Citrus Sinensis ID: 006365

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
MLKPQVHQPQSIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR
ccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEcccccEEEEEEEEEEEEcccccccccccccccccccccccccEEEEEEEcccccccccccccHHHHcccccccccccEEEEEEEEEcccccccEEEEEEEccccEEEEEEEEEEccccccEEEEEcccEEccccccccEEEEcccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccEEEEccEEEEEEccccccccEEEEEccccccccccccEEEcccccccccHHHHHHHHHHHccccccHHHHHcccccccccHHHHHHHcccccccccccccccccccHHccccHHHHHHccccccEEEEcccccHHHHHHHHHHHHccccccccccHHHHHcc
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEcccccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccHHHHHccccccccccEEEEEEEEEccccccccEEEEEEccccEEEEEEEEEEccccccEEEEEEEEEcEHHHccccEEEEccccccHHHccHHHHHHHHHHHHHHHcccccccccccccccEEcEcccccHHHcHHHccccEcccccccccEEcccccEcccccccEcccccccccHHHccccccHHHcHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHcHcccHHHHcEEEcccEEEccccHHHcccccHHHcHHHHHHHHHHcccccccEEccccccccccccccccccccccccccccccccccccHHHHHHcccEEEEEcHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEEcccccHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHcccccccHHcccHHHHcc
mlkpqvhqpqsikplfplskpflhgnyghafrpvqststlfkgspklrigsvprntIKAIATSTEKSIKVKAVVTVkptvggflsnisldqglddlgDLFGKSLLLELVSaeldpktgldksTIQDYARKigadgdgnmqyesefevpsgfgeIGAILVENEHHKEMYLKDivldglpngpvnvtcnswlhskhdnkqkrvfftnklylpsqtpdglkrYRAEELTIlrgngqgerktydriydydvyndlgdpdkkpelarpvlggkqnpyprrcrtgrprcdtdqfsekregnfyvprdeaFSEVKQLTFSAKTVYSVLHALVPsletafvdpdlgfpyFSAIDALFnegvnlpplkqegfwnTLLPRLVKAIEDTgdnillfetpetmdrdkffwfrdeefsrqtlaglnpysirlitewplkstldpeiygppesaiTTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKsttlygsrtiffltpagtlrpiaieltrppmngkpqwkqvflpswhstECWLWKLAKAHVLAHDAGYHQLVSHWLrthcctepyviATNRqlsvmhpiyrlldphfryTMEINGLARQALVnadgiiessfspgkysmeFSSVAydkqwrfdhealpkdlisr
mlkpqvhqpqsikplfPLSKPFLHGNYGHAFRPVQSTSTLFkgspklrigsvprnTIKAIatsteksikvkaVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVsaeldpktgldkstIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKlylpsqtpdglkryRAEEltilrgngqgerktydrIYDYDVyndlgdpdkkpelarpvlggkqnpyprrcrtgrprcdtdqfsekregnfyvprdEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGdnillfetpetmdrDKFFWFRDEEFSrqtlaglnpySIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTiffltpagtlrPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR
MLKPQVHQPQSIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIkvkavvtvkptvGGFLSNISldqglddlgdlfgkslllelVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR
***************FPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGL***TIQDYARKIG********YESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL********************************************FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDH**********
***********************************************************************AVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLE********************ARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELT*********RKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGR**CD******KREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAI***************VFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR
**********SIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR
************KPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLKPQVHQPQSIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query648 2.2.26 [Sep-21-2011]
O24370 899 Linoleate 13S-lipoxygenas N/A no 0.981 0.707 0.634 0.0
Q84YK8 941 Probable lipoxygenase 8, yes no 0.884 0.608 0.589 0.0
P38418 896 Lipoxygenase 2, chloropla yes no 0.879 0.636 0.560 0.0
P38419 924 Lipoxygenase 7, chloropla no no 0.876 0.614 0.580 0.0
Q8GSM2 896 Lipoxygenase 2.3, chlorop N/A no 0.908 0.657 0.56 0.0
P93184 936 Lipoxygenase 2.1, chlorop N/A no 0.908 0.629 0.543 1e-178
Q8GSM3 932 Lipoxygenase 2.2, chlorop N/A no 0.884 0.614 0.519 1e-166
Q9FNX8 926 Lipoxygenase 4, chloropla no no 0.921 0.644 0.472 1e-163
Q9LNR3 919 Lipoxygenase 3, chloropla no no 0.887 0.625 0.483 1e-161
Q8H016 918 Probable lipoxygenase 6 O no no 0.919 0.649 0.468 1e-160
>sp|O24370|LOX21_SOLTU Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1 Back     alignment and function desciption
 Score =  850 bits (2196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/659 (63%), Positives = 516/659 (78%), Gaps = 23/659 (3%)

Query: 1   MLKPQVHQP-QSIKPLFPL--SKPFLHGNYGHAFRPVQSTSTLF----KGSPKLRIGSVP 53
           MLKPQ+ Q  QS K L P   + P    ++     P+   +  F    K + ++      
Sbjct: 1   MLKPQLQQSSQSTKALIPSWNTNPLFLASF-----PINILNKNFRLKKKNNFRVHHNYNG 55

Query: 54  RNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAEL 113
            +T KA+ +STEK+  VKAVVTV+  V     N++L +GLDD+GDL GKSLLL +V+AEL
Sbjct: 56  ASTTKAVLSSTEKATGVKAVVTVQKQV-----NLNLSRGLDDIGDLLGKSLLLWIVAAEL 110

