (649)
                      .+........  ..++|+|++|+.++|+| +...   .++.|..||++|.|.++++||+++|+.|.+.|.  .+  ++|+
T Consensus       528 ~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~---~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~--~~--~~y~  599 (642)
T COG1020         528 APSFPISAELESRVPIGRPVANTQLYILD-QGLR---PLPLGVPGELYIAGLGLALGYLNRPDLTAERFI--AL--RLYR  599 (642)
T ss_pred             eeeEEcccccCCCCCcceeeCCCeEEEEC-CCCC---cCCCCCCeeeEECCcchhhhhcCChhhhHHHhh--hc--cCcc
Confidence            6554433322  46999999999999999 4433   378999999999999999999999999999997  43  4999


Q ss_pred             eCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCc
Q 006354          564 TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLP  607 (649)
Q Consensus       564 TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p  607 (649)
                      |||++++.+||.++++||.|+++|++ |+||+++|||..+.++|
T Consensus       600 tgD~~r~~~dg~~e~lgr~D~qvki~-g~Riel~eie~~l~~~~  642 (642)
T COG1020         600 TGDLARPLADGALEYLGRKDSQVKIR-GFRIELGEIEAALAEQP  642 (642)
T ss_pred             CCCeeeECCCCeEEEeccccceeEec-eEecCcHHHHHHHhcCC
Confidence            99999999999999999999999997 99999999999998876

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.4e-38  Score=333.50  Aligned_cols=270  Identities=23%  Similarity=0.346  Sum_probs=214.4

Q ss_pred             CCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCc
Q 006354          271 LPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST  350 (649)
Q Consensus       271 ~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~  350 (649)
                      .+.++|+++|+|||||||.||||+++|+++.+.+......+   ...++++..+|++|..++..++.++..|+++++.+.
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~  107 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL---GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDV  107 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc---CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCc
Confidence            44578999999999999999999999999998887665544   345788999999999999888888999999877322


Q ss_pred             ccccccchhhccCccccceeec--ceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchh
Q 006354          351 LTMTDTSSKIKKGTKGDVSVLK--PTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER  428 (649)
Q Consensus       351 ~~l~~~~~~~~~~~~~~i~~~~--~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  428 (649)
                      ....+.     ..+...+++++  .++...+|..+..+......                                    
T Consensus       108 ~~~~~~-----~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~------------------------------------  146 (358)
T PRK07824        108 SAGFDP-----TALPRAVAELGGGRRYTSLVPMQLAKALDDPAA------------------------------------  146 (358)
T ss_pred             CCCcCH-----HHHHHHHHHhCCCceEEEecHHHHHHHHhCccc------------------------------------
Confidence            111111     11223377777  45666788777655432100                                    


Q ss_pred             hhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCCCCCCccCCCcccceE
Q 006354          429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYI  508 (649)
Q Consensus       429 ~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v  508 (649)
                                  ....+++|.+++||+++++++.+.+.+ +++++++.||+||++..+.          ..|.|++++++
T Consensus       147 ------------~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v  203 (358)
T PRK07824        147 ------------TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV----------YDGVPLDGVRV  203 (358)
T ss_pred             ------------cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC----------cCceeCCCCEE
Confidence                        001138999999999999999988876 4899999999999875432          35899999999


Q ss_pred             EEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEc
Q 006354          509 KLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL  588 (649)
Q Consensus       509 ~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki  588 (649)
                      ++.+               |||+++|+.++.||+++++.+  .|.  .+  |||+|||+|++ +||.++++||.||+||+
T Consensus       204 ~i~~---------------Gei~v~g~~~~~gY~~~~~~~--~~~--~~--g~~~TGDl~~~-~~g~l~i~GR~~d~i~~  261 (358)
T PRK07824        204 RVED---------------GRIALGGPTLAKGYRNPVDPD--PFA--EP--GWFRTDDLGAL-DDGVLTVLGRADDAIST  261 (358)
T ss_pred             EecC---------------CEEEEecCccccccCCCcccc--ccc--CC--CceecccEEEE-eCCEEEEEeccCCeEEE
Confidence            9843               899999999999999988754  343  44  79999999999 89999999999999998


Q ss_pred             CCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhh
Q 006354          589 QHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQ  631 (649)
Q Consensus       589 ~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~  631 (649)
                       +|++|+|.+||++|.+||+|. +|+|++.++...|+.+.++.
T Consensus       262 -~G~~v~p~eIE~~l~~~~~V~-~~~vv~~~~~~~g~~~~a~v  302 (358)
T PRK07824        262 -GGLTVLPQVVEAALATHPAVA-DCAVFGLPDDRLGQRVVAAV  302 (358)
T ss_pred             -CCEEECHHHHHHHHHhCCCcc-eEEEEecCCCCCceEEEEEE
Confidence             599999999999999999999 99999999888776555543

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.98  E-value=1.6e-31  Score=280.71  Aligned_cols=230  Identities=18%  Similarity=0.154  Sum_probs=177.4

Q ss_pred             CCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCC--CCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCc-
Q 006354          275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG--RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGST-  350 (649)
Q Consensus       275 ~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~-  350 (649)
                      +..++++|||||||.||||++||+++.+.+..+...+ ++.  +.|++++.+|++|.+++.. ++.++..|+++++... 
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~  173 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAA  173 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCC
Confidence            4468999999999999999999999999888877776 553  3468999999999988755 6778999999988433 


Q ss_pred             --ccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchh
Q 006354          351 --LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER  428 (649)
Q Consensus       351 --~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  428 (649)
                        ..+.+.           ++.  .|+++++|++++.+.+..    .                                 
T Consensus       174 ~~~~~l~~-----------i~~--~t~~~~~P~~l~~l~~~~----~---------------------------------  203 (386)
T TIGR02372       174 PASGIMRH-----------ARP--GDLIVGTPFIWEQLADLD----Y---------------------------------  203 (386)
T ss_pred             ChHHHHHh-----------hcc--CCEEEECcHHHHHHHhhC----c---------------------------------
Confidence              223222           433  289999999999886520    0                                 


Q ss_pred             hhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCC-ccccccCcccccccccccCCCCCCCCccCCCcccce
Q 006354          429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCY  507 (649)
Q Consensus       429 ~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~  507 (649)
                                    ..+++|. ++||+++++++.+.+++. +. .+++.||+||+++++....     +...|+|+|+++
T Consensus       204 --------------~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~~~p~~~  262 (386)
T TIGR02372       204 --------------RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFRLLPDLA  262 (386)
T ss_pred             --------------CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcccCCCcc
Confidence                          0135675 678999999999998875 54 6999999999987654321     234577777766


Q ss_pred             EEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEE
Q 006354          508 IKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK  587 (649)
Q Consensus       508 v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~ik  587 (649)
                      +++ +  ++.           +   .      |               +.  .|++|||+|+||++|+++|+||+||+||
T Consensus       263 ~~~-~--~~~-----------~---~------g---------------~~--~~~~tgD~g~~d~~G~l~i~GR~dd~Ik  302 (386)
T TIGR02372       263 CFA-D--TLS-----------S---A------G---------------LA--RRLDLQDRLAWDKDGGFTILGRKDEILQ  302 (386)
T ss_pred             ccC-C--Ccc-----------C---C------C---------------cc--ceeecCceEEEcCCCcEEEecccCCEEE
Confidence            543 1  110           0   0      1               11  4889999999999999999999999999


Q ss_pred             cCCceeeeCChhhhHhccCcccccceEEEec
Q 006354          588 LQHGEYISLGKIPSTTTVLPLLFHHIRLWRN  618 (649)
Q Consensus       588 i~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~  618 (649)
                      + +|++|+|.+||++|.+||+|. +|+|+..
T Consensus       303 ~-~G~~V~p~eIE~~l~~~p~V~-~~~v~~~  331 (386)
T TIGR02372       303 V-GGVNVSPGHVRDILERNPRVR-AAAVRLD  331 (386)
T ss_pred             E-CCEEEcHHHHHHHHHcCCCce-EEEEEcC
Confidence            7 599999999999999999999 9988754

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.97  E-value=3.8e-31  Score=284.56  Aligned_cols=267  Identities=17%  Similarity=0.175  Sum_probs=196.2

Q ss_pred             CCCCeEEEEeecCCCCCcceEEechHHHHHHHHHH---HhhCCCCCCCcEEEEccChHHHHH-HHHHHHHHHhCceEEeC
Q 006354          273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI---KTLIPNPGRSDVYLAYLPLAHVLE-LAAESIMLCAGCAIGYG  348 (649)
Q Consensus       273 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~~d~~l~~~pl~h~~~-~~~~~~~l~~G~~l~~~  348 (649)
                      ..+++++++|||||||.||+|.+||+++.......   ...+ ++.++|++++..++.+..+ +...+.++..|++++..
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~-g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  151 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAA-GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI  151 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHc-CCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence            45688999999999999999999999987654433   2334 7888999988766554333 22345577889988764


Q ss_pred             CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchh
Q 006354          349 STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER  428 (649)
Q Consensus       349 ~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  428 (649)
                      +....        ..++..|++++||+++++|+++..|++.........                               
T Consensus       152 ~~~~~--------~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~-------------------------------  192 (422)
T TIGR02155       152 SGGQT--------EKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDP-------------------------------  192 (422)
T ss_pred             CCCCH--------HHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCc-------------------------------
Confidence            33221        112334999999999999999999876432210000                               


Q ss_pred             hhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCccccccc-ccccCCCCCCCCccCCCc--cc
Q 006354          429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG-STFSEWDDPSVGRVGPPV--PC  505 (649)
Q Consensus       429 ~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~-~~~~~~~~~~~~~vG~p~--p~  505 (649)
                                    ...++|.+++||+++++++.+.+++.+|+++++.||+||+++. .... ....   ..|.++  ++
T Consensus       193 --------------~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~-~~~~---~~g~~~~~~~  254 (422)
T TIGR02155       193 --------------AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAME-CVET---QDGLHIWEDH  254 (422)
T ss_pred             --------------ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeec-cccc---CCCceEecCe
Confidence                          0037999999999999999999999999999999999998532 2211 1011   123333  35


Q ss_pred             ceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccC-C-----eEEEE
Q 006354          506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD-G-----CLEII  579 (649)
Q Consensus       506 ~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~d-G-----~l~i~  579 (649)
                      ..++|+|++++..   +++|+.|||++++.            +++.|   +.  +||+|||+++++++ |     .+++.
T Consensus       255 ~~~eivd~~~g~~---v~~Ge~Gelvvt~~------------~~~~~---p~--~ry~TGDl~~~~~~~Gr~~~~~~~i~  314 (422)
T TIGR02155       255 FYPEIIDPHTGEV---LPDGEEGELVFTTL------------TKEAL---PV--IRYRTRDLTRLLPGTARTMRRMDRIT  314 (422)
T ss_pred             eEEEEECCCCCCC---CCCCCeeEEEEecC------------Ccccc---ce--eeEEcCcEEEEECCCCCccccccccc
Confidence            6778999666654   68899999999873            34455   55  79999999999876 4     47899


Q ss_pred             ecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecC
Q 006354          580 DRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNG  619 (649)
Q Consensus       580 GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~  619 (649)
                      ||.||+||++ |++|+|.+||++|.+||+|. ..+.+...
T Consensus       315 GR~~d~i~~~-G~~v~p~eie~~l~~~~~v~-~~~q~~~~  352 (422)
T TIGR02155       315 GRSDDMLIIR-GVNVFPTQLEEVILKMDELS-PHYQLELT  352 (422)
T ss_pred             CccCCeEEEC-CEEECHHHHHHHHHhCcCcC-CCEEEEEE
Confidence            9999999985 99999999999999999997 55555443

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.97  E-value=1.4e-28  Score=265.31  Aligned_cols=454  Identities=15%  Similarity=0.139  Sum_probs=314.4

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHC-CCCCCCEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAAI  160 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~-Gv~~gd~V~i  160 (649)
                      .++.++++++++++||.+|+...           +++      ......+||++|..+|.+++.+|+.. -+++||.|++
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~-----------n~~------~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~L  832 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL-----------NAR------GATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVL  832 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe-----------ccC------CcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEE
Confidence            58999999999999999999875           444      23446799999999999999999987 5899999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCC------HHHHHHHHhhcCceEEEECchhHHHHHHhh--cc--CCCccEEE
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLG------EDALIHSLNETQVTTLICDSKQLKKLSAVS--SS--LKTIKNVI  230 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~------~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~--~~--~~~~~~ii  230 (649)
                      +++++.|++++++||+.+|.+++|+.|...      -..+..+++.+++..|+++.+....+..--  ..  ...+..++
T Consensus       833 my~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~  912 (1363)
T KOG3628|consen  833 MYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLIL  912 (1363)
T ss_pred             EcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhh
Confidence            999999999999999999999999987754      357889999999999999998776654321  10  11122222


Q ss_pred             EecCCCCCccCCCCCCCCCceEeehHHHHhcCC--CCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHH
Q 006354          231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGK--RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK  308 (649)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~  308 (649)
                      .+++...                ++....+...  ....++-..+++.+||+-|.--++|.--||.++|.++++.++...
T Consensus       913 ~~~~~~~----------------t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iK  976 (1363)
T KOG3628|consen  913 VLPKLPE----------------TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIK  976 (1363)
T ss_pred             cccccch----------------hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHH
Confidence            2221110                0111111111  112223445678899999999999999999999999999999999


Q ss_pred             hhCCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHH
Q 006354          309 TLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR  387 (649)
Q Consensus       309 ~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~  387 (649)
                      ..+ .+.++.-++.+++++...|+.. ++...+.|.+.++.+|..+...    +..++..++++++.-++.+-..+....
T Consensus       977 e~~-~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nn----psLll~~i~~~kvkDt~~~~~tln~c~ 1051 (1363)
T KOG3628|consen  977 ETC-QLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENN----PSLLLQIISQYKVKDTYPTYSTLNLCQ 1051 (1363)
T ss_pred             HHH-ccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcC----HHHHHHHHhcccccccchhHHHHHHHH
Confidence            998 7777666777777776677654 7788999999999888888776    555666699999999999998888887


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHh
Q 006354          388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI  467 (649)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~  467 (649)
                      +++..+.+.....                                        ....++ ..++..-+.....+.+-+.+
T Consensus      1052 ~~l~t~~enl~~~----------------------------------------gnn~s~-s~vv~~~~RPr~ali~sf~k 1090 (1363)
T KOG3628|consen 1052 KGLETSVENLSKR----------------------------------------GNNTSS-SIVVPAEERPRIALIASFKK 1090 (1363)
T ss_pred             hccccccchhhhh----------------------------------------hccccc-ceeeecCCccHHHHHHHHHH
Confidence            7655433321110                                        000011 11122222222222222222


Q ss_pred             hc---CC---cc-------------ccccCcccccccc-cccCCCCC-------------CCCccCCCcccceEEEEecC
Q 006354          468 CM---GA---PI-------------GQAYGLTETCAGS-TFSEWDDP-------------SVGRVGPPVPCCYIKLVSWD  514 (649)
Q Consensus       468 ~~---~~---~l-------------~~~YG~TE~~~~~-~~~~~~~~-------------~~~~vG~p~p~~~v~i~d~~  514 (649)
                      .+   |.   .+             .++|...|-+... -.......             .....|...+++++.|++||
T Consensus      1091 lfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPE 1170 (1363)
T KOG3628|consen 1091 LFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPE 1170 (1363)
T ss_pred             HHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCc
Confidence            21   10   01             1233222211110 00000000             01234888899999999988


Q ss_pred             CCCcccCCCCCCccEEEEccccccccccCCCc-cchhhhcc-----CCCcccceeeCcEEEEc------cCC----eEEE
Q 006354          515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG-KTSEVYKV-----DERGMCWFYTGDIGQVY------PDG----CLEI  578 (649)
Q Consensus       515 ~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~-~t~~~f~~-----~~~~~~w~~TGDlg~~~------~dG----~l~i  578 (649)
                      +.+.   |..|+.||||+.|.+-+.+|++..+ .....|..     .-++.+|.||||+|++.      ..|    -||+
T Consensus      1171 tk~p---c~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyV 1247 (1363)
T KOG3628|consen 1171 TKGP---CRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYV 1247 (1363)
T ss_pred             cccc---cccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEE
Confidence            8765   8899999999999999999886422 11222221     12256899999999983      222    3899


Q ss_pred             EecCCCeEEcCCceeeeCChhhhHh-ccCcccccceEEEecC
Q 006354          579 IDRKKDIVKLQHGEYISLGKIPSTT-TVLPLLFHHIRLWRNG  619 (649)
Q Consensus       579 ~GR~dd~iki~~G~~v~~~eIE~~l-~~~p~V~~~~~V~g~~  619 (649)
                      +|-.++.+.++ |.+.+|.+||..+ ..||.|. .|+||.-.
T Consensus      1248 lG~i~EtlEl~-GL~h~p~DIE~TV~~vH~~I~-~cavF~~~ 1287 (1363)
T KOG3628|consen 1248 LGAIDETLELN-GLRHFPSDIETTVERVHPSIG-GCAVFQAT 1287 (1363)
T ss_pred             eecccceeeec-CcccCcchHHHHHHHhccccc-ceeeEeeC
Confidence            99999999996 9999999999988 5799999 99999755

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=3.2e-26  Score=255.85  Aligned_cols=466  Identities=17%  Similarity=0.121  Sum_probs=285.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      -++++.|.+.+...|.+.+..+-...        .       ..+....+||++....++.+++.|...|...|+.|+++
T Consensus        36 g~~~~~~~~~~~~~~~~~~~~~~p~~--------~-------~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~  100 (1032)
T KOG1178|consen   36 GTLEDSFRRELAEAPENTGHVIIPTA--------S-------ESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIY  100 (1032)
T ss_pred             cchhhHHHHHHhhcccCCCceEeecc--------c-------ccccccchhhhhhhcccchhHHHhhhcccccCceEEEe
Confidence            47888999999999999998875322        1       12334568999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCC----HH---HHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLG----ED---ALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN  234 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~----~~---~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~  234 (649)
                      +..+.++++..++++++|.++++++|.++    ++   ++++.+......++  ....  -+........          
T Consensus       101 ~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~--~~l~--i~~~~~~~~~----------  166 (1032)
T KOG1178|consen  101 MLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV--RRLN--IIDILLNSLF----------  166 (1032)
T ss_pred             ccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceeh--hhhh--hHHHHhhccc----------
Confidence            99999999999999999999999999999    33   22222211111111  1000  0000000000          


Q ss_pred             CCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC
Q 006354          235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (649)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~  314 (649)
                               ++..-.....++..+.....  .......-++..|++.||||+||.||+|.-+|..+.+...|+...+ .+
T Consensus       167 ---------~~~sv~~~~~~f~~~~~~~~--~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-~~  234 (1032)
T KOG1178|consen  167 ---------PKLSVETIADSFQMVLHNED--TREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-PP  234 (1032)
T ss_pred             ---------cccchhhccchhhhhhccCC--CcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-Cc
Confidence                     00000000011111111111  1112344567799999999999999999999999999999999998 77


Q ss_pred             CCCcEEEEccCh-HHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHH
Q 006354          315 GRSDVYLAYLPL-AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK  393 (649)
Q Consensus       315 ~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  393 (649)
                      +.++.+-..... +++.-...+.+.|+.|+.+.++.+..--.     +..+...+++++++..+.+|++.++++......
T Consensus       235 t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~-----~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~  309 (1032)
T KOG1178|consen  235 TGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDT-----PGQLASTLERYGITVSHLLPAMCQLLLAILTTS  309 (1032)
T ss_pred             CccchhhhhheeecccchHHHHhhHhhcCceeecccccCccc-----hhhHHHHHHhhhheeeeechhhhhhhhhhcCcc
Confidence            777765223333 23333334556677787776633221110     111222389999999999999999887754321


Q ss_pred             HHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCc
Q 006354          394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAP  472 (649)
Q Consensus       394 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~  472 (649)
                      .....             +...+.              |.+      . --+.|+...++|++....+...+...+ -.-
T Consensus       310 ~~~l~-------------~~~~~~--------------dl~------~-~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~  355 (1032)
T KOG1178|consen  310 LPLLE-------------HAFSLS--------------DLL------T-KRSCLKLVVLGGEPLLVSLYTSTFDLLAEIF  355 (1032)
T ss_pred             hhhhh-------------hhhhcc--------------ccc------c-cchhheeeeecCCccchhhhhhhhhccccee
Confidence            00000             000000              000      0 003799999999999999876333333 222


Q ss_pred             cccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCC-----cc-cCCCCCCccEEEEcccccccccc----
Q 006354          473 IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGG-----YK-TSDKPMPRGEIVVGGFNVTAGYF----  542 (649)
Q Consensus       473 l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~-----~~-~~~~~g~~GEl~v~g~~v~~gY~----  542 (649)
                      ...-|++++.....+.......     +.-+-+..+++++.-...     .. .....+..||.++.+.+++.++.    
T Consensus       356 ~~~~y~s~~~~~~~s~~~~~~s-----~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~  430 (1032)
T KOG1178|consen  356 FGLPYLSTDPTGLVSYDDFSPS-----KVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKGCLGAEQNLSSW  430 (1032)
T ss_pred             eeecccCCCCccceeHHhhCcc-----cceecceeEEeccchhhccCCCcceeeeeccCcccCCcccceeecccccccce
Confidence            2234899988777665543322     111122222222210000     00 00001122233332222222221    


Q ss_pred             -CCCccchhhhccC-----CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEE
Q 006354          543 -NNPGKTSEVYKVD-----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLW  616 (649)
Q Consensus       543 -~~~~~t~~~f~~~-----~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~  616 (649)
                       .+.-.+.+.|.++     ...++.|||||+|+..++|.+.+.||.|++||++ |.|+.++||++++..||.|. ++.++
T Consensus       431 ~~~g~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~r-G~Ri~L~ei~t~v~~~p~v~-~~itl  508 (1032)
T KOG1178|consen  431 VVDGYSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDR-GVRIELGELNTVVEVHPDVK-EAITL  508 (1032)
T ss_pred             eeccccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEc-cEEEehhhhchhhccCcchh-hhhee
Confidence             1111233333221     1124789999999999999999999999999996 99999999999999999999 99999


Q ss_pred             ecCCCCcccchhhhhhhh
Q 006354          617 RNGPMKLASSTKIFQSCV  634 (649)
Q Consensus       617 g~~~~~~~~~~~~~~~~~  634 (649)
                      ...+...++.+.+|....
T Consensus       509 ~~~~~~~~~~l~aFvv~~  526 (1032)
T KOG1178|consen  509 ARENSTVGQTLLAFVVER  526 (1032)
T ss_pred             eeeccccCceEEEEEecc
Confidence            999888787777665543

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.93  E-value=2.3e-25  Score=240.07  Aligned_cols=258  Identities=15%  Similarity=0.101  Sum_probs=184.9

Q ss_pred             CCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC--CCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC
Q 006354          273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS  349 (649)
Q Consensus       273 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~  349 (649)
                      +.++++.+.|||||||.||+|.+||.++..........+  .++.++|+++...|+.+..+... .+.++..|++++...
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~  163 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG  163 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence            457889999999999999999999999877665443321  27888999999988887766544 345677888776532


Q ss_pred             c-ccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchh
Q 006354          350 T-LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER  428 (649)
Q Consensus       350 ~-~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  428 (649)
                      . ....+.           ++++++|.+.++|+.+..+.+........                                
T Consensus       164 ~~~~~~~~-----------i~~~~~t~l~~~ps~ll~La~~~~~~g~~--------------------------------  200 (445)
T TIGR03335       164 KCTFPIRI-----------IESYRPTGIVASVFKLLRLARRMKAEGID--------------------------------  200 (445)
T ss_pred             chhHHHHH-----------HHHhCCCEEEECHHHHHHHHHHHHHcCCC--------------------------------
Confidence            2 222333           88999999999999888776543221000                                


Q ss_pred             hhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCCCCCCccCCCc--ccc
Q 006354          429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPV--PCC  506 (649)
Q Consensus       429 ~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--p~~  506 (649)
                                   ....++|.+++||+++++++.+.+.+.+|+++++.||+||++... .+..      ..|..+  +.+
T Consensus       201 -------------~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~~-~c~~------~~g~h~~~d~~  260 (445)
T TIGR03335       201 -------------PAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMCG-ECQA------VAGLHVPEDLV  260 (445)
T ss_pred             -------------cccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhheE-EecC------CCCccccCCce
Confidence                         000379999999999999999999998999999999999985322 2211      123333  457


Q ss_pred             eEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEcc-C----C----eEE
Q 006354          507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP-D----G----CLE  577 (649)
Q Consensus       507 ~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~-d----G----~l~  577 (649)
                      .+.|+|++++..   +++|+.|||++++-.-.        .+.+.+   +=  --|+|||++++.. +    |    .+.
T Consensus       261 ~vEIvDp~~~~~---vp~Ge~GELvvT~L~~~--------~~r~~~---Pl--iRYrtgD~~~~~~~~~C~CGr~~~r~~  324 (445)
T TIGR03335       261 HLDVYDPRHQRF---LPDGECGRIVLTTLLKP--------GERCGS---LL--INYDTEDTTVVISRDRCPCGRTHMRIL  324 (445)
T ss_pred             EEEEEcCCCCCC---CcCCCceEEEEEecCCC--------CccCCc---eE--EEeecCceEEEecCCCCCCCCCcceeC
Confidence            899999655433   68999999999863211        011112   21  3699999999732 2    2    155


Q ss_pred             EEecCCCeEEcCCceeeeCChhhhHhccC---cccc
Q 006354          578 IIDRKKDIVKLQHGEYISLGKIPSTTTVL---PLLF  610 (649)
Q Consensus       578 i~GR~dd~iki~~G~~v~~~eIE~~l~~~---p~V~  610 (649)
                      ..||.||+++++ |.+|+|.+||++|.++   +++.
T Consensus       325 ~~gR~dd~~~~~-g~~~~p~~ie~~l~~~~~~~~~~  359 (445)
T TIGR03335       325 NPEREAETIWIS-GVPFNRVDVERAVFQRENMDSLT  359 (445)
T ss_pred             CCcccCceEEEC-CEEeCHHHHHHHHhccCCCCCCC
Confidence            679999999996 9999999999999994   5553

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.93  E-value=1.9e-24  Score=210.49  Aligned_cols=221  Identities=13%  Similarity=0.082  Sum_probs=160.7

Q ss_pred             HHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEccCCH
Q 006354           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCV  166 (649)
Q Consensus        88 ~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~  166 (649)
                      ++.+++++|+++|+++.+          |+.       ++.+.+||+||.++++++|+.|++ +|+++||+|+|+++|++
T Consensus         2 ~~~~~~~~p~~~al~~~~----------~~~-------~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~   64 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYD----------DAT-------GERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHW   64 (227)
T ss_pred             hhhhhhhCCCCcEEEEEc----------CCC-------CeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH
Confidence            567889999999998631          110       112469999999999999999998 79999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCC
Q 006354          167 EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGG  246 (649)
Q Consensus       167 ~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~  246 (649)
                      +++++++||+++|++++|++             ++++++++++++..+.+.     .+  +.++.+.......... ...
T Consensus        65 ~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~-~~~  123 (227)
T TIGR03089        65 QTAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRRVA-GEL  123 (227)
T ss_pred             HHHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccCCC-CCC
Confidence            99999999999999999995             789999999988776643     11  2333332110000000 000


Q ss_pred             CCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccCh
Q 006354          247 ISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL  326 (649)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl  326 (649)
                      +.  ...++.+..........+.....++|+|.|+||||+         +|++++...    ... +++++|+++ .+|+
T Consensus       124 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-~l~~~D~~l-~~Pl  186 (227)
T TIGR03089       124 PP--GVIDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-GLPPGDRVL-VLAW  186 (227)
T ss_pred             CC--cccchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-CCCCCCeEE-ecCC
Confidence            11  123555544432222221214567999999999985         677766654    444 789999999 9999


Q ss_pred             HHHHHHHH-HHHHHHhCceEEe---CCcccccccchhhccCccccceeecce
Q 006354          327 AHVLELAA-ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPT  374 (649)
Q Consensus       327 ~h~~~~~~-~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t  374 (649)
                      +|..|+.. ++.+|..|+++++   +++..+++.           |+++|||
T Consensus       187 ~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~-----------i~~~~vT  227 (227)
T TIGR03089       187 TDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQI-----------AETERVT  227 (227)
T ss_pred             CchHHHHHHHHHHhccCceEEEecCCCHHHHHHH-----------HHhhcCC
Confidence            99999875 7789999999998   777777666           8888886

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.86  E-value=1e-20  Score=193.76  Aligned_cols=262  Identities=19%  Similarity=0.151  Sum_probs=189.2

Q ss_pred             CCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC--CCCCCCcEEEEccChHH-HHHHHHHHHHHHhCceEEe
Q 006354          271 LPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPLAH-VLELAAESIMLCAGCAIGY  347 (649)
Q Consensus       271 ~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl~h-~~~~~~~~~~l~~G~~l~~  347 (649)
                      ....++...|--||||||.|+-+.+|+..+......+...+  .+...+|++..+.-+.. ..++..-+++--.|+++.-
T Consensus        86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip  165 (438)
T COG1541          86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP  165 (438)
T ss_pred             cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence            34456667788899999999999999998877766655543  37778887766544221 1122222334446666655


Q ss_pred             CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccch
Q 006354          348 GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLE  427 (649)
Q Consensus       348 ~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  427 (649)
                      .++...        ......++.+++|++.++|+.+..+++.+.+.....                              
T Consensus       166 ~~~g~~--------~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~------------------------------  207 (438)
T COG1541         166 ISGGNT--------ERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDP------------------------------  207 (438)
T ss_pred             cCCccH--------HHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCCh------------------------------
Confidence            443211        112333899999999999999999998766531000                              


Q ss_pred             hhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccc-cccCCCCCCCCccCCCcccc
Q 006354          428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGS-TFSEWDDPSVGRVGPPVPCC  506 (649)
Q Consensus       428 ~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~-~~~~~~~~~~~~vG~p~p~~  506 (649)
                                     .-.+||.+++|+|+++++..+.+.+.+|+..++.||+||..+.. .-+....  ..++  .-.+.
T Consensus       208 ---------------~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~--glhi--~eD~~  268 (438)
T COG1541         208 ---------------DKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN--GLHI--WEDHF  268 (438)
T ss_pred             ---------------hhcceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc--CCCc--chhhc
Confidence                           00389999999999999999999999999999999999987664 2121111  1111  12567


Q ss_pred             eEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccC----Ce-----EE
Q 006354          507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD----GC-----LE  577 (649)
Q Consensus       507 ~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~d----G~-----l~  577 (649)
                      -+.|+||+++.+   ++.|+.|||+++.-            +++.+   +-  --|+|||+..+.++    |.     ..
T Consensus       269 ~~Ei~dP~t~e~---l~dge~GelV~T~L------------~~~~~---Pl--IRYrtgDit~i~~~~C~cGr~~~ri~~  328 (438)
T COG1541         269 IFEIVDPETGEQ---LPDGERGELVITTL------------TKEGM---PL--IRYRTGDITVILSDPCGCGRTHRRIER  328 (438)
T ss_pred             eeeeecCCcCcc---CCCCCeeEEEEEec------------cccCc---ce--EEEEcCCeeEecccCCCCCCccccccc
Confidence            788999888877   67999999998752            22322   33  47999999999763    22     57


Q ss_pred             EEecCCCeEEcCCceeeeCChhhhHhccCcccc
Q 006354          578 IIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLF  610 (649)
Q Consensus       578 i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~  610 (649)
                      +.||.||+++++ |.+|+|..||.+|.+.+.+.
T Consensus       329 I~GR~dD~l~~~-G~~vfp~~ie~~l~~~~~~~  360 (438)
T COG1541         329 IEGRSDDMLIVR-GVNVFPSQIERVLLQIPEVT  360 (438)
T ss_pred             cCcccccEEEEC-CEEeCHHHHHHHHhcccCCC
Confidence            999999999997 99999999999999999887

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.79  E-value=1.6e-18  Score=188.31  Aligned_cols=451  Identities=16%  Similarity=0.143  Sum_probs=296.7

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHH-HHHHCCCCCCCEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFAS-GLVNFGHNVDTRAA  159 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~-~L~~~Gv~~gd~V~  159 (649)
                      ...+..+++.+-.+++...|.++-           |.+       |....+||..+..++.++|+ .|.+-|+.++|+|.
T Consensus        93 ~~d~~avl~~~~nhs~~~ta~i~i-----------d~k-------gk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vv  154 (1363)
T KOG3628|consen   93 LTDIIAVLRYRRNHSATSTAHICI-----------DKK-------GKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVV  154 (1363)
T ss_pred             hcchHHHHHhhccCCCCCceEEEE-----------cCC-------CceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEE
Confidence            456677778777888999998885           333       44578999999999999999 67778999999999


Q ss_pred             EEccCC--HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCC
Q 006354          160 ILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS  237 (649)
Q Consensus       160 i~~~~~--~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~  237 (649)
                      ++...+  .++++..++|..+|.+.+|+.+..+.+++..+++....+++++..................+.+-       
T Consensus       155 L~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~-------  227 (1363)
T KOG3628|consen  155 LYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVA-------  227 (1363)
T ss_pred             EEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHH-------
Confidence            999877  69999999999999999999999999999999999999999998877665544321100000000       


Q ss_pred             CccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC------
Q 006354          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI------  311 (649)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~------  311 (649)
                                 .|...++.-..  ..+ ....+..... ..||-||++++|.--||+.+|+ ++.+.+.+....      
T Consensus       228 -----------~w~t~~~k~~~--~~~-k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~  291 (1363)
T KOG3628|consen  228 -----------WWKTNDFKGNY--TKD-KIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPAR  291 (1363)
T ss_pred             -----------hhhccccccee--ehh-hccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHH
Confidence                       00000010000  000 0011112222 7999999999999999999998 555444332211      


Q ss_pred             -------------CCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEE
Q 006354          312 -------------PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMA  377 (649)
Q Consensus       312 -------------~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~  377 (649)
                                   .+....+.++....+....|++. .+.++++|.|....+.. ++..    +-.+...+.++|.+++.
T Consensus       292 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~-~l~~----pG~~~~l~~k~R~~~~l  366 (1363)
T KOG3628|consen  292 FAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKE-VLKP----PGLIANLITKYRATWSL  366 (1363)
T ss_pred             HHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchh-hcCC----CcchhhhhccceeEEEe
Confidence                         13455677777777777677665 77889999988763322 2222    22344448899999988


Q ss_pred             echHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCC
Q 006354          378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPL  457 (649)
Q Consensus       378 ~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l  457 (649)
                      .-...+.+......+..+                                    ..+.|.+-+..+.+++|.+.+....+
T Consensus       367 td~~~Lkq~~~ny~~~p~------------------------------------a~~s~~k~~t~d~sslk~C~Vtc~~v  410 (1363)
T KOG3628|consen  367 TDYAGLKQPVYNYQEDPK------------------------------------ATLSFKKYKTPDLSSLKGCMVTCTAV  410 (1363)
T ss_pred             ecccccCcccccccCCcc------------------------------------cccchhhccCCCccceeeeEEeeeec
Confidence            765555444332221110                                    01223555666778999999999999


Q ss_pred             CHHHHHHHHhhc----CCc-cccccCc-----------------ccccccccccCCCCC---------------------
Q 006354          458 SADSQRFINICM----GAP-IGQAYGL-----------------TETCAGSTFSEWDDP---------------------  494 (649)
Q Consensus       458 ~~~~~~~~~~~~----~~~-l~~~YG~-----------------TE~~~~~~~~~~~~~---------------------  494 (649)
                      ..+.+.....++    |.. ....|-+                 +|.+...-..+....                     
T Consensus       411 d~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v  490 (1363)
T KOG3628|consen  411 DTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEV  490 (1363)
T ss_pred             chHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEE
Confidence            999766555443    321 2222222                 333332222221000                     


Q ss_pred             ---------CCCccCCCccc-ceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccC--------C
Q 006354          495 ---------SVGRVGPPVPC-CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD--------E  556 (649)
Q Consensus       495 ---------~~~~vG~p~p~-~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~--------~  556 (649)
                               ....+|...|+ +.+.|+++++...   |.++++|||||.++++..+||.-+..|+..|...        +
T Consensus       491 ~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~L---C~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~  567 (1363)
T KOG3628|consen  491 DTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQL---CKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPP  567 (1363)
T ss_pred             cchhhhhhcCccccceecccceEEEEeCCCcccc---cccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCC
Confidence                     11335665555 4555666444433   8999999999999999999999888888877641        1


Q ss_pred             CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChh----------hhHhccCcccccceEEEec
Q 006354          557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI----------PSTTTVLPLLFHHIRLWRN  618 (649)
Q Consensus       557 ~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eI----------E~~l~~~p~V~~~~~V~g~  618 (649)
                      ....+.|||-+|++.+ |.++++|-++|++.--.|.+++..+|          +.+.+..+.|. ++.+|-.
T Consensus       568 ~n~~FmRtGLlGFv~~-gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF-~~saf~~  637 (1363)
T KOG3628|consen  568 SNVPFMRTGLLGFVHN-GKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVF-DVSAFED  637 (1363)
T ss_pred             ccchhhhhcceeeeeC-CeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEE-EEeeeec
Confidence            1236899999999985 55666665555544333777776654          55566678888 8888873

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.51  E-value=4.9e-13  Score=141.24  Aligned_cols=248  Identities=14%  Similarity=0.132  Sum_probs=149.9

Q ss_pred             EEEEeecCCCCCcceEEechHHHHHHHHHHHhhC--CCCCCCcEEEEccCh-HHHHHHHHHHHHHHhCce-EEeCCcccc
Q 006354          278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPL-AHVLELAAESIMLCAGCA-IGYGSTLTM  353 (649)
Q Consensus       278 a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~-l~~~~~~~l  353 (649)
                      ..+..||||||.|-.+..+...............  .++..++++..++.- .+.+      ..+..... +.+++..  
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly------~~~~~~~~~~~~~~l~--  173 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLY------QSVNNRWISLDFFDLL--  173 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHH------HHHHhccceeeecCCC--
Confidence            4566799999999999999887654433332222  244455555554211 1111      11211111 2222221  


Q ss_pred             cccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHH
Q 006354          354 TDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA  433 (649)
Q Consensus       354 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  433 (649)
                       +.    ...++..|++++|+++.+.|+.+..|++...+....                                     
T Consensus       174 -~~----~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-------------------------------------  211 (430)
T TIGR02304       174 -AP----FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-------------------------------------  211 (430)
T ss_pred             -cC----HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-------------------------------------
Confidence             11    222444599999999999999999998864431100                                     


Q ss_pred             HHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEec
Q 006354          434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSW  513 (649)
Q Consensus       434 ~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~  513 (649)
                                 .+++.++++||+++++..+.+++.||+++++.||+|| +.++.-+....   -.+=...--+|..++|+
T Consensus       212 -----------~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~---lHl~ed~~~vE~~ivD~  276 (430)
T TIGR02304       212 -----------IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT---LHLNEDLVHIEKQYLDE  276 (430)
T ss_pred             -----------CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC---EEEccccEEEEeeEECC
Confidence                       1689999999999999999999999999999999999 44433222111   11111111122335662


Q ss_pred             CCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccC----C----eE-EEEecCCC
Q 006354          514 DEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD----G----CL-EIIDRKKD  584 (649)
Q Consensus       514 ~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~d----G----~l-~i~GR~dd  584 (649)
                       ++          .++.+|+      ++.|      ..+   |=  --|+|||++.+.++    |    .| .|.||.+|
T Consensus       277 -~~----------~~~~ViT------~L~n------~~~---Pl--IRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD  328 (430)
T TIGR02304       277 -HK----------RFVPIIT------DFTR------TTQ---PI--VRYRLNDILVESEQPCSCGSATMAIERIEGRQDD  328 (430)
T ss_pred             -CC----------ceEEEEe------cCCC------ccc---eE--EeeeCCCEEEeCCCCCCCCCcccccCCccCccCC
Confidence             22          1233333      2322      112   22  36999999998544    2    24 48899999


Q ss_pred             eEEc--CCceee--eCChhhhHh-ccCcccccceEEEecC
Q 006354          585 IVKL--QHGEYI--SLGKIPSTT-TVLPLLFHHIRLWRNG  619 (649)
Q Consensus       585 ~iki--~~G~~v--~~~eIE~~l-~~~p~V~~~~~V~g~~  619 (649)
                      ++++  .+|..+  +|..++.++ ...+.|. +.-++...
T Consensus       329 ~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~-~yQi~Q~~  367 (430)
T TIGR02304       329 IFQLITRSGDEQTVFPDFIRRVILFTLPLIV-EYRVLQTG  367 (430)
T ss_pred             EEEEecCCCCeEEeCHHHHHHHHHhcCCCCc-eEEEEEcc
Confidence            9995  456555  888898874 5678888 77666544

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.17  E-value=1.8e-11  Score=126.45  Aligned_cols=65  Identities=14%  Similarity=0.105  Sum_probs=60.3

Q ss_pred             cceeeCcEEEE-ccCCeEEEEecCCCeEEcCCc---eeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhh
Q 006354          560 CWFYTGDIGQV-YPDGCLEIIDRKKDIVKLQHG---EYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQS  632 (649)
Q Consensus       560 ~w~~TGDlg~~-~~dG~l~i~GR~dd~iki~~G---~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~  632 (649)
                      |||+|||+|++ |+||+|+|.||.|      +|   ++|+|. ||++|.+||+|. +|+|+|.+++..|+.+.++..
T Consensus       209 gW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~-eaaVvgvpd~~~ge~v~A~Vv  277 (365)
T PRK09188        209 IWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVS-DVAIALFSLPAKGVGLYAFVE  277 (365)
T ss_pred             cEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCcc-EEEEEEEEcCCCCeEEEEEEE
Confidence            89999999998 7999999999998      48   899998 999999999999 999999999999988777654

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.64  E-value=1.4e-06  Score=90.40  Aligned_cols=237  Identities=16%  Similarity=0.157  Sum_probs=130.1

Q ss_pred             CCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC---CCCCC-CcEEEEccChHHH---HHHH--HHHHHHHhCc
Q 006354          273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI---PNPGR-SDVYLAYLPLAHV---LELA--AESIMLCAGC  343 (649)
Q Consensus       273 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~-~d~~l~~~pl~h~---~~~~--~~~~~l~~G~  343 (649)
                      ..+++..++-||||||.|--+.+.+..+..+..++...+   ..... .-.++...|-...   ++..  .....+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            345667788899999998656666666665554443332   12222 2234443343211   1111  1222233444


Q ss_pred             eEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhcccccc
Q 006354          344 AIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGA  423 (649)
Q Consensus       344 ~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  423 (649)
                      ...+ +...+ +... ....+.......++..++++|.++-.+...+.+.....                   .      
T Consensus       167 ~~~l-~~~~l-d~~~-~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~-------------------~------  218 (365)
T PF04443_consen  167 RFAL-DNDEL-DLEG-LIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRF-------------------R------  218 (365)
T ss_pred             eeee-cCCcc-CHHH-HHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcc-------------------c------
Confidence            4333 11111 1100 01111112345678889999987776665433211100                   0      


Q ss_pred             ccchhhhHHHHHHHHHHHHhCCceEEEEecC------CCCCH-HHHHHHHhhcCC----ccccccCcccccccccccCCC
Q 006354          424 WGLERMLWDAIVFKSVRAVLGGRIRFMICGG------APLSA-DSQRFINICMGA----PIGQAYGLTETCAGSTFSEWD  492 (649)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG------~~l~~-~~~~~~~~~~~~----~l~~~YG~TE~~~~~~~~~~~  492 (649)
                                         +....+.+-.||      +.+++ +..+.+++.+|+    .+++.||+||.......+...
T Consensus       219 -------------------L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~  279 (365)
T PF04443_consen  219 -------------------LPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG  279 (365)
T ss_pred             -------------------CCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC
Confidence                               001345666665      35764 567888888887    689999999976543333111


Q ss_pred             CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEcc
Q 006354          493 DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP  572 (649)
Q Consensus       493 ~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~  572 (649)
                      .       .++|-. +.|+|+++..   +++.|+.|-|.+-.+... .               ..  +..-|.|+|.+..
T Consensus       280 ~-------~~~p~w-V~iRDp~tl~---~~~~Ge~Gli~vidl~~~-s---------------~p--~~IlTeDlGvl~~  330 (365)
T PF04443_consen  280 H-------FHVPPW-VIIRDPETLE---PLPPGETGLIQVIDLANT-S---------------YP--GFILTEDLGVLHG  330 (365)
T ss_pred             c-------ccCCCe-EEEECCCCCc---CCCCCCeeEEEEEccccc-C---------------CC--cEEEEcceeeecC
Confidence            1       122333 7777876644   488999999987665332 1               12  4577999998865


Q ss_pred             C--------CeEEEEecCCCe
Q 006354          573 D--------GCLEIIDRKKDI  585 (649)
Q Consensus       573 d--------G~l~i~GR~dd~  585 (649)
                      +        .++.++||.+.-
T Consensus       331 ~~~c~cr~g~~f~vlGR~~~a  351 (365)
T PF04443_consen  331 DDDCGCRKGKYFEVLGRADGA  351 (365)
T ss_pred             CCCCCCccCCEEEEEeCCCCC
Confidence            4        279999998753

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=97.82  E-value=0.0001  Score=80.99  Aligned_cols=149  Identities=18%  Similarity=0.258  Sum_probs=79.7

Q ss_pred             HhCCceEEEEecCCCCCHHHHHHHHhhcC-Cc-cccccCcccccccccccCCCCCCCCccCCCcccc-eEEEEecCCCC-
Q 006354          442 VLGGRIRFMICGGAPLSADSQRFINICMG-AP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC-YIKLVSWDEGG-  517 (649)
Q Consensus       442 ~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~-~~-l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~-~v~i~d~~~~~-  517 (649)
                      .++++|+.|.+-+..-...-.+.++..++ .+ +..+|++||+-......+ ..    ..+...++. -...++.++.+ 
T Consensus       264 ~lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~~-~~----~~~~l~~~~~ffEFip~~~~~~  338 (528)
T PF03321_consen  264 RLWPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLDP-ED----PGYVLAPDSGFFEFIPVDEDEQ  338 (528)
T ss_dssp             HHSTT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES-C-CC------EEE-TTSSEEEEEE-STT--
T ss_pred             HhCCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecCC-CC----CceEeecCCeEEEEEeccCCcc
Confidence            34689997776555444445556666554 33 458999999643333221 11    111222221 23344433221 


Q ss_pred             -------c--ccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEcc--CC--eEEEEecCCC
Q 006354          518 -------Y--KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP--DG--CLEIIDRKKD  584 (649)
Q Consensus       518 -------~--~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~--dG--~l~i~GR~dd  584 (649)
                             .  ...+..|+.=||+|+..   .|.|                  -|+.||+.++..  ++  .|.|+||.+.
T Consensus       339 ~~~~~~~~l~~~ele~G~~YelviTt~---~GLy------------------RY~iGDvVrv~gf~~~~P~i~F~~R~~~  397 (528)
T PF03321_consen  339 NPSEQPKTLLLHELEVGEEYELVITTN---SGLY------------------RYRIGDVVRVTGFYNQTPRIEFVGRRGQ  397 (528)
T ss_dssp             -----SSSEEGGG--TT-EEEEEEEST---TS-S------------------SEEECEEEEEEEEETTEEEEEEEEETTE
T ss_pred             cccCCCceecHHHhcCCCeEEEEEecc---ccee------------------eeecCCEEEEeeccCCCcEEEEeccCCc
Confidence                   1  01145566667777542   2222                  489999999852  44  7999999999


Q ss_pred             eEEcCCceeeeCChhhhHhccC-----cccccceEEEec
Q 006354          585 IVKLQHGEYISLGKIPSTTTVL-----PLLFHHIRLWRN  618 (649)
Q Consensus       585 ~iki~~G~~v~~~eIE~~l~~~-----p~V~~~~~V~g~  618 (649)
                      ++.+. ||+++-.+|++++.+.     -.+. +-.+..+
T Consensus       398 ~l~l~-gEkl~e~~v~~av~~~~~~~~~~~~-~f~~~~~  434 (528)
T PF03321_consen  398 VLSLF-GEKLSEEQVQEAVARALQETGLELR-DFTVAPD  434 (528)
T ss_dssp             EE-SS-S--EEHHHHHHHHHHHHHCTT-EEE-EEEEEEE
T ss_pred             eeecc-eeecCHHHHHHHHHHHHHhcCCcee-eEEEEee
Confidence            99996 9999999999998764     3345 5666655

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.76  E-value=0.002  Score=71.14  Aligned_cols=138  Identities=14%  Similarity=0.257  Sum_probs=78.9

Q ss_pred             HHhCCc---eEEEEecCCCCCHHHHHHHHhhc-CC-ccccccCcccccccccccCCCCCCCCccCCC-cc-cceEEEEec
Q 006354          441 AVLGGR---IRFMICGGAPLSADSQRFINICM-GA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPP-VP-CCYIKLVSW  513 (649)
Q Consensus       441 ~~~g~~---Lr~i~~gG~~l~~~~~~~~~~~~-~~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~p-~~~v~i~d~  513 (649)
                      ..++++   +.++..||..   .-...++..+ +. .+..+|++||+.......+...  +..++.. ++ +.-...++.
T Consensus       298 ~~lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~~--p~~~~~~l~~~~~ffEFiP~  372 (597)
T PLN02249        298 TKIWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPMCK--PSEVSYTIMPNMAYFEFLPH  372 (597)
T ss_pred             HHhCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCCCC--CCCcceEecCCcEEEEeeec
Confidence            456688   6666777755   3344555444 34 3568999999654333221111  1111111 11 223333332


Q ss_pred             CCCC--------c--ccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEcc----CCeEEEE
Q 006354          514 DEGG--------Y--KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP----DGCLEII  579 (649)
Q Consensus       514 ~~~~--------~--~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~----dG~l~i~  579 (649)
                      ++.+        .  ...+..|..=||+|+..   .|-|                  -|+.||+.++..    --.|.|+
T Consensus       373 ~~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~---~GLy------------------RY~iGDvVrvtgf~~~~P~i~F~  431 (597)
T PLN02249        373 NHDGDGALDETSLVELADVEVGKEYELVITTY---AGLY------------------RYRVGDILRVTGFHNSAPQFKFI  431 (597)
T ss_pred             ccCCcccCCCCcEecHHHcCCCCeEEEEEEcc---ccee------------------EeecCCEEEEeeccCCCcEEEEE
Confidence            2110        0  01144455556666431   1111                  388999999853    3469999


Q ss_pred             ecCCCeEEcCCceeeeCChhhhHhcc
Q 006354          580 DRKKDIVKLQHGEYISLGKIPSTTTV  605 (649)
Q Consensus       580 GR~dd~iki~~G~~v~~~eIE~~l~~  605 (649)
                      ||.+.++.+ .|+++.-.+++.++.+
T Consensus       432 gR~~~~ls~-~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        432 RRKNVLLSI-ESDKTDEADLQKAVEN  456 (597)
T ss_pred             ccCCcceec-ccccCCHHHHHHHHHH
Confidence            999999998 4999999999998866

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.63  E-value=0.0023  Score=70.22  Aligned_cols=142  Identities=18%  Similarity=0.174  Sum_probs=85.4

Q ss_pred             HHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccc-cccCcccccccccccCCCCCCCCccCCCcccce-EEEEecCCCC
Q 006354          441 AVLGGRIRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCY-IKLVSWDEGG  517 (649)
Q Consensus       441 ~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~-v~i~d~~~~~  517 (649)
                      ..+++++++|.+--..-...-...++... |+++. -.||+||+.+.....+..+... .....+|++. ...++.++++
T Consensus       289 ~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~~-~sy~L~p~~~yFEFip~~~~~  367 (606)
T PLN02247        289 KRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPSD-VSYTLLPNMAYFEFLPVDKNN  367 (606)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCccC-CceeecCCcEEEEEeecCCCc
Confidence            56779999998865555555556666544 56655 6999999765554443321111 1222334432 2334322221


Q ss_pred             c--------------------------ccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEc
Q 006354          518 Y--------------------------KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY  571 (649)
Q Consensus       518 ~--------------------------~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~  571 (649)
                      .                          ...+..|..=||+|+.-   .|.                  =-||.||+.++.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~---~GL------------------YRYrlGDvv~V~  426 (606)
T PLN02247        368 GEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTF---TGL------------------YRYRVGDILMVT  426 (606)
T ss_pred             ccccccccccccccccccccccCceecHHHccCCCeEEEEEEec---Cce------------------EEEecCCEEEEe
Confidence            0                          00134444556655421   111                  147899999874


Q ss_pred             ----cCCeEEEEecCCCeEEcCCceeeeCChhhhHhcc
Q 006354          572 ----PDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTV  605 (649)
Q Consensus       572 ----~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~  605 (649)
                          ..-.|.|++|.+.+..+ .|++.+-.++-.++.+
T Consensus       427 GF~n~~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        427 GFYNNAPQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             eecCCCceEEEEecCCceeec-ccccCCHHHHHHHHHH
Confidence                34579999999999999 4999999998877755

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.52  E-value=0.0073  Score=66.21  Aligned_cols=142  Identities=15%  Similarity=0.141  Sum_probs=84.3

Q ss_pred             HHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccc-cccCcccccccccccCCCCCCCCccCCCcccceE-EEEecCCCC
Q 006354          441 AVLGGRIRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYI-KLVSWDEGG  517 (649)
Q Consensus       441 ~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v-~i~d~~~~~  517 (649)
                      ..+++++++|.+-...-...-...++... |++++ -.|++||+.+.....+..+... .....+|++.. ..++.++.+
T Consensus       300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p~~-~sy~L~p~~~yFEFip~~~~~  378 (612)
T PLN02620        300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSE-VSYTLIPTMAYFEFLPVHRNN  378 (612)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCCCCccc-ceeeecCCcEEEEEeeccCcc
Confidence            56789999988865555555555555444 56654 8999999765554444322111 11222344322 233211100


Q ss_pred             ---------------------cccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEc----c
Q 006354          518 ---------------------YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY----P  572 (649)
Q Consensus       518 ---------------------~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~----~  572 (649)
                                           ....+..|..=||+|+..   .|.                  =-||.||+.++.    .
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~---~GL------------------yRYrlGDvv~V~Gf~n~  437 (612)
T PLN02620        379 GVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTY---AGL------------------YRYRVGDVLRVAGFKNK  437 (612)
T ss_pred             cccccccccccccccccCccccHHHccCCCeEEEEEEec---Cce------------------EEEecCCEEEEeeecCC
Confidence                                 001134455556665431   111                  147899999884    3


Q ss_pred             CCeEEEEecCCCeEEcCCceeeeCChhhhHhcc
Q 006354          573 DGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTV  605 (649)
Q Consensus       573 dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~  605 (649)
                      .-.|.|++|.+-+..+ .|++.+-.++-.++.+
T Consensus       438 ~P~~~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~  469 (612)
T PLN02620        438 APQFSFICRKNVVLSI-DSDKTDEVELQNAVKN  469 (612)
T ss_pred             CceEEEEeecCceeec-ccccCCHHHHHHHHHH
Confidence            4579999999999998 5999999998777754

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=95.60  E-value=0.0018  Score=50.49  Aligned_cols=34  Identities=12%  Similarity=-0.033  Sum_probs=29.6

Q ss_pred             hhhhHhccCcccccceEEEecCCCCcccchhhhhh
Q 006354          598 KIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQS  632 (649)
Q Consensus       598 eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~  632 (649)
                      |||++|.+||+|. +|+|++.+++..|+.+.++..
T Consensus         1 EIE~~l~~~~~V~-~~~V~~~~d~~~g~~l~a~vv   34 (73)
T PF13193_consen    1 EIESVLRQHPGVA-EAAVVGVPDEDWGERLVAFVV   34 (73)
T ss_dssp             HHHHHHHTSTTEE-EEEEEEEEETTTEEEEEEEEE
T ss_pred             CHHHHHhcCCCcc-EEEEEEEEcccccccceeEEE
Confidence            7999999999999 999999999988876665553

...

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=94.01  E-value=0.68  Score=48.90  Aligned_cols=92  Identities=14%  Similarity=0.030  Sum_probs=77.4

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCH--HHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEE
Q 006354          129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL  206 (649)
Q Consensus       129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  206 (649)
                      --+|+.++...+..+|+.|...|..+||+|.++.--+.  .-+-..+|+.++|+.++|+.+.. -++...++++.++.++
T Consensus       108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l~~df~~tvI  186 (438)
T COG1541         108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLELMKDFKPTVI  186 (438)
T ss_pred             eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHHHHhcCCcEE
Confidence            35899999999999999999999999999998877332  22678899999999999998843 4666788999999999


Q ss_pred             EECchhHHHHHHhhc
Q 006354          207 ICDSKQLKKLSAVSS  221 (649)
Q Consensus       207 i~~~~~~~~l~~~~~  221 (649)
                      .+.+..+-.+.+...
T Consensus       187 ~~tps~~l~lae~~~  201 (438)
T COG1541         187 AATPSYLLYLAEEAE  201 (438)
T ss_pred             EEChHHHHHHHHHHH
Confidence            999998877766543

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=88.18  E-value=5.4  Score=42.83  Aligned_cols=88  Identities=11%  Similarity=0.033  Sum_probs=68.8

Q ss_pred             EEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCH--HHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEE
Q 006354          130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI  207 (649)
Q Consensus       130 ~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi  207 (649)
                      .+|..++......++..+...|+++||++......+.  ......++..+.|+..+++.+.. .+.+...|++.++++++
T Consensus        94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~  172 (422)
T TIGR02155        94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM  172 (422)
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence            4688888777777888888889999999887665443  22334677889999999887654 57788999999999999


Q ss_pred             ECchhHHHHHH
Q 006354          208 CDSKQLKKLSA  218 (649)
Q Consensus       208 ~~~~~~~~l~~  218 (649)
                      +.+..+..+.+
T Consensus       173 ~~Ps~l~~L~~  183 (422)
T TIGR02155       173 VTPSYMLNLLE  183 (422)
T ss_pred             EcHHHHHHHHH
Confidence            99988766654

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=87.94  E-value=6.2  Score=42.75  Aligned_cols=86  Identities=14%  Similarity=0.105  Sum_probs=66.4

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH--HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEE
Q 006354          129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL  206 (649)
Q Consensus       129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  206 (649)
                      ..+|.+++...+...+..+...|+.+||++.++.+.+..  .....+++.+.|+.++|...   .+....++++.++..+
T Consensus       104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l  180 (445)
T TIGR03335       104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI  180 (445)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence            457999999888888988888999999999999876643  23456788999998887643   2345678899999999


Q ss_pred             EECchhHHHHH
Q 006354          207 ICDSKQLKKLS  217 (649)
Q Consensus       207 i~~~~~~~~l~  217 (649)
                      +........+.
T Consensus       181 ~~~ps~ll~La  191 (445)
T TIGR03335       181 VASVFKLLRLA  191 (445)
T ss_pred             EECHHHHHHHH
Confidence            88776654443

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	649
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		6e-16
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-13
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-12
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-12
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-12
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-12
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		7e-12
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-11
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		4e-11
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		5e-11
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		5e-11
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		5e-11
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		9e-11
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-10
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-10
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		1e-10
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		1e-10
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-10
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		1e-07
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		2e-07
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		3e-07
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		5e-06
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		1e-05
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		2e-05
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		3e-05
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		1e-04
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		3e-04
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		8e-04

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 190/506 (37%), Gaps = 118/506 (23%)
Query: 117 GRK--FEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQG 174
           GRK    +LH G+    TY EV+ RA     GL   G  V  R A L         A+  
Sbjct: 32  GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91
Query: 175 CFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFEN 234
                  + T    L    + + LN  +   L+ D               T+++ +  + 
Sbjct: 92  VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDE 151
Query: 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
              E                 +  E LG+ +  DP    +     + YT+G+TGLPKGV+
Sbjct: 152 KAPE--------------GYLAYEEALGEEA--DPVRVPERAACGMAYTTGTTGLPKGVV 195
Query: 295 ITHGNIVATAAAIKTLIPNPGRS--DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352
            +H  +V  + A  +L+     S  DV L  +P+ HV           A C + Y +TL 
Sbjct: 196 YSHRALVLHSLA-ASLVDGTALSEKDVVLPVVPMFHV----------NAWC-LPYAATLV 243
Query: 353 MTDTSSKIKKGTKGDVSVLKP-------TLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLF 405
               + ++  G + D + L         T  A VP ++                L   L 
Sbjct: 244 ---GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW--------------LALADYLE 286
Query: 406 NIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465
           + G++                          K++R       R ++ G A   +   RF 
Sbjct: 287 STGHR-------------------------LKTLR-------RLVVGGSAAPRSLIARFE 314
Query: 466 NICMGAPIGQAYGLTETCAG----------STFSEWDDPSV-GRVGPPVPCCYIKLVSWD 514
              MG  + Q YGLTET              + SE +  ++  + G P+P   +++   D
Sbjct: 315 R--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA--D 370
Query: 515 EGGYKTSDKPMPR-----GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQ 569
           E G     +P+P+     GE+ + G  +T GY+ N   T      D     +F TGDI  
Sbjct: 371 EEG-----RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPD----GFFRTGDIAV 421
Query: 570 VYPDGCLEIIDRKKDIVKLQHGEYIS 595
              +G +EI DR KD++K   GE+IS
Sbjct: 422 WDEEGYVEIKDRLKDLIK-SGGEWIS 446

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 142/338 (42%), Gaps = 98/338 (28%)
Query: 273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG----RSDVYLAYLPLAH 328
           S + V  + Y+SG+TGLPKGVM+TH  +V T+ A +    NP       DV L  LP+ H
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLV-TSVAQQVDGENPNLYFHSDDVILCVLPMFH 281
Query: 329 VLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPTLMAAVPA 381
           +  L   SIMLC G  +G  + L M           K ++++L       K T+   VP 
Sbjct: 282 IYAL--NSIMLC-GLRVG-AAILIM----------PKFEINLLLELIQRCKVTVAPMVPP 327
Query: 382 IFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441
           I                              LA  + S    + L           S+R 
Sbjct: 328 IV-----------------------------LAIAKSSETEKYDL----------SSIRV 348
Query: 442 VLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEWDDPSVGRVG 500
           V  G         APL  + +  +N     A +GQ YG+TE  AG   +     S+G   
Sbjct: 349 VKSG--------AAPLGKELEDAVNAKFPNAKLGQGYGMTE--AGPVLAM----SLGFAK 394
Query: 501 PPVPC-----------CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549
            P P              +K+V  D G   + ++P   GEI + G  +  GY NNP  T+
Sbjct: 395 EPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP---GEICIRGHQIMKGYLNNPAATA 451
Query: 550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           E   +D+ G  W +TGDIG +  D  L I+DR K+++K
Sbjct: 452 ET--IDKDG--WLHTGDIGLIDDDDELFIVDRLKELIK 485

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
           GGAPLS +    +      P + Q YGLTET +    +   D   G  G  VP    K++
Sbjct: 317 GGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVI 376
Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY 571
             D    K S  P  RGE+ V G  +  GY NNP  T E+  +DE G  W +TGDIG   
Sbjct: 377 DLDT---KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIGYYD 429
Query: 572 PDGCLEIIDRKKDIVKLQ 589
            +    I+DR K ++K +
Sbjct: 430 EEKHFFIVDRLKSLIKYK 447

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
           GGAPLS +    +      P + Q YGLTET +    +   D   G  G  VP    K++
Sbjct: 317 GGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVI 376
Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY 571
             D    K S  P  RGE+ V G  +  GY NNP  T E+  +DE G  W +TGDIG   
Sbjct: 377 DLDT---KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIGYYD 429
Query: 572 PDGCLEIIDRKKDIVKLQ 589
            +    I+DR K ++K +
Sbjct: 430 EEKHFFIVDRLKSLIKYK 447

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
           GGAPLS +    +      P + Q YGLTET +    +   D   G  G  VP    K++
Sbjct: 317 GGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVI 376
Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY 571
             D    K S  P  RGE+ V G  +  GY NNP  T E+  +DE G  W +TGDIG   
Sbjct: 377 DLDT---KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIGYYD 429
Query: 572 PDGCLEIIDRKKDIVKLQ 589
            +    I+DR K ++K +
Sbjct: 430 EEKHFFIVDRLKSLIKYK 447

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
           G  R  I G APL AD+ R  +   G  + + YG TET   ++     D   G VGP +P
Sbjct: 268 GHXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALP 327
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
               ++   + G      K +PRG+   I V G NV  GY+  P KT   ++ D     +
Sbjct: 328 GVSARVTDPETG------KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDD----GF 377
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIV 586
           F TGD+G++   G + I+ R KD+V
Sbjct: 378 FITGDLGKIDERGYVHILGRGKDLV 402

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 126/324 (38%), Gaps = 62/324 (19%)
Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESI 337
           A+++YTSG+TG PKG +I    +  T  A+       G  DV +  LPL HV  L    +
Sbjct: 158 ALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG-EDVLVQGLPLFHVHGLVLGIL 216
Query: 338 -MLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXX 396
             L  G ++ +    +    + ++  G          T++  VP ++ R+          
Sbjct: 217 GPLRRGGSVRHLGRFSTEGAARELNDGA---------TMLFGVPTMYHRI---------- 257
Query: 397 XXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAP 456
                                         E +  D  + K++        R ++ G A 
Sbjct: 258 -----------------------------AETLPADPELAKALAGA-----RLLVSGSAA 283
Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEG 516
           L       I    G  + + YG+TET   ++     +P  G VG P+P   ++LV  D  
Sbjct: 284 LPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGT 343
Query: 517 GYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCL 576
                D     GEI V G N+   Y N P  T+  +  D     +F TGD+    PDG +
Sbjct: 344 PIAALDGES-VGEIQVRGPNLFTEYLNRPDATAAAFTED----GFFRTGDMAVRDPDGYV 398
Query: 577 EIIDRKK-DIVKLQHGEYISLGKI 599
            I+ RK  D++K   G  I  G+I
Sbjct: 399 RIVGRKATDLIK-SGGYKIGAGEI 421

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 106/466 (22%), Positives = 172/466 (36%), Gaps = 76/466 (16%)
Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
           E   + E+ +     ASG+   G        +     +++       +R + T V I   
Sbjct: 51  ESXNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPX 110
Query: 189 LGEDALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGIS 248
                L H LN+++ TTL+                   K V+  E  G E+   V G   
Sbjct: 111 YKSFELEHILNDSEATTLVVHSXLYE----------NFKPVL--EKTGVERVFVVGG--- 155
Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
              V+S SEV   G     +  +  +  VA+I YT G+TG PKGV +TH N+ A A  + 
Sbjct: 156 --EVNSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQL- 212
Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
            +       D  +   P  H  E    ++ +  G              +  I+K      
Sbjct: 213 AVATGLSHXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEK------ 266
Query: 369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
              K T   AVP   + +              +   ++  Y +  A       GAW +  
Sbjct: 267 --YKGTFSWAVPPALNVLVNTLES--------SNKTYDWSYLKVFAT------GAWPVAP 310
Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
            L + ++  +       R+R                          Q +G TE C   T 
Sbjct: 311 ALVEKLLKLAAEKCNNPRLRH------------------------NQIWGXTEACPXVTT 346
Query: 489 SE--WDDPSVGRVGPPVPCCYIKLVSWDEG---GYKTSDKPMPRGEIVVGGFNVTAGYFN 543
           +     D S  + G P     +K++S ++G   G   S      GEIV+ G N+  GY+ 
Sbjct: 347 NPPLRLDKSTTQ-GVPXSDIELKVISLEDGRELGVGES------GEIVIRGPNIFKGYWK 399
Query: 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQ 589
              +  E +  DE+G  +F TGD+G +  +G L   DR K+++K +
Sbjct: 400 REKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510
            GGAPLS +    +      P I Q YGLTET +    +   D   G VG  VP    K+
Sbjct: 314 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKV 373
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
           V  D G     ++   RGE+ V G  + +GY NNP  T+ +  +D+ G  W ++GDI   
Sbjct: 374 VDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIAYW 426
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLF 610
             D    I+DR K ++K + G  ++  ++ S     P +F
Sbjct: 427 DEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIF 465

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510
            GGAPLS +    +      P I Q YGLTET +    +   D   G VG  VP    K+
Sbjct: 314 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKV 373
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
           V  D G     ++   RGE+ V G  + +GY NNP  T+ +  +D+ G  W ++GDI   
Sbjct: 374 VDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIAYW 426
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLF 610
             D    I+DR K ++K + G  ++  ++ S     P +F
Sbjct: 427 DEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIF 465

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510
            GGAPLS +    +      P I Q YGLTET +    +   D   G VG  VP    K+
Sbjct: 319 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKV 378
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
           V  D G     ++   RGE+ V G  + +GY NNP  T+ +  +D+ G  W ++GDI   
Sbjct: 379 VDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIAYW 431
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLF 610
             D    I+DR K ++K + G  ++  ++ S     P +F
Sbjct: 432 DEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIF 470

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510
            GGAPLS +    +      P I Q YGLTET +    +   D   G VG  VP    K+
Sbjct: 319 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAKV 378
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
           V  D G     ++   RGE+ V G  + +GY NNP  T+ +  +D+ G  W ++GDI   
Sbjct: 379 VDLDTGKTLGVNQ---RGELSVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIAYW 431
Query: 571 YPDGCLEIIDRKKDIVKLQ 589
             D    I+DR K ++K +
Sbjct: 432 DEDEHFFIVDRLKSLIKYK 450

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 105/464 (22%), Positives = 167/464 (35%), Gaps = 100/464 (21%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ +   RA   ASGL+  G +   R AIL++ C E              ++ +   L  
Sbjct: 33  THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNA 92
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
           D +   L +   + ++                  +K   Y   DGS              
Sbjct: 93  DEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKA-YAIGDGS-------------- 137
Query: 252 VSSFSEVEKLGKRSPVD-PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
              F+  + L   +P   P   + +G  VI++T+   G P+G +I+ GN++   +++   
Sbjct: 138 -GPFAPFKDLASDTPFSAPEFGAADGF-VIIHTAAVGGRPRGALISQGNLLIAQSSLVDA 195
Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
                 +DV L  LPL HV  L    +ML    A G        D +   +     D+  
Sbjct: 196 W-RLTEADVNLGMLPLFHVTGL---GLMLTLQQAGGASVIAAKFDPAQAAR-----DIEA 246
Query: 371 LKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
            K T+MA                      +  N+ +     +LA                
Sbjct: 247 HKVTVMAEF------------------APMLGNILDQAAPAQLA---------------- 272
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSE 490
                  S+RAV G      I          +RF   C  A     +G +ET   STF+ 
Sbjct: 273 -------SLRAVTGLDTPETI----------ERFEATCPNATFWATFGQSETSGLSTFAP 315
Query: 491 WDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNP 545
           + D   S GR     P  +  +   D       D+P+P GE   IV+ G  V  GY+NN 
Sbjct: 316 YRDRPKSAGR-----PLFWRTVAVVD-----AEDRPLPPGEVGEIVLRGPTVFKGYWNNA 365
Query: 546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDR--KKDIVK 587
             T   ++       W +TGD+G+   DG L    R  +K+++K
Sbjct: 366 AATQHAFR-----NGWHHTGDMGRFDADGYLFYAGRAPEKELIK 404

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
           G +R  I G APL AD+ R  +   G  + + YG+TET   ++     D   G VGP +P
Sbjct: 268 GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALP 327
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
               ++   + G        +PRG+   I V G NV  GY+  P  T   ++ D     +
Sbjct: 328 GVSARVTDPETG------XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDD----GF 377
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIV 586
           F TGD+G +   G + I+ R  D+V
Sbjct: 378 FITGDLGXIDERGYVHILGRGXDLV 402

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
           G +R  I G APL AD+ R  +   G  + + YG+TET   ++     D   G VGP +P
Sbjct: 268 GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALP 327
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
               ++   + G        +PRG+   I V G NV  GY+  P  T   ++ D     +
Sbjct: 328 GVSARVTDPETG------XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDD----GF 377
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIV 586
           F TGD+G +   G + I+ R  D+V
Sbjct: 378 FITGDLGXIDERGYVHILGRGXDLV 402

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
           G +R  I G APL AD+ R  +   G  + + YG+TET   ++     D   G VGP +P
Sbjct: 268 GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALP 327
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
               ++   + G        +PRG+   I V G NV  GY+  P  T   ++ D     +
Sbjct: 328 GVSARVTDPETG------XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDD----GF 377
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIV 586
           F TGD+G +   G + I+ R  D+V
Sbjct: 378 FITGDLGXIDERGYVHILGRGXDLV 402

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 135/327 (41%), Gaps = 76/327 (23%)
Query: 273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG----RSDVYLAYLPLAH 328
           S + V  + Y+SG+TGLPKGVM+TH  ++ T+ A +    NP       DV L  LP+ H
Sbjct: 176 SPDDVVALPYSSGTTGLPKGVMLTHKGLI-TSVAQQVDGDNPNLYFHSEDVILCVLPMFH 234
Query: 329 VLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT-KGDVSVLKPTLMAAVPAIFDRVR 387
           +  L   SIMLC G  +G    L M     K + G+  G +   K ++   VP +   + 
Sbjct: 235 IYAL--NSIMLC-GLRVG-APILIM----PKFEIGSLLGLIEKYKVSIAPVVPPVMMSIA 286
Query: 388 XXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRI 447
                                 K  L+++     G   L + L D +  K  +A L    
Sbjct: 287 KSPDLD----------------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARL---- 326
Query: 448 RFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFS-------EWDDPSVGRVG 500
                                     GQ YG+TE  AG   +       E  D   G  G
Sbjct: 327 --------------------------GQGYGMTE--AGPVLAMCLAFAKEPFDIKPGACG 358
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
             V    +K+V  + G     ++P   GEI + G  +  GY N+P  TS    +D+ G  
Sbjct: 359 TVVRNAEMKIVDPETGASLPRNQP---GEICIRGDQIMKGYLNDPEATSRT--IDKEG-- 411
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           W +TGDIG +  D  L I+DR K+++K
Sbjct: 412 WLHTGDIGYIDDDDELFIVDRLKELIK 438

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Query: 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFS-EWDDPSVGRVGPPVPCCYIKL 510
           GGAPL+ +    +      P I Q YGLTET +    +    D   G  G  VP    K+
Sbjct: 349 GGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKI 408
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
           V  D G     ++   RGE+ V G  +  GY NNP  TS +  +D+ G  W ++GDI   
Sbjct: 409 VDLDTGKTLGVNQ---RGELCVKGPMIMKGYVNNPEATSAL--IDKDG--WLHSGDIAYY 461
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLF 610
             DG   I+DR K ++K + G  +   ++ S     P +F
Sbjct: 462 DKDGYFFIVDRLKSLIKYK-GYQVPPAELESILLQHPFIF 500

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 448 RFMICGGAPLSADSQRFINICMGAPIG--QAYGLTETCAGSTFSEWDDP--SVGRVGPPV 503
           R+ I GGAP+    +  I I     I   Q Y LTE+C G T    +D     G  G   
Sbjct: 287 RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRAT 343
Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFY 563
               +  V  D+G  +   +    GE+V+    +   Y+N P  T + +   + G  WF 
Sbjct: 344 MFTDVA-VRGDDGVIREHGE----GEVVIKSDILLKEYWNRPEATRDAF---DNG--WFR 393
Query: 564 TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLP 607
           TGDIG++  +G L I DR KD++ +  GE +   +I S    +P
Sbjct: 394 TGDIGEIDDEGYLYIKDRLKDMI-ISGGENVYPAEIESVIIGVP 436

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 99/493 (20%), Positives = 167/493 (33%), Gaps = 97/493 (19%)
Query: 115 SDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQG 174
           ++ R  +  ++ D    TYGE+ +RA  FAS L   G + + R  ++    V   +AF G
Sbjct: 33  NETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLG 92
Query: 175 CFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFEN 234
                +  V   + L     ++ L  +    +I                         E+
Sbjct: 93  ALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA---------EH 143
Query: 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQ------------NGVAVIMY 282
           DG +             VS   E E   + +P+   L               + +A  +Y
Sbjct: 144 DGCQ-----------LIVSQPRESEP--RLAPLFEELIDAAAPAAKAAATGCDDIAFWLY 190
Query: 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG 342
           +SGSTG PKG + TH N+  TA      I     +DV  +           A  +    G
Sbjct: 191 SSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFS-----------AAKLFFAYG 239
Query: 343 CAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTK 402
             +G G T  ++  ++ I    +     +   L+   P +F                   
Sbjct: 240 --LGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVF------------------- 278
Query: 403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQ 462
                                +G+  +  + +V  ++ A     IR     G  L  +  
Sbjct: 279 ---------------------YGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIG 317
Query: 463 RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSD 522
                  G  I    G TE       +       G  G PVP   I+L   DE G+   D
Sbjct: 318 ERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIEL--RDEAGHAVPD 375
Query: 523 KPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRK 582
             +  G++ + G +    Y+NN  K+   +  +     W  +GD     P+GC     R 
Sbjct: 376 GEV--GDLYIKGPSAAVMYWNNREKSRATFLGE-----WIRSGDKYCRLPNGCYVYAGRS 428
Query: 583 KDIVKLQHGEYIS 595
            D++K+  G+Y+S
Sbjct: 429 DDMLKVS-GQYVS 440

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 100/491 (20%), Positives = 176/491 (35%), Gaps = 106/491 (21%)
Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
           E  TY  ++  A   A  L  +     +R  +  +  ++  I    C+  +I +  I + 
Sbjct: 25  ESYTYQNLYCEASLLAKRLKAYQQ---SRVGLYIDNSIQSIILIHACWLANIEIAMINTR 81
Query: 189 LGEDALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGS-----EKDSGV 243
           L  + + + +    V  + C                ++ ++ +   D +     +   G+
Sbjct: 82  LTPNEMTNQMRSIDVQLIFC----TLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGI 137
Query: 244 SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQN--GVAVIMYTSGSTGLPKGVMITHGNIV 301
               SN TV        + K SP +    S N   +A IM+TSG+TG  K V  T  N  
Sbjct: 138 QYDTSNETV--------VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHY 189
Query: 302 ATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIK 361
           A+A   K  +    R   +L+ LP+ H+  L+     +  G  +            + IK
Sbjct: 190 ASAIGCKESL-GFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIK 248
Query: 362 KGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWF 421
                 +S++  TL                                           +W 
Sbjct: 249 NERITHISLVPQTL-------------------------------------------NWL 265
Query: 422 GAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE 481
              GL                    ++ ++ GGA LSA +     +    PI  ++G+TE
Sbjct: 266 MQQGLHEPY---------------NLQKILLGGAKLSA-TMIETALQYNLPIYNSFGMTE 309
Query: 482 TCAG--STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA 539
           TC+   +   E        VG P     +K+ + ++ G+         GE+++ G NV  
Sbjct: 310 TCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH---------GELMIKGANVMN 360
Query: 540 GYFNNPGKTSEVYKVDERGMC---WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596
           GY         +Y  D  G     +F TGDI ++  +G + I DR+KD++ +  GE I  
Sbjct: 361 GY---------LYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI-ISGGENIYP 410
Query: 597 GKIPSTTTVLP 607
            +I +     P
Sbjct: 411 YQIETVAKQFP 421

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST-FSEWDDPSVGRVGPPVPC 505
           ++ +  GGA       R +   +   + Q +G+ E     T   + D+      G P+  
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISS 368
Query: 506 C-YIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
              IK+V  DE       + +P GEI      G     GY+ +P   S+V+  D     +
Sbjct: 369 DDEIKIV--DE-----QYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDN----Y 417
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFH 611
           +Y+GD+ Q  PDG L ++ R KD +  + GE I+  +I     + P + H
Sbjct: 418 YYSGDLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHPEVMH 466

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 103/494 (20%), Positives = 173/494 (35%), Gaps = 99/494 (20%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           G+  W +Y E+  RA   A+G    G     R  +      E+F      FR     V  
Sbjct: 47  GNTHW-SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105
Query: 186 YSSLGEDALIHSLNETQVTTLICDXXXX-----XXXXXXXXXXXTIKNVIYFENDGSEKD 240
             S     + +     +    I                      T+KN+I          
Sbjct: 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII---------- 155
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN- 299
             V+G         F  +E L       P + S + VA +  + GSTGL K +  TH + 
Sbjct: 156 --VAG-----EAEEFLPLEDLHTEPVKLPEVKSSD-VAFLQLSGGSTGLSKLIPRTHDDY 207
Query: 300 IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM--LCAGCAIGYGSTLTMTDTS 357
           I +   +++    +   S VYLA LP+AH   L++  ++  L AG  +    + +  D  
Sbjct: 208 IYSLKRSVEVCWLD--HSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAF 265
Query: 358 SKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVE 417
             I++         K T+ A VP +                                   
Sbjct: 266 PLIERE--------KVTITALVPPL----------------------------------- 282
Query: 418 GSWFGAWGLERMLW-DAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476
                      M+W DA    S R      ++ +  GGA  SA++ R +    G  + Q 
Sbjct: 283 ----------AMVWMDA---ASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQV 329
Query: 477 YGLTETCAGSTFSEWDDPS---VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG 533
           +G+ E      ++  DDP    V   G P+   Y +   WD+  +    KP   G ++  
Sbjct: 330 FGMAEGLV--NYTRLDDPEEIIVNTQGKPM-SPYDESRVWDD--HDRDVKPGETGHLLTR 384
Query: 534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593
           G     GY+      +  +  D     ++ TGDI ++  DG + +  R KD +  + GE 
Sbjct: 385 GPYTIRGYYKAEEHNAASFTED----GFYRTGDIVRLTRDGYIVVEGRAKDQIN-RGGEK 439
Query: 594 ISLGKIPSTTTVLP 607
           ++  ++ +     P
Sbjct: 440 VAAEEVENHLLAHP 453

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 470 GAPIGQAYGLTETCAGSTFSEW-----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP 524
            A I  AYG TE     +  E      D+ +   +G P P     ++  DE G + S   
Sbjct: 290 SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYII--DEDGKELSSGE 347
Query: 525 MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCL 576
             +GEI+V G  V+ GY NNP KT+E +    +G   ++TGDIG +  D  L
Sbjct: 348 --QGEIIVTGPAVSKGYLNNPEKTAEAF-FTFKGQPAYHTGDIGSLTEDNIL 396

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 447 IRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
           +++ +  G PL+ +   RF+    G  + + +G TET        W +P  G +G P P 
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPG 401
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFN-----VTAGYFNNPGKTSEVYKVDERGMC 560
             I+L+  D    +  ++    GEIV+         +   Y  +P +T E +        
Sbjct: 402 YKIELMDRDGRLCEVGEE----GEIVINTMEGKPVGLFVHYGKDPERTEETWH-----DG 452
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           +++TGD+  +  DG L  + R  DI+K
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIK 479

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 448 RFMICGGAPLSADSQRFINICMGAPIG--QAYGLTETCAGSTFSEWDDP--SVGRVGPPV 503
           R+ I GGAP+    +  I I     I   Q Y LTE+C G T    +D     G  G   
Sbjct: 273 RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRAT 329
Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFY 563
               +  V  D+G  +   +    GE+V+    +   Y+N P  T + +   + G  WF 
Sbjct: 330 MFTDVA-VRGDDGVIREHGE----GEVVIKSDILLKEYWNRPEATRDAF---DNG--WFR 379
Query: 564 TGDIGQVYPDGCLEIID 580
           TGDIG++  +G L I D
Sbjct: 380 TGDIGEIDDEGYLYIKD 396

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 103/493 (20%), Positives = 169/493 (34%), Gaps = 97/493 (19%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           G+  W +Y E+  RA   A+G    G     R  +      E+F      FR     V  
Sbjct: 47  GNTHW-SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105
Query: 186 YSSLGEDALIHSLNETQVTTLICDXXXX-----XXXXXXXXXXXTIKNVIYFENDGSEKD 240
             S     + +     +    I                      T+KN+I          
Sbjct: 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII---------- 155
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN- 299
             V+G         F  +E L       P + S + VA +  + GSTGL K +  TH + 
Sbjct: 156 --VAG-----EAEEFLPLEDLHTEPVKLPEVKSSD-VAFLQLSGGSTGLSKLIPRTHDDY 207
Query: 300 IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM--LCAGCAIGYGSTLTMTDTS 357
           I +   +++    +   S VYLA LP AH   L++  ++  L AG  +    + +  D  
Sbjct: 208 IYSLKRSVEVCWLD--HSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAF 265
Query: 358 SKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVE 417
             I++         K T+ A VP                                LA V 
Sbjct: 266 PLIERE--------KVTITALVPP-------------------------------LAXV- 285
Query: 418 GSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAY 477
             W  A    R    ++             + +  GGA  SA++ R +    G  + Q +
Sbjct: 286 --WXDAASSRRDDLSSL-------------QVLQVGGAKFSAEAARRVKAVFGCTLQQVF 330
Query: 478 GLTETCAGSTFSEWDDPS---VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG 534
           G  E      ++  DDP    V   G P    Y +   WD+  +    KP   G ++  G
Sbjct: 331 GXAEGLV--NYTRLDDPEEIIVNTQGKPX-SPYDESRVWDD--HDRDVKPGETGHLLTRG 385
Query: 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
                GY+      +  +  D     ++ TGDI ++  DG + +  R KD +  + GE +
Sbjct: 386 PYTIRGYYKAEEHNAASFTED----GFYRTGDIVRLTRDGYIVVEGRAKDQIN-RGGEKV 440
Query: 595 SLGKIPSTTTVLP 607
           +  ++ +     P
Sbjct: 441 AAEEVENHLLAHP 453

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT--LIPNPGRSDVYLAYLPLAH 328
           P  N +A + YTSGST  P+GV+ITH  + A   AI    +   PG  D  +++LP  H
Sbjct: 172 PVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPG--DRCVSWLPFYH 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	649
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-68
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-67
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-66
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-65
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-63
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	3e-60
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	7e-58
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-57
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	5e-56
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-54
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-54
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	9e-53
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-52
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-28
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-26
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	7e-28
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-26
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-24
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	9e-13
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-24
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	8e-24
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	5e-12
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	3e-23
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	8e-15
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-22
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	5e-12
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	3e-20
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-19
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-17
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-16
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	7e-16
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	4e-13
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	3e-06
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	1e-11
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	5e-11
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	5e-07
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-10
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	1e-07

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  232 bits (593), Expect = 2e-68
 Identities = 106/490 (21%), Positives = 170/490 (34%), Gaps = 101/490 (20%)

Query: 111 FVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170
           F  A                 TY E F+ +   A  +  +G N + R  + +E  +++F+
Sbjct: 42  FTDAHIEVNI-----------TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFM 90

Query: 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI 230
              G     + V        E  L++S+N +Q T +    K L+K+  V   L  I+ +I
Sbjct: 91  PVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKII 150

Query: 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
             ++          G  S +T  +        +   V  S      +A+IM +SGSTGLP
Sbjct: 151 IMDSKT-----DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLP 205

Query: 291 KGVMITHGNIVATAAAIKTLIPNPGRS--DVYLAYLPLAHVLELAAESIMLCAGCAIGYG 348
           KGV + H       +  +  I           L+ +P  H         M      +  G
Sbjct: 206 KGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFG------MFTTLGYLICG 259