Query: 114 DPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIV 173
           D KTG++K  I+ YA + G D DG+  YE++F +P  FGE+GAIL+ENEHHKEMY+K+IV
Sbjct: 111 DHKTGIEKPGIRAYAHR-GRDVDGDTHYEADFVIPQDFGEVGAILIENEHHKEMYVKNIV 169

Query: 174 LDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQ 233
           +DG  +G V +TCNSW+HSK DN  KR+FFTNK YLPSQTP G+ R R EEL  LRG+G 
Sbjct: 170 IDGFVHGKVEITCNSWVHSKFDNPDKRIFFTNKSYLPSQTPSGVSRLREEELVTLRGDGI 229

Query: 234 GERKTYDRIYDYDVYNDLGDPDKKPELA-RPVLGGKQNPYPRRCRTGRPRCDTDQFSEKR 292
           GERK ++RIYDYDVYNDLG+ D   + A RPVLGGK+ PYPRRC+TGRPR   D  SE R
Sbjct: 230 GERKVFERIYDYDVYNDLGEADSNNDDAKRPVLGGKELPYPRRCKTGRPRSKKDPLSETR 289

Query: 293 EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEG 352
               YVPRDEAFSEVK + FS  TVYSVLHA+VP+LE+   DP+LGFP+F AID+LFN G
Sbjct: 290 STFVYVPRDEAFSEVKSVAFSGNTVYSVLHAVVPALESVVTDPNLGFPHFPAIDSLFNVG 349

Query: 353 VNLPPL--KQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLA 410
           V+LP L  K+ G +N ++PRL+KAI DT  ++LLFE+P+ + RDKF WFRD EF+RQTLA
Sbjct: 350 VDLPGLGDKKSGLFN-VVPRLIKAISDTRKDVLLFESPQLVQRDKFSWFRDVEFARQTLA 408

Query: 411 GLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDY 470
           GLNPYSIRL+TEWPL+S LDP++YGPPES IT ELIEKEIG  ++VE+A++QKKLFILDY
Sbjct: 409 GLNPYSIRLVTEWPLRSKLDPKVYGPPESEITKELIEKEIGNYMTVEQAVQQKKLFILDY 468

Query: 471 HDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPS- 529
           HDL LPYV KV +LK + LYGSRTIFFLTP GTL+P+AIELTRPP++ KPQWK+V+ P+ 
Sbjct: 469 HDLLLPYVNKVNELKGSMLYGSRTIFFLTPQGTLKPLAIELTRPPVDDKPQWKEVYSPND 528

Query: 530 WHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDP 589
           W++T  WLWKLAKAHVL+HD+GYHQLVSHWLRTHCCTEPY+IA+NRQLS MHPIYRLL P
Sbjct: 529 WNATGAWLWKLAKAHVLSHDSGYHQLVSHWLRTHCCTEPYIIASNRQLSAMHPIYRLLHP 588

Query: 590 HFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 648
           HFRYTMEIN LAR+AL+NA+G+IESSF PGKY++E SS+AY  +WRFD EALP++LISR
Sbjct: 589 HFRYTMEINALAREALINANGVIESSFFPGKYAIELSSIAYGAEWRFDQEALPQNLISR 647
Plant lipoxygenase involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence. May not be involved in the bulk production of jasmonate upon wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. Linolenic acid is the preferred substrate, before linoleic and arachidonic acids. Has also some activity with phosphatidylglycerol, but not with galactolipids.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 1EC: 2
>sp|Q84YK8|LOXC2_ORYSJ Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1 Back     alignment and function description
>sp|P38418|LOX2_ARATH Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1 Back     alignment and function description
>sp|P38419|LOXC1_ORYSJ Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2 Back     alignment and function description
>sp|Q8GSM2|LOX23_HORVU Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1 Back     alignment and function description
>sp|P93184|LOX21_HORVU Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1 Back     alignment and function description
>sp|Q8GSM3|LOX22_HORVU Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FNX8|LOX4_ARATH Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNR3|LOX3_ARATH Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1 Back     alignment and function description
>sp|Q8H016|LOX6_ORYSJ Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query648
224053392 897 predicted protein [Populus trichocarpa] 0.993 0.717 0.714 0.0
71999169 898 lipoxygenase LOX1 [Populus deltoides] 0.995 0.718 0.691 0.0
213876486 900 lipoxygenase [Camellia sinensis] 0.989 0.712 0.696 0.0
71999171 903 lipoxygenase LOX2 [Populus deltoides] 0.996 0.715 0.695 0.0
255544764 900 lipoxygenase, putative [Ricinus communis 0.995 0.716 0.694 0.0
308943877 901 lipoxygenase [Camellia sinensis] 0.986 0.709 0.689 0.0
229554825 901 lipoxygenase [Camellia sinensis] 0.986 0.709 0.688 0.0
32454712 900 lipoxygenase, partial [Nicotiana attenua 0.990 0.713 0.665 0.0
18461098 895 lipoxygenase [Citrus jambhiri] 0.969 0.701 0.705 0.0
312837045 889 lipoxygenase [Vitis hybrid cultivar] 0.995 0.725 0.664 0.0
>gi|224053392|ref|XP_002297796.1| predicted protein [Populus trichocarpa] gi|222845054|gb|EEE82601.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/649 (71%), Positives = 547/649 (84%), Gaps = 5/649 (0%)

Query: 1   MLKPQVHQPQ-SIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKA 59
           MLKPQ+HQ   S K  F L KPF+HG+ GHA  PV S S   K + K+R+G     +IK+
Sbjct: 1   MLKPQLHQSHLSTKIPFLLPKPFIHGS-GHASFPVYSRSLSTKANKKVRVG-YKHGSIKS 58

Query: 60  IATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGL 119
           IA+ T++S  VKAVVTVK TV  F + I +++GLDD  DLFGK+LLLELVSAELDPKTGL
Sbjct: 59  IASVTQQSTDVKAVVTVKQTVVDFWTEIGIERGLDDFTDLFGKTLLLELVSAELDPKTGL 118

Query: 120 DKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN 179
           +K +I+ YA KI  +G+ +++YE++F VP  FGEIGAI VENEHHKEMYL D+VLDG P 
Sbjct: 119 EKPSIRKYAHKIDHEGE-DIKYEADFVVPPDFGEIGAIFVENEHHKEMYLHDVVLDGFPT 177

Query: 180 GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTY 239
           GPV+VTC+SW+HSK DNK+KR+FFTNK YLPSQTP G++R R EEL +LRGNGQG+RK  
Sbjct: 178 GPVHVTCDSWIHSKFDNKKKRLFFTNKSYLPSQTPSGIRRLREEELVLLRGNGQGQRKAG 237

Query: 240 DRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVP 299
           DRIYDYDVYND+G+PDKKPELARPVLGGK++PYPRRCRTGRPRC+TD  SEKR   FYVP
Sbjct: 238 DRIYDYDVYNDIGNPDKKPELARPVLGGKEHPYPRRCRTGRPRCETDPSSEKRVSAFYVP 297

Query: 300 RDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLK 359
           RDEAFSEVKQLTFSAKT+YS+ HAL+PS+     D +LGFPY +AID+LF+EG+ +PPL 
Sbjct: 298 RDEAFSEVKQLTFSAKTLYSLFHALIPSIGNVIDDANLGFPYMTAIDSLFSEGIEMPPLT 357

Query: 360 QEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRL 419
           +EGFW  ++PRL K I   GD +L FE P+ M+RDKFFWF+DEEF+RQTLAGLNPYSI+ 
Sbjct: 358 KEGFWKEVMPRLFKVIAGGGD-VLRFEVPKPMERDKFFWFKDEEFARQTLAGLNPYSIKS 416

Query: 420 ITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVE 479
           +TEWPLKS LDPEIYGPPESAIT+EL+E EIGG+  V++AI++KKLFILDYHDL LP+V 
Sbjct: 417 VTEWPLKSELDPEIYGPPESAITSELLEAEIGGVTRVDKAIREKKLFILDYHDLLLPFVS 476

Query: 480 KVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWK 539
           KVR++K TTLYGSRT+FFLTP GTLRP+AIELTRPPM+GKPQWKQVF P +HST CWLW+
Sbjct: 477 KVREIKGTTLYGSRTVFFLTPEGTLRPLAIELTRPPMDGKPQWKQVFTPCYHSTGCWLWR 536

Query: 540 LAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEING 599
           LAKAHVLAHD+G+HQLVSHWLRTHC TEPY+IATNRQLSVMHPIYRLL PHFRYTMEIN 
Sbjct: 537 LAKAHVLAHDSGFHQLVSHWLRTHCVTEPYIIATNRQLSVMHPIYRLLHPHFRYTMEINA 596

Query: 600 LARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 648
           LAR++L+NA GIIE+SFSPGKYSME  S AYDK WRFDHEALP DLISR
Sbjct: 597 LARESLINAGGIIETSFSPGKYSMEICSAAYDKLWRFDHEALPNDLISR 645

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|71999169|gb|AAZ57444.1| lipoxygenase LOX1 [Populus deltoides] Back     alignment and taxonomy information
>gi|213876486|gb|ACJ54281.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|71999171|gb|AAZ57445.1| lipoxygenase LOX2 [Populus deltoides] Back     alignment and taxonomy information
>gi|255544764|ref|XP_002513443.1| lipoxygenase, putative [Ricinus communis] gi|223547351|gb|EEF48846.1| lipoxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|308943877|gb|ADO51752.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|229554825|gb|ACQ76787.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|32454712|gb|AAP83137.1| lipoxygenase, partial [Nicotiana attenuata] Back     alignment and taxonomy information
>gi|18461098|dbj|BAB84352.1| lipoxygenase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|312837045|dbj|BAJ34928.1| lipoxygenase [Vitis hybrid cultivar] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query648
TAIR|locus:2096915 896 LOX2 "lipoxygenase 2" [Arabido 0.817 0.591 0.572 1.3e-173
UNIPROTKB|P38419 924 CM-LOX1 "Lipoxygenase 7, chlor 0.833 0.584 0.587 1.6e-173
TAIR|locus:2030215 926 LOX4 "lipoxygenase 4" [Arabido 0.827 0.578 0.490 7.3e-146
TAIR|locus:2018848 919 LOX3 "lipoxygenase 3" [Arabido 0.827 0.583 0.489 7.5e-144
TAIR|locus:2008808 917 LOX6 "lipoxygenase 6" [Arabido 0.827 0.584 0.474 1.6e-134
TAIR|locus:2011030 859 LOX1 "lipoxygenase 1" [Arabido 0.819 0.618 0.439 4.6e-112
TAIR|locus:2087837 886 LOX5 [Arabidopsis thaliana (ta 0.771 0.564 0.436 3.8e-110
UNIPROTKB|P29250 870 LOX1.1 "Linoleate 9S-lipoxygen 0.782 0.582 0.425 4.9e-101
ZFIN|ZDB-GENE-060623-19 676 zgc:136911 "zgc:136911" [Danio 0.367 0.352 0.329 2e-22
ZFIN|ZDB-GENE-050522-330 676 zgc:110251 "zgc:110251" [Danio 0.313 0.300 0.343 7.1e-21
TAIR|locus:2096915 LOX2 "lipoxygenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1687 (598.9 bits), Expect = 1.3e-173, P = 1.3e-173
 Identities = 309/540 (57%), Positives = 396/540 (73%)