Query: 349 STL------TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR-VREGVVKKVEEKGGLT 401
             +              ++          K      VP +F    +  ++ K        
Sbjct: 260 FRVVLMYRFEEELFLRSLQD--------YKIQSALLVPTLFSFFAKSTLIDK-------- 303

Query: 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD- 460
                                        +D     ++  +          GGAPLS + 
Sbjct: 304 -----------------------------YD---LSNLHEI--------ASGGAPLSKEV 323

Query: 461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKT 520
            +          I Q YGLTET +    +   D   G VG  VP    K+V  D G    
Sbjct: 324 GEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTG---- 379

Query: 521 SDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLE 577
             K +    RGE+ V G  + +GY NNP  T+ +  +D+ G  W ++GDI     D    
Sbjct: 380 --KTLGVNQRGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIAYWDEDEHFF 433

Query: 578 IIDRKKDIVK 587
           I+DR K ++K
Sbjct: 434 IVDRLKSLIK 443

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  229 bits (587), Expect = 1e-67
 Identities = 113/490 (23%), Positives = 173/490 (35%), Gaps = 101/490 (20%)

Query: 111 FVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170
           F  A  G  +           +Y E  +++C     L N+G  VD R A+ +E C E+FI
Sbjct: 44  FTNAVTGVDY-----------SYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFI 92

Query: 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI 230
                    + V           L+HSL  ++ T +    K L K+  V  ++ TIK ++
Sbjct: 93  PVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIV 152

Query: 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
             ++          G     T    +        S     +  +  VA+IM +SGSTGLP
Sbjct: 153 ILDSK-----VDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLP 207

Query: 291 KGVMITHGNIVATAAAIKTLIP--NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG 348
           KGV +TH NIV   +  +  I           L  +P  H         M      +  G
Sbjct: 208 KGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFG------MFTTLGYLICG 261

Query: 349 STL------TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR-VREGVVKKVEEKGGLT 401
             +              ++          K T +  VP +F    +  ++ K        
Sbjct: 262 FRVVMLTKFDEETFLKTLQD--------YKCTSVILVPTLFAILNKSELLNK-------- 305

Query: 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD- 460
                                        +D     ++  +          GGAPLS + 
Sbjct: 306 -----------------------------YD---LSNLVEI--------ASGGAPLSKEV 325

Query: 461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKT 520
            +          + Q YGLTET +    +   D   G  G  VP    K++  D      
Sbjct: 326 GEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTK---- 381

Query: 521 SDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLE 577
             K +    RGE+ V G  +  GY NNP  T E+  +DE G  W +TGDIG    +    
Sbjct: 382 --KSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIGYYDEEKHFF 435

Query: 578 IIDRKKDIVK 587
           I+DR K ++K
Sbjct: 436 IVDRLKSLIK 445

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  225 bits (577), Expect = 1e-66
 Identities = 99/470 (21%), Positives = 172/470 (36%), Gaps = 94/470 (20%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
           +     +  +Y E+  RA   A+ LV  G  V  R A   E  VE  + +    R     
Sbjct: 21  IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80

Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
           + + ++     L + + + +   ++CD  +   ++A+++ +      +  +  GS  D+ 
Sbjct: 81  LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAA 140

Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
                +  T+           R   D         A I+YTSG+TG  KG M++H N+ +
Sbjct: 141 AGASEAFATID----------RGADDL--------AAILYTSGTTGRSKGAMLSHDNLAS 182

Query: 303 TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT---DTSSK 359
            +  +          DV +  LP+ H   L      + +   +    ++      D    
Sbjct: 183 NSLTLVDYW-RFTPDDVLIHALPIYHTHGL-----FVASNVTLFARGSMIFLPKFDPDKI 236

Query: 360 IKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGS 419
           +         + + T++  VP  + R                           L      
Sbjct: 237 LD-------LMARATVLMGVPTFYTR---------------------------LLQSPR- 261

Query: 420 WFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479
                                      +R  I G APL AD+ R  +   G  + + YG+
Sbjct: 262 -----------LTKETTGH--------MRLFISGSAPLLADTHREWSAKTGHAVLERYGM 302

Query: 480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFN 536
           TET   ++     D   G VGP +P    ++   + G      K +PR   G I V G N
Sbjct: 303 TETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETG------KELPRGDIGMIEVKGPN 356

Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
           V  GY+  P KT   ++ D  G  +F TGD+G++   G + I+ R KD+V
Sbjct: 357 VFKGYWRMPEKTKSEFRDD--G--FFITGDLGKIDERGYVHILGRGKDLV 402

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  224 bits (573), Expect = 1e-65
 Identities = 94/518 (18%), Positives = 177/518 (34%), Gaps = 107/518 (20%)

Query: 83  TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
           ++A   + + +   +   +    +  +    +                  + E+ +    
Sbjct: 20  SLADRIDAAAEKFGEKTAI----ISAEPKFPSEFPESM-----------NFLEICEVTKK 64

Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
            ASG+   G        +     +++ +     +R + T V I        L H LN+++
Sbjct: 65  LASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSE 124

Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
            TTL+  S   +    V      ++ V     +                V+S SEV   G
Sbjct: 125 ATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----------------VNSLSEVMDSG 167

Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA 322
                +  +  +  VA+I YT G+TG+PKGVM+TH N+ A A  +          D  + 
Sbjct: 168 SEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIVG 226

Query: 323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMT--DTSSKIKKGTKGDVSVLKPTLMAAVP 380
            +P+ H  E    ++M+  G        + M   +     +     ++   K T   AVP
Sbjct: 227 CMPMFHSAEFGLVNLMVTVGNEY-----VVMGMFNQEMLAE-----NIEKYKGTFSWAVP 276

Query: 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR 440
              +               L   L +       + +                        
Sbjct: 277 PALN--------------VLVNTLESSNKTYDWSYL------------------------ 298

Query: 441 AVLGGRIRFMICGGAPLSAD-SQRF------INICMGAPIGQAYGLTETCAGSTFSEWDD 493
                  +    G  P++    ++                 Q +G+TE C   T +    
Sbjct: 299 -------KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351

Query: 494 PS-VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTS 549
                  G P+    +K++S ++G      + +     GEIV+ G N+  GY+    +  
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDG------RELGVGESGEIVIRGPNIFKGYWKREKENQ 405

Query: 550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           E +  DE+G  +F TGD+G +  +G L   DR K+++K
Sbjct: 406 ECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIK 443

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  218 bits (557), Expect = 2e-63
 Identities = 102/474 (21%), Positives = 164/474 (34%), Gaps = 104/474 (21%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY +V   A   ASGL   G        +   +  E+ +AF G   +   +         
Sbjct: 51  TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
             L      ++   LI  +   +K+   +     +K +          DS   G      
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESD-VKVMCV--------DSAPDG------ 155

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
              FSE+ +  +       + S + V  + Y+SG+TGLPKGVM+TH  ++ + A      
Sbjct: 156 CLHFSELTQADENEAPQVDI-SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD 214

Query: 312 P---NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTL------TMTDTSSKIKK 362
                    DV L  LP+ H+      ++     C +  G+ +       +      I+K
Sbjct: 215 NPNLYFHSEDVILCVLPMFHIY-----ALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEK 269

Query: 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG 422
                    K ++   VP +                 + K+            ++     
Sbjct: 270 --------YKVSIAPVVPPVMM--------------SIAKS----------PDLDK---- 293

Query: 423 AWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTE 481
                    D     S+R +          GGAPL  +           A +GQ YG+TE
Sbjct: 294 --------HD---LSSLRMI--------KSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334

Query: 482 TCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVG 533
                        E  D   G  G  V    +K+V  + G        +P    GEI + 
Sbjct: 335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETG------ASLPRNQPGEICIR 388

Query: 534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           G  +  GY N+P  TS     +  G  W +TGDIG +  D  L I+DR K+++K
Sbjct: 389 GDQIMKGYLNDPEATSRTIDKE--G--WLHTGDIGYIDDDDELFIVDRLKELIK 438

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  216 bits (552), Expect = 3e-60
 Identities = 102/476 (21%), Positives = 168/476 (35%), Gaps = 100/476 (21%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY +V   +   A+     G N +    +L   C E+ ++F     +  T          
Sbjct: 90  TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
             +      +    +I +++ + K+  + +    +   I    D +E      G      
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCI----DDNESVPIPEG------ 199

Query: 252 VSSFSEVEKLGKRSPVDPSLP--SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309
              F+E+ +    +         S + V  + Y+SG+TGLPKGVM+TH  +V + A    
Sbjct: 200 CLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 259

Query: 310 LIP---NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTL------TMTDTSSKI 360
                      DV L  LP+ H+      ++     C +  G+ +       +      I
Sbjct: 260 GENPNLYFHSDDVILCVLPMFHIY-----ALNSIMLCGLRVGAAILIMPKFEINLLLELI 314

Query: 361 KKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSW 420
           ++         K T+   VP I       V+        + K+          +  E   
Sbjct: 315 QR--------CKVTVAPMVPPI-------VL-------AIAKS----------SETEK-- 340

Query: 421 FGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGL 479
                     +D     S+R V          G APL  +           A +GQ YG+
Sbjct: 341 ----------YD---LSSIRVV--------KSGAAPLGKELEDAVNAKFPNAKLGQGYGM 379

Query: 480 TETCAGSTFSEWDDPS-----VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIV 531
           TE       S            G  G  V    +K+V  D G        +     GEI 
Sbjct: 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTG------DSLSRNQPGEIC 433

Query: 532 VGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           + G  +  GY NNP  T+E   +D+ G  W +TGDIG +  D  L I+DR K+++K
Sbjct: 434 IRGHQIMKGYLNNPAATAET--IDKDG--WLHTGDIGLIDDDDELFIVDRLKELIK 485

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  202 bits (517), Expect = 7e-58
 Identities = 100/472 (21%), Positives = 159/472 (33%), Gaps = 106/472 (22%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
            D    TY ++   A   A  L   G     R A+L    VE+   F G  +     V I
Sbjct: 40  TDVRM-TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
            + L    +   L+++    +I  +     + A+ +       V  +    S        
Sbjct: 99  NTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLA------ 152

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNG-VAVIMYTSGSTGLPKGVMITHGNIVATA 304
                        E+L   +  +P++         IMYTSG+TG PKGV+ TH ++ + A
Sbjct: 153 -------------ERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAA 199

Query: 305 AAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM------TDTSS 358
           ++  + I +    D  L  LP+ HV  L           +   G TL        T   S
Sbjct: 200 SSWASTI-DVRYRDRLLLPLPMFHVAALT------TVIFSAMRGVTLISMPQFDATKVWS 252

Query: 359 KIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEG 418
            I +         +  +  AVPAI                              +  V  
Sbjct: 253 LIVEE--------RVCIGGAVPAIL---------------------------NFMRQVPE 277

Query: 419 SWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478
                       +  +             R+ I GGAP+     +         + Q Y 
Sbjct: 278 ------------FAELDAPDF--------RYFITGGAPMPEALIKIYAA-KNIEVVQGYA 316

Query: 479 LTETCAGSTFSEWDDPS--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR--GEIVVGG 534
           LTE+C G T    +D     G  G       + +    + G            GE+V+  
Sbjct: 317 LTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR--GDDG-----VIREHGEGEVVIKS 369

Query: 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
             +   Y+N P  T + +  +  G  WF TGDIG++  +G L I DR KD++
Sbjct: 370 DILLKEYWNRPEATRDAF-DN--G--WFRTGDIGEIDDEGYLYIKDRLKDMI 416

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  201 bits (514), Expect = 1e-57
 Identities = 94/472 (19%), Positives = 158/472 (33%), Gaps = 110/472 (23%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
           L  G+    TY E+   A + A  +         R A+ A   +E  +A        +  
Sbjct: 42  LRFGERSL-TYAELAAAAGATAGRIGG-AG----RVAVWATPAMETGVAVVAALLAGVAA 95

Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
           V +    G+  L H L+++  + ++                               +   
Sbjct: 96  VPLNPKSGDKELAHILSDSAPSLVLAP--------------------------PDAELPP 129

Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
             G +    V   +       R  V          A+++YTSG+TG PKG +I    +  
Sbjct: 130 ALGALERVDVDVRA-------RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALAT 182

Query: 303 TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT------DT 356
           T  A+          DV +  LPL HV       ++L     +  G ++           
Sbjct: 183 TLDALADAWQ-WTGEDVLVQGLPLFHVH-----GLVLGILGPLRRGGSVRHLGRFSTEGA 236

Query: 357 SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAV 416
           + ++  G          T++  VP ++ R+                             +
Sbjct: 237 ARELNDG---------ATMLFGVPTMYHRI--------------------------AETL 261

Query: 417 EGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476
                 A  L                     R ++ G A L       I    G  + + 
Sbjct: 262 PADPELAKALAGA------------------RLLVSGSAALPVHDHERIAAATGRRVIER 303

Query: 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFN 536
           YG+TET   ++     +P  G VG P+P   ++LV  ++G    +      GEI V G N
Sbjct: 304 YGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPN 362

Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRK-KDIVK 587
           +   Y N P  T+  +  D  G  +F TGD+    PDG + I+ RK  D++K
Sbjct: 363 LFTEYLNRPDATAAAFTED--G--FFRTGDMAVRDPDGYVRIVGRKATDLIK 410

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  198 bits (505), Expect = 5e-56
 Identities = 85/531 (16%), Positives = 162/531 (30%), Gaps = 137/531 (25%)

Query: 78  WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
           W     +  +     +SHP                 A        +  G+ +  +Y E+ 
Sbjct: 27  WIDQ-PLTRILTVGVQSHP-HS-------------LA--------IICGERQL-SYIELD 62

Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
             + + A+ L   G      A +      E++I F    +  + V+    S  +  L   
Sbjct: 63  RLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAF 122

Query: 198 LNETQVTTLIC-----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV 252
           + + Q   LI           + + ++     + + ++   +  ++              
Sbjct: 123 IKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATD-------------- 168

Query: 253 SSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP 312
               +  +    + VD S    + VA    + GSTG PK +  TH +   +  A   +  
Sbjct: 169 FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC- 227

Query: 313 NPGRSDVYLAYLPLAHVLELAAESIMLCAG--CAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
               +   L  LP  H         +   G    +  G  + M              ++ 
Sbjct: 228 GLNSNTRLLCALPAPHNFM------LSSPGALGVLHAGGCVVMAPNPEP--------LNC 273

Query: 371 L------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
                  +  + + VP+                                          W
Sbjct: 274 FSIIQRHQVNMASLVPSAVI--------------------------------------MW 295

Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484
            LE+        +S        ++ +  GGA       R +   +   + Q +G+ E   
Sbjct: 296 -LEKAAQYKDQIQS--------LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGL- 345

Query: 485 GSTFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGF 535
              ++  DD       + GR         IK+V  DE       + +P    G +   G 
Sbjct: 346 -VNYTRLDDSDEQIFTTQGRPISSD--DEIKIV--DEQY-----REVPEGEIGMLATRGP 395

Query: 536 NVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
               GY+ +P   S+V   DE    ++Y+GD+ Q  PDG L ++ R KD +
Sbjct: 396 YTFCGYYQSPEHNSQV--FDEDN--YYYSGDLVQRTPDGNLRVVGRIKDQI 442

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  193 bits (493), Expect = 2e-54
 Identities = 95/530 (17%), Positives = 161/530 (30%), Gaps = 139/530 (26%)

Query: 78  WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
           W G  T   L       +  DR              A        +  G+  W +Y E+ 
Sbjct: 22  WAGE-TFGDLLRDRAAKYG-DR-------------IA--------ITCGNTHW-SYRELD 57

Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
            RA   A+G    G     R  +      E+F      FR     V    S     + + 
Sbjct: 58  TRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYF 117

Query: 198 LNETQVTTLIC-----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV 252
               +    I                V S L T+KN+I                      
Sbjct: 118 CEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE--------------F 163

Query: 253 SSFSEVEKLGKRSP-VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
               ++     + P V  S      VA +  + GSTGL K +  TH + + +      + 
Sbjct: 164 LPLEDLHTEPVKLPEVKSS-----DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC 218

Query: 312 PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL 371
                S VYLA LP+AH   L++  ++      +  G  + ++ + S             
Sbjct: 219 -WLDHSTVYLAALPMAHNYPLSSPGVL----GVLYAGGRVVLSPSPSP--------DDAF 265

Query: 372 ------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
                 K T+ A VP +                                         W 
Sbjct: 266 PLIEREKVTITALVPPLAM--------------------------------------VW- 286

Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
           ++          S        ++ +  GGA  SA++ R +    G  + Q +G+ E    
Sbjct: 287 MDAASSRRDDLSS--------LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGL-- 336

Query: 486 STFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFN 536
             ++  DDP      + G+  P  P    ++   D+       + +     G ++  G  
Sbjct: 337 VNYTRLDDPEEIIVNTQGK--PMSPYDESRVW--DDHD-----RDVKPGETGHLLTRGPY 387

Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
              GY+      +      E G  ++ TGDI ++  DG + +  R KD +
Sbjct: 388 TIRGYYKAEEHNAAS--FTEDG--FYRTGDIVRLTRDGYIVVEGRAKDQI 433

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  192 bits (490), Expect = 3e-54
 Identities = 77/476 (16%), Positives = 139/476 (29%), Gaps = 122/476 (25%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ E+  R  + A+ L   G     R A++A    +  IA     R       +   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
             L   +   ++T  +    +  +++       +   +I+  +   + +    G      
Sbjct: 91  AELAELIKRGEMTAAVIAVGR--QVADAIFQSGSGARIIFLGDLVRDGEPYSYG------ 142

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
                         P++         A I YTSG+TGLPK  +I      +    + T +
Sbjct: 143 -------------PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV 189

Query: 312 P-NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
               GR +V L  +PL H             G      + L +                V
Sbjct: 190 GLRHGRHNVVLGLMPLYH-----------VVGFFAVLVAALAL------------DGTYV 226

Query: 371 L----------------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414
           +                + T + A P                                  
Sbjct: 227 VVEEFRPVDALQLVQQEQVTSLFATPTHL------------------------------- 255

Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474
                          L  A         L   +R +   GA +       ++  +     
Sbjct: 256 -------------DALAAAAAHAGSSLKLD-SLRHVTFAGATMPDAVLETVHQHLPGEKV 301

Query: 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIV 531
             YG TE        +    +      P     +++V    GG    D+ +     GE++
Sbjct: 302 NIYGTTEAMNSLYMRQPKTGTEMA---PGFFSEVRIV--RIGG--GVDEIVANGEEGELI 354

Query: 532 V-GGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
           V    +   GY N P  T+E   + + G  W+ T D+    P+G + I+ R  D++
Sbjct: 355 VAASDSAFVGYLNQPQATAEK--LQD-G--WYRTSDVAVWTPEGTVRILGRVDDMI 405

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  190 bits (486), Expect = 9e-53
 Identities = 80/484 (16%), Positives = 144/484 (29%), Gaps = 110/484 (22%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
           +  G+ +  +Y E+   A + A  L   G      A +      E +I F    +  +  
Sbjct: 44  VIDGERQL-SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAP 102

Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFENDGS 237
           V    S     L    ++ +   LI D +         L+   +   +I+ V    + G 
Sbjct: 103 VLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE 162

Query: 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH 297
                           +  +              P+ + VA    + G+TG PK +  TH
Sbjct: 163 H---------------NLQDAINHPAEDFTATPSPA-DEVAYFQLSGGTTGTPKLIPRTH 206

Query: 298 GNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG--CAIGYGSTLTMTD 355
            +   +      +     +   YL  +P AH         M   G       G T+ +  
Sbjct: 207 NDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYA------MSSPGSLGVFLAGGTVVLAA 259

Query: 356 TSSKIKKGTKGDVSVL------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGY 409
             S                   +  + A VP                             
Sbjct: 260 DPSA--------TLCFPLIEKHQVNVTALVPPAV-------------------------- 285

Query: 410 KRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469
                           L  +                  + +  GGA LSA     I   +
Sbjct: 286 -SLWLQALIEGESRAQLASL------------------KLLQVGGARLSATLAARIPAEI 326

Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPV-PCCYIKLVSWDEGGYKTSDKPM 525
           G  + Q +G+ E     T    DD +   +   G P+ P   + +   D  G      P+
Sbjct: 327 GCQLQQVFGMAEGLVNYTRL--DDSAEKIIHTQGYPMCPDDEVWVA--DAEG-----NPL 377

Query: 526 PR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRK 582
           P+   G ++  G     GY+ +P   +     D  G  ++ +GD+  + P+G + +  R+
Sbjct: 378 PQGEVGRLMTRGPYTFRGYYKSPQHNASA--FDANG--FYCSGDLISIDPEGYITVQGRE 433

Query: 583 KDIV 586
           KD +
Sbjct: 434 KDQI 437

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  188 bits (479), Expect = 2e-52
 Identities = 87/471 (18%), Positives = 147/471 (31%), Gaps = 85/471 (18%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
                    TYGE+ +RA  FAS L   G + + R  ++    V   +AF G     +  
Sbjct: 42  YIDDTGST-TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVP 100

Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
           V   + L     ++ L  +    +I     ++ ++    S +     +            
Sbjct: 101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLI----------- 149

Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
           VS    +    +    E +   +P   +     + +A  +Y+SGSTG PKG + TH N+ 
Sbjct: 150 VSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLY 209

Query: 302 ATAAAIKTLIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAIGYGSTLTMTDTSSK 359
            TA      I     +DV  +   L     L       +     AI      T     ++
Sbjct: 210 WTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR 269

Query: 360 IKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGS 419
           + +         +PT+   VP ++                             +      
Sbjct: 270 LVE--------HRPTVFYGVPTLY---------------------------ANMLVSPN- 293

Query: 420 WFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479
                        A    ++R             G  L  +         G  I    G 
Sbjct: 294 -----------LPARADVAIRIC--------TSAGEALPREIGERFTAHFGCEILDGIGS 334

Query: 480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFN 536
           TE       +       G  G PVP   I+L   DE G       +P    G++ + G +
Sbjct: 335 TEMLHIFLSNRAGAVEYGTTGRPVPGYEIELR--DEAG-----HAVPDGEVGDLYIKGPS 387

Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
               Y+NN  K+   +  +     W  +GD     P+GC     R  D++K
Sbjct: 388 AAVMYWNNREKSRATFLGE-----WIRSGDKYCRLPNGCYVYAGRSDDMLK 433

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  118 bits (298), Expect = 2e-28
 Identities = 51/273 (18%), Positives = 98/273 (35%), Gaps = 36/273 (13%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGL-VNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT 181
           +  G   + TY  ++  A   A  L          R  +  +  ++  I    C+  +I 
Sbjct: 20  ITDGQESY-TYQNLYCEASLLAKRLKAYQQ---S-RVGLYIDNSIQSIILIHACWLANIE 74

Query: 182 VVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241
           +  I + L  + + + +    V  + C      +   + S             +G   ++
Sbjct: 75  IAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNT 134

Query: 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG--VAVIMYTSGSTGLPKGVMITHGN 299
                 ++           + K SP +    S N   +A IM+TSG+TG  K V  T  N
Sbjct: 135 MGIQYDTSNE-------TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRN 187

Query: 300 IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM------ 353
             A+A   K  +    R   +L+ LP+ H+   +  S++L    A+  G T+ +      
Sbjct: 188 HYASAIGCKESL-GFDRDTNWLSVLPIYHI---SGLSVLL---RAVIEGFTVRIVDKFNA 240

Query: 354 TDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386
               + IK          + T ++ VP   + +
Sbjct: 241 EQILTMIKNE--------RITHISLVPQTLNWL 265

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  112 bits (283), Expect = 2e-26
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 20/144 (13%)

Query: 446 RIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS--VGRVGPP 502
            ++ ++ GGA LSA   +  +      PI  ++G+TETC+    +  +        VG P
Sbjct: 275 NLQKILLGGAKLSATMIETALQ--YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMP 332

Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562
                +K+ +               GE+++ G NV  GY       +  ++ +  G  +F
Sbjct: 333 SANVDVKIKN-PNKE--------GHGELMIKGANVMNGYLYPT-DLTGTFE-N--G--YF 377

Query: 563 YTGDIGQVYPDGCLEIIDRKKDIV 586
            TGDI ++  +G + I DR+KD++
Sbjct: 378 NTGDIAEIDHEGYVMIYDRRKDLI 401

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  116 bits (294), Expect = 7e-28
 Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 18/223 (8%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
             +      T+ +   RA   ASGL+  G +   R AIL++ C E              +
Sbjct: 25  FMVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83

Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
           + +   L  D +   L +   + ++  +     ++ V  SL  +K      +        
Sbjct: 84  LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG----- 138

Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
                       F+  + L   +P            VI++T+   G P+G +I+ GN++ 
Sbjct: 139 -----------PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLI 187

Query: 303 TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAI 345
             +++         +DV L  LPL HV  L     +  AG A 
Sbjct: 188 AQSSLVDAWR-LTEADVNLGMLPLFHVTGLGLMLTLQQAGGAS 229

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  113 bits (284), Expect = 1e-26
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 20/147 (13%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
            +R +     P +   +RF   C  A     +G +ET   STF+ + D      G P+  
Sbjct: 273 SLRAVTGLDTPETI--ERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFW 329

Query: 506 CYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562
             + +V  D        +P+P    GEIV+ G  V  GY+NN   T   ++ +  G  W 
Sbjct: 330 RTVAVV--DAED-----RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-N--G--WH 377

Query: 563 YTGDIGQVYPDGCLEIIDR--KKDIVK 587
           +TGD+G+   DG L    R  +K+++K
Sbjct: 378 HTGDMGRFDADGYLFYAGRAPEKELIK 404

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  106 bits (268), Expect = 2e-24
 Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 31/167 (18%)

Query: 446 RIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFS----EWDDPSV---- 496
            +R ++ GG+        RF    MG  + Q YGLTET      +      +  S     
Sbjct: 294 TLRRLVVGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKL 351

Query: 497 ---GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-----GEIVVGGFNVTAGYFNNPGKT 548
               + G P+P   +++   DE G     +P+P+     GE+ + G  +T GY+ N   T
Sbjct: 352 TLKAKTGLPIPLVRLRVA--DEEG-----RPVPKDGKALGEVQLKGPWITGGYYGNEEAT 404

Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595
                 D  G  +F TGDI     +G +EI DR KD++K   GE+IS
Sbjct: 405 RSALTPD--G--FFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWIS 446

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 70.2 bits (173), Expect = 9e-13
 Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 17/205 (8%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           G+    TY EV+ RA     GL   G  V  R A L         A+         + T 
Sbjct: 43  GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
              L    + + LN  +   L+ D   L  + A+   LKT+++ +  +    E       
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE------- 155

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-GNIVATA 304
                   ++   E+          +P +     + YT+G+TGLPKGV+ +H   ++ + 
Sbjct: 156 -----GYLAY---EEALGEEADPVRVP-ERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 206

Query: 305 AAIKTLIPNPGRSDVYLAYLPLAHV 329
           AA           DV L  +P+ HV
Sbjct: 207 AASLVDGTALSEKDVVLPVVPMFHV 231

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  106 bits (268), Expect = 2e-24
 Identities = 74/479 (15%), Positives = 152/479 (31%), Gaps = 116/479 (24%)

Query: 132 TYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
            + E+ + +   A+ L    G     R A++     EW++   GC R  +  +     + 
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134

Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
              +++ L  ++   ++   + ++++  V+S   +++  +       +       G  N+
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCD-------GWLNF 187

Query: 251 T--VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
              ++  S      +    +         + I +TSG++GLPK    ++           
Sbjct: 188 KKLLNEASTTHHCVETGSQEA--------SAIYFTSGTSGLPKMAEHSYS---------- 229

Query: 309 TLIPNPGRSDVYLAYLPLA-HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKG-TKG 366
                            +      L A  IM              ++DT      G    
Sbjct: 230 ----------SLGLKAKMDAGWTGLQASDIMWT------------ISDT------GWILN 261

Query: 367 DVSVLKPTLMAAVPAIFDRVRE---GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG- 422
            +  L              + +    V+ K      +                  S  G 
Sbjct: 262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK-----------------SMMGA 304

Query: 423 --AWGLERML----WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476
              +   RML      +  F  ++  +          G  L  ++        G  I ++
Sbjct: 305 PIVY---RMLLQQDLSSYKFPHLQNCVT--------VGESLLPETLENWRAQTGLDIRES 353

Query: 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVG 533
           YG TET      S+      G +G    C  ++++  D+ G       +P    G+I + 
Sbjct: 354 YGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQII--DDKG-----NVLPPGTEGDIGIR 406

Query: 534 G-----FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
                   + +GY +NP KT+   + D     ++  GD G    DG  + + R  DI+ 
Sbjct: 407 VKPIRPIGIFSGYVDNPDKTAANIRGD-----FWLLGDRGIKDEDGYFQFMGRADDIIN 460

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  104 bits (261), Expect = 8e-24
 Identities = 40/277 (14%), Positives = 81/277 (29%), Gaps = 45/277 (16%)

Query: 61  PGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKF 120
             +   +     +         ++ A      +  P D            F+        
Sbjct: 3   SSHHHHHHSSGLVPRGSHMSVRSLPAALRACARLQPHDPAFT--------FMDYEQDWD- 53

Query: 121 EKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSI 180
                G     T+ +++ R  + A  L   G   D R  I A   +E+ +AF G  +   
Sbjct: 54  -----GVAITLTWSQLYRRTLNVAQELSRCGSTGD-RVVISAPQGLEYVVAFLGALQAGR 107

Query: 181 TVVTIY---SSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237
             V +      + ++     L+++    ++  S  +  +    +           E D  
Sbjct: 108 IAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL 167

Query: 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH 297
           + D+                       +            A + YTSGST  P GV+++H
Sbjct: 168 DLDAP----------------------NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSH 205

Query: 298 GNIVATAAAIK-----TLIPNPGRSDVYLAYLPLAHV 329
            N+      +           P  +   +++LP  H 
Sbjct: 206 QNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD 242

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 40/176 (22%), Positives = 54/176 (30%), Gaps = 45/176 (25%)

Query: 445 GRIRFMICGGAPLSADS-QRFINICMGAPIG-------QAYGLTETCAGSTFSEWDDP-- 494
           G I  ++ G   + A + +RF +    A           +Y L E       S+   P  
Sbjct: 311 GNILTILSGSERVQAATIKRFAD--RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPE 368

Query: 495 ---------SVGRVGPPVPCCYIKLVSWDEGGYKTSD----------KPMPR---GEIVV 532
                    S G   P        L+S        S              P    GEI V
Sbjct: 369 TVDFDTESLSAGHAKPCAGGGATSLIS---YMLPRSPIVRIVDSDTCIECPDGTVGEIWV 425

Query: 533 GGFNVTAGYFNNPGKTSEVYKVDERGMC-------WFYTGDIGQVYPDGCLEIIDR 581
            G NV  GY+  P ++   +               W  TGD G V  DG + II R
Sbjct: 426 HGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  100 bits (252), Expect = 2e-22
 Identities = 42/205 (20%), Positives = 71/205 (34%), Gaps = 25/205 (12%)

Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
           E  TY ++   A + A+ L   G     R  +L    +    AF GC       V IY  
Sbjct: 39  ETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPP 98

Query: 189 LGEDA---LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
             E         +  ++   ++  +  +KK +                      +   + 
Sbjct: 99  AQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT--------------------ADELNTNP 138

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
                   +   +E     S    S    N +A + YTSGST  PKGVM++H N++    
Sbjct: 139 KFLKIPAIALESIELNRSSSWQPTS-IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLN 197

Query: 306 AIKTLIPNPGRSDVYLAYLPLAHVL 330
            I T   +     +  ++LP  H +
Sbjct: 198 KIFTSF-HMNDETIIFSWLPPHHDM 221

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 39/184 (21%), Positives = 54/184 (29%), Gaps = 53/184 (28%)

Query: 445 GRIRFMICGGAPLSADS-QRFINICMGAPIG-------QAYGLTETCAGSTFSEWDDPSV 496
                   G  P+  ++ + F         G         YGL E     T         
Sbjct: 289 SSWVTAFNGAEPVREETMEHFYQAF--KEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYK 346

Query: 497 -----------GRVGPPVPCC--YIKLVSWDEGGYKTSDKPMPR---------------- 527
                       RV           KLVS        S  P+                  
Sbjct: 347 TLTLAKEQFQDHRVHFADDNSPGSYKLVS--------SGNPIQEVKIIDPDTLIPCDFDQ 398

Query: 528 -GEIVVGGFNVTAGYFNNPGKTSEVY----KVDERGMCWFYTGDIGQVYPDGCLEIIDRK 582
            GEI V   +V  GY+N P +T   +    K DER   +  TGD+G    +  L +  R 
Sbjct: 399 VGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLHENELYVTGRI 457

Query: 583 KDIV 586
           KD++
Sbjct: 458 KDLI 461

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 95.0 bits (237), Expect = 3e-20
 Identities = 74/357 (20%), Positives = 113/357 (31%), Gaps = 107/357 (29%)

Query: 259 EKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317
           +   +    DP+     N  A IMYTSG+TG PKG + TH NI      +  +  +    
Sbjct: 590 QTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQ-- 647

Query: 318 DVYLAYLPLA---HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL--- 371
           D +L+    A      +  A         ++   + L +        + T  D   L   
Sbjct: 648 DTFLSVSNYAFDAFTFDFYA---------SMLNAARLII------ADEHTLLDTERLTDL 692

Query: 372 ----KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
                  +M A  A+F                             L      W       
Sbjct: 693 ILQENVNVMFATTALF---------------------------NLLTDAGEDWMKG---- 721

Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGS 486
                              +R ++ GG   S    ++ + I     +   YG TE    +
Sbjct: 722 -------------------LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA 762

Query: 487 TFSEWDDPSVGR----VGPPVP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNV 537
           T     D         +G P+     YI L   +E       +  P    GE+ + G  V
Sbjct: 763 TAHVVHDLPDSISSLPIGKPISNASVYI-L---NEQS-----QLQPFGAVGELCISGMGV 813

Query: 538 TAGYFNNPGKTSEV-----YKVDERGMCWFY-TGDIGQVYPDGCLEIIDRKKDIVKL 588
           + GY N    T E      +K  E  +   Y TGD+ +  PDG +E   R  D VK+
Sbjct: 814 SKGYVNRADLTKEKFIENPFKPGET-L---YRTGDLARWLPDGTIEYAGRIDDQVKI 866

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 90.3 bits (225), Expect = 4e-19
 Identities = 74/351 (21%), Positives = 110/351 (31%), Gaps = 113/351 (32%)

Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYLAYLPL---AHVLELAAE 335
           I++TSG+TG PKGV I+H N+++    +      +  +    LA  P      V+  A  
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAP- 208

Query: 336 SIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPTLMAAVPAIFDRVRE 388
                    +  G TL        + K    D   L          +  + P+  D    
Sbjct: 209 --------TLALGGTLFA------LPKELVADFKQLFTTIAQLPVGIWTSTPSFAD---- 250

Query: 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR 448
                                     A+    F    +           ++         
Sbjct: 251 -------------------------MAMLSDDFCQAKM----------PALTHF------ 269

Query: 449 FMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTF---SEWDDPSVGRV--GPP 502
                G  L+  + ++       A I  AYG TE     +    +     +  R+  G P
Sbjct: 270 --YFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYP 327

Query: 503 VP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSE------- 550
            P    YI +   DE G     K +     GEI+V G  V+ GY NNP KT+E       
Sbjct: 328 KPDSPTYI-I---DEDG-----KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKG 378

Query: 551 --VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
              Y           TGDIG +  D  L    R    +K   G  I L  +
Sbjct: 379 QPAYH----------TGDIGSLTEDNILLYGGRLDFQIKY-AGYRIELEDV 418

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 85.2 bits (212), Expect = 1e-17
 Identities = 68/345 (19%), Positives = 104/345 (30%), Gaps = 104/345 (30%)

Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL---AHVLELAAES 336
           I+YTSGSTG PKGV IT+  +V+                V+L   P      V+++    
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN-LQTGQVFLNQAPFSFDLSVMDIYP-- 205

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPTLMAAVPAIFDRVREG 389
                  ++  G TL        I K        L          +  + P+        
Sbjct: 206 -------SLVTGGTLWA------IDKDMIARPKDLFASLEQSDIQVWTSTPSFA------ 246

Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
                         +                     L    +   +  +++         
Sbjct: 247 -------------EMC--------------------LMEASFSESMLPNMKTF------- 266

Query: 450 MICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP-----PV 503
            +  G  L  +  ++ I     A I   YG TE     T     +  + +          
Sbjct: 267 -LFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCK 325

Query: 504 P--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSE--VYKVDE 556
                 I +    E G        P    GEIV+ G +V+ GY  +P  T +       E
Sbjct: 326 SDCRLLI-M---KEDG-----TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGE 376

Query: 557 RGMCWFY-TGDIGQVY-PDGCLEIIDRKKDIVKLQHGEYISLGKI 599
           R     Y TGD G  Y  +G L    R    +KL HG  + L +I
Sbjct: 377 R-A---YKTGDAG--YVENGLLFYNGRLDFQIKL-HGYRMELEEI 414

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 82.2 bits (204), Expect = 1e-16
 Identities = 73/366 (19%), Positives = 110/366 (30%), Gaps = 117/366 (31%)

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
              D  +        I+YTSGSTG PKGV I+  N+ +    I    P      ++L   
Sbjct: 134 VSQDQWVKEHE-TFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFP-VSGGKIFLNQA 191

Query: 325 PLA---HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPT 374
           P +    V++L            +  G TL        + K       VL          
Sbjct: 192 PFSFDLSVMDLYP---------CLQSGGTLHC------VTKDAVNKPKVLFEELKKSGLN 236

Query: 375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI 434
           +  + P+                      +                     L    +   
Sbjct: 237 VWTSTPSFV-------------------QMC--------------------LMDPGFSQD 257

Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
           +               +  G  L     +  +     A I   YG TE     T  E  +
Sbjct: 258 LLPHADTF--------MFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITN 309

Query: 494 PSVGR-----VGPPVP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFN 543
             + R     VG   P    +I +   DE G     +P+P    GEIV+ G +V+ GY  
Sbjct: 310 DVISRSESLPVGFAKPDMNIFI-M---DEEG-----QPLPEGEKGEIVIAGPSVSRGYLG 360

Query: 544 NPGKTSE---------VYKVDERGMCWFYTGDIGQVY-PDGCLEIIDRKKDIVKLQHGEY 593
            P  T +          Y+          TGD G  +  DG +    R    +KL HG  
Sbjct: 361 EPELTEKAFFSHEGQWAYR----------TGDAG--FIQDGQIFCQGRLDFQIKL-HGYR 407

Query: 594 ISLGKI 599
           + L +I
Sbjct: 408 MELEEI 413

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 80.2 bits (199), Expect = 7e-16
 Identities = 71/372 (19%), Positives = 116/372 (31%), Gaps = 136/372 (36%)

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
           + +     S + +A ++YTSG+TG PKG M+ H  I       +  +      D    + 
Sbjct: 173 TNLHVPSKSTD-LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN-VTEKDRIGQFA 230

Query: 325 PL---AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPT 374
            +   A V E+           A+  G++L +      I K T  D           + T
Sbjct: 231 SISFDASVWEMFM---------ALLTGASLYI------ILKDTINDFVKFEQYINQKEIT 275

Query: 375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI 434
           ++   P                                                 L D  
Sbjct: 276 VITLPPTYV--------------------------------------------VHL-DPE 290

Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADSQ-------RFINICMGAPIGQAYGLTETCAGST 487
              S++ +        I  G+  S            +IN         AYG TET   +T
Sbjct: 291 RILSIQTL--------ITAGSATSPSLVNKWKEKVTYIN---------AYGPTETTICAT 333

Query: 488 FSEWDDPSVGRV---GPPVP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTA 539
                  ++G     G P+     YI +   DE       +       GE+ +GG  +  
Sbjct: 334 TWVATKETIGHSVPIGAPIQNTQIYI-V---DENL-----QLKSVGEAGELCIGGEGLAR 384

Query: 540 GYFNNPGKTSE------------VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
           GY+  P  TS+            +YK          TGD  +   DG +E + R  + VK
Sbjct: 385 GYWKRPELTSQKFVDNPFVPGEKLYK----------TGDQARWLSDGNIEYLGRIDNQVK 434

Query: 588 LQHGEYISLGKI 599
           +  G  + L ++
Sbjct: 435 I-RGHRVELEEV 445

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 71.1 bits (175), Expect = 4e-13
 Identities = 21/198 (10%), Positives = 56/198 (28%), Gaps = 21/198 (10%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ ++   +   A+  V  G        +  ++  +++    G  +     V     L  
Sbjct: 88  TFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147

Query: 192 DALIHSLNETQVTTLICDS--KQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISN 249
             +++ + +  +  ++C +     +++    +    I                + G I  
Sbjct: 148 RDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV-----LEGWIDF 202

Query: 250 WTV-----SSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA 304
                     F            D          ++ ++SG+ G PK V   +   +   
Sbjct: 203 RKELEESSPIFERPTGEVSTKNEDI--------CLVYFSSGTAGFPKMVEHDNTYPLGHI 254

Query: 305 AAIKTLIPNPGRSDVYLA 322
              K    N     ++  
Sbjct: 255 LTAKYWQ-NVEDDGLHYT 271

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 20/150 (13%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
            +++ +  G PL+ +         G  + + +G TET        W +P  G +G P P 
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPG 401

Query: 506 CYIKLVSWDEGGYKTSDKPMPR---GEIVVGG-----FNVTAGYFNNPGKTSEVYKVDER 557
             I+L+  D  G     +       GEIV+         +   Y  +P +T E +     
Sbjct: 402 YKIELM--DRDG-----RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG-- 452

Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
              +++TGD+  +  DG L  + R  DI+K
Sbjct: 453 ---YYHTGDMAWMDEDGYLWFVGRADDIIK 479

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 65.5 bits (159), Expect = 1e-11
 Identities = 42/275 (15%), Positives = 76/275 (27%), Gaps = 52/275 (18%)

Query: 269 PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG--RSDVYLAYLPL 326
           P     +    +  + G+TG PK V+     I A  +   +   +     S   LA +P 
Sbjct: 85  PQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPT 144

Query: 327 -AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385
             H++    +   L  G  + +   +        + +G    V      L+  V      
Sbjct: 145 GPHIVGAINKERALRLG-GMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMN 203

Query: 386 VREGVVKKVEEKGGLTKNLFNI-GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLG 444
                           + L       R L             +R      + +S+  +  
Sbjct: 204 QD-------------IRFLVTTPPVLRELL------------KRPEVVLQMKQSLAQI-- 236

Query: 445 GRIRFMICGGAPLSADSQRFI--NICMGAPIGQAYGLTETC--AGSTFSEWDDPSVGRVG 500
                   GG  L+ D  +FI   I        +YG T     + S     +   V    
Sbjct: 237 ------TLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVI-YD 289

Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVV 532
              P     +V           + +    RG ++V
Sbjct: 290 SFSPFITYDVVDSITA------QTVEYGERGNVIV 318

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 64.6 bits (158), Expect = 5e-11
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP-------GRS 317
           S +  + P     A ++YTSGSTG PKGV ++  N+ + + A   LI N        G  
Sbjct: 166 SDILNNYPENL-DAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGV 224

Query: 318 DVYLAYLPL---AHVLEL 332
             +L         H+ E+
Sbjct: 225 GKFLCLASRAFDVHIGEM 242

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 21/149 (14%)

Query: 448 RFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRV--GPPVP- 504
            ++  GG  ++  +Q+  +      +   YG TE   G +       S      G P+  
Sbjct: 297 VYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDS-DTRCIGHPLGD 355

Query: 505 -CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
              ++ L     G    S++ + +   GE+V+ G  V  GY N P           + M 
Sbjct: 356 SVAHV-L---APG----SNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRK-M- 405

Query: 561 WFY-TGDIGQVYPDGCLEIIDRKKDIVKL 588
             Y TGDI ++  D  +  + RK + VK+
Sbjct: 406 --YRTGDIVRMDADSSILFLGRKDEQVKV 432

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 62.5 bits (153), Expect = 2e-10
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
           S   P   +   +A I ++SG+TG PK +  TH  I         L         +L   
Sbjct: 155 SVARPCFAADQ-IAYINFSSGTTGRPKAIACTHAGITRLCLGQSFL--AFAPQMRFLVNS 211

Query: 325 PLA 327
           PL+
Sbjct: 212 PLS 214

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 40/170 (23%), Positives = 59/170 (34%), Gaps = 32/170 (18%)

Query: 448 RFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSE--WDDPSVGRV--GPP 502
           R ++ GG  LS    +R +       +   YG TE    +       DD     +  G  
Sbjct: 279 RQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKA 338

Query: 503 VP--CCYIKLVSWDEGGYKTSDKPMPR----GEIVVGGFNVTAGYFNNPGKTSEVYKVD- 555
           +      + L   DE G     + +      GEIV  G  +  GY N+  +T   +    
Sbjct: 339 IAGTAVLL-L---DEHG-----QEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELP 389

Query: 556 -----ERGMCWFY-TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
                 R     Y TGD  +    G L  I R    VKL +G  + L  +
Sbjct: 390 YRGRLLR-A---YRTGDRARYDEQGRLRFIGRGDGQVKL-NGYRLDLPAL 434

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	649
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.96
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.54
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.53
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.46
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	98.29
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	98.11
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	92.39
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	92.37
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.66
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	81.32
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	80.46
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	80.3

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=8.2e-73  Score=628.17  Aligned_cols=458  Identities=21%  Similarity=0.290  Sum_probs=368.7

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|+++++++|+++|+++.+           +. +   ..+..+++||+||.++++++|++|+++|+++||+|+|
T Consensus        18 ~~~l~~~l~~~a~~~p~~~A~~~~~-----------~~-~---~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   82 (549)
T 3g7s_A           18 KISLADRIDAAAEKFGEKTAIISAE-----------PK-F---PSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGV   82 (549)
T ss_dssp             CCCTTHHHHHHHHHHTTSEEEEEES-----------SC-C---CCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHhCCCceEEEeCC-----------Cc-c---cccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            4799999999999999999999752           11 0   0122357999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++....+.+.......+ ++.++..+..     
T Consensus        83 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----  156 (549)
T 3g7s_A           83 CIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE-----  156 (549)
T ss_dssp             ECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS-----
T ss_pred             ECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC-----
Confidence            9999999999999999999999999999999999999999999999999998888777665544 4555554321     


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  320 (649)
                                 ..+++++...............++|+|+|+|||||||.||||++||+++++.+......+ ++.++|++
T Consensus       157 -----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~  224 (549)
T 3g7s_A          157 -----------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTI  224 (549)
T ss_dssp             -----------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEE
T ss_pred             -----------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEE
Confidence                       234566655444332222222348999999999999999999999999999999988888 89999999


Q ss_pred             EEccChHHHHHHHHHHHHHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354          321 LAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (649)
Q Consensus       321 l~~~pl~h~~~~~~~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~  397 (649)
                      ++++|++|++++...+.++..|+++++   +++..+.+.           ++++++|+++++|+++..+.+.......  
T Consensus       225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~--  291 (549)
T 3g7s_A          225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAEN-----------IEKYKGTFSWAVPPALNVLVNTLESSNK--  291 (549)
T ss_dssp             ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHSCC--
T ss_pred             EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHH-----------HHHhCCeEEEeCCHHHHHHHhhhhhhcc--
Confidence            999999999998888889999999998   445555555           9999999999999999999875332110  


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh----cC---
Q 006354          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC----MG---  470 (649)
Q Consensus       398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~----~~---  470 (649)
                                                                 ....++||.+++||+++++++.+.+.+.    ++   
T Consensus       292 -------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~  328 (549)
T 3g7s_A          292 -------------------------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPR  328 (549)
T ss_dssp             -------------------------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTT
T ss_pred             -------------------------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCcc
Confidence                                                       0012489999999999999999988887    55   


Q ss_pred             CccccccCcccccccccccCCCC-CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccch
Q 006354          471 APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS  549 (649)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~  549 (649)
                      +++++.||+||++.+++...... ...+++|+|+++++++|+|++++..   +++|+.|||+|+|++++.|||++|+.|+
T Consensus       329 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~  405 (549)
T 3g7s_A          329 LRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRE---LGVGESGEIVIRGPNIFKGYWKREKENQ  405 (549)
T ss_dssp             CEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCE---ECTTCCEEEEEESTTSCSEETTCTTGGG
T ss_pred             ccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcC---CCCCCceEEEEECcchhhhhCCChhhhh
Confidence            88999999999998877655433 4568999999999999999777665   6899999999999999999999999999


Q ss_pred             hhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354          550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       550 ~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                      ++|..+.+|.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.+
T Consensus       406 ~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~Vv~~~~~~~g~~~~a  483 (549)
T 3g7s_A          406 ECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVM-DVAVIGKPDEEAGEVPKA  483 (549)
T ss_dssp             TSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEE-EEEEECCCC------CEE
T ss_pred             hhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCee-eEEEEeeEccccCceEEE
Confidence            999755564459999999999999999999999999998 599999999999999999999 999999998887766555


Q ss_pred             hhh
Q 006354          630 FQS  632 (649)
Q Consensus       630 ~~~  632 (649)
                      +..
T Consensus       484 ~vv  486 (549)
T 3g7s_A          484 FIV  486 (549)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=8.4e-73  Score=628.24  Aligned_cols=458  Identities=23%  Similarity=0.288  Sum_probs=336.4

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|.++++++|+++|++...          ++.        ..+.+||+||.++++++|++|+++|+++||+|+|
T Consensus        19 ~~tl~~~l~~~a~~~p~~~a~~a~~----------~~~--------~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   80 (550)
T 3rix_A           19 DGTAGEQLHKAMKRYALVPGTIAFT----------DAH--------IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV   80 (550)
T ss_dssp             CSCHHHHHHHHHHHHHTSTTCEEEE----------ETT--------TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             cCCHHHHHHHHHHhCCCCceEEEee----------ecC--------CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            3799999999999999999986321          111        1137999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+..+....+.++.++.++...... 
T Consensus        81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (550)
T 3rix_A           81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ-  159 (550)
T ss_dssp             ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBT-
T ss_pred             EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCcccc-
Confidence            9999999999999999999999999999999999999999999999999999988888877888888888766543211 


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCC------CCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC--C
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSP------VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--P  312 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~--~  312 (649)
                                ...++.++........      .+.....++|+|+|+|||||||.||||++||+++++.+......+  .
T Consensus       160 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~  229 (550)
T 3rix_A          160 ----------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN  229 (550)
T ss_dssp             ----------TBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSC
T ss_pred             ----------CcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccc
Confidence                      2345555554332211      111223468899999999999999999999999998887776552  2


Q ss_pred             CCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       313 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                      .+.++|++++++|++|++++...+.++..|+++++.   ++..+.+.           ++++++|+++++|+++..+.+.
T Consensus       230 ~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~  298 (550)
T 3rix_A          230 QIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFSFFAKS  298 (550)
T ss_dssp             CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEEECHHHHHHHHHC
T ss_pred             cCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhC
Confidence            678899999999999999998888899999999994   44444444           9999999999999999988763


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      ...                                               .....++||.+++||+++++++.+.+.+.+
T Consensus       299 ~~~-----------------------------------------------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~  331 (550)
T 3rix_A          299 TLI-----------------------------------------------DKYDLSNLHEIASGGAPLSKEVGEAVAKRF  331 (550)
T ss_dssp             CGG-----------------------------------------------GGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred             ccc-----------------------------------------------cccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence            110                                               011125899999999999999999999988


Q ss_pred             CCc-cccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccc
Q 006354          470 GAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT  548 (649)
Q Consensus       470 ~~~-l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t  548 (649)
                      +.. +++.||+||+++.++.........+++|+|+|+++++|+|++++..   +++|+.|||+|+|++++.|||++|+.|
T Consensus       332 ~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t  408 (550)
T 3rix_A          332 HLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKT---LGVNQRGELCVRGPMIMSGYVNNPEAT  408 (550)
T ss_dssp             TCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCSEETTCHHHH
T ss_pred             CCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcC---CCCCCCeEEEEeCCCcchhhcCChhhh
Confidence            875 8999999999988887777777789999999999999999766654   789999999999999999999999999


Q ss_pred             hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354          549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~  628 (649)
                      ++.|.  .+  |||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.
T Consensus       409 ~~~~~--~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~~g~~~~  482 (550)
T 3rix_A          409 NALID--KD--GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIF-DAGVAGLPDDDAGELPA  482 (550)
T ss_dssp             HHHBC--TT--SCEEEEEEEEECTTCCEEEC-------------------------------------------------
T ss_pred             hhhcC--CC--CCeecCcEEEEeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcc-eEEEEEeecCCCCceEE
Confidence            99996  56  89999999999999999999999999998 599999999999999999999 99999999999888777


Q ss_pred             hhhhhh
Q 006354          629 IFQSCV  634 (649)
Q Consensus       629 ~~~~~~  634 (649)
                      ++....
T Consensus       483 a~vv~~  488 (550)
T 3rix_A          483 AVVVLE  488 (550)
T ss_dssp             ------
T ss_pred             EEEEec
Confidence            766554

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=2.6e-72  Score=622.40  Aligned_cols=451  Identities=22%  Similarity=0.277  Sum_probs=375.4

Q ss_pred             CCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCC
Q 006354           77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT  156 (649)
Q Consensus        77 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd  156 (649)
                      +.+...|++++|+++++++|+++|+++.+          +|+           .+||+||.++++++|++|+++|+++||
T Consensus        17 ~~p~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd   75 (536)
T 3ni2_A           17 YIPKNLPLHSYVLENLSNHSSKPCLINGA----------NGD-----------VYTYADVELTARRVASGLNKIGIQQGD   75 (536)
T ss_dssp             CCCSSCCHHHHHTTTGGGSTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCcHHHHHHHHhhcCCCceEEEECC----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            34555799999999999999999998631          233           799999999999999999999999999


Q ss_pred             EEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCC
Q 006354          157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG  236 (649)
Q Consensus       157 ~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~  236 (649)
                      +|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+....... .+ .++.++...
T Consensus        76 ~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~  153 (536)
T 3ni2_A           76 VIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DV-KVMCVDSAP  153 (536)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TC-EEEESSCCC
T ss_pred             EEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cc-eEEEecCCC
Confidence            9999999999999999999999999999999999999999999999999999998887776654332 22 344433211


Q ss_pred             CCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC---CC
Q 006354          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI---PN  313 (649)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~---~~  313 (649)
                                   -....++++...... ..+.....++|+|+|+|||||||.||||++||+++++.+.......   ..
T Consensus       154 -------------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~  219 (536)
T 3ni2_A          154 -------------DGCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLY  219 (536)
T ss_dssp             -------------TTCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSC
T ss_pred             -------------CCccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcccccc
Confidence                         123455665543322 2233456789999999999999999999999999999887765422   16


Q ss_pred             CCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       314 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                      +.++|++++.+|++|++++.. ++.++..|+++++.+   +..+.+.           ++++++|++.++|+++..+.+.
T Consensus       220 ~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~  288 (536)
T 3ni2_A          220 FHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGL-----------IEKYKVSIAPVVPPVMMSIAKS  288 (536)
T ss_dssp             CCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHTC
T ss_pred             CCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH-----------HHHhCCeEEEccHHHHHHHHhC
Confidence            788999999999999999865 678899999999944   3344444           9999999999999999988653


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      ...                                               .....++||.+++||+++++++.+.+++.+
T Consensus       289 ~~~-----------------------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~  321 (536)
T 3ni2_A          289 PDL-----------------------------------------------DKHDLSSLRMIKSGGAPLGKELEDTVRAKF  321 (536)
T ss_dssp             SCG-----------------------------------------------GGSCCTTCCEEEEESSCCCHHHHHHHHHHC
T ss_pred             ccc-----------------------------------------------ccCCCccceEEEECCCCCCHHHHHHHHHHC
Confidence            110                                               011225899999999999999999999888


Q ss_pred             -CCccccccCcccccccccccC-----CCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccC
Q 006354          470 -GAPIGQAYGLTETCAGSTFSE-----WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN  543 (649)
Q Consensus       470 -~~~l~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~  543 (649)
                       +++++|.||+||++.+++...     ......+++|+|++|++++|+|++++..   +++|+.|||+|+|++++.|||+
T Consensus       322 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~  398 (536)
T 3ni2_A          322 PQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGAS---LPRNQPGEICIRGDQIMKGYLN  398 (536)
T ss_dssp             TTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCB---CCTTCCEEEEEESTTSCSEETT
T ss_pred             CCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcC---CCCCCccEEEEeCcccchhhcC
Confidence             899999999999987665432     2234568999999999999999766654   7899999999999999999999


Q ss_pred             CCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCc
Q 006354          544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKL  623 (649)
Q Consensus       544 ~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~  623 (649)
                      +|+.|++.|.  .+  |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..
T Consensus       399 ~p~~t~~~~~--~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~Vv~~~~~~~  472 (536)
T 3ni2_A          399 DPEATSRTID--KE--GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEIS-DAAVVGLKDEDA  472 (536)
T ss_dssp             CHHHHHHHBC--TT--SCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEE-EEEEEEEEETTT
T ss_pred             ChhHHHhhcc--CC--CceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEeeecCCC
Confidence            9999999996  56  89999999999999999999999999998 599999999999999999999 999999888777


Q ss_pred             ccchhhhh
Q 006354          624 ASSTKIFQ  631 (649)
Q Consensus       624 ~~~~~~~~  631 (649)
                      ++.+.++.
T Consensus       473 g~~~~a~v  480 (536)
T 3ni2_A          473 GEVPVAFV  480 (536)
T ss_dssp             EEEEEEEE
T ss_pred             CceeEEEE
Confidence            65544443

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1e-71  Score=621.73  Aligned_cols=456  Identities=16%  Similarity=0.181  Sum_probs=379.5

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      .+.++++|+++|+++|+++|+++.+           +.       +..+.+||+||.++++++|++|+++|+++||+|+|
T Consensus        55 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------~~-------g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l  116 (580)
T 3etc_A           55 FNFAYDVVDVYARDSPEKLAMIWCD-----------DY-------GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVML  116 (580)
T ss_dssp             CCHHHHTHHHHHHHCTTCEEEEEEE-----------SS-------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             chHHHHHHHHHHhhCCCCEEEEEEc-----------CC-------CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3556699999999999999999753           11       23357999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH--HHHHHhhccCCCc-cEEEEecCCCC
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL--KKLSAVSSSLKTI-KNVIYFENDGS  237 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~l~~~~~~~~~~-~~ii~~~~~~~  237 (649)
                      +++|++++++++|||+++|+++||++|.++++++.+++++++++++|++.+..  +.+..+....+.+ ..++.++....
T Consensus       117 ~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (580)
T 3etc_A          117 TLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL  196 (580)
T ss_dssp             ECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC
T ss_pred             EcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc
Confidence            99999999999999999999999999999999999999999999999987654  5666655555554 45555543211


Q ss_pred             CccCCCCCCCCCceEeehHHHHhcCCCCCCCC---CCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC
Q 006354          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (649)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~  314 (649)
                                  ..+.++.+...........+   ....++|+|+|+|||||||.||||+++|.++++.+......+ .+
T Consensus       197 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~  263 (580)
T 3etc_A          197 ------------EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NV  263 (580)
T ss_dssp             ------------TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CC
T ss_pred             ------------cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CC
Confidence                        12356666655443322222   256789999999999999999999999999988887766666 88


Q ss_pred             CCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHH
Q 006354          315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK  393 (649)
Q Consensus       315 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  393 (649)
                      .+++++++.+|++|..+++. ++.++..|+++++.++..+ +     +..++..++++++|+++++|++++.+.+...  
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--  335 (580)
T 3etc_A          264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRF-E-----AKNMLEKASKYGVTTFCAPPTIYRFLIKEDL--  335 (580)
T ss_dssp             CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSC-C-----HHHHHHHHHHHTCCEEEECHHHHHHHHTSCC--
T ss_pred             CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCC-C-----HHHHHHHHHHHCCeEEEccHHHHHHHHhccc--
Confidence            99999999999999988876 6778999999988432211 0     1122333999999999999999998865210  


Q ss_pred             HHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcc
Q 006354          394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI  473 (649)
Q Consensus       394 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l  473 (649)
                                                                    .....++||.+++||+++++++.+.|.+.+|+++
T Consensus       336 ----------------------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i  369 (580)
T 3etc_A          336 ----------------------------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKL  369 (580)
T ss_dssp             -------------------------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCC
T ss_pred             ----------------------------------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeE
Confidence                                                          1112258999999999999999999999899999


Q ss_pred             ccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcc-----ccccccccCCCccc
Q 006354          474 GQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG-----FNVTAGYFNNPGKT  548 (649)
Q Consensus       474 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g-----~~v~~gY~~~~~~t  548 (649)
                      ++.||+||++..++..+......+++|+|+||++++|+| +++..   +++|+.|||+|+|     ++++.||+++|+.|
T Consensus       370 ~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~g~~---~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t  445 (580)
T 3etc_A          370 MEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-RDGRL---CEVGEEGEIVINTMEGKPVGLFVHYGKDPERT  445 (580)
T ss_dssp             EEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTCCCTTCCCEETTCHHHH
T ss_pred             ecccccccccceeecCCCCCCCCCccccCCCCCEEEEEC-CCCCC---CCCCCceEEEEecCCCCCCeeeccccCCHhHH
Confidence            999999999888777666667789999999999999999 55543   7899999999997     78999999999999


Q ss_pred             hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354          549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~  628 (649)
                      ++.|   .+  |||+|||+|++|+||+|+|+||+||+||++ |++|+|.|||++|.+||+|. +|+|+|.+++..|+.+.
T Consensus       446 ~~~f---~~--gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~-G~~I~p~eIE~~l~~~p~V~-~a~Vvg~~~~~~g~~~~  518 (580)
T 3etc_A          446 EETW---HD--GYYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHPAVL-ECAITGVPDPVRGQVIK  518 (580)
T ss_dssp             HHHE---ET--TEEEEEEEEEECTTSCEEEEEESSSCEEET-TEEECHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEE
T ss_pred             Hhhc---CC--CEEecCcEEEECCCCcEEEEecCCCEEEEC-CEEECHHHHHHHHHhCCCee-eEEEEeeeccCCCcEEE
Confidence            9999   56  899999999999999999999999999986 99999999999999999999 99999999988876665


Q ss_pred             hhhh
Q 006354          629 IFQS  632 (649)
Q Consensus       629 ~~~~  632 (649)
                      ++..
T Consensus       519 a~vv  522 (580)
T 3etc_A          519 ATIV  522 (580)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=2.3e-71  Score=615.21  Aligned_cols=448  Identities=22%  Similarity=0.284  Sum_probs=364.0

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|+++++++|+++|+.+.+          +         +..+++||+||.++++++|++|+++|+++||+|+|
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   77 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT   77 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEec----------C---------CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3689999999999999999998531          1         12247999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|++++++++|||+++|+++||++|.++.+++.++|++++++++|++.+..+.+..+....+.++.++.++.....  
T Consensus        78 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  155 (541)
T 1v25_A           78 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE--  155 (541)
T ss_dssp             ECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT--
T ss_pred             EcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCc--
Confidence            999999999999999999999999999999999999999999999999999888877776666777777765543210  


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHH--HhhCCCCCCCc
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPGRSD  318 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d  318 (649)
                                ...+++++......    .....++++++|+|||||||.||||++||+++++.....  ...+ .++++|
T Consensus       156 ----------~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d  220 (541)
T 1v25_A          156 ----------GYLAYEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKD  220 (541)
T ss_dssp             ----------TCEEHHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTC
T ss_pred             ----------ccccHHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCC
Confidence                      12345555432211    134567899999999999999999999999998776653  2345 788999


Q ss_pred             EEEEccChHHHHHHHHHHHHHHhCceEEeCC----cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHH
Q 006354          319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGS----TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (649)
Q Consensus       319 ~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~----~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  394 (649)
                      ++++.+|++|++++...+.+++.|+++++.+    +..+.+.           ++++++|+++++|+++..+.+......
T Consensus       221 ~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~  289 (541)
T 1v25_A          221 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVEL-----------FDGEGVTFTAGVPTVWLALADYLESTG  289 (541)
T ss_dssp             EEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHHT
T ss_pred             EEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHH-----------HHhcCeeEEecchHHHHHHHhhhhccC
Confidence            9999999999999877788999999999843    3334444           999999999999999999887533210


Q ss_pred             HhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccc
Q 006354          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG  474 (649)
Q Consensus       395 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~  474 (649)
                                                                     ...++||.+++||+++++++.+.| +.+|++++
T Consensus       290 -----------------------------------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~  321 (541)
T 1v25_A          290 -----------------------------------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVR  321 (541)
T ss_dssp             -----------------------------------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEE
T ss_pred             -----------------------------------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCcee
Confidence                                                           112489999999999999999999 55799999


Q ss_pred             cccCcccccccccccCCCC-----------CCCCccCCCcccceEEEEecCCCCcccCCCC--CCccEEEEccccccccc
Q 006354          475 QAYGLTETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP--MPRGEIVVGGFNVTAGY  541 (649)
Q Consensus       475 ~~YG~TE~~~~~~~~~~~~-----------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~--g~~GEl~v~g~~v~~gY  541 (649)
                      +.||+||++.+++......           ...+++|+|+|+++++|+| +++..   ++.  ++.|||+|+|++++.||
T Consensus       322 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~---~~~~~~~~GEl~v~g~~v~~GY  397 (541)
T 1v25_A          322 QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP---VPKDGKALGEVQLKGPWITGGY  397 (541)
T ss_dssp             EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCB---CCSSSCCCEEEEEESTTSBSSC
T ss_pred             ecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCC---CCCCCCcceEEEEeCcchhccc
Confidence            9999999988776553321           1247899999999999999 55544   442  36899999999999999


Q ss_pred             cCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCC
Q 006354          542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPM  621 (649)
Q Consensus       542 ~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~  621 (649)
                      |++|+.|++.|.  .+  |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++
T Consensus       398 ~~~p~~t~~~f~--~~--g~~~TGDlg~~d~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~Vv~~~~~  471 (541)
T 1v25_A          398 YGNEEATRSALT--PD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVK-EAAVVAIPHP  471 (541)
T ss_dssp             BTCHHHHHTTBC--TT--SCEEEEEEEEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC-----------CEEEEECS
T ss_pred             cCChhhhhhhcc--CC--CCeEcCCEEEEcCCceEEEeecccceeee-CCEEECHHHHHHHHHhCCCce-EEEEEEecCC
Confidence            999999999996  56  89999999999999999999999999997 599999999999999999999 9999999998


Q ss_pred             Ccccchhhhhhh
Q 006354          622 KLASSTKIFQSC  633 (649)
Q Consensus       622 ~~~~~~~~~~~~  633 (649)
                      ..++.+.++...
T Consensus       472 ~~~~~~~a~vv~  483 (541)
T 1v25_A          472 KWQERPLAVVVP  483 (541)
T ss_dssp             SSSEEEEECC--
T ss_pred             CcCceEEEEEEE
Confidence            888776666544

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.6e-71  Score=616.84  Aligned_cols=451  Identities=19%  Similarity=0.232  Sum_probs=333.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 006354           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (649)
Q Consensus        79 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (649)
                      ....|+.++|+++++++|+++|+++            ++           +.+||+||.++++++|++|+++|+++||+|
T Consensus        27 ~~~~tl~~~l~~~a~~~p~~~Al~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V   83 (544)
T 3o83_A           27 WIDQPLTRILTVGVQSHPHSLAIIC------------GE-----------RQLSYIELDRLSTNLATRLAEKGLGKGDTA   83 (544)
T ss_dssp             CCCCCTTHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             CCCCCHHHHHHHHHHhCCCceEEEc------------CC-----------CceeHHHHHHHHHHHHHHHHHCCCCCCCEE
Confidence            3457999999999999999999986            33           379999999999999999999999999999


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH-----HHHHHhhccCCCccEEEEec
Q 006354          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFE  233 (649)
Q Consensus       159 ~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~ii~~~  233 (649)
                      +|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....     ..+..+....+....++..+
T Consensus        84 ~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (544)
T 3o83_A           84 LVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLN  163 (544)
T ss_dssp             EECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEET
T ss_pred             EEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEec
Confidence            9999999999999999999999999999999999999999999999999987653     33344444445556666554


Q ss_pred             CCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCC
Q 006354          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN  313 (649)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~  313 (649)
                      ....              ...+.++...............++|+|+|+|||||||.||||++||+++.+.+.+....+ +
T Consensus       164 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~  228 (544)
T 3o83_A          164 HQAT--------------DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-G  228 (544)
T ss_dssp             CCTT--------------SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-T
T ss_pred             CCcc--------------ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-C
Confidence            3211              123444444433333333556789999999999999999999999999999999999888 9


Q ss_pred             CCCCcEEEEccChHHHHHHHH--HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354          314 PGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (649)
Q Consensus       314 ~~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~  388 (649)
                      +.++|++++++|++|.+++..  ++.++..|+++++.+   +..+.+.           ++++++|+++++|+++..+.+
T Consensus       229 ~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~  297 (544)
T 3o83_A          229 LNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSI-----------IQRHQVNMASLVPSAVIMWLE  297 (544)
T ss_dssp             CCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHH
T ss_pred             CCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHHCCCEEEechHHHHHHHh
Confidence            999999999999999999874  778899999999943   3444444           999999999999999999877


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (649)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~  468 (649)
                      .......                                               ..++||.+++||+++++++.+.+.+.
T Consensus       298 ~~~~~~~-----------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~~  330 (544)
T 3o83_A          298 KAAQYKD-----------------------------------------------QIQSLKLLQVGGASFPESLARQVPEV  330 (544)
T ss_dssp             HHTTTHH-----------------------------------------------HHTTCCEEEEESSCCCHHHHTHHHHH
T ss_pred             chhhccc-----------------------------------------------cCCcceEEEEcCCCCCHHHHHHHHHH
Confidence            5321100                                               11489999999999999999999998


Q ss_pred             cCCccccccCcccccccccccCCCC-CCCCccCCCc-ccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCc
Q 006354          469 MGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG  546 (649)
Q Consensus       469 ~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~  546 (649)
                      +++++++.||+||++..++...... ...+++|+|+ ++++++|+| +++..   +++|+.|||+|+|++++.|||++|+
T Consensus       331 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~v~~GY~~~~~  406 (544)
T 3o83_A          331 LNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQYRE---VPEGEIGMLATRGPYTFCGYYQSPE  406 (544)
T ss_dssp             HCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTSCSCCTTCHH
T ss_pred             hCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEEC-CCCCC---CCCCCeeEEEEecCCcchhhcCChh
Confidence            9999999999999876554332221 2237899996 899999999 66554   7899999999999999999999999


Q ss_pred             cchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccc
Q 006354          547 KTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASS  626 (649)
Q Consensus       547 ~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~  626 (649)
                      .|++.|.  .+  |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++..++..|+.
T Consensus       407 ~t~~~f~--~~--g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~~g~~  480 (544)
T 3o83_A          407 HNSQVFD--ED--NYYYSGDLVQRTPDGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVM-HAALVAIVDEQFGEK  480 (544)
T ss_dssp             HHHHHBC--TT--CCEEEEEEEEECTTSCEEEEEEEC-------------------------------------------
T ss_pred             hhhhhCC--CC--CCeEcCCEEEEcCCCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCcc-EEEEEeccCCCCCce
Confidence            9999996  56  89999999999999999999999999997 599999999999999999999 999999999998888


Q ss_pred             hhhhhhhhh
Q 006354          627 TKIFQSCVT  635 (649)
Q Consensus       627 ~~~~~~~~~  635 (649)
                      +.++....+
T Consensus       481 ~~a~vv~~~  489 (544)
T 3o83_A          481 SCAFIVSRN  489 (544)
T ss_dssp             ---------
T ss_pred             EEEEEEeCC
Confidence            777766543

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=5.8e-71  Score=608.56  Aligned_cols=442  Identities=22%  Similarity=0.287  Sum_probs=368.2

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 006354           78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR  157 (649)
Q Consensus        78 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~  157 (649)
                      .+...|+.++|+++++++|+++|+++.+           .          ..++||+||.++++++|++|+++|+++||+
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~-----------~----------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~   70 (517)
T 3r44_A           12 DDKMKNIGWMLRQRATVSPRLQAYVEPS-----------T----------DVRMTYAQMNALANRCADVLTALGIAKGDR   70 (517)
T ss_dssp             CGGGGCHHHHHHHHHHHSTTSEEEEEGG-----------G----------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred             cccccCHHHHHHHHHHhCCCCeEEEeCC-----------c----------CceeeHHHHHHHHHHHHHHHHHcCCCCcCE
Confidence            3556899999999999999999998631           1          136999999999999999999999999999


Q ss_pred             EEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCC
Q 006354          158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS  237 (649)
Q Consensus       158 V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~  237 (649)
                      |+|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++....+.+..+....+....++.+.    
T Consensus        71 V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~----  146 (517)
T 3r44_A           71 VALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI----  146 (517)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE----
T ss_pred             EEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc----
Confidence            9999999999999999999999999999999999999999999999999999988887776654433222111110    


Q ss_pred             CccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCC
Q 006354          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS  317 (649)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  317 (649)
                                   ...++.+...... ...+.....++|+|+|+|||||||.||||++||+++++.+......+ ++.++
T Consensus       147 -------------~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~  211 (517)
T 3r44_A          147 -------------GADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYR  211 (517)
T ss_dssp             -------------EHHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTT
T ss_pred             -------------CcccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCC
Confidence                         0112333333222 22234556789999999999999999999999999999999999888 99999


Q ss_pred             cEEEEccChHHHHHHHHHHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHH
Q 006354          318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (649)
Q Consensus       318 d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  394 (649)
                      |++++.+|++|++++...+.+++.|+++++.   ++..+.+.           ++++++|++.++|++++.+.+....  
T Consensus       212 d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~--  278 (517)
T 3r44_A          212 DRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL-----------IVEERVCIGGAVPAILNFMRQVPEF--  278 (517)
T ss_dssp             CEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHSHHH--
T ss_pred             CEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHH-----------HHHhCCeEEEeHHHHHHHHHhCccc--
Confidence            9999999999999998866666699999984   34444444           9999999999999999988763221  


Q ss_pred             HhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccc
Q 006354          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG  474 (649)
Q Consensus       395 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~  474 (649)
                                                                   .....++||.+++||+++++++.+.+... +++++
T Consensus       279 ---------------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~  312 (517)
T 3r44_A          279 ---------------------------------------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVV  312 (517)
T ss_dssp             ---------------------------------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEE
T ss_pred             ---------------------------------------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEE
Confidence                                                         11223589999999999999999999887 99999


Q ss_pred             cccCcccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhh
Q 006354          475 QAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY  552 (649)
Q Consensus       475 ~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f  552 (649)
                      +.||+||+++.++.....  ....+++|+|+++++++|+| +++..   ++.| .|||+|+|++++.|||++|+.|++.|
T Consensus       313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f  387 (517)
T 3r44_A          313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVI---REHG-EGEVVIKSDILLKEYWNRPEATRDAF  387 (517)
T ss_dssp             EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCE---ESSE-EEEEEEEETTSCSEETTCHHHHHHTE
T ss_pred             EeecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCC---CCCC-CeEEEEeCcchhhhhCCChhhhHhhh
Confidence            999999998877655433  34568999999999999999 55543   4566 89999999999999999999999999


Q ss_pred             ccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhh
Q 006354          553 KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIF  630 (649)
Q Consensus       553 ~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~  630 (649)
                         .+  |||+|||+|++++||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.++
T Consensus       388 ---~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~~~Vv~~~~~~~g~~~~a~  458 (517)
T 3r44_A          388 ---DN--GWFRTGDIGEIDDEGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVS-EVAVIGLPDEKWGEIAAAI  458 (517)
T ss_dssp             ---ET--TEEEEEEEEEECTTSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEEEE
T ss_pred             ---cC--CCEecceeEEEcCCeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEe-EEEEEeccccccCceEEEE
Confidence               56  89999999999999999999999999998 599999999999999999999 9999999888776554443

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=3e-72  Score=680.20  Aligned_cols=495  Identities=18%  Similarity=0.235  Sum_probs=403.9

Q ss_pred             CcccccccccCCCccceehheeeecceeEeeehhccccccccccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHH
Q 006354            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (649)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (649)
                      .||+++|++..+..|..++..++..+    +++  |..+   +.++++++..+++.++...+   ....+.+. .+++++
T Consensus       403 ~y~~~lf~~~~i~~l~~~~~~lL~~l----~~~--p~~~---~~~~~~l~~~e~~~~~~~~~---~~~~~~~~-~~l~~~  469 (1304)
T 2vsq_A          403 AYNENVFDEAFILRLKSQLLTAIQQL----IQN--PDQP---VSTINLVDDREREFLLTGLN---PPAQAHET-KPLTYW  469 (1304)
T ss_dssp             EEETTTSCHHHHHHHHHHHHHHHHHH----HHS--TTSB---GGGCCCCCHHHHHHHHTTTS---CCCCCCCC-CCHHHH
T ss_pred             EECCccCCHHHHHHHHHHHHHHHHHh----ccC--cccc---ccccCCCCHHHHHHHHHhcC---CCCCCCCC-CCHHHH
Confidence            79999999999999999888888733    344  7777   88999999988887765544   22233333 799999


Q ss_pred             HHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH
Q 006354           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (649)
Q Consensus        88 ~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~  167 (649)
                      |+++++++||++|+++            +++           .+||+||.++++++|++|+++|+++|++|+|+++|+++
T Consensus       470 ~~~~~~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~  526 (1304)
T 2vsq_A          470 FKEAVNANPDAPALTY------------SGQ-----------TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLE  526 (1304)
T ss_dssp             HHHHHHHCTTSEEEES------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHH
T ss_pred             HHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHH
Confidence            9999999999999985            333           69999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCC
Q 006354          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (649)
Q Consensus       168 ~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~  247 (649)
                      +++++|||+++|+++||+||.+|.+++.++++++++++++++.+....+.    .++....++.+++..           
T Consensus       527 ~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~-----------  591 (1304)
T 2vsq_A          527 LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT-----------  591 (1304)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG-----------
T ss_pred             HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc-----------
Confidence            99999999999999999999999999999999999999999987543321    122222223222110           


Q ss_pred             CCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChH
Q 006354          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (649)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (649)
                               ..   ......+.....++++|||+|||||||.||||+++|+++.+. .+....+ .++++|++++++|++
T Consensus       592 ---------~~---~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~  657 (1304)
T 2vsq_A          592 ---------RF---EEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYA  657 (1304)
T ss_dssp             ---------GG---GSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTT
T ss_pred             ---------cc---ccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCcc
Confidence                     00   011111234557899999999999999999999999999876 3444455 788999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 006354          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (649)
Q Consensus       328 h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (649)
                      |+.+.+.++.+|+.|+++++.++....+.     ..+...++++++|+++++|++++.+.+.....              
T Consensus       658 fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~--------------  718 (1304)
T 2vsq_A          658 FDAFTFDFYASMLNAARLIIADEHTLLDT-----ERLTDLILQENVNVMFATTALFNLLTDAGEDW--------------  718 (1304)
T ss_dssp             STHHHHHHHHHHTTTCEEEECCGGGTTCH-----HHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH--------------
T ss_pred             HHHHHHHHHHHHHcCCEEEECChhhcCCH-----HHHHHHHHHcCCcEEEccHHHHHHHHhhchhc--------------
Confidence            99999889999999999999665443332     22333399999999999999999886531100              


Q ss_pred             HHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccCcccccccc
Q 006354          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGS  486 (649)
Q Consensus       408 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~  486 (649)
                              +                            ++||.+++|||++++++.+.|.+.+ +++++|.||+||+++++
T Consensus       719 --------~----------------------------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  762 (1304)
T 2vsq_A          719 --------M----------------------------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA  762 (1304)
T ss_dssp             --------H----------------------------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCS
T ss_pred             --------C----------------------------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHh
Confidence                    0                            2799999999999999988887776 47899999999999887


Q ss_pred             cccCCC----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC--Cccc
Q 006354          487 TFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMC  560 (649)
Q Consensus       487 ~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~~~~  560 (649)
                      +.....    .....++|+|++|++++|+| +++..   +++|+.|||||+|+++++||+|+|+.|+++|..++  +|.+
T Consensus       763 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~  838 (1304)
T 2vsq_A          763 TAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQL---QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGET  838 (1304)
T ss_dssp             EEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCB---CCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCE
T ss_pred             eeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCC---CCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCe
Confidence            765432    23457899999999999999 55543   78999999999999999999999999999997543  3558


Q ss_pred             ceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354          561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       561 w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~  628 (649)
                      ||||||+|++++||.|+|+||+||+||++ |+||+|+|||++|.+||+|. +|+|++..+...+..+.
T Consensus       839 ~yrTGDl~~~~~dG~l~~~GR~d~qvki~-G~rie~~eIE~~l~~~p~V~-~a~V~~~~~~~~~~~l~  904 (1304)
T 2vsq_A          839 LYRTGDLARWLPDGTIEYAGRIDDQVKIR-GHRIELEEIEKQLQEYPGVK-DAVVVADRHESGDASIN  904 (1304)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEGGGEEEET-TEEEEHHHHHHHHHHSSSCC-EEEEEEECCSSSCCEEE
T ss_pred             eEecCCeEEEcCCCeEEEEcCCCCEEEEC-CEeeCHHHHHHHHHhCCCCc-eEEEEEEecCCCCEEEE
Confidence            99999999999999999999999999995 99999999999999999999 99999988776554443

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=3e-71  Score=614.94  Aligned_cols=451  Identities=25%  Similarity=0.330  Sum_probs=374.3

Q ss_pred             CCCCCHHH-HHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 006354           79 KGASTMAA-LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR  157 (649)
Q Consensus        79 ~~~~tl~~-~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~  157 (649)
                      +...|+.+ +|.++++++ +++|+++..          ++           +.+||+||.++++++|++|+++|+++||+
T Consensus        22 p~~~~l~~~~l~~~~~~~-~~~A~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~   79 (548)
T 2d1s_A           22 EGSAGTQLRKYMERYAKL-GAIAFTNAV----------TG-----------VDYSYAEYLEKSCCLGKALQNYGLVVDGR   79 (548)
T ss_dssp             SSCHHHHHHHHHHHHHHH-TCEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHHTCCTTCE
T ss_pred             CCcCcHHHHHHHhhhccc-CCceEEEcC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence            33458999 899999999 999998521          22           36999999999999999999999999999


Q ss_pred             EEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCC
Q 006354          158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS  237 (649)
Q Consensus       158 V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~  237 (649)
                      |+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+..+....+....++.++....
T Consensus        80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (548)
T 2d1s_A           80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD  159 (548)
T ss_dssp             EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred             EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence            99999999999999999999999999999999999999999999999999999888777666555554556666543210


Q ss_pred             CccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCC------CCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhh-
Q 006354          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLP------SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL-  310 (649)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~-  310 (649)
                      .           ....+++++.........+....      .++|+|+|+|||||||.||||++||+++++.+...... 
T Consensus       160 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~  228 (548)
T 2d1s_A          160 Y-----------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI  228 (548)
T ss_dssp             B-----------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTT
T ss_pred             c-----------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchh
Confidence            0           01234666655432210111111      23899999999999999999999999999998887766 


Q ss_pred             --CCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHH
Q 006354          311 --IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD  384 (649)
Q Consensus       311 --~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~  384 (649)
                        + .++++|++++++|++|++++.. ++.++ .|+++++.+   +..+.+.           ++++++|+++++|++++
T Consensus       229 ~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~  295 (548)
T 2d1s_A          229 YGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT-----------LQDYKCTSVILVPTLFA  295 (548)
T ss_dssp             TSC-CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH-----------HHHTTEEEEEECHHHHH
T ss_pred             hcc-CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH-----------HHHcCCcEEEecHHHHH
Confidence              5 7888999999999999999877 45566 999999843   4444444           99999999999999999


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHH
Q 006354          385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF  464 (649)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~  464 (649)
                      .+.+....                                               .....++||.+++||+++++++.+.
T Consensus       296 ~l~~~~~~-----------------------------------------------~~~~l~~lr~i~~gG~~l~~~~~~~  328 (548)
T 2d1s_A          296 ILNKSELL-----------------------------------------------NKYDLSNLVEIASGGAPLSKEVGEA  328 (548)
T ss_dssp             HHHHCSCG-----------------------------------------------GGSCCTTCCEEEECSSCCCHHHHHH
T ss_pred             HHHhCccc-----------------------------------------------ccccccceeEEEEcCccCCHHHHHH
Confidence            88652100                                               0011248999999999999999999


Q ss_pred             HHhhc-CCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccC
Q 006354          465 INICM-GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN  543 (649)
Q Consensus       465 ~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~  543 (649)
                      +.+.+ ++++++.||+||++.+++.........+++|+|+|+++++|+|++++..   +++|+.|||+|+|++++.|||+
T Consensus       329 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~  405 (548)
T 2d1s_A          329 VARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKS---LGPNRRGEVCVKGPMLMKGYVN  405 (548)
T ss_dssp             HHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCSEETT
T ss_pred             HHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCcc---CCCCCCeEEEECCHHHhhhhcC
Confidence            99888 6889999999999887766554455678999999999999999666654   7899999999999999999999


Q ss_pred             CCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCc
Q 006354          544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKL  623 (649)
Q Consensus       544 ~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~  623 (649)
                      +|+.|++.|.  .+  |||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..
T Consensus       406 ~~~~t~~~f~--~~--g~~~TGDl~~~~~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~V~~~~~~~~  479 (548)
T 2d1s_A          406 NPEATKELID--EE--GWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIF-DAGVAGVPDPVA  479 (548)
T ss_dssp             CHHHHHHHBC--TT--SCEEEEEEEEECTTCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEE-EEEEEEEEETTT
T ss_pred             ChHHhhhccc--CC--cEEEccCEEEEcCCCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcc-EEEEEEEEcCCC
Confidence            9999999996  56  89999999999999999999999999998 599999999999999999999 999999998877


Q ss_pred             ccchhhhh
Q 006354          624 ASSTKIFQ  631 (649)
Q Consensus       624 ~~~~~~~~  631 (649)
                      |+.+.++.
T Consensus       480 g~~~~a~v  487 (548)
T 2d1s_A          480 GELPGAVV  487 (548)
T ss_dssp             EEEEEEEE
T ss_pred             CeeeEEEE
Confidence            76555444

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2.3e-71  Score=617.11  Aligned_cols=460  Identities=18%  Similarity=0.206  Sum_probs=364.7

Q ss_pred             ccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCce
Q 006354           50 QRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYE  129 (649)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~  129 (649)
                      |..+..+...+++.+....+   ....+++...|+.++|+++++++|+++|+.+            +++           
T Consensus        10 ~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~------------~~~-----------   63 (563)
T 1amu_A           10 IHAQNKNGTHEEEQYLFAVN---NTKAEYPRDKTIHQLFEEQVSKRPNNVAIVC------------ENE-----------   63 (563)
T ss_dssp             -------CCCHHHHHHHHTT---CCCCCCCTTCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------
T ss_pred             ccccccCCHHHHHHHHHHhC---CCCCCCCCCCcHHHHHHHHHHHCCCCeEEEe------------CCc-----------
Confidence            56667777777766554333   2334455567999999999999999999986            333           