Query:   113 LDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDI 172
             +  KT   + T++DYA+++ A+     +YE EFE+P  FG +GAI ++N++H++++LK +
Sbjct:   111 ISAKTD-QRITVEDYAQRVWAEAPDE-KYECEFEMPEDFGPVGAIKIQNQYHRQLFLKGV 168

Query:   173 VLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNG 232
              L  LP G +  TC SW+  K  +  KR+FF++K YLPSQTP+ LK+YR EEL  L+G  
Sbjct:   169 ELK-LPGGSITFTCESWVAPKSVDPTKRIFFSDKSYLPSQTPEPLKKYRKEELETLQGKN 227

Query:   233 Q---GERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFS 289
             +   GE   ++RIYDYDVYND+GDPD  PELARPV+GG  +PYPRRC+TGR  C+TD  S
Sbjct:   228 REEVGEFTKFERIYDYDVYNDVGDPDNDPELARPVIGGLTHPYPRRCKTGRKPCETDPSS 287

Query:   290 EKREGN-FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDAL 348
             E+R G  FYVPRDE FS  K  +F+ K V + L ++ P +E+  + P   FP+F AI  L
Sbjct:   288 EQRYGGEFYVPRDEEFSTAKGTSFTGKAVLAALPSIFPQIESVLLSPQEPFPHFKAIQNL 347

Query:   349 FNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQT 408
             F EG+ LP  K  G    LLPR++KA+ +  D+IL F+ P  ++RD+F W RD+EF+RQT
Sbjct:   348 FEEGIQLP--KDAGLL-PLLPRIIKALGEAQDDILQFDAPVLINRDRFSWLRDDEFARQT 404

Query:   409 LAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFIL 468
             LAGLNPYSI+L+ EWPL S LDP +YG P S IT E++E+E+ G ++V+EA+K K+LF+L
Sbjct:   405 LAGLNPYSIQLVEEWPLISKLDPAVYGDPTSLITWEIVEREVKGNMTVDEALKNKRLFVL 464

Query:   469 DYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLP 528
             DYHDL LPYV KVR+L +TTLY SRT+FFL+   TLRP+AIELT PP   KPQWKQVF P
Sbjct:   465 DYHDLLLPYVNKVRELNNTTLYASRTLFFLSDDSTLRPVAIELTCPPNINKPQWKQVFTP 524

Query:   529 SWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLD 588
              + +T CWLW LAK H ++HDAGYHQL+SHWLRTH CTEPY+IA NRQLS MHPIYRLL 
Sbjct:   525 GYDATSCWLWNLAKTHAISHDAGYHQLISHWLRTHACTEPYIIAANRQLSAMHPIYRLLH 584

Query:   589 PHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 648
             PHFRYTMEIN  ARQ+LVN  GIIE+ F PGKY++E SS  Y K WRFD E LP DLI R
Sbjct:   585 PHFRYTMEINARARQSLVNGGGIIETCFWPGKYALELSSAVYGKLWRFDQEGLPADLIKR 644
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0005737 "cytoplasm" evidence=IDA
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0080027 "response to herbivore" evidence=IEP
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009617 "response to bacterium" evidence=IEP
GO:0016165 "lipoxygenase activity" evidence=IMP;IDA
GO:0009620 "response to fungus" evidence=IEP
GO:0034440 "lipid oxidation" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0000096 "sulfur amino acid metabolic process" evidence=RCA
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA
GO:0006766 "vitamin metabolic process" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA
GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA
GO:0009106 "lipoate metabolic process" evidence=RCA
GO:0009108 "coenzyme biosynthetic process" evidence=RCA
GO:0009117 "nucleotide metabolic process" evidence=RCA
GO:0009269 "response to desiccation" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009416 "response to light stimulus" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=IMP;RCA;TAS
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0015994 "chlorophyll metabolic process" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0019216 "regulation of lipid metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019748 "secondary metabolic process" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0031408 "oxylipin biosynthetic process" evidence=RCA
GO:0044272 "sulfur compound biosynthetic process" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
GO:0009414 "response to water deprivation" evidence=TAS
GO:0051707 "response to other organism" evidence=TAS
UNIPROTKB|P38419 CM-LOX1 "Lipoxygenase 7, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2030215 LOX4 "lipoxygenase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018848 LOX3 "lipoxygenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008808 LOX6 "lipoxygenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011030 LOX1 "lipoxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087837 LOX5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P29250 LOX1.1 "Linoleate 9S-lipoxygenase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060623-19 zgc:136911 "zgc:136911" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-330 zgc:110251 "zgc:110251" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84YK8LOXC2_ORYSJ1, ., 1, 3, ., 1, 1, ., 1, 20.58940.88420.6089yesno
P38418LOX2_ARATH1, ., 1, 3, ., 1, 1, ., 1, 20.56040.87960.6361yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.13.11LOW CONFIDENCE prediction!
3rd Layer1.13.11.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I000375
hypothetical protein; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding (By similarity) (897 aa)
(Populus trichocarpa)
Predicted Functional Partners:
CYP74A1
cytochrome P450 allene oxide synthase (EC-4.2.1.92) (526 aa)
     •• 0.902
gw1.XVIII.245.1
SubName- Full=Putative uncharacterized protein; (138 aa)
     •  0.899
gw1.XVI.1394.1
hypothetical protein (823 aa)
     •  0.899
gw1.40.286.1
phospholipase A1 (EC-3.1.1.32) (357 aa)
     •  0.899
fgenesh4_pg.C_LG_II001255
phospholipase A1 (EC-3.1.1.32) (367 aa)
     •  0.899
eugene3.00060391
hypothetical protein (856 aa)
     •  0.899
CYP74B7
cytochrome P450 fatty acid hydroperoxide lyase (492 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_VIII0936
SubName- Full=Putative uncharacterized protein; (642 aa)
     •  0.899
grail3.0064002701
SubName- Full=Putative uncharacterized protein; (382 aa)
      • 0.502