Q ss_pred             EEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEEC
Q 006354          130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD  209 (649)
Q Consensus       130 ~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  209 (649)
                      .+||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++
T Consensus        64 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~  143 (563)
T 1amu_A           64 QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQ  143 (563)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCC
Q 006354          210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGL  289 (649)
Q Consensus       210 ~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~  289 (649)
                      .+....+..+.    ....+..++...                     +..  ........+..++|+|+|+|||||||.
T Consensus       144 ~~~~~~~~~~~----~~~~~~~~~~~~---------------------~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~  196 (563)
T 1amu_A          144 KHLVHLIHNIQ----FNGQVEIFEEDT---------------------IKI--REGTNLHVPSKSTDLAYVIYTSGTTGN  196 (563)
T ss_dssp             GGGHHHHTTSC----CCSEEEECCCST---------------------TTT--SCCSCCCCCCCTTSEEEEEEEC-----
T ss_pred             Cchhhhhhhcc----ccCceeeecchh---------------------hcc--ccCccCCCCCCCCCeEEEEECCCCCCC
Confidence            87655443221    111222222110                     000  011111234567899999999999999


Q ss_pred             cceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccce
Q 006354          290 PKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS  369 (649)
Q Consensus       290 PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~  369 (649)
                      ||||++||+++.+.+.+....+ ++.++|++++++|++|+.++..++.+++.|+++++.+.....+.     ..+...++
T Consensus       197 PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~-----~~~~~~i~  270 (563)
T 1amu_A          197 PKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDF-----VKFEQYIN  270 (563)
T ss_dssp             CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCH-----HHHHHHHH
T ss_pred             CcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCH-----HHHHHHHH
Confidence            9999999999999988888888 89999999999999999999888899999999998543221111     12233389


Q ss_pred             eecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEE
Q 006354          370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF  449 (649)
Q Consensus       370 ~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~  449 (649)
                      ++++|++.++|+++..+...                                                     ..++||.
T Consensus       271 ~~~~t~~~~~P~~~~~l~~~-----------------------------------------------------~~~~lr~  297 (563)
T 1amu_A          271 QKEITVITLPPTYVVHLDPE-----------------------------------------------------RILSIQT  297 (563)
T ss_dssp             HTTCCEEEECHHHHTTSCTT-----------------------------------------------------TCCSCSE
T ss_pred             HcCCcEEEeCHHHHHHHHhc-----------------------------------------------------ccccccE
Confidence            99999999999998766321                                                     0148999


Q ss_pred             EEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCC---CCCCccCCCcccceEEEEecCCCCcccCCCCCC
Q 006354          450 MICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD---PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP  526 (649)
Q Consensus       450 i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~  526 (649)
                      +++||+++++++.+.|.+.  +++++.||+||++.+++......   ....++|+|+|+++++|+| +++..   +++|+
T Consensus       298 ~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~---~~~g~  371 (563)
T 1amu_A          298 LITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQL---KSVGE  371 (563)
T ss_dssp             EEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCB---CCTTC
T ss_pred             EEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCC---CCCCC
Confidence            9999999999999998874  88999999999988766543222   2457899999999999999 55544   78999


Q ss_pred             ccEEEEccccccccccCCCccchhhhccCC--CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhc
Q 006354          527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTT  604 (649)
Q Consensus       527 ~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~  604 (649)
                      .|||+|+|++++.|||++|+.|+++|..++  ++.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.
T Consensus       372 ~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~  450 (563)
T 1amu_A          372 AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILL  450 (563)
T ss_dssp             EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHT
T ss_pred             cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEE-CCEEeCHHHHHHHHH
Confidence            999999999999999999999999996431  34579999999999999999999999999998 599999999999999


Q ss_pred             cCcccccceEEEecCCCCcccchhh
Q 006354          605 VLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       605 ~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                      +||+|. +|+|++.++...++.+.+
T Consensus       451 ~~p~V~-~a~Vv~~~~~~~~~~~~a  474 (563)
T 1amu_A          451 KHMYIS-ETAVSVHKDHQEQPYLCA  474 (563)
T ss_dssp             TSTTEE-EEEEEEEECTTSCEEEEE
T ss_pred             hCCCcc-eEEEEEeecCCCCeEEEE
Confidence            999999 999999988776654433

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=3.7e-71  Score=607.99  Aligned_cols=439  Identities=23%  Similarity=0.339  Sum_probs=364.3

Q ss_pred             HHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC
Q 006354           86 ALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC  165 (649)
Q Consensus        86 ~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~  165 (649)
                      ++|+++++++|+++|+....         .+|+           ++||+||.++++++|++|+++|+++||+|+|+++|+
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~---------~~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~   63 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIET---------AAGD-----------KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS   63 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEE---------TTCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC
T ss_pred             hHHHHHHHhCCCCceEEEec---------CCCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence            47899999999999998632         0343           699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCC
Q 006354          166 VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG  245 (649)
Q Consensus       166 ~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~  245 (649)
                      +++++++|||+++|+++||++|.++.+++.+++++++++++|++.+..+.+..+......  .++.++....        
T Consensus        64 ~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------  133 (503)
T 4fuq_A           64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR--------  133 (503)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC--------
T ss_pred             HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc--------
Confidence            999999999999999999999999999999999999999999998876655544333221  2333222110        


Q ss_pred             CCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccC
Q 006354          246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLP  325 (649)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~p  325 (649)
                             ..+.+.... ...........++|+|+|+|||||||.||||++||+++.+.+......+ +++++|++++.+|
T Consensus       134 -------~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p  204 (503)
T 4fuq_A          134 -------GSLTDAAAG-ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALP  204 (503)
T ss_dssp             -------SHHHHHHHT-SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSC
T ss_pred             -------cccchhhhc-CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCC
Confidence                   112222221 1222233456789999999999999999999999999999999999888 9999999999999


Q ss_pred             hHHHHHHHH-HHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchh
Q 006354          326 LAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT  401 (649)
Q Consensus       326 l~h~~~~~~-~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~  401 (649)
                      ++|.+++.. .+.+++.|+++++.   ++..+.+.           ++  ++|+++++|+++..+.+....         
T Consensus       205 ~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~--~~t~~~~~P~~~~~l~~~~~~---------  262 (503)
T 4fuq_A          205 IYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDL-----------MA--RATVLMGVPTFYTRLLQSPRL---------  262 (503)
T ss_dssp             SSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHH-----------HT--TCCEEEECHHHHHHHHTCTTC---------
T ss_pred             hHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHH-----------Hh--hcCEEEEHHHHHHHHHhCCCc---------
Confidence            999998755 67789999999884   44444444           65  899999999999988753110         


Q ss_pred             HHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCccc
Q 006354          402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE  481 (649)
Q Consensus       402 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE  481 (649)
                                                            .....+++|.+++||+++++++.+.|.+.++++++|.||+||
T Consensus       263 --------------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE  304 (503)
T 4fuq_A          263 --------------------------------------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTE  304 (503)
T ss_dssp             --------------------------------------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETT
T ss_pred             --------------------------------------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccc
Confidence                                                  001124899999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccc
Q 006354          482 TCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW  561 (649)
Q Consensus       482 ~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w  561 (649)
                      ++..++.........+++|+|+||++++|+|++++..   +++|+.|||+|+|++++.|||++|+.|++.|.  .+  ||
T Consensus       305 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~--~~--g~  377 (503)
T 4fuq_A          305 TNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKE---LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFR--DD--GF  377 (503)
T ss_dssp             TEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCCCBTTCHHHHHHTBC--TT--SC
T ss_pred             cCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCC---CcCCCceEEEEECCchhhhhcCChhhhHhhhC--CC--CC
Confidence            9887665544555678999999999999999776654   78999999999999999999999999999996  56  89


Q ss_pred             eeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhh
Q 006354          562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQS  632 (649)
Q Consensus       562 ~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~  632 (649)
                      |+|||+|++|+||+|+|+||+||+||++ |++|+|.|||++|.+||+|. +|+|++.+++..++.+.++..
T Consensus       378 ~~TGDl~~~~~dG~l~~~GR~dd~ik~~-G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~~~~~~~a~v~  446 (503)
T 4fuq_A          378 FITGDLGKIDERGYVHILGRGKDLVITG-GFNVYPKEIESEIDAMPGVV-ESAVIGVPHADFGEGVTAVVV  446 (503)
T ss_dssp             EEEEEEEEECTTCEEEECCSSTTCEEET-TEEECHHHHHHHHHTSTTEE-EEEEEEEEETTTEEEEEEEEE
T ss_pred             eEcceeEEEcCCCcEEEEecCCCEEEEC-CEEECHHHHHHHHHhCCCee-EEEEEEeEchhcCceeEEEEE
Confidence            9999999999999999999999999985 99999999999999999999 999999988877765554443

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=8.2e-71  Score=610.49  Aligned_cols=441  Identities=21%  Similarity=0.251  Sum_probs=365.1

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|+++++++|+++|+.+            ++           +.+||+||.++++++|++|+++|+++||+|+|
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i   80 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVV   80 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEe------------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            36999999999999999999986            33           36999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH-----HHHHHhhccCCCccEEEEecCC
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFEND  235 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~ii~~~~~  235 (649)
                      +++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+..     ..+..+....+.++.++..++.
T Consensus        81 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (539)
T 1mdb_A           81 QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA  160 (539)
T ss_dssp             CCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC
T ss_pred             EcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc
Confidence            99999999999999999999999999999999999999999999999987532     2333343445566666554321


Q ss_pred             CCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCC
Q 006354          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG  315 (649)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~  315 (649)
                      ..                 +.++..... .........++|+|+|+|||||||.||||++||+++++.+......+ +++
T Consensus       161 ~~-----------------~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~  221 (539)
T 1mdb_A          161 EE-----------------FLPLEDLHT-EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLD  221 (539)
T ss_dssp             TT-----------------SEEGGGCCC-CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCC
T ss_pred             cc-----------------hhhhhhccc-cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCC
Confidence            10                 111111111 11122445789999999999999999999999999999998888887 889


Q ss_pred             CCcEEEEccChHHHHHHHH--HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHH
Q 006354          316 RSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (649)
Q Consensus       316 ~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~  390 (649)
                      ++|++++.+|++|.+++..  ++.+++.|+++++.+   +..+.+.           ++++++|+++++|+++..+.+..
T Consensus       222 ~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~  290 (539)
T 1mdb_A          222 HSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAA  290 (539)
T ss_dssp             TTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHH
T ss_pred             CCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHcCCeEEEccHHHHHHHHhCc
Confidence            9999999999999999874  788999999999943   3444444           99999999999999999987643


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC
Q 006354          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG  470 (649)
Q Consensus       391 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~  470 (649)
                      ...                                               ....++||.+++||+++++++.+.+.+.+|
T Consensus       291 ~~~-----------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~  323 (539)
T 1mdb_A          291 SSR-----------------------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFG  323 (539)
T ss_dssp             HHC-----------------------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTC
T ss_pred             ccc-----------------------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhC
Confidence            210                                               011258999999999999999999998889


Q ss_pred             CccccccCcccccccccccCCC-CCCCCccCCCccc-ceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccc
Q 006354          471 APIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPC-CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT  548 (649)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~-~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t  548 (649)
                      +++++.||+||++..++..... ....+++|+|+++ .+++|+| +++..   +++|+.|||+|+|++++.|||++|+.|
T Consensus       324 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t  399 (539)
T 1mdb_A          324 CTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRD---VKPGETGHLLTRGPYTIRGYYKAEEHN  399 (539)
T ss_dssp             SEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTSCSSCTTCHHHH
T ss_pred             CcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEEC-CCCCC---CcCCCcceEEeeCcccchhhcCChhhh
Confidence            9999999999976443322111 1234789999976 4899999 55543   789999999999999999999999999


Q ss_pred             hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354          549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~  628 (649)
                      +++|.  .+  |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..|+.+.
T Consensus       400 ~~~f~--~~--g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~~g~~~~  473 (539)
T 1mdb_A          400 AASFT--ED--GFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVH-DAAMVSMPDQFLGERSC  473 (539)
T ss_dssp             HHHBC--TT--SCEEEEEEEEECTTSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEE
T ss_pred             hhhcc--CC--CCeecCceEEECCCCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEeccccccCceEE
Confidence            99997  56  89999999999999999999999999997 599999999999999999999 99999998887765554


Q ss_pred             hhh
Q 006354          629 IFQ  631 (649)
Q Consensus       629 ~~~  631 (649)
                      ++.
T Consensus       474 a~v  476 (539)
T 1mdb_A          474 VFI  476 (539)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=2.1e-70  Score=603.53  Aligned_cols=439  Identities=22%  Similarity=0.303  Sum_probs=326.3

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|+++|+++||++|+.+            +++           ++||+||.++++++|++|+++|+++||+|+|
T Consensus         5 ~~tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i   61 (509)
T 3ivr_A            5 DFTLADVYRRNAALFPDRTAFMV------------DGV-----------RLTHRDYLARAERLASGLLRDGVHTGDRVAI   61 (509)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             cCCHHHHHHHHHHHCCCceEEEE------------CCc-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            36999999999999999999986            443           6999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+....+.......+.++.++.+++...   
T Consensus        62 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  138 (509)
T 3ivr_A           62 LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG---  138 (509)
T ss_dssp             ECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS---
T ss_pred             EcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc---
Confidence            99999999999999999999999999999999999999999999999999988876666666777777777654211   


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  320 (649)
                                   .+.++...............++|+++|+|||||||.||||++||+++++.+.+....+ +++++|++
T Consensus       139 -------------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~  204 (509)
T 3ivr_A          139 -------------PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVN  204 (509)
T ss_dssp             -------------SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEE
T ss_pred             -------------ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEE
Confidence                         1112222122222334566789999999999999999999999999999999999888 99999999


Q ss_pred             EEccChHHHHHHHHHHHHHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354          321 LAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (649)
Q Consensus       321 l~~~pl~h~~~~~~~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~  397 (649)
                      ++++|++|++++...+.++..|++.++   +++..+.+.           ++++++|+++++|+++..+.+....     
T Consensus       205 l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~-----  268 (509)
T 3ivr_A          205 LGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARD-----------IEAHKVTVMAEFAPMLGNILDQAAP-----  268 (509)
T ss_dssp             EECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEEETTHHHHHHHHCCG-----
T ss_pred             EEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHH-----------HHHHCCcEEEecHHHHHHHHhcccc-----
Confidence            999999999999887776666666655   344444444           9999999999999999998764200     


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccc
Q 006354          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA  476 (649)
Q Consensus       398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~  476 (649)
                                                                  ...+++|.++.+|++   ++.+.+.+.+ +++++|.
T Consensus       269 --------------------------------------------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~  301 (509)
T 3ivr_A          269 --------------------------------------------AQLASLRAVTGLDTP---ETIERFEATCPNATFWAT  301 (509)
T ss_dssp             --------------------------------------------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEE
T ss_pred             --------------------------------------------cchhhhheecccCCh---HHHHHHHHhcCCCeEEcc
Confidence                                                        011489999999988   7777777777 8999999


Q ss_pred             cCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC
Q 006354          477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE  556 (649)
Q Consensus       477 YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~  556 (649)
                      ||+||++++++.....+ ...++|+|+++++++|+| +++..   +++|+.|||+|+|++++.|||++|+.|++.|   .
T Consensus       302 YG~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f---~  373 (509)
T 3ivr_A          302 FGQSETSGLSTFAPYRD-RPKSAGRPLFWRTVAVVD-AEDRP---LPPGEVGEIVLRGPTVFKGYWNNAAATQHAF---R  373 (509)
T ss_dssp             EEEGGGTEEEEEEEGGG-STTSCCEECTTCEEEEEC-TTSCB---CCTTCCEEEEEESTTSCCEETTCHHHHHHHT---G
T ss_pred             cCccccccccccCcccc-CCCcccccCCCcEEEEEC-CCCCC---CCCCCceEEEEecCCccccccCCHHHhHHHh---h
Confidence            99999998777654432 234599999999999999 45543   7899999999999999999999999999999   5


Q ss_pred             CcccceeeCcEEEEccCCeEEEEecC--CCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhhhh
Q 006354          557 RGMCWFYTGDIGQVYPDGCLEIIDRK--KDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQSCV  634 (649)
Q Consensus       557 ~~~~w~~TGDlg~~~~dG~l~i~GR~--dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~~~  634 (649)
                      +  |||+|||+|++++||+++|+||.  ||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.++....
T Consensus       374 ~--g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~-~a~vv~~~~~~~~~~~~a~v~~~  449 (509)
T 3ivr_A          374 N--GWHHTGDMGRFDADGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIA-DAVVIGVPDPQWSEAIKAVCVCK  449 (509)
T ss_dssp             G--GSEEEEEEEEECTTSCEEEEEEC------------------------------------------------------
T ss_pred             c--CCcccccEEEECCCceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCce-eEEEEeccccccCcEEEEEEEeC
Confidence            6  89999999999999999999999  999997 599999999999999999999 99999999999888777766654

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=3.1e-70  Score=601.36  Aligned_cols=434  Identities=20%  Similarity=0.273  Sum_probs=355.2

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      +|+.++|+++++++||++|+.+..          ++           +++||+||.++++++|++|+++|+++||+|+|+
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~   60 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAVV   60 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETT----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcC----------CC-----------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            589999999999999999998621          13           379999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEE--CchhHHHH-HHhhccCCCccEEEEecCCCCC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC--DSKQLKKL-SAVSSSLKTIKNVIYFENDGSE  238 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~l-~~~~~~~~~~~~ii~~~~~~~~  238 (649)
                      ++|++++++++|||+++|+++||++|.++++++.+++++++++++|+  +.+..+.+ ...    +.++ ++        
T Consensus        61 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~--------  127 (504)
T 1t5h_X           61 APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II--------  127 (504)
T ss_dssp             CCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE--------
T ss_pred             cCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE--------
Confidence            99999999999999999999999999999999999999999999999  76655544 221    1222 22        


Q ss_pred             ccCCCCCCCCCceEeehHHHHhcCC----CCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC
Q 006354          239 KDSGVSGGISNWTVSSFSEVEKLGK----RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (649)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~  314 (649)
                                     .++++.....    ..........++|+|+|+|||||||.||||++||+++.+.+......+ ++
T Consensus       128 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~  191 (504)
T 1t5h_X          128 ---------------FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GL  191 (504)
T ss_dssp             ---------------EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CC
T ss_pred             ---------------EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CC
Confidence                           2222221110    111112345689999999999999999999999999999998888777 77


Q ss_pred             --CCCcEEEEccChHHHHHHH-HHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354          315 --GRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (649)
Q Consensus       315 --~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~  388 (649)
                        +++|++++.+|++|++++. .++.++..|+++++.+   |..+.+.           ++++++|+++++|++++.+.+
T Consensus       192 ~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~  260 (504)
T 1t5h_X          192 RHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAA  260 (504)
T ss_dssp             CSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHH
T ss_pred             CCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHhCCeEEEeChHHHHHHHh
Confidence              8899999999999999985 4788999999999943   4444444           999999999999999999876


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (649)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~  468 (649)
                      .......                                             ....++||.+++||+++++++.+.|++.
T Consensus       261 ~~~~~~~---------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~  295 (504)
T 1t5h_X          261 AAAHAGS---------------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQH  295 (504)
T ss_dssp             HHCCTTC---------------------------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred             hhccccc---------------------------------------------cccCccccEEEEcCCcCCHHHHHHHHHh
Confidence            4210000                                             0012489999999999999999999999


Q ss_pred             cCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEc-cccccccccCCCcc
Q 006354          469 MGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG-GFNVTAGYFNNPGK  547 (649)
Q Consensus       469 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~-g~~v~~gY~~~~~~  547 (649)
                      +++.++|.||+||++. +....  ....+++|.|.++++++|+| +++.....+++|+.|||+|+ |++++.||+++|+.
T Consensus       296 ~~~~~~~~YG~TE~~~-~~~~~--~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~  371 (504)
T 1t5h_X          296 LPGEKVNIYGTTEAMN-SLYMR--QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA  371 (504)
T ss_dssp             CCSEEEEEEEETTTEE-EEEEE--SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHH
T ss_pred             cCcceeeeeccccccc-ccccc--CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchh
Confidence            9999999999999833 22222  34568899999999999999 44422234889999999999 99999999999999


Q ss_pred             chhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       548 t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      |++.|   .+  |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..|+.+
T Consensus       372 t~~~f---~~--g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~Vv~~~~~~~g~~~  444 (504)
T 1t5h_X          372 TAEKL---QD--GWYRTSDVAVWTPEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVT-EVVVIGLADQRWGQSV  444 (504)
T ss_dssp             HHHHE---ET--TEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEE-EEEEEEEECSSSSEEE
T ss_pred             hhhhh---cC--CccccCcEEEECCCceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEEeecCCCCcEE
Confidence            99999   56  89999999999999999999999999997 599999999999999999999 9999999988877665


Q ss_pred             hhhhh
Q 006354          628 KIFQS  632 (649)
Q Consensus       628 ~~~~~  632 (649)
                      .++..
T Consensus       445 ~a~vv  449 (504)
T 1t5h_X          445 TACVV  449 (504)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55544

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=5.7e-71  Score=619.28  Aligned_cols=429  Identities=17%  Similarity=0.155  Sum_probs=350.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 006354           80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA  159 (649)
Q Consensus        80 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~  159 (649)
                      ...|++++|+++|+++||++|+.+            .+           +.+||+||.++++++|++|+++|+++||+|+
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~   81 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRD------------RF-----------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLG   81 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEE
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEc------------CC-----------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            347999999999999999999986            22           2699999999999999999999999999999


Q ss_pred             EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCc
Q 006354          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK  239 (649)
Q Consensus       160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~  239 (649)
                      |+++|++++++++|||+++|+++||+||.++.+++.++++++++++++++.......       ..+.            
T Consensus        82 i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~------------  142 (620)
T 4dg8_A           82 VYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLP------------  142 (620)
T ss_dssp             EESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSC------------
T ss_pred             EEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCc------------
Confidence            999999999999999999999999999999999999999999999999765432110       0010            


Q ss_pred             cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  319 (649)
                                  ...+....  ............++|+|||+|||||||.||||+++|+++.+.+.. ...+ .+.++|+
T Consensus       143 ------------~~~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~  206 (620)
T 4dg8_A          143 ------------CVPVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMR  206 (620)
T ss_dssp             ------------EEEGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCE
T ss_pred             ------------eeeeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCE
Confidence                        11111100  001111223456899999999999999999999999999887765 4445 7889999


Q ss_pred             EEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcc
Q 006354          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~  399 (649)
                      +++++|++|+.++..++.+|+.|+++++.+...+ +     +..+...++++++|+++++|++++.+.+....       
T Consensus       207 ~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-------  273 (620)
T 4dg8_A          207 FLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPL-D-----PGVLRQLIGERGADSAWLTASLFNTLVDLDPD-------  273 (620)
T ss_dssp             EEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSC-C-----HHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGG-------
T ss_pred             EEEECccCHHHHHHHHHHHHhcCCEEEeCccccC-C-----HHHHHHHHHHhCCcEEEccHHHHHHHHhcChh-------
Confidence            9999999999999999999999999998532111 1     12233339999999999999999988652100       


Q ss_pred             hhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccC
Q 006354          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG  478 (649)
Q Consensus       400 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG  478 (649)
                                                                 ..++||.+++||++++++..+.+...+ +++++|.||
T Consensus       274 -------------------------------------------~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG  310 (620)
T 4dg8_A          274 -------------------------------------------CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYG  310 (620)
T ss_dssp             -------------------------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred             -------------------------------------------hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEc
Confidence                                                       014899999999999988876665554 899999999


Q ss_pred             cccccccccccCCC----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhcc
Q 006354          479 LTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV  554 (649)
Q Consensus       479 ~TE~~~~~~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~  554 (649)
                      +||++++++.....    .....++|+|++|++++|+| +++..  .+++|+.|||||+|+++++||+|+|+.|+++|..
T Consensus       311 ~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~--~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~  387 (620)
T 4dg8_A          311 PTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQE--IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVE  387 (620)
T ss_dssp             CGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCB--CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEE
T ss_pred             hhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCC--CCCCCCceEEEEeccccccccCCChhhhhhhhcc
Confidence            99999877654332    23457999999999999999 44443  2678999999999999999999999999999974


Q ss_pred             CC-Ccc--cceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354          555 DE-RGM--CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       555 ~~-~~~--~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      ++ ++.  +||||||+|++++||+|+|+||+||+||++ |+||+|.|||++|.+||+|. +|+|++.++...++.+
T Consensus       388 ~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~-G~ri~~~eIE~~l~~~p~V~-~a~Vv~~~~~~~~~lv  461 (620)
T 4dg8_A          388 LPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLN-GYRLDLPALEQRFRRQPGIL-DCALLVRERNGVKQLL  461 (620)
T ss_dssp             EEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEET-TEEEEHHHHHHHHHTSTTEE-EEEEEEEEETTEEEEE
T ss_pred             CCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEEC-CEEcCHHHHHHHHHhCCCcc-EEEEEEEeCCCceEEE
Confidence            32 122  799999999999999999999999999995 99999999999999999999 9999998877655444

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=8.7e-71  Score=614.42  Aligned_cols=437  Identities=21%  Similarity=0.235  Sum_probs=313.8

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 006354           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (649)
Q Consensus        79 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (649)
                      +...+++++|+++++++||++|+++            +++           .+||+||.++++++|++|+++|+++||+|
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V  128 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLH------------EAD-----------ELTYGALNERANRLAHRLVGLGVAPGTLV  128 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEEC------------CCC-----------cEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            3457999999999999999999986            333           69999999999999999999999999999


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCC
Q 006354          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE  238 (649)
Q Consensus       159 ~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~  238 (649)
                      +|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+....+       .....++..+..   
T Consensus       129 ~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~---  198 (570)
T 4gr5_A          129 GVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------TGTTTLYVEDEA---  198 (570)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------CSSEEEECCC-----
T ss_pred             EEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------cCCcceeeeccc---
Confidence            9999999999999999999999999999999999999999999999999997653322       122211111100   


Q ss_pred             ccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCc
Q 006354          239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD  318 (649)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d  318 (649)
                                           ..............++|+|+|+|||||||.||||++||+++.+.+.. ...+ .++++|
T Consensus       199 ---------------------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d  255 (570)
T 4gr5_A          199 ---------------------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDE  255 (570)
T ss_dssp             --------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTC
T ss_pred             ---------------------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCC
Confidence                                 00011112234567899999999999999999999999999876654 3344 788999


Q ss_pred             EEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhc
Q 006354          319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (649)
Q Consensus       319 ~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~  398 (649)
                      ++++++|++|..+...++.+++.|+++++.+.... +     +..+...++++++|++.++|++++.+.+....      
T Consensus       256 ~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------  323 (570)
T 4gr5_A          256 VFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNP-D-----PLEIGELVARHGVTMLQLSASLFNFLVDEVPE------  323 (570)
T ss_dssp             EEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSC-C-----HHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG------
T ss_pred             EEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccC-C-----HHHHHHHHHHcCCcEEEecHHHHHHHHhhchh------
Confidence            99999999998777778889999999998443211 1     11223339999999999999999988753211      


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCcccccc
Q 006354          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY  477 (649)
Q Consensus       399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~Y  477 (649)
                                                                  ..++||.+++||+++++++.+.+.+.+ ++++++.|
T Consensus       324 --------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  359 (570)
T 4gr5_A          324 --------------------------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGY  359 (570)
T ss_dssp             --------------------------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred             --------------------------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEee
Confidence                                                        014899999999999999888777766 89999999


Q ss_pred             CcccccccccccCCC----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhc
Q 006354          478 GLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK  553 (649)
Q Consensus       478 G~TE~~~~~~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~  553 (649)
                      |+||++++++.....    .....++|+|++|++++|+| +++..   +++|+.|||+|+|++++.|||++|+.|+++|.
T Consensus       360 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~---~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~  435 (570)
T 4gr5_A          360 GPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKP---AANGALGELYVAGAGLAHGYVSRPALTAERFV  435 (570)
T ss_dssp             CCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCB---CCTTCEEEEEEEETTCCCEETTCHHHHHHHEE
T ss_pred             chhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCC---CCCCCcEEEEEeecccchhcCCCchhhhcccc
Confidence            999998877654322    23346799999999999999 55544   78999999999999999999999999999997


Q ss_pred             cC----CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354          554 VD----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       554 ~~----~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                      .+    .++.|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.+
T Consensus       436 ~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~-~a~Vv~~~~~~~~~~~~a  513 (570)
T 4gr5_A          436 ADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVR-QAAVLAQDSRLGDKQLVA  513 (570)
T ss_dssp             ECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------------
T ss_pred             cCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcc-eEEEEEeeCCCCCeEEEE
Confidence            43    134589999999999999999999999999998 699999999999999999999 999999998888877766


Q ss_pred             hhhh
Q 006354          630 FQSC  633 (649)
Q Consensus       630 ~~~~  633 (649)
                      +...
T Consensus       514 ~vv~  517 (570)
T 4gr5_A          514 YVVA  517 (570)
T ss_dssp             ----
T ss_pred             EEEe
Confidence            6554

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=6.3e-70  Score=606.52  Aligned_cols=445  Identities=16%  Similarity=0.248  Sum_probs=373.4

Q ss_pred             CCHHHHHHHHHHh-----CCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHC-CCCCC
Q 006354           82 STMAALFEQSCKS-----HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVD  155 (649)
Q Consensus        82 ~tl~~~~~~~a~~-----~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~-Gv~~g  155 (649)
                      +++.++|++++++     +|+++|+.+.           ++.       +..+++||+||.++++++|++|+++ |+++|
T Consensus        38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~-----------~~~-------g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~g   99 (570)
T 3c5e_A           38 NFASDVLDHWADMEKAGKRPPSPALWWV-----------NGK-------GKELMWNFRELSENSQQAANVLSGACGLQRG   99 (570)
T ss_dssp             CHHHHTHHHHHHHHHTTSSCCCEEEEEE-----------CSS-------SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTT
T ss_pred             cHHHHHHHHHHhhccccCCCCceEEEEE-----------cCC-------CceeEEeHHHHHHHHHHHHHHHHHccCCCCC
Confidence            5678999999999     9999999874           211       1225799999999999999999999 99999


Q ss_pred             CEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCC
Q 006354          156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND  235 (649)
Q Consensus       156 d~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~  235 (649)
                      |+|+|+++|++++++++|||+++|+++||++|.++++++.+++++++++++|++.+..+.+..+....+.++.++.+++.
T Consensus       100 d~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (570)
T 3c5e_A          100 DRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK  179 (570)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSS
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEeccc
Confidence            99999999999999999999999999999999999999999999999999999998888887776667777777776542


Q ss_pred             CCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHH--HHHHHHhhCCC
Q 006354          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA--TAAAIKTLIPN  313 (649)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~--~~~~~~~~~~~  313 (649)
                      ...            ...+++++....... .......++|+|+|+|||||||.||||++||+ ++.  ..... ..+ +
T Consensus       180 ~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~  243 (570)
T 3c5e_A          180 SCD------------GWLNFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-G  243 (570)
T ss_dssp             CCT------------TSEEHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-S
T ss_pred             Ccc------------ccccHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-C
Confidence            110            124566665443322 22345678999999999999999999999999 554  33333 555 8


Q ss_pred             CCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC-----cccccccchhhccCccccceeecceEEEechHHHHHHH
Q 006354          314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS-----TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR  387 (649)
Q Consensus       314 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~-----~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~  387 (649)
                      +.++|++++++|++|++++.. ++.++..|+++++.+     +..+.+.           ++++++|+++++|++++.+.
T Consensus       244 ~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~  312 (570)
T 3c5e_A          244 LQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-----------LSSYPIKSMMGAPIVYRMLL  312 (570)
T ss_dssp             CCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHH
T ss_pred             CCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHH
Confidence            889999999999999999874 778899999999843     3334343           99999999999999999886


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHh
Q 006354          388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI  467 (649)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~  467 (649)
                      +..   .                                             .....++||.+++||+++++++.+.|.+
T Consensus       313 ~~~---~---------------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~  344 (570)
T 3c5e_A          313 QQD---L---------------------------------------------SSYKFPHLQNCVTVGESLLPETLENWRA  344 (570)
T ss_dssp             TSC---T---------------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred             hcc---c---------------------------------------------cccccccceEEEEcCCcCCHHHHHHHHH
Confidence            520   0                                             0011258999999999999999999999


Q ss_pred             hcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEc-----ccccccccc
Q 006354          468 CMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG-----GFNVTAGYF  542 (649)
Q Consensus       468 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~-----g~~v~~gY~  542 (649)
                      .+|+++++.||+||++..++.........+++|+|+|+++++|+| +++..   +++|+.|||+|+     |++++.|||
T Consensus       345 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~---~~~G~~GEl~v~~~~~~g~~v~~GY~  420 (570)
T 3c5e_A          345 QTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNV---LPPGTEGDIGIRVKPIRPIGIFSGYV  420 (570)
T ss_dssp             HHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEEC-TTSCB---CCTTCCEEEEEECSSBCCTTCCCEET
T ss_pred             HhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEEC-CCCCC---CCCCCCCeeEEeccCCCCchhhcccc
Confidence            889999999999999877666554455678999999999999999 55554   789999999999     999999999


Q ss_pred             CCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354          543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK  622 (649)
Q Consensus       543 ~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~  622 (649)
                      ++|+.|++.|   .+  +||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++.
T Consensus       421 ~~~~~t~~~f---~~--~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~-~a~Vv~~~~~~  493 (570)
T 3c5e_A          421 DNPDKTAANI---RG--DFWLLGDRGIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVV-ETAVISSPDPV  493 (570)
T ss_dssp             TCHHHHHHTE---ET--TEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEE-EEEEEEEEETT
T ss_pred             CChhHhhhhh---cC--CccccceeEEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEeeeCCC
Confidence            9999999999   45  89999999999999999999999999997 599999999999999999999 99999998877


Q ss_pred             cccchhhh
Q 006354          623 LASSTKIF  630 (649)
Q Consensus       623 ~~~~~~~~  630 (649)
                      .++.+.++
T Consensus       494 ~g~~~~a~  501 (570)
T 3c5e_A          494 RGEVVKAF  501 (570)
T ss_dssp             TEEEEEEE
T ss_pred             CCeEEEEE
Confidence            66554443

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=7.8e-70  Score=614.92  Aligned_cols=470  Identities=17%  Similarity=0.204  Sum_probs=376.0

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      ++++++|+++++++||++|+++..          +.       .+..+.+||+||.++++++|++|+++|+++||+|+|+
T Consensus        76 n~~~~~l~~~a~~~pd~~Al~~~~----------~~-------~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~  138 (652)
T 1pg4_A           76 NLAANCLDRHLQENGDRTAIIWEG----------DD-------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY  138 (652)
T ss_dssp             CHHHHHTGGGHHHHTTSEEEEEEC----------SS-------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             hHHHHHHHHHhccCCCceEEEEEc----------CC-------CCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            578999999999999999999742          10       1233579999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH---------HHHHHhhccCC--CccEEE
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLK--TIKNVI  230 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~--~~~~ii  230 (649)
                      ++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++...         +.+.++....+  .++.++
T Consensus       139 ~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi  218 (652)
T 1pg4_A          139 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI  218 (652)
T ss_dssp             CCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEE
T ss_pred             eCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEE
Confidence            9999999999999999999999999999999999999999999999986542         23444433332  456777


Q ss_pred             EecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHH-HHHh
Q 006354          231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA-AIKT  309 (649)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~-~~~~  309 (649)
                      .++......     ... .....+|+++...... ........++|++||+|||||||.||||++||++++..+. ....
T Consensus       219 ~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~  291 (652)
T 1pg4_A          219 VLKRTGSDI-----DWQ-EGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY  291 (652)
T ss_dssp             EECSSCCCC-----CCC-BTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH
T ss_pred             EEeCCCCcc-----ccc-CCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH
Confidence            765432111     000 1123567777654322 1223445689999999999999999999999999887764 4455


Q ss_pred             hCCCCCCCcEEEEccChHHHHHHH-HHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354          310 LIPNPGRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (649)
Q Consensus       310 ~~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~  388 (649)
                      .+ .+.++|++++++|++|+++.. .++.+|+.|+++++.+.......    +..++..++++++|+++++|++++.+.+
T Consensus       292 ~~-~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~  366 (652)
T 1pg4_A          292 VF-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT----PARMCQVVDKHQVNILYTAPTAIRALMA  366 (652)
T ss_dssp             HT-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS----TTHHHHHHHHHTCSEEEECHHHHHHHHT
T ss_pred             hc-CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHHHHh
Confidence            67 889999999999999999984 47889999999998442111111    1223344999999999999999998875


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (649)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~  468 (649)
                      .....                                             .+....++||.+++||+++++++.+++.+.
T Consensus       367 ~~~~~---------------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~  401 (652)
T 1pg4_A          367 EGDKA---------------------------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKK  401 (652)
T ss_dssp             TGGGG---------------------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred             cCccc---------------------------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHH
Confidence            31100                                             001123589999999999999999999988


Q ss_pred             cC---CccccccCcccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcc--ccccccc
Q 006354          469 MG---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGY  541 (649)
Q Consensus       469 ~~---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY  541 (649)
                      +|   +++++.||+||+++.++.....  ....+++|+|++|++++|+| +++..   ++.|+.|||+|+|  |+++.||
T Consensus       402 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~---v~~g~~GEl~i~g~~p~~~~gY  477 (652)
T 1pg4_A          402 IGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHP---QEGATEGNLVITDSWPGQARTL  477 (652)
T ss_dssp             TTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCB---CCSSEEEEEEECSCCTTCCCEE
T ss_pred             hCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCC---cCCCceEEEEEccCCCchhhhh
Confidence            87   8999999999998776655432  34568999999999999999 55554   6788999999999  7999999


Q ss_pred             cCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCC
Q 006354          542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPM  621 (649)
Q Consensus       542 ~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~  621 (649)
                      |++|+.+.+.|....+  |||+|||+|++|+||+|+|+||+||+||++ |+||+|.|||++|.+||+|. +|+|+|.+++
T Consensus       478 ~~~~e~~~~~~~~~~~--g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~-G~rI~~~eIE~~l~~~p~V~-ea~Vvg~~~~  553 (652)
T 1pg4_A          478 FGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIA-EAAVVGIPHA  553 (652)
T ss_dssp             TTCHHHHHHHHHSSST--TSEEEEEEEEECTTSCEEEEEESSSEEEET-TEEEEHHHHHHHHHHSTTEE-EEEEEEEEET
T ss_pred             cCCHHHHHhhhhhcCC--CEEECCcEEEEcCCCcEEEEecCCCEEEEC-CEEECHHHHHHHHHhCCCcc-eEEEEEEEcC
Confidence            9999999888753234  899999999999999999999999999985 99999999999999999999 9999999888


Q ss_pred             Ccccchhhhhhh
Q 006354          622 KLASSTKIFQSC  633 (649)
Q Consensus       622 ~~~~~~~~~~~~  633 (649)
                      ..|+.+.++..+
T Consensus       554 ~~g~~l~a~Vv~  565 (652)
T 1pg4_A          554 IKGQAIYAYVTL  565 (652)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCCeEEEEEEEE
Confidence            777655555443

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=2.1e-69  Score=611.70  Aligned_cols=473  Identities=15%  Similarity=0.156  Sum_probs=379.1

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHH-HCCCCCCCEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAA  159 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~-~~Gv~~gd~V~  159 (649)
                      .++++++|+++++++||++|+++..          + .      .+..+++||+||.++++++|++|+ ++|+++||+|+
T Consensus        81 ~n~~~~~l~~~a~~~pd~~Al~~~~----------~-~------~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~  143 (663)
T 1ry2_A           81 LNACYNCVDRHALKTPNKKAIIFEG----------D-E------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVA  143 (663)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEEC----------S-S------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             ccHHHHHHHHHhccCCCceEEEEEc----------C-C------CCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            3688999999999999999999742          1 0      123357999999999999999999 99999999999


Q ss_pred             EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH---------HHHHHhhccCCCccEEE
Q 006354          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLKTIKNVI  230 (649)
Q Consensus       160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~~~~~ii  230 (649)
                      |+++|++++++++|||+++|++++|+++.++++++.++|++++++++|+++...         +.+.++....+.++.++
T Consensus       144 i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi  223 (663)
T 1ry2_A          144 VYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVL  223 (663)
T ss_dssp             ECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEE
T ss_pred             EEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEE
Confidence            999999999999999999999999999999999999999999999999976542         34455555556677787


Q ss_pred             EecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHH-HHh
Q 006354          231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKT  309 (649)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~-~~~  309 (649)
                      +++.......    .. ......+|+++...... ..+.....++|++||+|||||||.||||++||++++..+.. ...
T Consensus       224 ~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~  297 (663)
T 1ry2_A          224 VYRKTNNPSV----AF-HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY  297 (663)
T ss_dssp             EECSSCCSSC----CC-CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHH
T ss_pred             EEecCCCCcc----cc-CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHH
Confidence            7764321000    00 01123567776654322 22334557899999999999999999999999998877644 445


Q ss_pred             hCCCCCCCcEEEEccChHHHHHHH-HHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354          310 LIPNPGRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (649)
Q Consensus       310 ~~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~  388 (649)
                      .+ .+.++|++++++|++|+++.. .++.+|+.|+++++.+.......    ...++..|+++++|+++++|++++.+.+
T Consensus       298 ~~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~  372 (663)
T 1ry2_A          298 TF-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN----YSRYWDIIDEHKVTQFYVAPTALRLLKR  372 (663)
T ss_dssp             HS-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSC----TTHHHHHHHHTTCSEEEECHHHHHHHTT
T ss_pred             hc-CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCC----HHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence            66 889999999999999999985 47889999999998432111111    1223444999999999999999988864


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (649)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~  468 (649)
                      .....                                             .+....++||.+++||+++++++.+++.+.
T Consensus       373 ~~~~~---------------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~  407 (663)
T 1ry2_A          373 AGDSY---------------------------------------------IENHSLKSLRCLGSVGEPIAAEVWEWYSEK  407 (663)
T ss_dssp             SCTTS---------------------------------------------SSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred             cCccc---------------------------------------------cccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence            21000                                             001122589999999999999999999998


Q ss_pred             cC---CccccccCcccccccccccCC---CCCCCCccCCCcccceEEEEecCCCCcccCCCC-CCccEEEEcc--ccccc
Q 006354          469 MG---APIGQAYGLTETCAGSTFSEW---DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP-MPRGEIVVGG--FNVTA  539 (649)
Q Consensus       469 ~~---~~l~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~-g~~GEl~v~g--~~v~~  539 (649)
                      +|   +++++.||+||++..++....   ...+.+++|+|++|++++|+|.+++..   ++. |+.|||+|+|  |+++.
T Consensus       408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~---v~~~g~~Gel~i~g~~p~~~~  484 (663)
T 1ry2_A          408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEE---LNTSHAEGVLAVKAAWPSFAR  484 (663)
T ss_dssp             TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTC---EECSSCEEEEEESSCCTTSCC
T ss_pred             hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCc---CCCCCcceEEEEecCCCchhc
Confidence            87   899999999999876665433   234568999999999999999536654   445 8899999999  58999


Q ss_pred             cccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecC
Q 006354          540 GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNG  619 (649)
Q Consensus       540 gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~  619 (649)
                      |||++|+.|.+.|....+  |||+|||+|++|+||+|+|+||+||+||++ |+||+|.|||++|.+||.|. +|+|+|.+
T Consensus       485 gy~~~~~~~~~~~~~~~~--g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~-G~rI~~~eIE~~l~~~p~V~-ea~Vvg~~  560 (663)
T 1ry2_A          485 TIWKNHDRYLDTYLNPYP--GYYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVA-ECAVVGFN  560 (663)
T ss_dssp             EETTCHHHHHHHHTSSST--TSEEEEEEEEECTTCCEEECSCTTSCBCSS-SCCBCHHHHHHHHHSSTTEE-EEEEECCC
T ss_pred             ccccChHHHHHhhhcCCC--CEEEcCCEEEEcCCCCEEEEeecCCEEEEC-CEEcCHHHHHHHHHhCCCcc-eEEEEEEe
Confidence            999999999998863234  899999999999999999999999999985 99999999999999999999 99999999