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
PLN02305 918 PLN02305, PLN02305, lipoxygenase 0.0
PLN02264 919 PLN02264, PLN02264, lipoxygenase 0.0
pfam00305 667 pfam00305, Lipoxygenase, Lipoxygenase 0.0
PLN02337 866 PLN02337, PLN02337, lipoxygenase 0.0
cd01751137 cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipox 2e-54
smart00308105 smart00308, LH2, Lipoxygenase homology 2 (beta bar 6e-18
pfam01477115 pfam01477, PLAT, PLAT/LH2 domain 2e-11
>gnl|CDD|215174 PLN02305, PLN02305, lipoxygenase Back     alignment and domain information 
 Score =  653 bits (1685), Expect = 0.0
 Identities = 300/594 (50%), Positives = 401/594 (67%), Gaps = 10/594 (1%)

Query: 62  TSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK 121
           +     I V+AV+T++  +   ++    DQ  +   +  G+ +L++LVS E+DP TG  K
Sbjct: 76  SKYAGGIDVRAVITIRKKIKEKITEKFEDQ-WEYFMNGIGQGILIQLVSEEIDPVTGSGK 134

Query: 122 STIQDYARKIGADGDGN---MQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLP 178
           S ++   R        +   ++Y ++F VP  FG+ GA+LV N H KE YL +IV+ G  
Sbjct: 135 S-VESSVRGWLPKPSNDPHIVEYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFD 193

Query: 179 NGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKT 238
           +GP+    N+W+HS+ DN + R+ F N+ YLPSQTP G+K  R E+L  LRGNG+GERK 
Sbjct: 194 DGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLRREDLLSLRGNGKGERKP 253

Query: 239 YDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKR---EGN 295
           +DRIYDY  YNDLG+PDK  +LARPVLGG++ PYPRRCRTGRP    D   E R      
Sbjct: 254 HDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHP 313

Query: 296 FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNL 355
            YVPRDE F E+K+ TFSA  + ++LH L+PS+  A    D+ F  FS ID L+N+G+ L
Sbjct: 314 VYVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILL 373

Query: 356 PPLK-QEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNP 414
              + ++   N  L   +K +    + +L ++ P  + RD+F W RD EF+RQ LAG+NP
Sbjct: 374 KTEEPKDIGLNPFLGNFMKQVLSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNP 433

Query: 415 YSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLF 474
            +I ++ E+P+ S LDP +YGPPESA+T ELIE+E+ GM +VE+AI++K+LFILDYHD+ 
Sbjct: 434 VNIEILKEFPILSKLDPAVYGPPESALTEELIERELEGM-TVEKAIEEKRLFILDYHDML 492

Query: 475 LPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTE 534
           LP++EK+  L     Y SRT+FF + AG LRPIAIEL+ PP    P  K V+     +T 
Sbjct: 493 LPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATT 552

Query: 535 CWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYT 594
            W+WKLAKAHV ++DAG HQLV+HWLRTH C EPY+IAT+RQLS MHPIY+LL PH RYT
Sbjct: 553 HWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYT 612

Query: 595 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 648
           +EIN LARQ+L+N  GIIE+ FSPGKY+ME SS AY   WRFD EALP DLI R
Sbjct: 613 LEINALARQSLINGGGIIEACFSPGKYAMELSSAAYKSMWRFDMEALPADLIRR 666