Q ss_pred             CCCcccchhhhhhh
Q 006354          620 PMKLASSTKIFQSC  633 (649)
Q Consensus       620 ~~~~~~~~~~~~~~  633 (649)
                      ++..|+.+.+++.+
T Consensus       561 ~~~~g~~~~a~Vv~  574 (663)
T 1ry2_A          561 DDLTGQAVAAFVVL  574 (663)
T ss_dssp             CCTTSCCCEEEEEE
T ss_pred             cCCCCeEEEEEEEE
Confidence            88877766665543

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=3.1e-69  Score=607.24  Aligned_cols=448  Identities=17%  Similarity=0.222  Sum_probs=369.0

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 006354           78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR  157 (649)
Q Consensus        78 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~  157 (649)
                      +....|++++|+++++  ||++|+++            ++           +.+||+||.++++++|++|+++|+++||+
T Consensus        23 ~~~~~~l~~~~~~~a~--pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~   77 (617)
T 3rg2_A           23 YWQDLPLTDILTRHAA--SDSIAVID------------GE-----------RQLSYRELNQAADNLACSLRRQGIKPGET   77 (617)
T ss_dssp             SCCCCCTTHHHHTTTT--CCSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred             CCCcCCHHHHHHHhhC--CCCeEEec------------CC-----------ceEeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence            3455799999999988  99999986            33           36999999999999999999999999999


Q ss_pred             EEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH-----HHHHHhhccCCCccEEEEe
Q 006354          158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYF  232 (649)
Q Consensus       158 V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~ii~~  232 (649)
                      |+|+++|++++++++|||+++|+++||++|.++.+++.++++++++++++++....     ..+.......+.++.+...
T Consensus        78 V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (617)
T 3rg2_A           78 ALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLL  157 (617)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEE
T ss_pred             EEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeec
Confidence            99999999999999999999999999999999999999999999999999987654     3333334445555655554


Q ss_pred             cCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCC
Q 006354          233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP  312 (649)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~  312 (649)
                      +....               ..+.+....... .....+..++++|||+|||||||.||||+++|+++++.+.+....+ 
T Consensus       158 ~~~~~---------------~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-  220 (617)
T 3rg2_A          158 NDSGE---------------HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-  220 (617)
T ss_dssp             TCCST---------------TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-
T ss_pred             ccccc---------------cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-
Confidence            43221               123333332222 2223455789999999999999999999999999999999998888 


Q ss_pred             CCCCCcEEEEccChHHHHHHHH--HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHH
Q 006354          313 NPGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (649)
Q Consensus       313 ~~~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~  390 (649)
                      ++.++|++++++|++|.+++..  ++.+++.|+++++.+.....        .+...++++++|++.++|+++..+.+..
T Consensus       221 ~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~--------~~~~~i~~~~~t~~~~~P~~~~~l~~~~  292 (617)
T 3rg2_A          221 QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSAT--------LCFPLIEKHQVNVTALVPPAVSLWLQAL  292 (617)
T ss_dssp             TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHH--------HHHHHHHHTTCCEEEECHHHHHHHHHHH
T ss_pred             CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHH--------HHHHHHHHhCCcEEEcchHHHHHHHHhh
Confidence            8999999999999999998864  78899999999994432111        1222389999999999999999987753


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC
Q 006354          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG  470 (649)
Q Consensus       391 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~  470 (649)
                      ......                                             ...++||.+++||+++++++.+.|...++
T Consensus       293 ~~~~~~---------------------------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~  327 (617)
T 3rg2_A          293 IEGESR---------------------------------------------AQLASLKLLQVGGARLSATLAARIPAEIG  327 (617)
T ss_dssp             HTTCCT---------------------------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTC
T ss_pred             hccccc---------------------------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhC
Confidence            321100                                             01148999999999999999999999889


Q ss_pred             CccccccCcccccccccccCCCC-CCCCccCCCc-ccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccc
Q 006354          471 APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT  548 (649)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t  548 (649)
                      ++++|.||+||++..++...... ....++|+|+ ++++++|+| +++..   +++|+.|||+|+|+++++||+|+|+.|
T Consensus       328 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~p~G~~GEl~i~G~~v~~GY~~~p~~t  403 (617)
T 3rg2_A          328 CQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNP---LPQGEVGRLMTRGPYTFRGYYKSPQHN  403 (617)
T ss_dssp             SEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCB---CCTTCCEEEEEECSSSCSCCTTCHHHH
T ss_pred             CcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEEC-CCCCC---CCCCCceEEEecCccccchhcCChhhh
Confidence            99999999999986655432211 1236889997 788999999 55544   789999999999999999999999999


Q ss_pred             hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354          549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~  628 (649)
                      +++|.  .+  +||||||+|++++||+|+|+||+||+||++ |+||+|.|||++|.+||+|. +|+|++..++..++...
T Consensus       404 ~~~f~--~~--~~yrTGDl~~~~~dG~l~~~GR~dd~iki~-G~ri~~~eIE~~l~~~p~V~-~a~vv~~~~~~~~~~~~  477 (617)
T 3rg2_A          404 ASAFD--AN--GFYCSGDLISIDPEGYITVQGREKDQINRG-GEKIAAEEIENLLLRHPAVI-YAALVSMEDELMGEKSC  477 (617)
T ss_dssp             HHHBC--TT--SCEEEEEEEEECTTSCEEEEEECSSEEEET-TEEEEHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEE
T ss_pred             hhccC--CC--CceecCceEEEcCCceEEEEeecCCEEEEC-CEEeCHHHHHHHHHhCCCee-EEEEEeccCcccCeeEE
Confidence            99997  56  899999999999999999999999999985 99999999999999999999 99999988777665444


Q ss_pred             hh
Q 006354          629 IF  630 (649)
Q Consensus       629 ~~  630 (649)
                      ++
T Consensus       478 a~  479 (617)
T 3rg2_A          478 AY  479 (617)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2.6e-69  Score=638.85  Aligned_cols=460  Identities=22%  Similarity=0.289  Sum_probs=337.8

Q ss_pred             cCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCC
Q 006354           76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD  155 (649)
Q Consensus        76 ~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~g  155 (649)
                      .+.+...|++++|+++++++||++|+++.+          +|+           ++||+||.++++++|++|+++|+++|
T Consensus        55 ~~~p~~~tl~~~l~~~a~~~pd~~Al~~~~----------~~~-----------~~TY~eL~~~~~~lA~~L~~~Gv~~g  113 (979)
T 3tsy_A           55 IYIPNHLSLHDYIFQNISEFATKPCLINGP----------TGH-----------VYTYSDVHVISRQIAANFHKLGVNQN  113 (979)
T ss_dssp             CCCCTTSCHHHHHTTTGGGTTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCCHHHHHHHHHHhCCCCeEEEECC----------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCc
Confidence            445666899999999999999999998631          233           79999999999999999999999999


Q ss_pred             CEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCC
Q 006354          156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND  235 (649)
Q Consensus       156 d~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~  235 (649)
                      |+|+|+++|++++++++|||+++|+++||++|.++++++.+++++++++++|++.+..+.+..+.... .+ .++.+++.
T Consensus       114 d~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~  191 (979)
T 3tsy_A          114 DVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDN  191 (979)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCC
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCc
Confidence            99999999999999999999999999999999999999999999999999999998877666554332 22 34444332


Q ss_pred             CCCccCCCCCCCCCceEeehHHHHhcCCC--CCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC--
Q 006354          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKR--SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--  311 (649)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~--  311 (649)
                      ....        ......++.++......  ...+.....++|+|+|+|||||||.||||++||+++++.+.......  
T Consensus       192 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~  263 (979)
T 3tsy_A          192 ESVP--------IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENP  263 (979)
T ss_dssp             TTSC--------CCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSC
T ss_pred             cccc--------CCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcc
Confidence            1100        01123455555433222  11223456789999999999999999999999999999887765422  


Q ss_pred             -CCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHH
Q 006354          312 -PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV  386 (649)
Q Consensus       312 -~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l  386 (649)
                       ..+.++|++++++|++|++++.. ++.++..|+++++.+   +..+.+.           ++++++|++.++|+++..+
T Consensus       264 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l  332 (979)
T 3tsy_A          264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLEL-----------IQRCKVTVAPMVPPIVLAI  332 (979)
T ss_dssp             SSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHH
T ss_pred             cccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHH-----------HHHhCCeEEEcHHHHHHHH
Confidence             16788999999999999999865 677899999999944   3334444           9999999999999999988


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHH
Q 006354          387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN  466 (649)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~  466 (649)
                      .+....                                               .....++||.+++||+++++++.+++.
T Consensus       333 ~~~~~~-----------------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~  365 (979)
T 3tsy_A          333 AKSSET-----------------------------------------------EKYDLSSIRVVKSGAAPLGKELEDAVN  365 (979)
T ss_dssp             HHCGGG-----------------------------------------------GTSCCTTCCEEEESSCCCCSSHHHHHH
T ss_pred             HhCccc-----------------------------------------------cCCCccceEEEEEcCCCCCHHHHHHHH
Confidence            763210                                               011125899999999999999999999


Q ss_pred             hhc-CCccccccCcccccccccccC-----CCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcccccccc
Q 006354          467 ICM-GAPIGQAYGLTETCAGSTFSE-----WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG  540 (649)
Q Consensus       467 ~~~-~~~l~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~g  540 (649)
                      +.+ +++++|.||+||++.+++...     ......+++|+|++|++++|+|++++..   +++|+.|||+|+|++++.|
T Consensus       366 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~---~~~g~~GEl~i~g~~v~~G  442 (979)
T 3tsy_A          366 AKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDS---LSRNQPGEICIRGHQIMKG  442 (979)
T ss_dssp             HHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCB---CCTTCCEEEEEESTTSCSE
T ss_pred             HHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCC---CCCCCccEEEEECCCcccc
Confidence            887 899999999999987765432     2233568999999999999999766654   7899999999999999999


Q ss_pred             ccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCC
Q 006354          541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGP  620 (649)
Q Consensus       541 Y~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~  620 (649)
                      ||++|+.|++.|.  .+  |||+|||+|++++||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.++
T Consensus       443 Y~~~p~~t~~~f~--~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~-~~~Vv~~~~  516 (979)
T 3tsy_A          443 YLNNPAATAETID--KD--GWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDIT-DVAVVAMKE  516 (979)
T ss_dssp             ETTCHHHHHHHBC--TT--SCEEEEEEEEECTTSCEEEEEESCC------------------------------------
T ss_pred             ccCChhhhhhhcc--CC--CcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEEecc
Confidence            9999999999996  56  89999999999999999999999999998 599999999999999999999 999999999


Q ss_pred             CCcccchhhhhhh
Q 006354          621 MKLASSTKIFQSC  633 (649)
Q Consensus       621 ~~~~~~~~~~~~~  633 (649)
                      +..++.+.++...
T Consensus       517 ~~~g~~~~a~vv~  529 (979)
T 3tsy_A          517 EAAGEVPVAFVVK  529 (979)
T ss_dssp             -------------
T ss_pred             cCCCcEEEEEEEE
Confidence            8888777666554

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=4.7e-69  Score=595.67  Aligned_cols=438  Identities=20%  Similarity=0.253  Sum_probs=351.7

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      .+++.++|+++++ +|+++|+++            +++           .+||+||.++++++|++|+++|+++||+|+|
T Consensus        23 ~~~~~~~l~~~~~-~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   78 (529)
T 2v7b_A           23 FNFAAYLFRLNET-RAGKTAYID------------DTG-----------STTYGELEERARRFASALRTLGVHPEERILL   78 (529)
T ss_dssp             CCHHHHHHHHTGG-GTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             eeHHHHHHHhhhc-cCCceEEEe------------CCC-----------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3568999999999 999999985            333           6999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCc-cEEEEecCCCCCc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI-KNVIYFENDGSEK  239 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~-~~ii~~~~~~~~~  239 (649)
                      +++|++++++++|||+++|+++||+++.++++++.+++++++++++|++.+..+.+.......+.+ ..++.++..... 
T Consensus        79 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (529)
T 2v7b_A           79 VMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE-  157 (529)
T ss_dssp             ECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-----
T ss_pred             EcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc-
Confidence            999999999999999999999999999999999999999999999999998877776655444444 445444322110 


Q ss_pred             cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHH-HHHHHHHHhhCCCCCCCc
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI-VATAAAIKTLIPNPGRSD  318 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~~d  318 (649)
                               ......++++...... ........++|+++|+|||||||.||||++||+++ .+........+ ++.++|
T Consensus       158 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d  226 (529)
T 2v7b_A          158 ---------PRLAPLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAEND  226 (529)
T ss_dssp             -----------CCCBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTC
T ss_pred             ---------cccccchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCc
Confidence                     0112346666543221 22234567899999999999999999999999999 55554444445 788999


Q ss_pred             EEEEccChHHHHHHHH-HHHHHHhCceEEeC----CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHH
Q 006354          319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK  393 (649)
Q Consensus       319 ~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  393 (649)
                      ++++.+|++|++++.. ++.++..|+++++.    ++..+.+.           ++++++|+++++|+++..+.....  
T Consensus       227 ~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~--  293 (529)
T 2v7b_A          227 VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR-----------LVEHRPTVFYGVPTLYANMLVSPN--  293 (529)
T ss_dssp             EEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHH-----------HHHSCCSEEEECHHHHHHHHTCTT--
T ss_pred             EEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHH-----------HHHhCCEEEEecHHHHHHHHhCcc--
Confidence            9999999999999876 56789999999875    33333333           999999999999999988864210  


Q ss_pred             HHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcc
Q 006354          394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI  473 (649)
Q Consensus       394 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l  473 (649)
                         ...                                          ....++|.+++||+++++++.+.+.+.+|+++
T Consensus       294 ---~~~------------------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i  328 (529)
T 2v7b_A          294 ---LPA------------------------------------------RADVAIRICTSAGEALPREIGERFTAHFGCEI  328 (529)
T ss_dssp             ---CCC------------------------------------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCE
T ss_pred             ---ccc------------------------------------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCce
Confidence               000                                          00027999999999999999999999889999


Q ss_pred             ccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhc
Q 006354          474 GQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK  553 (649)
Q Consensus       474 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~  553 (649)
                      ++.||+||++.+++.........+++|+|+++++++|+| +++..   +++|+.|||+|+|++++.|||++|+.|++.| 
T Consensus       329 ~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-  403 (529)
T 2v7b_A          329 LDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHA---VPDGEVGDLYIKGPSAAVMYWNNREKSRATF-  403 (529)
T ss_dssp             EEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEEC-TTSCB---CCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-
T ss_pred             eeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEEC-CCCCC---CCCCCccEEEEecCCcccccCCChHHHHHhh-
Confidence            999999999766655544445668999999999999999 55554   7899999999999999999999999999999 


Q ss_pred             cCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcc
Q 006354          554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLA  624 (649)
Q Consensus       554 ~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~  624 (649)
                        .+  +||+|||+|++++||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++. ++..+
T Consensus       404 --~~--~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~~~vv~~-~~~~~  467 (529)
T 2v7b_A          404 --LG--EWIRSGDKYCRLPNGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVL-EAAVVGV-DHGGL  467 (529)
T ss_dssp             --ET--TEEEEEEEEEECTTSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEE-EEEEEEE-EETTE
T ss_pred             --hc--CCcccCceEEECCCccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEEe-cCCCc
Confidence              45  89999999999999999999999999998 599999999999999999999 9999998 54444

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=3.2e-69  Score=594.62  Aligned_cols=432  Identities=18%  Similarity=0.179  Sum_probs=353.6

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      +|+.++|+++|+++|+++|+++            .++           ++||+||.++++++|++|+++|+++||+|+|+
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~   57 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVW------------RDA-----------KITYKQLKEDSDALAHWISSEYPDDRSPIMVY   57 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred             CcHHHHHHHHHHHCCCceEEEe------------CCc-----------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            4799999999999999999986            333           69999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.....         ..+.              
T Consensus        58 ~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~---------~~~~--------------  114 (512)
T 3fce_A           58 GHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV---------TDLP--------------  114 (512)
T ss_dssp             ESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS---------SCCS--------------
T ss_pred             eCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc---------cccc--------------
Confidence            99999999999999999999999999999999999999999999999754211         0000              


Q ss_pred             CCCCCCCCceEee---hHHHHhcCC-CCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCC
Q 006354          242 GVSGGISNWTVSS---FSEVEKLGK-RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS  317 (649)
Q Consensus       242 ~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  317 (649)
                              .....   +.++..... ....+.....++|+++|+|||||||.||||++||+++++.+.+....+ ++.++
T Consensus       115 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~  185 (512)
T 3fce_A          115 --------VRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTG  185 (512)
T ss_dssp             --------SEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSS
T ss_pred             --------cceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCC
Confidence                    11112   122221111 122223456789999999999999999999999999999999998888 99999


Q ss_pred             cEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354          318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (649)
Q Consensus       318 d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~  397 (649)
                      |++++++|++|++++..++.+++.|+++++.+.....+.     ..++..++++++|++.++|+++..+......     
T Consensus       186 d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----  255 (512)
T 3fce_A          186 QVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARP-----KDLFASLEQSDIQVWTSTPSFAEMCLMEASF-----  255 (512)
T ss_dssp             CEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSH-----HHHHHHHHHHCCCEEEECHHHHHHHTTSTTC-----
T ss_pred             CEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCH-----HHHHHHHHHcCCcEEEecHHHHHHHHhhccc-----
Confidence            999999999999999888999999999999544221111     1222339999999999999999887542110     


Q ss_pred             cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccc
Q 006354          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA  476 (649)
Q Consensus       398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~  476 (649)
                                                                .....++||.+++||+++++++.+.+.+.+ ++++++.
T Consensus       256 ------------------------------------------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~  293 (512)
T 3fce_A          256 ------------------------------------------SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNT  293 (512)
T ss_dssp             ------------------------------------------STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred             ------------------------------------------cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeC
Confidence                                                      011125899999999999999999999888 8999999


Q ss_pred             cCcccccccccccCCC-----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhh
Q 006354          477 YGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV  551 (649)
Q Consensus       477 YG~TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~  551 (649)
                      ||+||+++.++.....     .....++|+|+++++++|+| +++..   +++|+.|||+|+|++++.|||++|+.|++.
T Consensus       294 YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~  369 (512)
T 3fce_A          294 YGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTI---APDGEKGEIVIVGPSVSVGYLGSPELTEKA  369 (512)
T ss_dssp             ECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCB---CCTTSCEEEEEESTTSCSCBTTCHHHHHHH
T ss_pred             cccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCC---CCCCCeEEEEEeccccChhhcCCchhhhhc
Confidence            9999998877654332     22457899999999999999 55554   789999999999999999999999999999


Q ss_pred             hccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354          552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       552 f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~  628 (649)
                      |.. .++.+||+|||+|++ +||+++|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.++...++.+.
T Consensus       370 f~~-~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~~~~~~~  442 (512)
T 3fce_A          370 FTM-IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVE-GAVIVPIKKGEKYDYLL  442 (512)
T ss_dssp             EEE-ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEE-EEEEEEEEETTEEEEEE
T ss_pred             ccc-CCCCEEEeCCceEEe-cCCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEEEecCCCceEEE
Confidence            842 133489999999999 79999999999999998 599999999999999999999 99999987766654443

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=4.1e-68  Score=585.41  Aligned_cols=435  Identities=18%  Similarity=0.181  Sum_probs=362.2

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHC-CCCCCCEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAAI  160 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~-Gv~~gd~V~i  160 (649)
                      +|+.++|+++|+++|+++|+.+            +++           ++||+||.++++++|++|++. |+++|++|++
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i   57 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRS------------QGQ-----------SLTYQELWEQSDRAAAAIQKRISGEKKSPILV   57 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEE
T ss_pred             CcHHHHHHHHHHHCCCCeEEEc------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEE
Confidence            4789999999999999999986            443           799999999999999999885 8899999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......      .                  
T Consensus        58 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~------------------  113 (511)
T 3e7w_A           58 YGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------A------------------  113 (511)
T ss_dssp             EESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------C------------------
T ss_pred             EecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------h------------------
Confidence            9999999999999999999999999999999999999999999999997543110      0                  


Q ss_pred             CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 006354          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  320 (649)
                           ........+++++...............++|+++|+|||||||.||||++||+++.+.+.+....+ ++.++|++
T Consensus       114 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~  187 (511)
T 3e7w_A          114 -----VGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIF  187 (511)
T ss_dssp             -----CCCSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEE
T ss_pred             -----cccccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceE
Confidence                 001234556666665443333333456789999999999999999999999999999999998888 89999999


Q ss_pred             EEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcch
Q 006354          321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL  400 (649)
Q Consensus       321 l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~  400 (649)
                      ++++|++|++++..++.++..|+++++.+.....+     +..++..++++++|++.++|++++.+......        
T Consensus       188 l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------  254 (511)
T 3e7w_A          188 LNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNK-----PKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF--------  254 (511)
T ss_dssp             EECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHS-----HHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC--------
T ss_pred             EEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcC-----HHHHHHHHHHcCCcEEEecHHHHHHHHhcccc--------
Confidence            99999999999988899999999999854321111     11122339999999999999999887652100        


Q ss_pred             hHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccCc
Q 006354          401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGL  479 (649)
Q Consensus       401 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~  479 (649)
                                                             .....+++|.+++||+++++++.+.+.+.+ ++++++.||+
T Consensus       255 ---------------------------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~  295 (511)
T 3e7w_A          255 ---------------------------------------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGP  295 (511)
T ss_dssp             ---------------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCC
T ss_pred             ---------------------------------------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCccc
Confidence                                                   001124899999999999999999999888 8999999999


Q ss_pred             ccccccccccCCC-----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhcc
Q 006354          480 TETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV  554 (649)
Q Consensus       480 TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~  554 (649)
                      ||++..++.....     .....++|+|+|+++++|+| +++..   +++|+.|||+|+|++++.|||++|+.|++.|..
T Consensus       296 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~  371 (511)
T 3e7w_A          296 TEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQP---LPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFS  371 (511)
T ss_dssp             GGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCB---CCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEE
T ss_pred             chheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCC---CCCCCceEEEEecCccChhhCCCcccchhhhcC
Confidence            9998877654321     23457899999999999999 55544   789999999999999999999999999999963


Q ss_pred             CCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354          555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI  629 (649)
Q Consensus       555 ~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~  629 (649)
                      . ++.+||+|||+|++ +||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.+
T Consensus       372 ~-~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~~~~~~~a  442 (511)
T 3e7w_A          372 H-EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVR-SAVVIPYQPNGTVEYLIA  442 (511)
T ss_dssp             S-SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEE-EEEEEEECSSSSCCEEEE
T ss_pred             C-CCCEEEeCCCeEEc-cCCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcc-eEEEEEEcCCCCceEEEE
Confidence            2 32348999999999 59999999999999998 599999999999999999999 999999887776654433

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=4.8e-68  Score=586.65  Aligned_cols=428  Identities=19%  Similarity=0.197  Sum_probs=348.1

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|+++++++|+++|+.+            .++           ++||+||.++++++|++|+++|+++||+|+|
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i   59 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDC------------LGE-----------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLV   59 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEE
T ss_pred             HHHHHHHHHHHHHHCCCCcceec------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            36899999999999999999986            443           6999999999999999999999999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~  240 (649)
                      +++|++++++++|||+++|+++||++|.++++++.+++++++++++|++.+....+.                       
T Consensus        60 ~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~-----------------------  116 (521)
T 3l8c_A           60 FGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE-----------------------  116 (521)
T ss_dssp             EECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT-----------------------
T ss_pred             EeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc-----------------------
Confidence            999999999999999999999999999999999999999999999999876422110                       


Q ss_pred             CCCCCCCCCceEeehHHHHhcC--CCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhh--CCCCCC
Q 006354          241 SGVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL--IPNPGR  316 (649)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~  316 (649)
                              ......+.++....  ...........++|+++|+|||||||.||||++||+++++.+.+....  + .+.+
T Consensus       117 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~  187 (521)
T 3l8c_A          117 --------GISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-DVPK  187 (521)
T ss_dssp             --------TSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-CCCS
T ss_pred             --------cCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-CCCC
Confidence                    12334444433221  111222345678999999999999999999999999999988877665  5 7788


Q ss_pred             CcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHh
Q 006354          317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE  396 (649)
Q Consensus       317 ~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  396 (649)
                      ++++++..|++|..++..++.++..|+++++.+.....+.     ..+...+.++++|++.++|+++..+......    
T Consensus       188 ~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----  258 (521)
T 3l8c_A          188 QPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADF-----KQLFTTIAQLPVGIWTSTPSFADMAMLSDDF----  258 (521)
T ss_dssp             SCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCH-----HHHHHHHHHSCCSEEEECHHHHHHHHTSTTC----
T ss_pred             CCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCH-----HHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc----
Confidence            9999999999999998888889999999998544322221     1223338999999999999999877542100    


Q ss_pred             hcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCcccc
Q 006354          397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ  475 (649)
Q Consensus       397 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~  475 (649)
                                                                 .....++||.+++||+++++++.+.+.+.+ ++++++
T Consensus       259 -------------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~  295 (521)
T 3l8c_A          259 -------------------------------------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIIN  295 (521)
T ss_dssp             -------------------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred             -------------------------------------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEe
Confidence                                                       001124899999999999999999888887 899999


Q ss_pred             ccCcccccccccccCCC-----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchh
Q 006354          476 AYGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE  550 (649)
Q Consensus       476 ~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~  550 (649)
                      .||+||++++++.....     ....+++|+|+|+++++|+| +++..   +++|+.|||+|+|++++.|||++|+.|++
T Consensus       296 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~  371 (521)
T 3l8c_A          296 AYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKE---LSSGEQGEIIVTGPAVSKGYLNNPEKTAE  371 (521)
T ss_dssp             EECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCB---CCTTCCEEEEEESTTSCSCBTTCHHHHHH
T ss_pred             CcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCC---CCCCCceEEEecccccChhhcCCchHhhc
Confidence            99999998877654322     23457899999999999999 55554   78999999999999999999999999999


Q ss_pred             hhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354          551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK  622 (649)
Q Consensus       551 ~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~  622 (649)
                      .|.. .++.+||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++..+..
T Consensus       372 ~f~~-~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~  440 (521)
T 3l8c_A          372 AFFT-FKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVA-SAVAVPRYNKE  440 (521)
T ss_dssp             HEEE-ETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEE-EEEEECCCSSS
T ss_pred             cCcC-CCCceeeeCCCEEEEeCCCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcc-eEEEEEeecCC
Confidence            9852 133489999999999999999999999999998 599999999999999999999 99999987544

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=3.8e-68  Score=584.12  Aligned_cols=427  Identities=24%  Similarity=0.318  Sum_probs=346.5

Q ss_pred             CCCHHHHHHHHHHhCCC-CcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 006354           81 ASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA  159 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~-~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~  159 (649)
                      ..|+.++|+++++++|+ ++|+++            +++           .+||+||.++++++|++|.     .|++|+
T Consensus        21 ~~tl~~~l~~~a~~~p~d~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~-----~~~~V~   72 (505)
T 3nyq_A           21 MSSLFPALSPAPTGAPADRPALRF------------GER-----------SLTYAELAAAAGATAGRIG-----GAGRVA   72 (505)
T ss_dssp             ---CCTTTSSCCCSGGGGSEEEEE------------TTE-----------EEEHHHHHHHHHHHHTTCC--------CEE
T ss_pred             cchhHHHHHHHHHhCCCCCeEEEE------------CCe-----------eeeHHHHHHHHHHHHhhcc-----CCCEEE
Confidence            46888899999999987 999986            333           6999999999999999874     388999


Q ss_pred             EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCc
Q 006354          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK  239 (649)
Q Consensus       160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~  239 (649)
                      |+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+...     ......+..+. ++.     
T Consensus        73 i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~-----  141 (505)
T 3nyq_A           73 VWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVD-VDV-----  141 (505)
T ss_dssp             EECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEE-CCT-----
T ss_pred             EEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccc-ccc-----
Confidence            9999999999999999999999999999999999999999999999999865210     01111111111 100     


Q ss_pred             cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 006354          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (649)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  319 (649)
                                            ......+.....++|+|+|+|||||||.||||++||+++.+.+.+....+ ++.++|+
T Consensus       142 ----------------------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~  198 (505)
T 3nyq_A          142 ----------------------RARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDV  198 (505)
T ss_dssp             ----------------------TCCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCE
T ss_pred             ----------------------ccccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcE
Confidence                                  00111223455789999999999999999999999999999999998888 8999999


Q ss_pred             EEEccChHHHHHHHH-HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHH
Q 006354          320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE  395 (649)
Q Consensus       320 ~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  395 (649)
                      +++.+|++|..++.. ++.++..|+++++.+   +..+.+.           + ++++|+++++|+++..+.+.......
T Consensus       199 ~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i-~~~~t~~~~~P~~~~~l~~~~~~~~~  266 (505)
T 3nyq_A          199 LVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARE-----------L-NDGATMLFGVPTMYHRIAETLPADPE  266 (505)
T ss_dssp             EEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHH-----------H-TTTCCEEEECHHHHHHHHHHGGGCHH
T ss_pred             EEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHH-----------H-hhCCeEEEehHHHHHHHHHhhhcCch
Confidence            999999999999865 788999999999843   3333333           6 67999999999999998764321100


Q ss_pred             hhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcccc
Q 006354          396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ  475 (649)
Q Consensus       396 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~  475 (649)
                      .                                            ....+++|.+++||+++++++.+.+...++++++|
T Consensus       267 ~--------------------------------------------~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~  302 (505)
T 3nyq_A          267 L--------------------------------------------AKALAGARLLVSGSAALPVHDHERIAAATGRRVIE  302 (505)
T ss_dssp             H--------------------------------------------HHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEE
T ss_pred             h--------------------------------------------hcccccceEEEECCCCCCHHHHHHHHHhcCCeeec
Confidence            0                                            00012789999999999999999999989999999


Q ss_pred             ccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccC
Q 006354          476 AYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD  555 (649)
Q Consensus       476 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~  555 (649)
                      .||+||++..++.........+++|+|++|++++|+| +++.....++.|+.|||+|+|++++.|||++|+.|+++|.  
T Consensus       303 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~--  379 (505)
T 3nyq_A          303 RYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFT--  379 (505)
T ss_dssp             EEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBC--
T ss_pred             ccchhhcccccccCCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhc--
Confidence            9999999987777666666778999999999999999 5565544345589999999999999999999999999997  


Q ss_pred             CCcccceeeCcEEEEccCCeEEEEecC-CCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhh
Q 006354          556 ERGMCWFYTGDIGQVYPDGCLEIIDRK-KDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQS  632 (649)
Q Consensus       556 ~~~~~w~~TGDlg~~~~dG~l~i~GR~-dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~  632 (649)
                      .+  |||+|||+|++++||+|+|+||+ ||+||++ |++|+|.|||++|.+||+|. +|+|++.+++..++.+.++..
T Consensus       380 ~~--g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~-G~~v~~~eIE~~l~~~p~V~-~a~Vv~~~~~~~g~~l~a~vv  453 (505)
T 3nyq_A          380 ED--GFFRTGDMAVRDPDGYVRIVGRKATDLIKSG-GYKIGAGEIENALLEHPEVR-EAAVTGEPDPDLGERIVAWIV  453 (505)
T ss_dssp             TT--SCEEEEEEEEECTTSCEEEEEESSCCCEEET-TEEECHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEEEEEE
T ss_pred             CC--CCCccCCeEEECCCccEEEeCCccCceEEeC-CEEECHHHHHHHHHHCcCcc-EEEEEeeECCCCCcEEEEEEE
Confidence            56  89999999999999999999997 5999985 99999999999999999999 999999988877765554443

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.5e-67  Score=579.91  Aligned_cols=436  Identities=20%  Similarity=0.259  Sum_probs=345.0

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 006354           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (649)
Q Consensus        83 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (649)
                      |+.++|+++|+++|+++|+++            +++           ++||+||.++++++|++|+++   +||+|+|++
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~   55 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITD------------GQE-----------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYI   55 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred             CHHHHHHHHHHhcCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEc
Confidence            667899999999999999985            333           699999999999999999987   899999999


Q ss_pred             cCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCC
Q 006354          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG  242 (649)
Q Consensus       163 ~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~  242 (649)
                      +|++++++++|||+++|++++|+++.++++++.+++++++++++|++.+.......... ...+..+.........    
T Consensus        56 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----  130 (501)
T 3ipl_A           56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNGL----  130 (501)
T ss_dssp             CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC-----------------
T ss_pred             CCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeecccccc----
Confidence            99999999999999999999999999999999999999999999998765443221110 1111111110000000    


Q ss_pred             CCCCCCCceEe-ehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 006354          243 VSGGISNWTVS-SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (649)
Q Consensus       243 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  321 (649)
                       ......+... ..+.................++|+|+|+|||||||.||||++||+++++.+......+ ++.++|+++
T Consensus       131 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l  208 (501)
T 3ipl_A          131 -LDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWL  208 (501)
T ss_dssp             --------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEE
T ss_pred             -cccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEE
Confidence             0000000000 0011111011011112345789999999999999999999999999999999998888 999999999


Q ss_pred             EccChHHHHHHHHHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhc
Q 006354          322 AYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (649)
Q Consensus       322 ~~~pl~h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~  398 (649)
                      +.+|++|++++..++.+++.|+++++.+   +..+.+.           ++++++|+++++|++++.+.+....      
T Consensus       209 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~------  271 (501)
T 3ipl_A          209 SVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTM-----------IKNERITHISLVPQTLNWLMQQGLH------  271 (501)
T ss_dssp             ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHHHHTCC------
T ss_pred             EeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHcCCcEEEchHHHHHHHHhcCCC------
Confidence            9999999999988889999999999944   4444444           9999999999999999988763110      


Q ss_pred             chhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccC
Q 006354          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (649)
Q Consensus       399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (649)
                                                                  ...+||.+++||+++++++.+.+.+ +++++++.||
T Consensus       272 --------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG  306 (501)
T 3ipl_A          272 --------------------------------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFG  306 (501)
T ss_dssp             --------------------------------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEE
T ss_pred             --------------------------------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEecccc
Confidence                                                        0026999999999999999999887 4999999999


Q ss_pred             cccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC
Q 006354          479 LTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE  556 (649)
Q Consensus       479 ~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~  556 (649)
                      +||+++.++.....  ....+++|+|+++++++|+|++         +++.|||+|+|++++.||+++|+.|.+ |   .
T Consensus       307 ~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~---------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~---~  373 (501)
T 3ipl_A          307 MTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN---------KEGHGELMIKGANVMNGYLYPTDLTGT-F---E  373 (501)
T ss_dssp             EGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC---------SSCCEEEEEESTTSCSCCSBSTTCCCS-E---E
T ss_pred             ccccccceeecCccccccCCCCCCCCCCCcEEEEecCC---------CCCccEEEEeccchhhhhCcChhhcch-h---c
Confidence            99998765443322  2355789999999999999943         356799999999999999999999988 6   5


Q ss_pred             CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhh
Q 006354          557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIF  630 (649)
Q Consensus       557 ~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~  630 (649)
                      +  |||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.++
T Consensus       374 ~--g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~-~~~vv~~~~~~~g~~~~a~  443 (501)
T 3ipl_A          374 N--GYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGIS-DAVCVGHPDDTWGQVPKLY  443 (501)
T ss_dssp             T--TEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEEEE
T ss_pred             C--CceecCCEEEEcCCCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCcc-EEEEEEEecccCCceEEEE
Confidence            6  89999999999999999999999999997 599999999999999999999 9999999888876554433

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.9e-66  Score=579.04  Aligned_cols=447  Identities=20%  Similarity=0.220  Sum_probs=314.2

Q ss_pred             CCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCC
Q 006354           77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT  156 (649)
Q Consensus        77 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd  156 (649)
                      .+....|+.++|+++|+++||++|+.+.+-.        .+.     ..+..+.+||+||.++++++|++|++.|+ +||
T Consensus        15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~--------~~~-----~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd   80 (562)
T 3ite_A           15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGF--------LGS-----QKIVTEDWTYKKLNETANQVANLIIHASL-HGR   80 (562)
T ss_dssp             ---CCCCTTHHHHHHHHHCTTSEEEEEEECC------------------CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSC
T ss_pred             eecccCCHHHHHHHHHHHCCCchhhhccccc--------ccc-----cccccCCCCHHHHHHHHHHHHHHHHhcCC-CCC
Confidence            3455579999999999999999999875310        000     01123579999999999999999999999 799


Q ss_pred             EEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCC
Q 006354          157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG  236 (649)
Q Consensus       157 ~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~  236 (649)
                      +|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+....+     ..+....++...   
T Consensus        81 ~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~---  152 (562)
T 3ite_A           81 AIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTK---  152 (562)
T ss_dssp             EEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETT---
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeeccc---
Confidence            999999999999999999999999999999999999999999999999999987654321     011111111100   


Q ss_pred             CCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC-----
Q 006354          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-----  311 (649)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~-----  311 (649)
                                     ...+.+....... ........++++|+|+|||||||.||||++||+++.+.+......+     
T Consensus       153 ---------------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  216 (562)
T 3ite_A          153 ---------------NQSFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAP  216 (562)
T ss_dssp             ---------------CHHHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCG
T ss_pred             ---------------chhhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccc
Confidence                           0112222222211 1122345678899999999999999999999999998887655431     


Q ss_pred             --CCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          312 --PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       312 --~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                        ..+...+++++..|++|+.++..++.++..|+++++.......+       .+...++++++|++.++|++++.+...
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-------~~~~~i~~~~~t~~~~~P~~l~~~~~~  289 (562)
T 3ite_A          217 KSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLD-------DLPRTFRELGVTHAGIVPSLLDQTGLV  289 (562)
T ss_dssp             GGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHH-------SHHHHHHHTTCCEEEECHHHHHHHTCC
T ss_pred             hhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHH-------HHHHHHHHcCCCEEEcCHHHHhhcccC
Confidence              14778899999999999999888899999999999855432211       123338999999999999988755221


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      .                                                   ...++||.+++||+++++++.+.|++.+
T Consensus       290 ~---------------------------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~  318 (562)
T 3ite_A          290 P---------------------------------------------------EDAPHLVYLGVGGEKMTPRTQQIWSSSD  318 (562)
T ss_dssp             G---------------------------------------------------GGSTTCCEEEEESSCCCHHHHHHHTTCS
T ss_pred             c---------------------------------------------------cccCceEEEEEecCCCCHHHHHHHhhCC
Confidence            0                                                   0124899999999999999999999988


Q ss_pred             CCccccccCcccccccccccCC-CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccc
Q 006354          470 GAPIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT  548 (649)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t  548 (649)
                      ++++++.||+||++..++.... .....+++|+|+++++++|+|++++..   +++|+.|||+|+|++++.|||++|+.|
T Consensus       319 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~~p~~t  395 (562)
T 3ite_A          319 RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEH---VKKGMAGELVIEGSLVANGYLNRPDAK  395 (562)
T ss_dssp             SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCB---CCTTSCEEEEEESTTSCCEESSCTTCC
T ss_pred             CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCC---CCCCCceEEEEeccccchhhCCCcccc
Confidence            9999999999999887765543 334567899999999999999655543   789999999999999999999999999


Q ss_pred             hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccC-cccccceEEEecCCCCcccch
Q 006354          549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVL-PLLFHHIRLWRNGPMKLASST  627 (649)
Q Consensus       549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~-p~V~~~~~V~g~~~~~~~~~~  627 (649)
                      +..+   .+|.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+| |.|. +++|++..++..++..
T Consensus       396 ~~~~---~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~-~~~v~~~~~~~~~~~~  470 (562)
T 3ite_A          396 GFCD---INGRKMYRTGDIVRMDADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDI-DVVTLLLNHPGTSKQF  470 (562)
T ss_dssp             SEEE---ETTEEEEEEEEEEEECTTSCEEEEEEC----------------------------------------------
T ss_pred             cccc---CCCCEEEecCCEEEEcCCCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCce-eEEEEEecCCCCcceE
Confidence            8776   554469999999999999999999999999998 59999999999999998 7788 9999998887766543

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=6.7e-67  Score=586.66  Aligned_cols=446  Identities=19%  Similarity=0.208  Sum_probs=353.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 006354           80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA  159 (649)
Q Consensus        80 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~  159 (649)
                      ...|+.++|+++|+++||++|+++.+          +         +..+++||+||.++++++|++|+++|+++||+|+
T Consensus         9 ~~~tl~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~   69 (590)
T 3kxw_A            9 QCQSLVDVVRLRALHSPNKKSCTFLN----------K---------ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVL   69 (590)
T ss_dssp             TCSSHHHHHHHHHHHCTTSEEEEEEE----------T---------TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             CcccHHHHHHHHHHhCCCCeEEEEEc----------C---------CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            34799999999999999999998753          1         1124799999999999999999999999999999


Q ss_pred             EEccCCHHHHHHHHHHHhcCCEEEEecCCC---CHHHHHHHHhhcCceEEEECchhHHHHHHhh-ccCCCccEEEEecCC
Q 006354          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSL---GEDALIHSLNETQVTTLICDSKQLKKLSAVS-SSLKTIKNVIYFEND  235 (649)
Q Consensus       160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~ii~~~~~  235 (649)
                      |+++|++++++++|||+++|+++||++|.+   +.+++.++++++++++++++.+....+.... ...+....+      
T Consensus        70 i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~------  143 (590)
T 3kxw_A           70 LLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI------  143 (590)
T ss_dssp             EECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE------
T ss_pred             EEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc------
Confidence            999999999999999999999999999988   4578999999999999999988766554322 111111111      


Q ss_pred             CCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCC
Q 006354          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG  315 (649)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~  315 (649)
                                     .....+++.... ..........++|+|+|+|||||||.||||++||+++++.+.+....+ ++.
T Consensus       144 ---------------~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~  206 (590)
T 3kxw_A          144 ---------------PAIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMN  206 (590)
T ss_dssp             ---------------EEEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCC
T ss_pred             ---------------ceeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCC
Confidence                           112222211111 111223456789999999999999999999999999999999999888 999


Q ss_pred             CCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHH
Q 006354          316 RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (649)
Q Consensus       316 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  394 (649)
                      ++|++++++|++|++++.. ++.+++.|+++++.++..+...    +..++..++++++|++.++|.++..+.+.+....
T Consensus       207 ~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~  282 (590)
T 3kxw_A          207 DETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQN----PLSWLKHITKYKATISGSPNFAYDYCVKRIREEK  282 (590)
T ss_dssp             TTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHC----THHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG
T ss_pred             CcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHC----HHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh
Confidence            9999999999999999987 7889999999999543322111    1122233999999999999999998876421110


Q ss_pred             HhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC----
Q 006354          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG----  470 (649)
Q Consensus       395 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~----  470 (649)
                      .                                            .....++||.+++||+++++++.+.|.+.++    
T Consensus       283 ~--------------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~  318 (590)
T 3kxw_A          283 K--------------------------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGF  318 (590)
T ss_dssp             G--------------------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTC
T ss_pred             c--------------------------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCC
Confidence            0                                            0112258999999999999999999988763    