Length = 918
>gnl|CDD|215148 PLN02264, PLN02264, lipoxygenase Back     alignment and domain information
>gnl|CDD|215847 pfam00305, Lipoxygenase, Lipoxygenase Back     alignment and domain information
>gnl|CDD|215193 PLN02337, PLN02337, lipoxygenase Back     alignment and domain information
>gnl|CDD|238849 cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipoxygenase related proteins Back     alignment and domain information
>gnl|CDD|214608 smart00308, LH2, Lipoxygenase homology 2 (beta barrel) domain Back     alignment and domain information
>gnl|CDD|216521 pfam01477, PLAT, PLAT/LH2 domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 648
PLN02305 918 lipoxygenase 100.0
PLN02264 919 lipoxygenase 100.0
PLN02337 866 lipoxygenase 100.0
PF00305 667 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Li 100.0
cd01751137 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase re 100.0
smart00308105 LH2 Lipoxygenase homology 2 (beta barrel) domain. 99.26
PF01477113 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxyg 98.89
cd00113116 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin 98.7
cd02899109 PLAT_SR Scavenger receptor protein. A subfamily of 98.24
cd01756120 PLAT_repeat PLAT/LH2 domain repeats of family of p 97.82
cd01753113 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a u 97.8
cd01752120 PLAT_polycystin PLAT/LH2 domain of polycystin-1 li 97.54
cd01757114 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 inter 97.51
cd01754129 PLAT_plant_stress PLAT/LH2 domain of plant-specifi 97.08
>PLN02305 lipoxygenase Back     alignment and domain information 
Probab=100.00  E-value=2.2e-188  Score=1585.82  Aligned_cols=578  Identities=51%  Similarity=0.925  Sum_probs=543.4

Q ss_pred             eeEEEEEEEEEee-cccCcccccccccccchhhhccCCcEEEEEEecccCCCCCCcc---eeccccccccCCCCCCceEE
Q 006365           66 KSIKVKAVVTVKP-TVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK---STIQDYARKIGADGDGNMQY  141 (648)
Q Consensus        66 ~~~~~~~~v~~~~-~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvs~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~y  141 (648)
                      ...+|||+||||+ +++++++..  ++.+|+++|++||+|+|||||++++|+||+||   ++|++|+++ +...++++.|
T Consensus        80 ~~~~i~~~v~~~~~~~~~~~~~~--~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~-~~~~~~~~~~  156 (918)
T PLN02305         80 GGIDVRAVITIRKKIKEKITEKF--EDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPK-PSNDPHIVEY  156 (918)
T ss_pred             cCCeEEEEEEEEeecccchhhcc--cchhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccC-CCCCCCceEE
Confidence            3469999999976 666766543  68999999999999999999999999998554   899999987 3433677899


Q ss_pred             EEEEeecCCCCceeEEEEEecCCCceeeeeEEEecCCCCcEEEEecccccCCCCCCcceEEEeCcccCCCCCCHHHHHHH
Q 006365          142 ESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYR  221 (648)
Q Consensus       142 ~~~f~~~~~fG~pgAv~v~n~h~~e~fl~~i~l~~~p~g~i~F~CnsWv~~~~~~~~~riff~n~ayLp~~tp~~L~~~R  221 (648)
                      +++|+||++||+||||+|+|+|++||||++|+|+++|+|+|||+||||||+.++|+++||||+||+|||++||++|++||
T Consensus       157 ~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~~R  236 (918)
T PLN02305        157 AADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLR  236 (918)
T ss_pred             EEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCCCCccccCeeeeccccCCCCCCCCCCccccccCCCCCCCCCcccCCCCCCCCCCCCccCCCC---CCcc
Q 006365          222 AEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREG---NFYV  298 (648)
Q Consensus       222 e~EL~~lRG~g~g~rk~~dRiYdydvYnDlG~Pd~~~~~~rpvlGg~~~PyPRR~RTgR~~~~~dp~~e~r~~---~~yv  298 (648)
                      |+||++|||||+||||+||||||||||||||+||++++++||||||++|||||||||||+|+++||++|||..   .+||
T Consensus       237 e~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~Yv  316 (918)
T PLN02305        237 REDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPVYV  316 (918)
T ss_pred             HHHHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCcCC
Confidence            9999999999999999999999999999999999999999999999669999999999999999999999954   4799


Q ss_pred             CCCCccChhhhccchhhhHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCCCCCCccccccccch-hH-HHHHHhh
Q 006365          299 PRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LP-RLVKAIE  376 (648)
Q Consensus       299 PrDe~F~~~K~~dF~~~~lk~~~~~~lp~l~~~~~~~~~~f~sf~Di~~Ly~~g~~lp~~~~~~~~~~~-~~-~i~e~~~  376 (648)
                      ||||+|+++|++||+++++|+++|.++|+|+++++.+..+|+||+||++||++|++||.... +..+.. +| .+.+.++
T Consensus       317 PrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~~-~~~~~~p~~~~~~~~i~  395 (918)
T PLN02305        317 PRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEEP-KDIGLNPFLGNFMKQVL  395 (918)
T ss_pred             CCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchhh-hhhhcCCchHHHHHHhh
Confidence            99999999999999999999999999999999998889999999999999999999997321 222222 32 4444458


Q ss_pred             ccCCccccccCccccccccccccccHHHHHHHhcCCCccccccccCCCCCCCCCCCcCCCCCCCCcHHHHHHhhCCcccH
Q 006365          377 DTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISV  456 (648)
Q Consensus       377 ~~~~~~lkfp~P~v~~~d~~~W~~DeeFgrQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yG~~~s~It~e~i~~~L~g~~tl  456 (648)
                      ++++.+||||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+|+|+||+|||+..|+| +||
T Consensus       396 ~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G-~Tl  474 (918)
T PLN02305        396 SVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG-MTV  474 (918)
T ss_pred             hcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC-CcH
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHHHhcCcEEEeccCcccCchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCCCCCCCCcceEEeCCCCCCCch
Q 006365          457 EEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECW  536 (648)
Q Consensus       457 eeal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dg~L~PIAIqL~~~~~~~~~~~~~VftP~d~~~~~~  536 (648)
                      +|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++++++.+++||||.++++++|
T Consensus       475 eeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~~w  554 (918)
T PLN02305        475 EKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATTHW  554 (918)
T ss_pred             HHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCCch
Confidence            99999999999999999999999999999999999999999999999999999999998877777789999987777899


Q ss_pred             hHHHHHHHhhhcchhhHHHHHHhhcccccchhHHHHhccCCCCccchhhhcccchhccccccHHHHhhcccCCceeeccc
Q 006365          537 LWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSF  616 (648)
Q Consensus       537 ~W~LAK~~v~~aD~~~HqlisHllrTHlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LIn~gGiie~~f  616 (648)
                      .|+||||||++||++|||+|+||++||+||||||||||||||++|||||||+||||+||+||++||++|||+||+||++|
T Consensus       555 ~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiie~~f  634 (918)
T PLN02305        555 IWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEACF  634 (918)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHhccCcccCCCCCchhhhcC
Q 006365          617 SPGKYSMEFSSVAYDKQWRFDHEALPKDLISR  648 (648)
Q Consensus       617 ~~G~~~~elss~~Yk~~w~F~~~~LP~DL~~R  648 (648)
                      ++|+|+|||++++|++.|+|++++||+||++|
T Consensus       635 spg~~~~elss~aYk~~w~Fd~~~LP~DL~kR  666 (918)
T PLN02305        635 SPGKYAMELSSAAYKSMWRFDMEALPADLIRR  666 (918)
T ss_pred             ccchhHHHHHHHHHHhcCcCccccCHHHHHHc
Confidence            99999999999999988999999999999998

>PLN02264 lipoxygenase Back     alignment and domain information
>PLN02337 lipoxygenase Back     alignment and domain information
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1 Back     alignment and domain information
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins Back     alignment and domain information
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain Back     alignment and domain information
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1 Back     alignment and domain information
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain Back     alignment and domain information
>cd02899 PLAT_SR Scavenger receptor protein Back     alignment and domain information
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function Back     alignment and domain information
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase Back     alignment and domain information
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins Back     alignment and domain information
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family Back     alignment and domain information
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
2iuj_A 853 Crystal Structure Of Soybean Lipoxygenase-B Length 1e-133
2iuk_A 864 Crystal Structure Of Soybean Lipoxygenase-D Length 1e-126
3pzw_A 839 Soybean Lipoxygenase-1 - Re-Refinement Length = 839 1e-125
1fgm_A 839 Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Leng 1e-125
2sbl_B 839 The Three-Dimensional Structure Of An Arachidonic A 1e-125
1fgr_A 839 Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Leng 1e-125
1y4k_A 839 Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Leng 1e-125
1fgt_A 839 Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Leng 1e-125
3bnd_A 839 Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 1e-125
1ik3_A 857 Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydrope 1e-125
3bnb_A 839 Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 1e-125
1fgq_A 839 Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Leng 1e-125
3bne_A 839 Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 1e-124
1fgo_A 839 Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Leng 1e-124
3bnc_A 839 Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 1e-124
1rov_A 857 Lipoxygenase-3 Treated With Cumene Hydroperoxide Le 1e-123
3v98_A 691 S663d Stable-5-Lox Length = 691 3e-24
3o8y_A 691 Stable-5-Lipoxygenase Length = 691 3e-24
3v92_B 691 S663a Stable-5-Lox Length = 691 3e-24
3vf1_A 698 Structure Of A Calcium-Dependent 11r-Lipoxygenase S 2e-20
3dy5_A 1066 Allene Oxide Synthase 8r-Lipoxygenase From Plexaura 1e-19
3fg1_A 696 Crystal Structure Of Delta413-417:gs Lox Length = 6 2e-19
2fnq_A 699 Insights From The X-Ray Crystal Structure Of Coral 3e-19
3fg4_A 696 Crystal Structure Of Delta413-417:gs I805a Lox Leng 4e-19
3rde_A 573 Crystal Structure Of The Catalytic Domain Of Porcin 5e-19
3fg3_A 696 Crystal Structure Of Delta413-417:gs I805w Lox Leng 9e-19
1lox_A 662 Rabbit Reticulocyte 15-Lipoxygenase Length = 662 4e-18
2p0m_A 662 Revised Structure Of Rabbit Reticulocyte 15s-Lipoxy 5e-18
3d3l_A 541 The 2.6 A Crystal Structure Of The Lipoxygenase Dom 1e-15
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B Length = 853 Back     alignment and structure 
Iteration: 1