Q ss_pred             --CccccccCcccccccccccCCC---------------------------CCCCCccCCCcccceEEEEecCCCCcccC
Q 006354          471 --APIGQAYGLTETCAGSTFSEWD---------------------------DPSVGRVGPPVPCCYIKLVSWDEGGYKTS  521 (649)
Q Consensus       471 --~~l~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~vG~p~p~~~v~i~d~~~~~~~~~  521 (649)
                        +++++.||+||++++++.....                           ....+++|+|+++  ++|+|++++..   
T Consensus       319 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~---  393 (590)
T 3kxw_A          319 RKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIP---  393 (590)
T ss_dssp             CGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCB---
T ss_pred             CccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcC---
Confidence              4799999999999877654321                           1123789999998  88899655543   


Q ss_pred             CCCCCccEEEEccccccccccCCCccchhhhccC----CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCC
Q 006354          522 DKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG  597 (649)
Q Consensus       522 ~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~----~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~  597 (649)
                      +++|+.|||+|+|++++.|||++|+.|+++|..+    .+|.+||+|||+|++| ||.|+|+||+||+||+ +|++|+|.
T Consensus       394 ~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~  471 (590)
T 3kxw_A          394 CDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQ  471 (590)
T ss_dssp             CCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHH
T ss_pred             CCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHH
Confidence            7899999999999999999999999999999632    1233599999999999 9999999999999998 59999999


Q ss_pred             hhhhHh-ccCccccc-ceEEEecCCCC
Q 006354          598 KIPSTT-TVLPLLFH-HIRLWRNGPMK  622 (649)
Q Consensus       598 eIE~~l-~~~p~V~~-~~~V~g~~~~~  622 (649)
                      |||++| ..+|.|.. +|+|++.+++.
T Consensus       472 eIE~~l~~~~~~v~~~~~~v~~~~~~~  498 (590)
T 3kxw_A          472 DIEFSLMHSPLHHVLGKCAAFVIQEEH  498 (590)
T ss_dssp             HHHHHHHHSGGGGGEEEEEEEEEEETT
T ss_pred             HHHHHHHhcCccccCccEEEEEecCCC
Confidence            999999 88999872 48888876655

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=3.4e-61  Score=526.72  Aligned_cols=408  Identities=18%  Similarity=0.205  Sum_probs=312.5

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (649)
Q Consensus        81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (649)
                      ..|+.++|+++++++||++|+++.+..        ++.      .+..+++||+||.++++++|++|+++|+ +||+|+|
T Consensus        23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i   87 (480)
T 3t5a_A           23 VRSLPAALRACARLQPHDPAFTFMDYE--------QDW------DGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVI   87 (480)
T ss_dssp             -CCHHHHHHHHHHHSTTSEEEEEEETT--------TCT------TCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEE
T ss_pred             cccHHHHHHHHHHhCCCCceEEEeccc--------CCC------CCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEE
Confidence            379999999999999999999986311        011      1233579999999999999999999996 9999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecC---CCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCc--cEEEEecCC
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYS---SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIYFEND  235 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~--~~ii~~~~~  235 (649)
                      +++|++++++++|||+++|+++||+++   .++.+++.+++++++++++|++.+....+.......+..  ..++.++. 
T Consensus        88 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  166 (480)
T 3t5a_A           88 SAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL-  166 (480)
T ss_dssp             ECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG-
T ss_pred             EcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc-
Confidence            999999999999999999999999999   788999999999999999999999887776654333221  12222221 


Q ss_pred             CCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCC
Q 006354          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG  315 (649)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~  315 (649)
                                            +.. ............++++|+|+|||||||.||||++||+++++.+.+....+ .+.
T Consensus       167 ----------------------~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~  222 (480)
T 3t5a_A          167 ----------------------LDL-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FAD  222 (480)
T ss_dssp             ----------------------SCT-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTT
T ss_pred             ----------------------ccc-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-ccc
Confidence                                  111 11111223456788999999999999999999999999999998888776 666


Q ss_pred             C------CcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354          316 R------SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (649)
Q Consensus       316 ~------~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~  388 (649)
                      .      +|++++++|++|++++.. ++.+++.|+++++.++..+...    +..+...++++++| +.++|+++..+..
T Consensus       223 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~~t-~~~~p~~~~~l~~  297 (480)
T 3t5a_A          223 TDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQR----PARWMHLMASDFHA-FSAAPNFAFELAA  297 (480)
T ss_dssp             TTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHC----THHHHHHTTSSSEE-EEEECHHHHHHHH
T ss_pred             cccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHC----HHHHHHHHHhhcee-EeeChHHHHHHHH
Confidence            6      899999999999999765 6889999999999544322111    12223339999999 8899999888765


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (649)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~  468 (649)
                      .......                                           ......++||.+++||+++++++.+.|.+.
T Consensus       298 ~~~~~~~-------------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~  334 (480)
T 3t5a_A          298 RRTTDDD-------------------------------------------MAGRDLGNILTILSGSERVQAATIKRFADR  334 (480)
T ss_dssp             HHCCTGG-------------------------------------------GTTCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred             hhcCccc-------------------------------------------ccccchhhhheeeecCCcCCHHHHHHHHHH
Confidence            3211000                                           011123589999999999999999999988


Q ss_pred             cC------CccccccCcccccccccccCCCC-------------------------CCCCccCCCcccceEEEEecCCCC
Q 006354          469 MG------APIGQAYGLTETCAGSTFSEWDD-------------------------PSVGRVGPPVPCCYIKLVSWDEGG  517 (649)
Q Consensus       469 ~~------~~l~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~vG~p~p~~~v~i~d~~~~~  517 (649)
                      ++      +.+++.||+||++.+++......                         ...+++|+|++ ++++|+|.+++.
T Consensus       335 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~  413 (480)
T 3t5a_A          335 FARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCI  413 (480)
T ss_dssp             SGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTE
T ss_pred             HhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCc
Confidence            73      47999999999998877654322                         12368999999 999999965554


Q ss_pred             cccCCCCCCccEEEEccccccccccCCCccchhhhcc-------CCCcccceeeCcEEEEccCCeEEEEec
Q 006354          518 YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV-------DERGMCWFYTGDIGQVYPDGCLEIIDR  581 (649)
Q Consensus       518 ~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~-------~~~~~~w~~TGDlg~~~~dG~l~i~GR  581 (649)
                      .   +++|+.|||+|+|++++.|||++|++|+++|..       ..++.|||||||+|+++ ||+|+|+||
T Consensus       414 ~---~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          414 E---CPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             E---CCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             C---CCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            4   789999999999999999999999999999952       11134799999999997 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=1.6e-44  Score=377.79  Aligned_cols=258  Identities=19%  Similarity=0.214  Sum_probs=218.6

Q ss_pred             CCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCc-cc
Q 006354          274 QNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST-LT  352 (649)
Q Consensus       274 ~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~-~~  352 (649)
                      .+|+|||+|||||||.||||++||+++++.+.+....+ +++++|++++++|++|++++..++.++..|+++++.++ ..
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~  114 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN  114 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc
Confidence            47899999999999999999999999999999999998 99999999999999999999988899999999988443 23


Q ss_pred             ccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHH
Q 006354          353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWD  432 (649)
Q Consensus       353 l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  432 (649)
                      ..+.           ++++++|++.++|++++.+++......                                      
T Consensus       115 ~~~~-----------i~~~~~t~~~~~P~~l~~ll~~~~~~~--------------------------------------  145 (358)
T 4gs5_A          115 PLAG-----------LDHADFDFVAMVPMQLQSILENSATSG--------------------------------------  145 (358)
T ss_dssp             TTTT-----------CSSCCCSEEEECHHHHHHHHHCTTTGG--------------------------------------
T ss_pred             HHHH-----------HHHhCCeEEEcChHHHHHhhccccccc--------------------------------------
Confidence            3333           899999999999999998876321100                                      


Q ss_pred             HHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEe
Q 006354          433 AIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVS  512 (649)
Q Consensus       433 ~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d  512 (649)
                                ..++||.+++||+++++++.+++++ +++++++.||+||++..++.........+.+|.+.||+++.+. 
T Consensus       146 ----------~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~-  213 (358)
T 4gs5_A          146 ----------QVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVD-  213 (358)
T ss_dssp             ----------GGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEEC-
T ss_pred             ----------cCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEec-
Confidence                      1148999999999999999999987 4899999999999999888887777778899999999988763 


Q ss_pred             cCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCce
Q 006354          513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGE  592 (649)
Q Consensus       513 ~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~  592 (649)
                                   ..|||+++|+..                  .+  |||+|||+|++|+|| ++++||+||+||+ +|+
T Consensus       214 -------------~~Gel~~~g~~~------------------~~--g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~  258 (358)
T 4gs5_A          214 -------------ERGCLHISGAVT------------------NG--QTVQTNDLVEIHGNA-FQWIGRADNVINS-GGV  258 (358)
T ss_dssp             -------------TTSEEEEESGGG------------------TT--CCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTE
T ss_pred             -------------CcCceEEecccc------------------cC--cceecCCccccccCc-eEEcccccCeEEE-CCE
Confidence                         358999988532                  34  899999999999888 6778999999998 599


Q ss_pred             eeeCChhhhHh---ccCcccccceEEE-ecCCCCcccchhh
Q 006354          593 YISLGKIPSTT---TVLPLLFHHIRLW-RNGPMKLASSTKI  629 (649)
Q Consensus       593 ~v~~~eIE~~l---~~~p~V~~~~~V~-g~~~~~~~~~~~~  629 (649)
                      +|+|.|||++|   .+||.|. +|+|+ +.+++..|+.+.+
T Consensus       259 ~v~p~eIE~~l~~~~~~p~V~-~a~vv~~~~d~~~ge~~~a  298 (358)
T 4gs5_A          259 KIVLDQIDQRIAAVFHHLNIG-NAFFCWWEPDAKLGQKLVL  298 (358)
T ss_dssp             EEEHHHHHHHHHHHHHHHTCC-CCEEEEEEEETTTEEEEEE
T ss_pred             EECHHHHHHHHHHhccCCCcc-EEEEEEecCCccCCEEEEE
Confidence            99999999877   4689999 88776 6667776655443

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=4.7e-42  Score=370.10  Aligned_cols=281  Identities=15%  Similarity=0.149  Sum_probs=224.0

Q ss_pred             CCCC-CCeEEEEeecCCCCCcceEEechHHHHHHHHHHH---hhCCCCCCCcEEEEccChHHHHHH-HHHHHHHHhCceE
Q 006354          271 LPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK---TLIPNPGRSDVYLAYLPLAHVLEL-AAESIMLCAGCAI  345 (649)
Q Consensus       271 ~~~~-~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~~~-~~~~~~l~~G~~l  345 (649)
                      ...+ +++++|+|||||||.||||++||+++.+.+....   ..+ ++.++|++++++|++|..+. ...+.++..|+++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~  159 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLT  159 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEE
Confidence            4455 8999999999999999999999999987766653   345 78899999999998765554 4567789999999


Q ss_pred             EeCCc---ccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccc
Q 006354          346 GYGST---LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG  422 (649)
Q Consensus       346 ~~~~~---~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  422 (649)
                      ++.++   ..+.+.           ++++++|+++++|+++..|.+.........                         
T Consensus       160 ~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-------------------------  203 (436)
T 3qov_A          160 VPAAAGNSKRQIKF-----------ISDFKTTALHAIPSYAIRLAEVFQEEGIDP-------------------------  203 (436)
T ss_dssp             ECCCSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHHHHHHTTCCT-------------------------
T ss_pred             EeCCCCCHHHHHHH-----------HHHHCCCEEEECHHHHHHHHHHHHHcCCCc-------------------------
Confidence            88433   334444           999999999999999999987543211000                         


Q ss_pred             cccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCCCCCCccCCC
Q 006354          423 AWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP  502 (649)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p  502 (649)
                                          ..++||.+++||+++++++.+++++.+|+++++.||+||+++.+......  ....+|.|
T Consensus       204 --------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~~  261 (436)
T 3qov_A          204 --------------------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHFW  261 (436)
T ss_dssp             --------------------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEEC
T ss_pred             --------------------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEEc
Confidence                                01489999999999999999999999999999999999996542222211  11236677


Q ss_pred             cccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCC------e-
Q 006354          503 VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG------C-  575 (649)
Q Consensus       503 ~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG------~-  575 (649)
                      .++++++|+|++++..   +++|+.|||+|+|.            |++.|   ++  +||+|||+|++++||      + 
T Consensus       262 ~~~~~v~i~d~~~g~~---~~~g~~Gel~v~~~------------~~~~~---~~--~~y~TGDl~~~~~~gc~cG~~~~  321 (436)
T 3qov_A          262 EDCYLVEIIDPETGEP---VPEGEIGELVLTTL------------DREMM---PL--IRYRTRDLTRILPGKCPCGRTHL  321 (436)
T ss_dssp             TTTEEEEEECTTTCSB---CSTTCCEEEEEEES------------SCCSS---CC--CSEEEEEEECEECSCCTTCCCSC
T ss_pred             cCceEEEEEECCCCCC---CCCCCceEEEEecc------------CcCCc---eE--EEEEcCCEEEEcCCCCCCCCCcc
Confidence            7899999999777755   78999999999983            34445   55  899999999999998      5 


Q ss_pred             --EEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhh
Q 006354          576 --LEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQS  632 (649)
Q Consensus       576 --l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~  632 (649)
                        ++|+||.||+||+ +|++|+|.|||++|.+||+|. +++|++..++..++.+.++..
T Consensus       322 ~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~-~~~vv~~~~~~~~~~l~a~v~  378 (436)
T 3qov_A          322 RIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELG-SNYLITLETVNNQDEMIVEVE  378 (436)
T ss_dssp             EECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEE-EEEEEEEEEETTEEEEEEEEE
T ss_pred             ccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcC-CcEEEEEEcCCCCcEEEEEEE
Confidence              6999999999998 599999999999999999999 999999887665554444433

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=1.7e-41  Score=365.79  Aligned_cols=289  Identities=17%  Similarity=0.119  Sum_probs=225.0

Q ss_pred             EeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHh---hCCCCCCCcEEEEccCh-H
Q 006354          252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLPL-A  327 (649)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~  327 (649)
                      +.+.+++.....   .......++++++|+|||||||.||||++||+++.+.+.....   .+ ++.++|++++.+|+ +
T Consensus        70 ~~~~~~l~~~~~---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~  145 (437)
T 2y27_A           70 FTTKGDLRDSYP---FGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGL  145 (437)
T ss_dssp             CBCHHHHHHTTT---TTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred             CCCHHHHHhcCC---CccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccc
Confidence            345555554331   1123456789999999999999999999999998877655433   45 88899999999998 6


Q ss_pred             HHHHHHHHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHH
Q 006354          328 HVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL  404 (649)
Q Consensus       328 h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~  404 (649)
                      |..++...+.++..|+++++.+   +..+.+.           ++++++|+++++|+++..|.+.........       
T Consensus       146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-------  207 (437)
T 2y27_A          146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQL-----------IQDFRPDIIMVTPSYMLSIADEIERQGLDP-------  207 (437)
T ss_dssp             SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCCG-------
T ss_pred             cccchHHHHHHHHcCCEEEeCCCCCHHHHHHH-----------HHHhCCCEEEECHHHHHHHHHHHHHcCCCc-------
Confidence            7777777788999999998743   3334444           999999999999999999887543210000       


Q ss_pred             HHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccc
Q 006354          405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA  484 (649)
Q Consensus       405 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~  484 (649)
                                                            ..++||.+++||+++++++.+.+++.+|+++++.||+||+++
T Consensus       208 --------------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g  249 (437)
T 2y27_A          208 --------------------------------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMG  249 (437)
T ss_dssp             --------------------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTE
T ss_pred             --------------------------------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcC
Confidence                                                  014899999999999999999999888999999999999854


Q ss_pred             c-ccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCccccee
Q 006354          485 G-STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFY  563 (649)
Q Consensus       485 ~-~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~  563 (649)
                      . ++..... ... .++.|.+++.++|+|++++..   +++|+.|||+|+|            .|++.|   ++  +||+
T Consensus       250 ~~~~~~~~~-~~~-g~~~~~~~~~~~i~d~~~g~~---~~~g~~Gel~v~~------------~t~~~~---~~--~~y~  307 (437)
T 2y27_A          250 PGVASECVE-TKD-GPTIWEDHFYPEIIDPETGEV---LPDGELGELVFTS------------LTKEAL---PI--IRYR  307 (437)
T ss_dssp             EEEEECCTT-TCS-SCEECTTTEEEEEECTTTCCB---CCTTCCEEEEEEE------------SSCSSS---CC--CSEE
T ss_pred             CeeEEecCC-CCC-ceeEccCceEEEEEcCCCCCC---CCCCCccEEEEec------------CCcCCc---hh--heee
Confidence            3 3322211 111 245567899999999666654   7899999999998            244455   55  8999


Q ss_pred             eCcEEEEcc-CCeE-----EEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcc
Q 006354          564 TGDIGQVYP-DGCL-----EIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLA  624 (649)
Q Consensus       564 TGDlg~~~~-dG~l-----~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~  624 (649)
                      |||+|++++ ||++     +|+||.||+||+ +|++|+|.+||++|.+||+|. +++|++..++..+
T Consensus       308 TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~-~~~vv~~~~~~~~  372 (437)
T 2y27_A          308 TRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALA-PHYQIVLTKEGPL  372 (437)
T ss_dssp             EEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBC-SCCEEEEEEETTE
T ss_pred             cCCEEEEeCCCCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcC-ccEEEEEeecCCC
Confidence            999999998 6985     999999999998 599999999999999999999 9998886554433

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=2e-41  Score=365.95  Aligned_cols=289  Identities=17%  Similarity=0.141  Sum_probs=225.0

Q ss_pred             EeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHh---hCCCCCCCcEEEEccCh-H
Q 006354          252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLPL-A  327 (649)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~  327 (649)
                      +.+.+++.....   .......++++++|+|||||||.||||++||+++.+.......   .+ ++.++|++++.+|+ .
T Consensus        72 ~~~~~~l~~~~p---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~  147 (443)
T 2y4o_A           72 FSTKNDLRDNYP---FGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGL  147 (443)
T ss_dssp             CBCHHHHHTTTT---TTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred             CCcHHHHHhhCC---CcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcc
Confidence            445556554321   1223456789999999999999999999999998877655433   56 88999999999998 5


Q ss_pred             HHHHHHHHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHH
Q 006354          328 HVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL  404 (649)
Q Consensus       328 h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~  404 (649)
                      |..++...+.++..|+++++.+   +..+.+.           ++++++|+++++|+++..|.+........        
T Consensus       148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~--------  208 (443)
T 2y4o_A          148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQL-----------IRDFEPKIILVTPSYMLNLIDEMVRQGMD--------  208 (443)
T ss_dssp             SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCC--------
T ss_pred             cccHHHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEECHHHHHHHHHHHHHcCCC--------
Confidence            7777777788899999998843   3334444           99999999999999999988753321000        


Q ss_pred             HHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccc
Q 006354          405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA  484 (649)
Q Consensus       405 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~  484 (649)
                                                           ...++||.+++||+++++++.+.+++.+|+++++.||+||+++
T Consensus       209 -------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g  251 (443)
T 2y4o_A          209 -------------------------------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMG  251 (443)
T ss_dssp             -------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTE
T ss_pred             -------------------------------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcC
Confidence                                                 0014899999999999999999999888999999999999754


Q ss_pred             c-ccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCccccee
Q 006354          485 G-STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFY  563 (649)
Q Consensus       485 ~-~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~  563 (649)
                      . .+..... ...+ .+.|.+++.++|+|++++..   +++|+.|||+|+|.            |++.|   ++  +||+
T Consensus       252 ~~~~~~~~~-~~~g-~~~~~~~~~~~i~d~~~g~~---~~~G~~Gel~v~~~------------t~~~~---p~--~~y~  309 (443)
T 2y4o_A          252 PGVACECVE-TKDG-PVIWEDHFYPEIIDPVTGEV---LPDGSQGELVFTSL------------TKEAM---PV--IRYR  309 (443)
T ss_dssp             EEEEEECTT-TCCS-EEECTTTEEEEEECTTTCCB---CCTTCCEEEEEEES------------SCSSS---CC--SSEE
T ss_pred             CeEEeccCC-CCCc-eEEccCCeEEEEEcCCCCCC---CCCCCceEEEEeCC------------CcccC---hh--heee
Confidence            3 3322211 1112 44567899999999666654   78999999999972            34455   55  8999


Q ss_pred             eCcEEEEccC-CeE-----EEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcc
Q 006354          564 TGDIGQVYPD-GCL-----EIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLA  624 (649)
Q Consensus       564 TGDlg~~~~d-G~l-----~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~  624 (649)
                      |||+|+++++ |++     +|+||.||+||++ |++|+|.|||++|.+||+|. +++|++..++..+
T Consensus       310 TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~-G~~v~p~eiE~~l~~~p~V~-~~~vv~~~~~~~~  374 (443)
T 2y4o_A          310 TRDLTALLPPTARAMRRLAKITGRSDDMLIVR-GVNVFPSQIEEIVVALPLLS-GQFQITLSRDGHM  374 (443)
T ss_dssp             EEEEECEECCSSSSSCEECCCCEESSCCEEET-TEEECHHHHHHHHHTSTTEE-EEEEEEEEEETTE
T ss_pred             cCCEEEEcCCCCCCccccCccccccCCeEEEC-CEEECHHHHHHHHHhCcCcC-ccEEEEEecCCCC
Confidence            9999999999 987     8999999999985 99999999999999999999 9999887655433

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.96  E-value=5.2e-30  Score=269.69  Aligned_cols=248  Identities=15%  Similarity=0.127  Sum_probs=173.3

Q ss_pred             CCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC--CCCCCCcEEEEccCh-HHHHHHHHHHHHHHhCceEEe-
Q 006354          272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPL-AHVLELAAESIMLCAGCAIGY-  347 (649)
Q Consensus       272 ~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~l~~-  347 (649)
                      ..++++++|+|||||||.||||+++|+++.+.+.+....+  .++.++|++++++|+ +|+.++...+.++..|+.++. 
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~  167 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI  167 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence            4678999999999999999999999999999888654332  267889999999999 999999888888999994433 


Q ss_pred             -CCcc---ccccc---------chhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Q 006354          348 -GSTL---TMTDT---------SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA  414 (649)
Q Consensus       348 -~~~~---~l~~~---------~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~  414 (649)
                       ++|.   .+...         .......++..++++++|+++++|+++..|++.....                     
T Consensus       168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~---------------------  226 (369)
T 3hgu_A          168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV---------------------  226 (369)
T ss_dssp             CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred             cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence             2333   00000         0000002223489999999999999999987642110                     


Q ss_pred             hhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHH-hhc-CCccccccCcccccccccccCCC
Q 006354          415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN-ICM-GAPIGQAYGLTETCAGSTFSEWD  492 (649)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~-~~~-~~~l~~~YG~TE~~~~~~~~~~~  492 (649)
                                                ....++||.+++||+++++++.+.+. +.+ ++++++.||+||+++++..++. 
T Consensus       227 --------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-  279 (369)
T 3hgu_A          227 --------------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-  279 (369)
T ss_dssp             --------------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred             --------------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence                                      00113799999999999999999999 888 8999999999999876643321 


Q ss_pred             CCCCCccCCC------cccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCc
Q 006354          493 DPSVGRVGPP------VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD  566 (649)
Q Consensus       493 ~~~~~~vG~p------~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGD  566 (649)
                          .++|+|      +|+++++|+|++++..   +++|+.|||+|++.            +++.|.      .+|+|||
T Consensus       280 ----~~~G~~~~~~~~~~~~~v~ivD~~~g~~---vp~G~~GEl~vt~l------------~~~~~l------~ry~tgD  334 (369)
T 3hgu_A          280 ----TSESQQVIYDSFSPFITYDVVDSITAQT---VEYGERGNVIVTHL------------SPWAFY------PRVAERD  334 (369)
T ss_dssp             ----CTTCSSCEEECCTTTEEEEEECTTTCSB---CCTTCEEEEEEEEE------------ETTEEE------EEEEEEE
T ss_pred             ----ccCCCcccccCCCCCeEEEEECCCCCcC---CCCCCceEEEEEEc------------Cccccc------ccccCCc
Confidence                158999      9999999999656654   78999999999873            222221      4789999


Q ss_pred             EEEEccC--C-------eEEEEecCCCeEEcCCcee
Q 006354          567 IGQVYPD--G-------CLEIIDRKKDIVKLQHGEY  593 (649)
Q Consensus       567 lg~~~~d--G-------~l~i~GR~dd~iki~~G~~  593 (649)
                      ++...+.  |       .+..++|.+++.||. |.+
T Consensus       335 ~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~-gv~  369 (369)
T 3hgu_A          335 TAIRLPGVSGFAGDRLADIEPLKISEGRKVIE-GVY  369 (369)
T ss_dssp             EEEEECCSTTCSSCEEEEEEECC-------------
T ss_pred             eEEEecCCCCCcCcccccceeccccCCCceee-ecC
Confidence            9988542  3       367788888888886 653

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.54  E-value=6.5e-07  Score=96.95  Aligned_cols=136  Identities=15%  Similarity=0.265  Sum_probs=84.3

Q ss_pred             HhCCc---eEEEEecCCCCCHHHHHHHHhhc-CCccc-cccCcccccccccccCCCCCCCCccCC-Cccc-ceEEEEecC
Q 006354          442 VLGGR---IRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPC-CYIKLVSWD  514 (649)
Q Consensus       442 ~~g~~---Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~p~-~~v~i~d~~  514 (649)
                      .++++   +..+..||-   ..-...++... +.+++ ..|++||+-......+  ...+...+. .+|+ +-...++.+
T Consensus       299 ~lWPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p--~~~p~~~~~~L~p~~~ffEFIP~~  373 (609)
T 4b2g_A          299 RIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFGLNLNP--MSKPSEVSYTIMPNMAYFEFLPHE  373 (609)
T ss_dssp             HHSTTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEEECSCT--TSCGGGCCEEECTTSCEEEEEEGG
T ss_pred             HhCCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeeeeecCC--CCCcccCceeecCCcEEEEEEecc
Confidence            35677   455555663   22233444333 57766 9999999633222211  111122222 2233 233355433


Q ss_pred             CCC------c------ccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEcc----CCeEEE
Q 006354          515 EGG------Y------KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP----DGCLEI  578 (649)
Q Consensus       515 ~~~------~------~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~----dG~l~i  578 (649)
                      +..      .      ...+..|+.+||+|+..   .|.|                  -||+||+.+++.    ..+|.|
T Consensus       374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~------------------RYr~GD~v~v~~f~~~~p~i~~  432 (609)
T 4b2g_A          374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLY------------------RYRVGDILRVTGFHNSAPQFHF  432 (609)
T ss_dssp             GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCC------------------SEEEEEEEEEEEEETTEEEEEE
T ss_pred             ccccccccCCCCccccHhHcCCCCeEEEehhhh---hhhh------------------heecCCEEEEeecCCCCcEEEE
Confidence            220      0      12277889999999653   2433                  489999999973    468999


Q ss_pred             EecCCCeEEcCCceeeeCChhhhHhc
Q 006354          579 IDRKKDIVKLQHGEYISLGKIPSTTT  604 (649)
Q Consensus       579 ~GR~dd~iki~~G~~v~~~eIE~~l~  604 (649)
                      +||.+++|++. |++|++.+||+++.
T Consensus       433 ~gR~~~~l~~~-Geki~~~~v~~av~  457 (609)
T 4b2g_A          433 VRRKNVLLSID-SDKTDEAELQKAVD  457 (609)
T ss_dssp             EEETTCCBCSS-SCCBCHHHHHHHHH
T ss_pred             EEecCCeEEcc-ccCCCHHHHHHHHH
Confidence            99999999985 99999999999986

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.53  E-value=4.6e-07  Score=98.01  Aligned_cols=137  Identities=19%  Similarity=0.223  Sum_probs=86.1

Q ss_pred             HhCCc---eEEEEecCCCCCHHHHHHHHhhc-CCccc-cccCcccccccccccCCCCCCCCccCC-Cccc-ceEEEEecC
Q 006354          442 VLGGR---IRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPC-CYIKLVSWD  514 (649)
Q Consensus       442 ~~g~~---Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~p~-~~v~i~d~~  514 (649)
                      .++++   +..+..||-.   .-...++..+ +.+++ ..|++||+.......+  ...+...|. .+|+ +-...++.+
T Consensus       294 ~lWPnl~~l~~~~~G~~~---~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p--~~~~~~~~~~L~~~~~ffEFip~~  368 (581)
T 4eql_A          294 RLWPNTKYIETVVTGSMG---QYVPMLNYYCNDLPLVSTTYGSSETTFGINLDP--LCKPEDVSYTFMPNMSYFEFIPMD  368 (581)
T ss_dssp             HHSTTCCEEEEECSGGGG---GGHHHHHHHHTTCCEECCEEECSSCEEEECSCT--TSCGGGCCEEECTTSSEEEEEECS
T ss_pred             HhCCCCcEEEEEcCCChH---HHHHHHHHHcCCCccccCccccccceeeeccCC--CCCcccCceeecCCcEEEEEEecc
Confidence            45678   6666667732   2233444433 67777 9999999632222221  111122232 2233 333455433


Q ss_pred             CCC-----cccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEcc----CCeEEEEecCCCe
Q 006354          515 EGG-----YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP----DGCLEIIDRKKDI  585 (649)
Q Consensus       515 ~~~-----~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~----dG~l~i~GR~dd~  585 (649)
                      +..     ....+..|+.+||+|+..+   |-|                  -||+||+.++..    ..++.|+||.+++
T Consensus       369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~------------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~  427 (581)
T 4eql_A          369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY------------------RMRVGDIVLVTGFYNNAPQFKFVRRENVV  427 (581)
T ss_dssp             TTCCSSCEEGGGCCTTCEEEEEEECSS---SCC------------------SEECCEEEEEEEEETTEEEEEEEEETTEE
T ss_pred             ccCCCcEeCHHHcCCCceEEEEEeecc---cee------------------eEEcCCEEEEcccCCCCcEEEEEEecCCE
Confidence            211     1122678899999997642   222                  489999999975    4689999999999


Q ss_pred             EEcCCceeeeCChhhhHhcc
Q 006354          586 VKLQHGEYISLGKIPSTTTV  605 (649)
Q Consensus       586 iki~~G~~v~~~eIE~~l~~  605 (649)
                      +.+. |++++..+||+++.+
T Consensus       428 l~~~-Gekl~~~~v~~al~~  446 (581)
T 4eql_A          428 LSID-SDKTNEEDLFKAVSQ  446 (581)
T ss_dssp             ECSS-SCCEEHHHHHHHHHH
T ss_pred             EEee-eeECCHHHHHHHHHH
Confidence            9985 999999999999974

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.46  E-value=1.4e-06  Score=94.02  Aligned_cols=138  Identities=17%  Similarity=0.216  Sum_probs=83.5

Q ss_pred             HhCCceEEE--EecCCCCCHHHHHHHHhhc-CCccc-cccCcccccccccccCCCCCCCCccCC-Ccccc-eEEEEecCC
Q 006354          442 VLGGRIRFM--ICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPCC-YIKLVSWDE  515 (649)
Q Consensus       442 ~~g~~Lr~i--~~gG~~l~~~~~~~~~~~~-~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~p~~-~v~i~d~~~  515 (649)
                      .+++++++|  +.+|. +. .-...++..+ +.+++ ..|++||+-......+  ...++..+. .+|+. -...++.++
T Consensus       299 ~lWPnl~~i~~~~~G~-~~-~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p--~~~~~~~~~~L~p~~~ffEFiP~~~  374 (581)
T 4epl_A          299 ALFPNAKYVYGIMTGS-ME-PYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTP--RLSPEEATFAVIPNLGYFEFLPVSE  374 (581)
T ss_dssp             HHCTTCCCEEEECSGG-GG-GGHHHHHHHHTTSCEEECCEEETTEEEEECCCT--TSCTTTCCEEECTTSCEEEEEEC--
T ss_pred             HhCCCCceEEEEeCCC-hH-HHHHHHHHHcCCCccccCceeccceeeeeecCC--CCCccccceeecCCcEEEEEEeccc
Confidence            467888633  33442 21 1233444443 67777 9999999633322222  111122222 23332 223443222


Q ss_pred             CC-------cccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccC----CeEEEEecCCC
Q 006354          516 GG-------YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD----GCLEIIDRKKD  584 (649)
Q Consensus       516 ~~-------~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~d----G~l~i~GR~dd  584 (649)
                      ..       .+..+..|+.+||+|+..+   |-|                  -|++||+.++..-    ..+.|+||.++
T Consensus       375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~------------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~  433 (581)
T 4epl_A          375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY------------------RYRLGDVVKVIGFYNNTPQLKFICRRNL  433 (581)
T ss_dssp             -----CCCEEGGGCCTTCEEEEEEESTT---SCS------------------SEEEEEEEEEEEEETTEEEEEEEEETTC
T ss_pred             ccCCCCceeeHHHcCCCCeEEEEEeecc---cee------------------eEEcCCEEEEecccCCCcEEEEEeecCC
Confidence            11       1122778999999997642   222                  4899999999642    57999999999


Q ss_pred             eEEcCCceeeeCChhhhHhcc
Q 006354          585 IVKLQHGEYISLGKIPSTTTV  605 (649)
Q Consensus       585 ~iki~~G~~v~~~eIE~~l~~  605 (649)
                      ++++. |++++..+||+++.+
T Consensus       434 ~l~~~-Ge~~~~~~v~~al~~  453 (581)
T 4epl_A          434 ILSIN-IDKNTERDLQLSVES  453 (581)
T ss_dssp             CBCSS-SCCBCHHHHHHHHHH
T ss_pred             eEEee-eeECCHHHHHHHHHH
Confidence            99986 999999999999864

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=98.29  E-value=9.9e-08  Score=80.37  Aligned_cols=50  Identities=14%  Similarity=0.002  Sum_probs=43.4

Q ss_pred             ecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhh
Q 006354          580 DRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQ  631 (649)
Q Consensus       580 GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~  631 (649)
                      .|.|||||++ |++|+|.|||++|.+||+|. +++|++.+++..++...++.
T Consensus         1 srADDmIiv~-G~nv~P~eIE~vl~~~p~v~-~~~vv~v~~~~~~~~~~~~V   50 (109)
T 3lax_A            1 SNADDMIILK-GVNIFPIQIETILLQFKELG-SDYLITLETAESNDEMTVEV   50 (109)
T ss_dssp             CGGGSCEEET-TEEECHHHHHHHHHTCTTEE-EEEEEEEEEETTEEEEEEEE
T ss_pred             CCcCEEEEEC-CEEECHHHHHHHHHhCCCcc-cceEEEEeccccceeEEEEE
Confidence            4899999995 99999999999999999999 99999998887775554443

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=92.39  E-value=1.7  Score=45.36  Aligned_cols=105  Identities=13%  Similarity=-0.040  Sum_probs=83.0

Q ss_pred             ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC--HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceE
Q 006354          128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT  205 (649)
Q Consensus       128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~  205 (649)
                      .-.+|.+.+...+..++..+...|+.++|++..+++-+  ...+..+++++..|+.+++.++ ..++.+...+++.++++
T Consensus       103 ~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~  181 (436)
T 3qov_A          103 VIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTA  181 (436)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCE
T ss_pred             EEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCE
Confidence            34689999999998899889889999999999998753  4455677888999999887754 46788999999999999


Q ss_pred             EEECchhHHHHHHhhc------cCCCccEEEEec
Q 006354          206 LICDSKQLKKLSAVSS------SLKTIKNVIYFE  233 (649)
Q Consensus       206 vi~~~~~~~~l~~~~~------~~~~~~~ii~~~  233 (649)
                      ++..+..+..+.+...      ..+.++.+++-+
T Consensus       182 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG  215 (436)
T 3qov_A          182 LHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGA  215 (436)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEES
T ss_pred             EEECHHHHHHHHHHHHHcCCCcccCCccEEEEeC
Confidence            9999988877665421      145667666644

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=92.37  E-value=1.9  Score=44.98  Aligned_cols=105  Identities=10%  Similarity=0.034  Sum_probs=81.8

Q ss_pred             ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC--HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceE
Q 006354          128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT  205 (649)
Q Consensus       128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~  205 (649)
                      .-.+|.+.+...+..++..+...|+.++|++..+++.+  ...+...++++..|+.++++++ ..++.+...+++.++++
T Consensus       107 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~  185 (437)
T 2y27_A          107 VVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDI  185 (437)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSE
T ss_pred             EEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCE
Confidence            34689999998888888888889999999999998853  3445567888999999987755 47889999999999999


Q ss_pred             EEECchhHHHHHHhhc------cCCCccEEEEec
Q 006354          206 LICDSKQLKKLSAVSS------SLKTIKNVIYFE  233 (649)
Q Consensus       206 vi~~~~~~~~l~~~~~------~~~~~~~ii~~~  233 (649)
                      ++..+..+..+.+...      ..+.++.+++-+
T Consensus       186 l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gG  219 (437)
T 2y27_A          186 IMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGA  219 (437)
T ss_dssp             EEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEES
T ss_pred             EEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcC
Confidence            9999988877655421      124566666544

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=91.66  E-value=1.7  Score=45.48  Aligned_cols=104  Identities=11%  Similarity=-0.027  Sum_probs=81.3

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC--HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEE
Q 006354          129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL  206 (649)
Q Consensus       129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  206 (649)
                      -.+|.+.+...+..++..+...|+.++|++..+++-+  ...+...++++..|+.++++++ ..++++...+++.+++++
T Consensus       110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l  188 (443)
T 2y4o_A          110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKII  188 (443)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred             EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEE
Confidence            4589999998888888888889999999999988864  3445567888899999888765 478899999999999999


Q ss_pred             EECchhHHHHHHhhc------cCCCccEEEEec
Q 006354          207 ICDSKQLKKLSAVSS------SLKTIKNVIYFE  233 (649)
Q Consensus       207 i~~~~~~~~l~~~~~------~~~~~~~ii~~~  233 (649)
                      +..+..+..+.+...      ..+.++.+++-+
T Consensus       189 ~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gG  221 (443)
T 2y4o_A          189 LVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGA  221 (443)
T ss_dssp             EECHHHHHHHHHHHHHTTCCGGGSSCCEEEEES
T ss_pred             EECHHHHHHHHHHHHHcCCCcccCCceEEEECC
Confidence            999988777655321      124666666544

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=81.32  E-value=28  Score=36.55  Aligned_cols=100  Identities=11%  Similarity=0.121  Sum_probs=74.4

Q ss_pred             ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH-HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEE
Q 006354          128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL  206 (649)
Q Consensus       128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  206 (649)
                      .-.+|.+.+...+.....   ..++.++|++..++|-... .+..+++++..|+..+..+ ...++.+...+++.+++++
T Consensus       180 gv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~  255 (501)
T 3ipl_A          180 AVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHI  255 (501)
T ss_dssp             EEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEE
T ss_pred             EEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEE
Confidence            346899998776665543   4589999999998886533 2344678888999888775 5788999999999999999


Q ss_pred             EECchhHHHHHHhhcc-CCCccEEEE
Q 006354          207 ICDSKQLKKLSAVSSS-LKTIKNVIY  231 (649)
Q Consensus       207 i~~~~~~~~l~~~~~~-~~~~~~ii~  231 (649)
                      ......+..+.+.... ...++.++.
T Consensus       256 ~~~P~~~~~l~~~~~~~~~~lr~i~~  281 (501)
T 3ipl_A          256 SLVPQTLNWLMQQGLHEPYNLQKILL  281 (501)
T ss_dssp             EECHHHHHHHHHHTCCSCTTCCEEEE
T ss_pred             EchHHHHHHHHhcCCCCcCcccEEEE
Confidence            9999988877664322 224565555

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=80.46  E-value=32  Score=36.57  Aligned_cols=102  Identities=10%  Similarity=-0.093  Sum_probs=75.7

Q ss_pred             ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH--HH-HHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCce
Q 006354          128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FI-AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT  204 (649)
Q Consensus       128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--vv-a~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~  204 (649)
                      .-.+|.+.+...+......   .++.++|++...+|-+..+  .. .+++.+..|+..+..+ ...++.+...+++.+++
T Consensus       199 gV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t  274 (539)
T 1mdb_A          199 LIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVT  274 (539)
T ss_dssp             EEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCS
T ss_pred             EEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCe
Confidence            3468999987776655443   4788999999888866433  33 5788999999888764 57789999999999999


Q ss_pred             EEEECchhHHHHHHhh----ccCCCccEEEEec
Q 006354          205 TLICDSKQLKKLSAVS----SSLKTIKNVIYFE  233 (649)
Q Consensus       205 ~vi~~~~~~~~l~~~~----~~~~~~~~ii~~~  233 (649)
                      ++......+..+.+..    ..++.++.+++-+
T Consensus       275 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG  307 (539)
T 1mdb_A          275 ITALVPPLAMVWMDAASSRRDDLSSLQVLQVGG  307 (539)
T ss_dssp             EEEECHHHHHHHHHHHHHCCCCCTTCCEEEEES
T ss_pred             EEEccHHHHHHHHhCccccCCCccceeEEEEcC
Confidence            9999998877765432    2346677666644

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=80.30  E-value=16  Score=39.12  Aligned_cols=102  Identities=12%  Similarity=0.104  Sum_probs=74.4

Q ss_pred             ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH--HHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceE
Q 006354          128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT  205 (649)
Q Consensus       128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~  205 (649)
                      .-.+|.+.+...+......+...++.++|++..++|-...+  ...+++.+ .|+..+..+ ...++.+...+++.++++
T Consensus       209 gv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~  286 (548)
T 2d1s_A          209 GVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTS  286 (548)
T ss_dssp             CEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEE
T ss_pred             EEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcE
Confidence            34689999877666554443336889999998888865433  33466777 999888775 578899999999999999


Q ss_pred             EEECchhHHHHHHhh----ccCCCccEEEE
Q 006354          206 LICDSKQLKKLSAVS----SSLKTIKNVIY  231 (649)
Q Consensus       206 vi~~~~~~~~l~~~~----~~~~~~~~ii~  231 (649)
                      ++.....+..+.+..    ..++.++.++.
T Consensus       287 ~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~  316 (548)
T 2d1s_A          287 VILVPTLFAILNKSELLNKYDLSNLVEIAS  316 (548)
T ss_dssp             EEECHHHHHHHHHCSCGGGSCCTTCCEEEE
T ss_pred             EEecHHHHHHHHhCcccccccccceeEEEE
Confidence            999998887776532    13456666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	649
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-61
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-52
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-48
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-44
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	1e-29
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	6e-24
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	3e-18

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  214 bits (545), Expect = 2e-61
 Identities = 78/503 (15%), Positives = 153/503 (30%), Gaps = 90/503 (17%)

Query: 120 FEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQS 179
           +E       +  +Y E+    C FA+ L++ G       AI      E  +A   C R  
Sbjct: 93  WEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 152

Query: 180 ITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAV-----------SSSLKTIKN 228
                I+     +A+   + ++    +I   + ++   ++           + ++ ++++
Sbjct: 153 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEH 212

Query: 229 VIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTG 288
           VI  +  GS+ D     G   W      +     +   ++   P       I+YTSGSTG
Sbjct: 213 VIVLKRTGSDID--WQEGRDLWWRDLIEKASPEHQPEAMNAEDP-----LFILYTSGSTG 265

Query: 289 LPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAE--SIMLCAGCAIG 346
            PKGV+ T G  +  AA     + +    D+Y     +  V   +      + C    + 
Sbjct: 266 KPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 325

Query: 347 YGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFN 406
           +         +   +      V   +  ++   P                          
Sbjct: 326 FEGVPNWPTPARMCQ-----VVDKHQVNILYTAPTAI----------------------- 357

Query: 407 IGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466
               R L A             +                  R +   G P++ ++  +  
Sbjct: 358 ----RALMAEGDKAIEGTDRSSL------------------RILGSVGEPINPEAWEWYW 395

Query: 467 ICMG---APIGQAYGLTETCAGSTFSEWDDPSV--GRVGPPVPCCYIKLVSWDEGGYKTS 521
             +G    P+   +  TET             +  G    P       LV  D  G    
Sbjct: 396 KKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV--DNEG---- 449

Query: 522 DKPMP---RGEIVVGG--FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCL 576
             P      G +V+           F +  +  + Y    +    +++GD  +   DG  
Sbjct: 450 -HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN--MYFSGDGARRDEDGYY 506

Query: 577 EIIDRKKDIVKLQHGEYISLGKI 599
            I  R  D++ +  G  +   +I
Sbjct: 507 WITGRVDDVLNV-SGHRLGTAEI 528

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  187 bits (476), Expect = 1e-52
 Identities = 105/529 (19%), Positives = 165/529 (31%), Gaps = 109/529 (20%)

Query: 83  TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
            +    E++     +   +                    +LH G+    TY EV+ RA  
Sbjct: 12  NLWDFLERAAALFGRKEVV-------------------SRLHTGEVHRTTYAEVYQRARR 52

Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
              GL   G  V  R A L         A+         + T    L    + + LN  +
Sbjct: 53  LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 112

Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
              L+ D   L  + A+   LKT+++ +  +    E                     +  
Sbjct: 113 DKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE----------------GYLAYEEA 156

Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA-AAIKTLIPNPGRSDVYL 321
                DP    +     + YT+G+TGLPKGV+ +H  +V  + AA           DV L
Sbjct: 157 LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVL 216

Query: 322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPA 381
             +P+ HV            G             +  ++  G          T  A VP 
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGE-------GVTFTAGVPT 269

Query: 382 IFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441
           ++                                              L D +     R 
Sbjct: 270 VW--------------------------------------------LALADYLESTGHRL 285

Query: 442 VLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP------- 494
                +R ++ GG+             MG  + Q YGLTET      +            
Sbjct: 286 ---KTLRRLVVGGSAAPRSLIARFE-RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 341

Query: 495 ----SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
                  + G P+P   +++   DE G          GE+ + G  +T GY+ N   T  
Sbjct: 342 EKLTLKAKTGLPIPLVRLRVA--DEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRS 399

Query: 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
               D     +F TGDI     +G +EI DR KD++K   GE+IS   +
Sbjct: 400 ALTPD----GFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDL 443

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  178 bits (452), Expect = 1e-48
 Identities = 75/493 (15%), Positives = 145/493 (29%), Gaps = 67/493 (13%)

Query: 120 FEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAILAETCVEWFIAFQGCFRQ 178
           FE    G     TY E+ +  C  A  L  + G       A+      E  I      R 
Sbjct: 80  FEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 139

Query: 179 SITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS---LKTIKNVIYFEND 235
                 +++    ++L   +N+     +I   +  +    + +       ++      + 
Sbjct: 140 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHV 199

Query: 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI 295
              + +       +         EK   ++    +         ++YTSGSTG PKGV  
Sbjct: 200 LVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQH 259

Query: 296 THGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTD 355
           +    +  A        +  + DV+     +  +         +  G  +   +TL    
Sbjct: 260 STAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWI----TGHTYVVYGPLLYGCATLVFEG 315

Query: 356 TSSKIKKGTKGD-VSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414
           T +        D +   K T     P                              R L 
Sbjct: 316 TPAYPNYSRYWDIIDEHKVTQFYVAPTAL---------------------------RLLK 348

Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG---A 471
               S+     L+ +                  R +   G P++A+   + +  +G    
Sbjct: 349 RAGDSYIENHSLKSL------------------RCLGSVGEPIAAEVWEWYSEKIGKNEI 390

Query: 472 PIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG 528
           PI   Y  TE+ +          +    G    P       ++  D    +  +     G
Sbjct: 391 PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVL--DPNTGEELNTSHAEG 448

Query: 529 EIVVGGF--NVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
            + V     +     + N  +  + Y     G  +++TGD      DG + I+ R  D+V
Sbjct: 449 VLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG--YYFTGDGAAKDKDGYIWILGRVDDVV 506

Query: 587 KLQHGEYISLGKI 599
            +  G  +S  +I
Sbjct: 507 NVS-GHRLSTAEI 518

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  164 bits (416), Expect = 2e-44
 Identities = 101/520 (19%), Positives = 174/520 (33%), Gaps = 89/520 (17%)

Query: 83  TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
           T      ++ K +                +  +D      +        TY E F+ +  
Sbjct: 18  TAGEQLHKAMKRYALVP----------GTIAFTDAHIEVNI--------TYAEYFEMSVR 59

Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
            A  +  +G N + R  + +E  +++F+   G     + V        E  L++S+N +Q
Sbjct: 60  LAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ 119

Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
            T +    K L+K+  V   L  I+ +I  ++          G  S +T  +        
Sbjct: 120 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT-----DYQGFQSMYTFVTSHLPPGFN 174

Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA 322
           +   V  S      +A+IM +SGSTGLPKGV + H       +  +  I           
Sbjct: 175 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAI 234

Query: 323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAI 382
                          ++      G  +TL       ++    + +  +   +L       
Sbjct: 235 L-------------SVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQD----- 276

Query: 383 FDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442
                                     YK + A +  + F  +    ++    +       
Sbjct: 277 --------------------------YKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIA 310

Query: 443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502
            GG       G        +          I Q YGLTET +    +   D   G VG  
Sbjct: 311 SGGAPLSKEVG--------EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKV 362

Query: 503 VPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
           VP    K+V  D G      K +    RGE+ V G  + +GY NNP  T+ +   D    
Sbjct: 363 VPFFEAKVVDLDTG------KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKD---- 412

Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
            W ++GDI     D    I+DR K ++K   G  ++  ++
Sbjct: 413 GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAEL 451

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  121 bits (303), Expect = 1e-29
 Identities = 87/523 (16%), Positives = 151/523 (28%), Gaps = 114/523 (21%)

Query: 83  TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
           T+  +  ++    P    L             + G +            T+ E+  R  +
Sbjct: 3   TVNEMLRRAATRAPDHCAL----------AVPARGLRL-----------THAELRARVEA 41

Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
            A+ L   G     R A++A    +  IA     R       +   L    L   +   +
Sbjct: 42  VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGE 101

Query: 203 VTTLICD-SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKL 261
           +T  +    +Q+      S S   I  +     DG     G                   
Sbjct: 102 MTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYG------------------- 142

Query: 262 GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-LIPNPGRSDVY 320
               P++         A I YTSG+TGLPK  +I      +    + T +    GR +V 
Sbjct: 143 ---PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199

Query: 321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP 380
           L  +PL HV+   A  +   A               + ++ +  +       PT + A+ 
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALA 259

Query: 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR 440
           A                                                   ++   S+R
Sbjct: 260 AAAAHAG--------------------------------------------SSLKLDSLR 275

Query: 441 AVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVG 500
            V           GA +       ++  +       YG TE        +    +    G
Sbjct: 276 HV--------TFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPG 327

Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGE----IVVGGFNVTAGYFNNPGKTSEVYKVDE 556
                  +++           D+ +  GE    IV    +   GY N P  T+E  +   
Sbjct: 328 FFSEVRIVRIGGGV-------DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ--- 377

Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
               W+ T D+    P+G + I+ R  D++    GE I   +I
Sbjct: 378 --DGWYRTSDVAVWTPEGTVRILGRVDDMIISG-GENIHPSEI 417

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  103 bits (258), Expect = 6e-24
 Identities = 77/522 (14%), Positives = 133/522 (25%), Gaps = 98/522 (18%)

Query: 78  WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
           W G  T   L       +  DR              A        +  G+  W +Y E+ 
Sbjct: 22  WAG-ETFGDLLRDRAAKYG-DR-------------IA--------ITCGNTHW-SYRELD 57

Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
            RA   A+G    G     R  +      E+F      FR     V    S     + + 
Sbjct: 58  TRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYF 117

Query: 198 LNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSE 257
               +    I                               K   +   I       F  
Sbjct: 118 CEFAEAAAYIIPDAYSGFDYRS------------LARQVQSKLPTLKNIIVAGEAEEFLP 165

Query: 258 VEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317
           +E L    PV       + VA +  + GSTGL K +  TH + + +      +      +
Sbjct: 166 LEDL-HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHST 224

Query: 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMA 377
               A     +                +  G  + ++                  P+   
Sbjct: 225 VYLAALPMAHNY-----PLSSPGVLGVLYAGGRVVLSP----------------SPSPDD 263

Query: 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFK 437
           A P I             E+  +T                 S        ++L       
Sbjct: 264 AFPLI-------------EREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL------- 303

Query: 438 SVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVG 497
                +GG            +        +   A     Y   +        E    + G
Sbjct: 304 ----QVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPE-----EIIVNTQG 354

Query: 498 RVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557
           +   P     +    WD+       KP   G ++  G     GY+      +  +     
Sbjct: 355 KPMSPYDESRV----WDDHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASF----T 404

Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
              ++ TGDI ++  DG + +  R KD +    GE ++  ++
Sbjct: 405 EDGFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEV 445

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 85.7 bits (211), Expect = 3e-18
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 8/156 (5%)

Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP-VPC 505
           I+ +I  G+  S                 AYG TET   +T       ++G   P   P 
Sbjct: 279 IQTLITAGSATSPSLVNKW--KEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPI 336

Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD--ERGMCWFY 563
              ++   DE            GE+ +GG  +  GY+  P  TS+ +  +    G   + 
Sbjct: 337 QNTQIYIVDENL--QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYK 394

Query: 564 TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKI 599
           TGD  +   DG +E + R  + VK+  G  + L ++
Sbjct: 395 TGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEV 429

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	649
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.2e-68  Score=601.33  Aligned_cols=469  Identities=17%  Similarity=0.202  Sum_probs=372.4

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 006354           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (649)
Q Consensus        83 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (649)
                      -...+++++++++||++|+++..          +.       .+..+++||+||.++++++|++|+++||++||+|+|++
T Consensus        73 ~~~n~ldrh~~~~~d~~Ali~~~----------~~-------~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~  135 (643)
T d1pg4a_          73 LAANCLDRHLQENGDRTAIIWEG----------DD-------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYM  135 (643)
T ss_dssp             HHHHHTGGGHHHHTTSEEEEEEC----------SS-------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEe----------cC-------CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEec
Confidence            34678888899999999999742          11       24456899999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh---------HHHHHHhh--ccCCCccEEEE
Q 006354          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVS--SSLKTIKNVIY  231 (649)
Q Consensus       163 ~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~--~~~~~~~~ii~  231 (649)
                      +|++++++++|||+++|++++|++|.++++++.+++++++++++|+++..         ...+....  ...+.++.++.
T Consensus       136 ~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~  215 (643)
T d1pg4a_         136 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIV  215 (643)
T ss_dssp             CSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEE
T ss_pred             ccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEE
Confidence            99999999999999999999999999999999999999999999997542         22222222  24566777877


Q ss_pred             ecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHH-HHhh
Q 006354          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTL  310 (649)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~-~~~~  310 (649)
                      +........     . .......+.+..... .....+...+++|+++|+|||||||.||||++||++++..... ....
T Consensus       216 ~~~~~~~~~-----~-~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~  288 (643)
T d1pg4a_         216 LKRTGSDID-----W-QEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYV  288 (643)
T ss_dssp             ECSSCCCCC-----C-CBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHH
T ss_pred             eccCCcccc-----c-ccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHh
Confidence            765533210     0 011233344444332 2333445668899999999999999999999999997665444 4555


Q ss_pred             CCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       311 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                      + .+.++|++++++|++|++++.. ++.+|+.|+++++.+.......    +..++..++++++|+++++|++++.|++.
T Consensus       289 ~-~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~l~~l~~~  363 (643)
T d1pg4a_         289 F-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT----PARMCQVVDKHQVNILYTAPTAIRALMAE  363 (643)
T ss_dssp             T-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS----TTHHHHHHHHHTCSEEEECHHHHHHHHTT
T ss_pred             h-CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCC----HHHHHHHHHHHCCcEEEehHHHHHHHHhC
Confidence            6 8899999999999999999876 6678999999998332111111    11223339999999999999999988763


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      .....                                             +..+.++||.+++||+++++++.+++.+.+
T Consensus       364 ~~~~~---------------------------------------------~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~  398 (643)
T d1pg4a_         364 GDKAI---------------------------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKI  398 (643)
T ss_dssp             GGGGT---------------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHT
T ss_pred             cchhc---------------------------------------------cccCCCceEEEEEEeCCCCHHHHHHHHHHh
Confidence            21110                                             111235899999999999999999998887


Q ss_pred             ---CCccccccCcccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcc--cccccccc
Q 006354          470 ---GAPIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYF  542 (649)
Q Consensus       470 ---~~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY~  542 (649)
                         ++++++.||+||++++++.....  ..+.+++|+|++|++++|+| +++..   +++|+.|||+|+|  |+++.|||
T Consensus       399 g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~---~~~g~~Gel~v~~~~p~~~~~~~  474 (643)
T d1pg4a_         399 GKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHP---QEGATEGNLVITDSWPGQARTLF  474 (643)
T ss_dssp             TTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCB---CCSSEEEEEEECSCCTTCCCEET
T ss_pred             CCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCC---CCCCceEEEEEecCCCccccccc
Confidence               47799999999998877654433  34568999999999999999 55554   6789999999999  57899999


Q ss_pred             CCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354          543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK  622 (649)
Q Consensus       543 ~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~  622 (649)
                      ++++.+.+.+....+  |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|. +|+|+|.+++.
T Consensus       475 ~~~~~~~~~~~~~~~--g~~~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~-eaaVvg~~d~~  550 (643)
T d1pg4a_         475 GDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIA-EAAVVGIPHAI  550 (643)
T ss_dssp             TCHHHHHHHHHSSST--TSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEE-EEEEEEEEETT
T ss_pred             CChhhchhhhcccCC--CeEEcCCEEEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEEEECCC
Confidence            999999888763334  89999999999999999999999999998 499999999999999999999 99999999988


Q ss_pred             cccchhhhhhh
Q 006354          623 LASSTKIFQSC  633 (649)
Q Consensus       623 ~~~~~~~~~~~  633 (649)
                      .|+.+.+++..
T Consensus       551 ~ge~~~a~Vv~  561 (643)
T d1pg4a_         551 KGQAIYAYVTL  561 (643)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CCeEEEEEEEE
Confidence            88766655443

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.2e-67  Score=576.93  Aligned_cols=459  Identities=22%  Similarity=0.276  Sum_probs=369.5

Q ss_pred             CCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCC
Q 006354           77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT  156 (649)
Q Consensus        77 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd  156 (649)
                      ..+...||+++|+++|+++||++|+++.+          +         ++.+++||+||.++++++|++|.++|+++||
T Consensus         6 ~~~~~~~l~~~l~~~a~~~pd~~av~~~~----------~---------g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd   66 (534)
T d1v25a_           6 MMDEELNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGD   66 (534)
T ss_dssp             BCCCCCCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred             cCCCCCCHHHHHHHHHHHcCCCeEEEEec----------C---------CceEEEcHHHHHHHHHHHHHHHHHCCcCCCC
Confidence            34455689999999999999999998753          2         3446799999999999999999999999999


Q ss_pred             EEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCC
Q 006354          157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG  236 (649)
Q Consensus       157 ~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~  236 (649)
                      +|+|+++|++++++++|||+++|++++|++|.++.+++.++|+.+++++++++.........+....+.++.++......
T Consensus        67 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (534)
T d1v25a_          67 RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKA  146 (534)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCC
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999988888888888877755443


Q ss_pred             CCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC-CCCC
Q 006354          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PNPG  315 (649)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~-~~~~  315 (649)
                      ...            .......    ...........++++++|+|||||||.||||+++|+++++......... ....
T Consensus       147 ~~~------------~~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~  210 (534)
T d1v25a_         147 PEG------------YLAYEEA----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALS  210 (534)
T ss_dssp             CTT------------CEEHHHH----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCC
T ss_pred             ccc------------ccccccc----ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccc
Confidence            211            1111111    1122234556788999999999999999999999999987765544432 3667


Q ss_pred             CCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHH
Q 006354          316 RSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE  395 (649)
Q Consensus       316 ~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  395 (649)
                      .+|++++.+|++|.+++...+..+..|+++++..+.....       .+...+.++++|++.++|.++..+.......  
T Consensus       211 ~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~-------~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~--  281 (534)
T d1v25a_         211 EKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPA-------SLVELFDGEGVTFTAGVPTVWLALADYLEST--  281 (534)
T ss_dssp             TTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHH-------HHHHHHHHTTCCEEEECHHHHHHHHHHHHHH--
T ss_pred             cccccccccchhhhccccccceeeeecceeeecccccccc-------ccchhhhhccccccccCchhhhhhhhhhccc--
Confidence            8899999999999999998888888888888744321111       1222388999999999999999887753321  


Q ss_pred             hhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcccc
Q 006354          396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ  475 (649)
Q Consensus       396 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~  475 (649)
                                                                   ....++||.+++||++++++..+++++ ++.++++
T Consensus       282 ---------------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~  315 (534)
T d1v25a_         282 ---------------------------------------------GHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQ  315 (534)
T ss_dssp             ---------------------------------------------TCCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEE
T ss_pred             ---------------------------------------------cccccceeEEEEecCCCCHHHHHHHHH-hCCeeee
Confidence                                                         112368999999999999999999986 4899999


Q ss_pred             ccCcccccccccccCCCCC-----------CCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCC
Q 006354          476 AYGLTETCAGSTFSEWDDP-----------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN  544 (649)
Q Consensus       476 ~YG~TE~~~~~~~~~~~~~-----------~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~  544 (649)
                      .||+||++.+++.......           ..+++|+|+||++++|+| ++++..+ ...++.|||+|+|++++.||+++
T Consensus       316 ~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~-~~~~~~Gel~v~g~~v~~gY~~~  393 (534)
T d1v25a_         316 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGGYYGN  393 (534)
T ss_dssp             EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSSCBTC
T ss_pred             eccccccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCC-CCCCeeEEEEEcCCcccceecCC
Confidence            9999999988765433221           237899999999999999 5565533 44578999999999999999999


Q ss_pred             CccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcc
Q 006354          545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLA  624 (649)
Q Consensus       545 ~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~  624 (649)
                      ++.|++.|.  .+  |||+|||+|++++||.++++||+||+||+ +|++|+|.|||++|.+||+|. +|+|+|..++..+
T Consensus       394 ~~~t~~~~~--~d--g~~~TGDlg~~~~~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~-~a~v~~~~~~~~~  467 (534)
T d1v25a_         394 EEATRSALT--PD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVK-EAAVVAIPHPKWQ  467 (534)
T ss_dssp             HHHHHTTBC--TT--SCEEEEEEEEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC-----------CEEEEECSSSS
T ss_pred             hhhhhhhcc--cC--CCCccCceeEECCCccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEEEECCCCC
Confidence            999999986  66  89999999999999999999999999997 599999999999999999999 9999999999888


Q ss_pred             cchhhhhhh
Q 006354          625 SSTKIFQSC  633 (649)
Q Consensus       625 ~~~~~~~~~  633 (649)
                      +.+.++...
T Consensus       468 ~~l~a~vv~  476 (534)
T d1v25a_         468 ERPLAVVVP  476 (534)
T ss_dssp             EEEEECC--
T ss_pred             eEEEEEEEe
Confidence            776665543

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9e-67  Score=588.31  Aligned_cols=473  Identities=15%  Similarity=0.156  Sum_probs=371.6

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHH-HCCCCCCCEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAI  160 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i  160 (649)
                      +..+.+|+++|+++||++|+++..          +.       .+..+++||+||.++++++|++|+ ++||++||+|+|
T Consensus        59 N~~~n~ldr~a~~~pd~~Ali~~~----------~~-------~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i  121 (640)
T d1ry2a_          59 NACYNCVDRHALKTPNKKAIIFEG----------DE-------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV  121 (640)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEEC----------SS-------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEE
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEEe----------cC-------CCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            455899999999999999999742          11       244568999999999999999997 679999999999


Q ss_pred             EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchh---------HHHHHHhhccCCCccEEEE
Q 006354          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLKTIKNVIY  231 (649)
Q Consensus       161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~~~~~~ii~  231 (649)
                      +++|++++++++|||+++|++++|+++.++++++.++++++++++++++...         ...+.........+.....
T Consensus       122 ~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (640)
T d1ry2a_         122 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV  201 (640)
T ss_dssp             CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEE
T ss_pred             EeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeee
Confidence            9999999999999999999999999999999999999999999999997642         3344444455556666655


Q ss_pred             ecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHH-hh
Q 006354          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-TL  310 (649)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~-~~  310 (649)
                      ..........    . ............. .........+..++|+++|+|||||||.||||+++|++++....... ..
T Consensus       202 ~~~~~~~~~~----~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~  275 (640)
T d1ry2a_         202 YRKTNNPSVA----F-HAPRDLDWATEKK-KYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT  275 (640)
T ss_dssp             ECSSCCSSCC----C-CSSSEEEHHHHHT-TSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH
T ss_pred             eccccccccc----c-ccccccccccccc-ccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhh
Confidence            5444322100    0 0111222222222 22233334566789999999999999999999999999877765554 45


Q ss_pred             CCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354          311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (649)
Q Consensus       311 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  389 (649)
                      + .+.++|++++++|++|+++... ++.+|+.|+++++.+.......    ...++..++++++|++.++|++++.|.+.
T Consensus       276 ~-~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  350 (640)
T d1ry2a_         276 F-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN----YSRYWDIIDEHKVTQFYVAPTALRLLKRA  350 (640)
T ss_dssp             S-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSC----TTHHHHHHHHTTCSEEEECHHHHHHHTTS
T ss_pred             c-CCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCC----HHHHHHHHHHhCccEEEcChHHHHHHHhc
Confidence            5 8899999999999999999765 6778999998888332211111    12233339999999999999999887542


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (649)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~  469 (649)
                      .....                                             +....++||.+++||+++++++.+++.+.+
T Consensus       351 ~~~~~---------------------------------------------~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~  385 (640)
T d1ry2a_         351 GDSYI---------------------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKI  385 (640)
T ss_dssp             CTTSS---------------------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTT
T ss_pred             ccccc---------------------------------------------ccCCCCceEEEEEecccCcHHHHHHHHHhc
Confidence            11000                                             011225899999999999999999999988


Q ss_pred             C---CccccccCcccccccccccCCC---CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcc--ccccccc
Q 006354          470 G---APIGQAYGLTETCAGSTFSEWD---DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGY  541 (649)
Q Consensus       470 ~---~~l~~~YG~TE~~~~~~~~~~~---~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY  541 (649)
                      |   +++++.||+||++.........   ..+.+++|+|+||++++|+|++++...  .+.+..|||+|+|  |+++.||
T Consensus       386 g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~--~~~~~~Gel~i~~~~p~~~~gy  463 (640)
T d1ry2a_         386 GKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL--NTSHAEGVLAVKAAWPSFARTI  463 (640)
T ss_dssp             SCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCE--ECSSCEEEEEESSCCTTSCCEE
T ss_pred             CCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCccc--CCCCceEEEEEEecCCCccccc
Confidence            5   5689999999998776554433   345689999999999999995554432  3456679999998  6899999


Q ss_pred             cCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCC
Q 006354          542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPM  621 (649)
Q Consensus       542 ~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~  621 (649)
                      |++++.|.+.|..+.+  |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|. +|+|+|.+++
T Consensus       464 ~~~~e~t~~~~~~~~~--gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~-~a~Vvg~~d~  539 (640)
T d1ry2a_         464 WKNHDRYLDTYLNPYP--GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVA-ECAVVGFNDD  539 (640)
T ss_dssp             TTCHHHHHHHHTSSST--TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEE-EEEEECCCCC
T ss_pred             ccCHHHHHhhhccCCC--CeEEcCCceeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCcc-EEEEEEEECC
Confidence            9999999999874344  89999999999999999999999999997 599999999999999999999 9999999999


Q ss_pred             Ccccchhhhhhh
Q 006354          622 KLASSTKIFQSC  633 (649)
Q Consensus       622 ~~~~~~~~~~~~  633 (649)
                      ..|+.+.+++..
T Consensus       540 ~~ge~~~a~Vv~  551 (640)
T d1ry2a_         540 LTGQAVAAFVVL  551 (640)
T ss_dssp             TTSCCCEEEEEE
T ss_pred             CCCeEEEEEEEE
Confidence            988877766543

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.5e-66  Score=575.10  Aligned_cols=453  Identities=23%  Similarity=0.296  Sum_probs=367.6

Q ss_pred             CCHHHHHHHHHHhC---CCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 006354           82 STMAALFEQSCKSH---PQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (649)
Q Consensus        82 ~tl~~~~~~~a~~~---p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (649)
                      .|+.++|.++++++   |+++|+.+..          .+           +++||+||.+++.++|++|+++|+++||+|
T Consensus        17 ~t~~~~l~~~~~~~~~~P~~~a~~d~~----------~~-----------~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~V   75 (541)
T d1lcia_          17 GTAGEQLHKAMKRYALVPGTIAFTDAH----------IE-----------VNITYAEYFEMSVRLAEAMKRYGLNTNHRI   75 (541)
T ss_dssp             SCHHHHHHHHHHHHHTSTTCEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEE
T ss_pred             CCHHHHHHHHHHhhCCCCCeEEEEeCC----------CC-----------eEeeHHHHHHHHHHHHHHHHHcCcCCCCEE
Confidence            59999999999998   4445554310          12           369999999999999999999999999999


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCC
Q 006354          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE  238 (649)
Q Consensus       159 ~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~  238 (649)
                      +|+++|++++++++|||+++|++++|+++.++.+++.++|++++++++|++++..+.+.++...++.++.+++++.....
T Consensus        76 ai~~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (541)
T d1lcia_          76 VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY  155 (541)
T ss_dssp             EEECSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB
T ss_pred             EEEeCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887765432


Q ss_pred             ccCCCCCCCCCceEeehHHHHhcCC------CCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC-
Q 006354          239 KDSGVSGGISNWTVSSFSEVEKLGK------RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-  311 (649)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~-  311 (649)
                      .           ...++.+......      ....+.....++++|+|+|||||||.||||++||++++.........+ 
T Consensus       156 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~  224 (541)
T d1lcia_         156 Q-----------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF  224 (541)
T ss_dssp             T-----------TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT
T ss_pred             c-----------ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc
Confidence            2           1223333222211      112223445678999999999999999999999999998877766543 


Q ss_pred             -CCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCc---ccccccchhhccCccccceeecceEEEechHHHHHHH
Q 006354          312 -PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST---LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR  387 (649)
Q Consensus       312 -~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~---~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~  387 (649)
                       ..+.+++++++++|++|.+++...+..+..|+.++....   ......           +..+++|.++.+|.++..+.
T Consensus       225 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~t~~~~~p~~~~~~~  293 (541)
T d1lcia_         225 GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFSFFA  293 (541)
T ss_dssp             SCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEECCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhHHH-----------HhhhhccccccCcccccccc
Confidence             357789999999999999999988888888888877333   233333           78899999999999998886


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHh
Q 006354          388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI  467 (649)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~  467 (649)
                      ......                                               ....+++|.+++||++++++..+.+.+
T Consensus       294 ~~~~~~-----------------------------------------------~~~~~~l~~v~~gG~~~~~~~~~~~~~  326 (541)
T d1lcia_         294 KSTLID-----------------------------------------------KYDLSNLHEIASGGAPLSKEVGEAVAK  326 (541)
T ss_dssp             HCSCGG-----------------------------------------------GSCCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             cccccc-----------------------------------------------ccccccceEEEeccccccccccccccc
Confidence            532110                                               111258999999999999999999988


Q ss_pred             hcCC-ccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCc
Q 006354          468 CMGA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG  546 (649)
Q Consensus       468 ~~~~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~  546 (649)
                      .++. .++++||+||+++.++.........+++|+|+||++++|+|+|++..   ++.|+.|||+|+|++++.||+++++
T Consensus       327 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~---~~~g~~Gel~v~g~~~~~gY~~~~~  403 (541)
T d1lcia_         327 RFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKT---LGVNQRGELCVRGPMIMSGYVNNPE  403 (541)
T ss_dssp             HTTCSCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCSEETTBHH
T ss_pred             ccCCceeeecCCccccCceEEecCcccCCCCccccccCCCEEEEEECCCCcC---CCCCCeEEEEEccCccCCeeCCChh
Confidence            8864 68999999999999988887777889999999999999999777654   7899999999999999999999999


Q ss_pred             cchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccc
Q 006354          547 KTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASS  626 (649)
Q Consensus       547 ~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~  626 (649)
                      .+...+.  .+  +||+|||+|++++||.++++||.||+||+ +|++|+|.+||++|.+||+|. +|+|++..++..++.
T Consensus       404 ~~~~~~~--~~--~~~~TGDl~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~-~~~v~~~~~~~~g~~  477 (541)
T d1lcia_         404 ATNALID--KD--GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIF-DAGVAGLPDDDAGEL  477 (541)
T ss_dssp             HHHHHBC--TT--SCEEEEEEEEECTTCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEE-EEEEEEEEETTTEEE
T ss_pred             hhhhccc--CC--ccccCCCeeEEcCCeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCcc-EEEEEEEECCCCCEE
Confidence            9988876  55  89999999999999999999999999998 599999999999999999999 999999988877766


Q ss_pred             hhhhhhh
Q 006354          627 TKIFQSC  633 (649)
Q Consensus       627 ~~~~~~~  633 (649)
                      +.++..+
T Consensus       478 ~~a~v~~  484 (541)
T d1lcia_         478 PAAVVVL  484 (541)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5554443

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=6.5e-63  Score=542.43  Aligned_cols=441  Identities=19%  Similarity=0.217  Sum_probs=360.7

Q ss_pred             cccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCC
Q 006354           74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN  153 (649)
Q Consensus        74 ~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~  153 (649)
                      ...++|...||+++|+++|+++||++|+++            +++           ++||+||.++++++|++|+++|++
T Consensus        15 ~~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~------------~~~-----------~~Ty~eL~~~v~~lA~~L~~~Gv~   71 (514)
T d1amua_          15 TKAEYPRDKTIHQLFEEQVSKRPNNVAIVC------------ENE-----------QLTYHELNVKANQLARIFIEKGIG   71 (514)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHHcCcC
Confidence            557788889999999999999999999997            444           699999999999999999999999


Q ss_pred             CCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEec
Q 006354          154 VDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE  233 (649)
Q Consensus       154 ~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~  233 (649)
                      +||+|+|+++|+++|++++|||+++|++++|+++.++++++.+++++++++++|++....+.+......    .....  
T Consensus        72 ~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~----~~~~~--  145 (514)
T d1amua_          72 KDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN----GQVEI--  145 (514)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC----SEEEE--
T ss_pred             CcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccc----ccccc--
Confidence            999999999999999999999999999999999999999999999999999999999877665433211    11111  


Q ss_pred             CCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCC
Q 006354          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN  313 (649)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~  313 (649)
                                           ................+..++++|+|+|||||||.||+|++||+++..........+ .
T Consensus       146 ---------------------~~~~~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~  203 (514)
T d1amua_         146 ---------------------FEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-N  203 (514)
T ss_dssp             ---------------------CCCSTTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-C
T ss_pred             ---------------------cccccccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-c
Confidence                                 011111111222233556789999999999999999999999999999999999988 9


Q ss_pred             CCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHH
Q 006354          314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK  393 (649)
Q Consensus       314 ~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  393 (649)
                      ...+|++++.+|++|..++..++.++..|+++++..+....+...     ....+..+.++.+..+|........     
T Consensus       204 ~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-----  273 (514)
T d1amua_         204 VTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK-----FEQYINQKEITVITLPPTYVVHLDP-----  273 (514)
T ss_dssp             CCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHH-----HHHHHHHTTCCEEEECHHHHTTSCT-----
T ss_pred             ccccccccceeccccccccccccccccccccccccccccccchhh-----hhhhhhhhhcccccceeeecccccc-----
Confidence            999999999999999999999999999999999855544333211     1122677888888888865442210     


Q ss_pred             HHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcc
Q 006354          394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI  473 (649)
Q Consensus       394 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l  473 (649)
                                                                      ...++++.+++||+++++++.+++..  ++.+
T Consensus       274 ------------------------------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~  303 (514)
T d1amua_         274 ------------------------------------------------ERILSIQTLITAGSATSPSLVNKWKE--KVTY  303 (514)
T ss_dssp             ------------------------------------------------TTCCSCSEEEEESSCCCHHHHHHHTT--TSEE
T ss_pred             ------------------------------------------------cccccccEEEEecccCCHHHhhhhcc--ceeE
Confidence                                                            11258999999999999999887766  6899


Q ss_pred             ccccCcccccccccccCCCCC---CCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchh
Q 006354          474 GQAYGLTETCAGSTFSEWDDP---SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE  550 (649)
Q Consensus       474 ~~~YG~TE~~~~~~~~~~~~~---~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~  550 (649)
                      ++.||+||++.+++.......   ..++.|.+.++..+.+.| +++..   +++|+.|||+|+|+.++.||+++++.+.+
T Consensus       304 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~---~~~g~~GEl~v~~~~~~~gY~~~~~~~~~  379 (514)
T d1amua_         304 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQL---KSVGEAGELCIGGEGLARGYWKRPELTSQ  379 (514)
T ss_dssp             EEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCB---CCTTCEEEEEEEETTCCCEETTCHHHHHH
T ss_pred             EEeeccccCceeeeeccccccccCcccccccceeeeeEeeec-cccee---cCCCCeeEEEEccCcccccccccccccce
Confidence            999999999998876554433   346788999999999998 55554   67899999999999999999999999999


Q ss_pred             hhccC--CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354          551 VYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK  628 (649)
Q Consensus       551 ~f~~~--~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~  628 (649)
                      .|..+  .+++|||+|||+|++|+||+|+|+||++|+||+ +|++|+|.+||++|.+||+|. +|+|++.+++..++.+.
T Consensus       380 ~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~-~~~V~~~~~~~~g~~~~  457 (514)
T d1amua_         380 KFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYIS-ETAVSVHKDHQEQPYLC  457 (514)
T ss_dssp             HEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEE-EEEEEEEECTTSCEEEE
T ss_pred             eeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCcc-EEEEEEEECCCCCEEEE
Confidence            88643  234599999999999999999999999999998 599999999999999999999 99999999888776554


Q ss_pred             hhh
Q 006354          629 IFQ  631 (649)
Q Consensus       629 ~~~  631 (649)
                      ++.
T Consensus       458 a~v  460 (514)
T d1amua_         458 AYF  460 (514)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1e-60  Score=527.31  Aligned_cols=441  Identities=21%  Similarity=0.247  Sum_probs=357.0

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      .|++++|+++|+++||++|+++            ++           +.+||+||.++++++|++|+++|+++||+|+|+
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~------------~~-----------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~   81 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQ   81 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             CCHHHHHHHHHHHCCCCeEEEE------------CC-----------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEE
Confidence            6999999999999999999986            22           369999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHH-----HHHHhhccCCCccEEEEecCCC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK-----KLSAVSSSLKTIKNVIYFENDG  236 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~l~~~~~~~~~~~~ii~~~~~~  236 (649)
                      ++|++++++++|||+++|+++||++|.++.+++.++|++++++++++++....     .........+.+...+......
T Consensus        82 ~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (536)
T d1mdba_          82 LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE  161 (536)
T ss_dssp             CCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT
T ss_pred             eCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc
Confidence            99999999999999999999999999999999999999999999999754321     1222223334444443322211


Q ss_pred             CCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCC
Q 006354          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR  316 (649)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  316 (649)
                      .              ...++++    ...........++|+++|+|||||||.||||++||+++.+.+......+ .+.+
T Consensus       162 ~--------------~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~  222 (536)
T d1mdba_         162 E--------------FLPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDH  222 (536)
T ss_dssp             T--------------SEEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCT
T ss_pred             c--------------ccchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-cccc
Confidence            1              1122221    1222334566889999999999999999999999999999999999888 8999


Q ss_pred             CcEEEEccChHHHHHHHH-HHH-HHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHH
Q 006354          317 SDVYLAYLPLAHVLELAA-ESI-MLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (649)
Q Consensus       317 ~d~~l~~~pl~h~~~~~~-~~~-~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  391 (649)
                      +|++++..|++|.+++.. .+. .+..|++++.   +++..+...           +++++++.+..+|..+..+.....
T Consensus       223 ~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  291 (536)
T d1mdba_         223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAAS  291 (536)
T ss_dssp             TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHHH
T ss_pred             ccccccccccccccceeeccccccccccccccccCCCCHHHHHHH-----------Hhhhccccccccchhhhhhhhhcc
Confidence            999999999999999865 333 4455666665   344444444           899999999999999988766432


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCC
Q 006354          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA  471 (649)
Q Consensus       392 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~  471 (649)
                      ...                                               ...++++.+++||+++++...+++.+.++.
T Consensus       292 ~~~-----------------------------------------------~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~  324 (536)
T d1mdba_         292 SRR-----------------------------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGC  324 (536)
T ss_dssp             HCC-----------------------------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCS
T ss_pred             ccc-----------------------------------------------cccCcceeEEEeccccccccccchhhccCc
Confidence            211                                               112589999999999999999999999999


Q ss_pred             ccccccCcccccccccccCC-CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchh
Q 006354          472 PIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE  550 (649)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~  550 (649)
                      .....|+.+|.+........ .....+++|.|+++....+++.++++.   +++++.|||+|+|+.++.||+++++.+..
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~---~~~~~~Gel~v~g~~~~~gY~~~~~~~~~  401 (536)
T d1mdba_         325 TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRD---VKPGETGHLLTRGPYTIRGYYKAEEHNAA  401 (536)
T ss_dssp             EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCB---CCTTCCEEEEEECTTSCSSCTTCHHHHHH
T ss_pred             eeeeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCe---ecccccceeecCCCccccccccccccccc
Confidence            99999999987665544332 223447899998766666666466654   67899999999999999999999999988


Q ss_pred             hhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhh
Q 006354          551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIF  630 (649)
Q Consensus       551 ~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~  630 (649)
                      .+.  .+  +||+|||++++++||+|+++||+||+||+ +|++|+|.+||++|.+||+|. +|+|+|.+++..|+.+.++
T Consensus       402 ~~~--~~--~~~~tGD~~~~~~dG~l~~~GR~~d~i~~-~G~~i~p~~IE~~l~~~p~V~-~a~vvg~~~~~~g~~~~a~  475 (536)
T d1mdba_         402 SFT--ED--GFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVH-DAAMVSMPDQFLGERSCVF  475 (536)
T ss_dssp             HBC--TT--SCEEEEEEEEECTTSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEEEE
T ss_pred             ccc--cc--CccccCccccccCCCceecCCCcceEEEE-CCEEECHHHHHHHHHhCCCcc-EEEEEEEEcCCCCeEEEEE
Confidence            886  56  89999999999999999999999999997 599999999999999999999 9999999888777655444


Q ss_pred             h
Q 006354          631 Q  631 (649)
Q Consensus       631 ~  631 (649)
                      .
T Consensus       476 v  476 (536)
T d1mdba_         476 I  476 (536)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1.7e-57  Score=496.51  Aligned_cols=437  Identities=19%  Similarity=0.230  Sum_probs=349.3

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (649)
Q Consensus        82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (649)
                      +|++++|+++|+++||++|+.+.+          ++           +++||+||.++++++|++|+++|+++||+|+|+
T Consensus         2 ~ti~~~l~~~a~~~pd~~al~~~~----------~~-----------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~   60 (503)
T d3cw9a1           2 QTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAVV   60 (503)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEGG----------GT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECC----------CC-----------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEE
Confidence            699999999999999999998742          33           379999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (649)
Q Consensus       162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~  241 (649)
                      ++|+++|++++|||+++|++++|++|.++++++++++++++++++|++....... ....... ...++.          
T Consensus        61 ~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~-~~~~i~----------  128 (503)
T d3cw9a1          61 APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD-AIFQSGS-GARIIF----------  128 (503)
T ss_dssp             CCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHH-HHHHTTC-CCEEEE----------
T ss_pred             eCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHH-HHhhhcc-cccccc----------
Confidence            9999999999999999999999999999999999999999999999987643221 2222222 222332          


Q ss_pred             CCCCCCCCceEeehHHHHhcC----CCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC-CCCCC
Q 006354          242 GVSGGISNWTVSSFSEVEKLG----KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PNPGR  316 (649)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~  316 (649)
                                   +.++....    ...........++++++|+|||||||.||+|+++|+++.+.+......+ .....
T Consensus       129 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~  195 (503)
T d3cw9a1         129 -------------LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR  195 (503)
T ss_dssp             -------------HHHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSST
T ss_pred             -------------chhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccc
Confidence                         22222111    1122233456789999999999999999999999999999998887765 24456


Q ss_pred             CcEEEEccChHHHHHHHH-HHHHHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHH
Q 006354          317 SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK  392 (649)
Q Consensus       317 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~  392 (649)
                      .++++..+|+.|..+... .+.+...++.+++   +++..+...           +..++++.+..+|..+..+......
T Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~~~~~~~~~~~~~~  264 (503)
T d3cw9a1         196 HNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAAAAAH  264 (503)
T ss_dssp             TCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHHHHHH
T ss_pred             cccccccCccccccccccccccccccccccccccccChHHhhhh-----------hhhceeecccccccccccccccccc
Confidence            689999999998888776 5566777777777   333444444           8889999999999999887664322


Q ss_pred             HHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCc
Q 006354          393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP  472 (649)
Q Consensus       393 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~  472 (649)
                      ...                                             ....++||.+++||++++++....+...++..
T Consensus       265 ~~~---------------------------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~  299 (503)
T d3cw9a1         265 AGS---------------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGE  299 (503)
T ss_dssp             TCT---------------------------------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHCCSE
T ss_pred             ccc---------------------------------------------cccccceEEEEecccccccccccccccccccc
Confidence            111                                             11225899999999999999999999999999


Q ss_pred             cccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcc-ccccccccCCCccchhh
Q 006354          473 IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG-FNVTAGYFNNPGKTSEV  551 (649)
Q Consensus       473 l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g-~~v~~gY~~~~~~t~~~  551 (649)
                      +.+.||.||++..+...........+.+.+.+.....+.+ +.+..   ++.|+.|++++.+ +....+|+++++.|.+.
T Consensus       300 ~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~  375 (503)
T d3cw9a1         300 KVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG-GVDEI---VANGEEGELIVAASDSAFVGYLNQPQATAEK  375 (503)
T ss_dssp             EEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTS-CTTCB---CCTTCCEEEEEECCTTSCCCBTTCHHHHHHH
T ss_pred             ccccccccccceeeeeccccccccccccccccceeeeeec-ccCcc---cCCCccccccccccccccccccCChhhhHHH
Confidence            9999999999888777666555555555555555554444 33332   6788999887755 56777899999999998


Q ss_pred             hccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhh
Q 006354          552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQ  631 (649)
Q Consensus       552 f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~  631 (649)
                      |   .+  |||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|. +|+|+|.+++..|+...++.
T Consensus       376 ~---~~--g~~~TgD~g~~~~dG~l~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~p~V~-~~~v~~~~~~~~g~~~~a~v  448 (503)
T d3cw9a1         376 L---QD--GWYRTSDVAVWTPEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVT-EVVVIGLADQRWGQSVTACV  448 (503)
T ss_dssp             E---ET--TEEEEEEEEEECTTSCEEEEEESSCCEEE-TTEEECHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEEEEE
T ss_pred             h---cC--CceecccccccccCCeEEeCCCcCCeEEE-CCEEECHHHHHHHHHhCCCcc-EEEEEEEECCCCCeEEEEEE
Confidence            8   56  89999999999999999999999999998 599999999999999999999 99999998887765554443