 Score =  473 bits (1218), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/513 (48%), Positives = 331/513 (64%), Gaps = 10/513 (1%)
Query: 141 YESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQK 199
           Y+++F+  S FG  GA  ++N    E YLK ++L+ +PN G ++  CNSW+++    K  
Sbjct: 95  YDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTD 154
Query: 200 RVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPE 259
           R+FF N  YLPS+TP  L +YR EEL  +RG+G GERK +DRIYDYDVYNDLGDPDK  +
Sbjct: 155 RIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGDPDKGEK 214
Query: 260 LARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYS 319
            ARPVLGG   PYPRR RTGR +   D  SEK     Y+PRDEAF  +K   F A  + S
Sbjct: 215 YARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPGDFVYLPRDEAFGHLKSSDFLAYGIKS 274
Query: 320 VLHALVPSLETAFVDP--DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIED 377
           V   ++P L  AF      L F  F+ +  L+  GV LP         T +P + +    
Sbjct: 275 VAQDVLPVLTDAFDGNLLSLDFDNFAEVRKLYEGGVTLPTNFLSNI--TPIPIIKELFRT 332
Query: 378 TGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPP 437
            G+  L +  P+ M  DK  W  DEEF+R+T+AGLNP  I++I E+PL S LD + YG  
Sbjct: 333 DGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDH 392
Query: 438 ESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFF 497
              IT E +E  +GG+ +VE+AI+ KKLFILD+HD  +PY+ K+    +T  Y +RTIFF
Sbjct: 393 TCIITKEHLEPNLGGL-TVEQAIQNKKLFILDHHDYLIPYLRKINA-NTTKTYATRTIFF 450
Query: 498 LTPAGTLRPIAIELTRPPMNGKPQW--KQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQL 555
           L   GTL P+AIEL++P   G+      +V++PS    E ++W LAKA+V+ +DA YHQ+
Sbjct: 451 LKNDGTLTPLAIELSKPHPQGEEYGPVSEVYVPSSEGVEAYIWLLAKAYVVVNDACYHQI 510
Query: 556 VSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESS 615
           +SHWL TH   EP+VIATNR LSV+HPIY+LL PH+R TM IN LAR++LVNADGIIE +
Sbjct: 511 ISHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVNADGIIEKT 570
Query: 616 FSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 648
           F  G+YS+E S+V Y K W F  +ALP DL+ R
Sbjct: 571 FLWGRYSLEMSAVIY-KDWVFTDQALPNDLVKR 602
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D Length = 864 Back     alignment and structure
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement Length = 839 Back     alignment and structure
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Length = 839 Back     alignment and structure
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15- Lipoxygenase Length = 839 Back     alignment and structure
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Length = 839 Back     alignment and structure
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Length = 839 Back     alignment and structure
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Length = 839 Back     alignment and structure
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 Back     alignment and structure
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy- 9(Z),11(E)-Octadecadienoic Acid Length = 857 Back     alignment and structure
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 Back     alignment and structure
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Length = 839 Back     alignment and structure
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 Back     alignment and structure
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Length = 839 Back     alignment and structure
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 Back     alignment and structure
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide Length = 857 Back     alignment and structure
>pdb|3V98|A Chain A, S663d Stable-5-Lox Length = 691 Back     alignment and structure
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase Length = 691 Back     alignment and structure
>pdb|3V92|B Chain B, S663a Stable-5-Lox Length = 691 Back     alignment and structure
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests A Mechanism For Ca-Regulation Length = 698 Back     alignment and structure
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura Homomalla Length = 1066 Back     alignment and structure
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox Length = 696 Back     alignment and structure
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r- Lipoxygenase: Calcium Activation Via A C2-Like Domain And A Structural Basis Of Product Chirality Length = 699 Back     alignment and structure
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox Length = 696 Back     alignment and structure
>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine Leukocyte 12- Lipoxygenase Length = 573 Back     alignment and structure
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox Length = 696 Back     alignment and structure
>pdb|1LOX|A Chain A, Rabbit Reticulocyte 15-Lipoxygenase Length = 662 Back     alignment and structure
>pdb|2P0M|A Chain A, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase Length = 662 Back     alignment and structure
>pdb|3D3L|A Chain A, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp Target) Length = 541 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
1f8n_A 839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 0.0
2iuk_A 864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 0.0
2iuj_A 853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 0.0
3rde_A 573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 6e-90
3dy5_A 1066 Allene oxide synthase-lipoxygenase protein; fusion 2e-88
3v98_A 691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 2e-86
1lox_A 662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 3e-86
3fg1_A 696 Allene oxide synthase-lipoxygenase protein; arichi 1e-82
3d3l_A 541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 3e-79
3vf1_A 698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 7e-77
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-14
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Length = 839 Back     alignment and structure
 Score =  659 bits (1702), Expect = 0.0
 Identities = 252/593 (42%), Positives = 341/593 (57%), Gaps = 18/593 (3%)

Query: 66  KSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQ 125
              K+K  V + P     ++       +D+L    G+S+ L+L+SA      G  K    
Sbjct: 4   AGHKIKGTVVLMPKNELEVNPDG--SAVDNLNAFLGRSVSLQLISATKADAHGKGKVGKD 61

Query: 126 DYARK----IGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-G 180
            +       +   G G   +   FE     G  GA  ++N    E +LK + L+ + N G
Sbjct: 62  TFLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQG 121

Query: 181 PVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYD 240
            +   CNSW+++    K  R+FF N  Y+PS+TP  L  YR EEL  LRGNG GERK YD
Sbjct: 122 TIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYD 181

Query: 241 RIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKREGNFYVP 299
           RIYDYDVYNDLG+PDK  +LARPVLGG    PYPRR RTGR    TD  +EK+   FYVP
Sbjct: 182 RIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVP 241

Query: 300 RDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFV--DPDLGFPYFSAIDALFNEGVNLPP 357
           RDE    +K          S+   + P+ E+AF      + F  F  +  L+  G+ LP 
Sbjct: 242 RDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP- 300

Query: 358 LKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSI 417
            +        LP + +     G +IL F  P  +   +  W  DEEF+R+ +AG+NP  I
Sbjct: 301 -RDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVI 359

Query: 418 RLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPY 477
           R + E+P KS LDP IYG   S IT + ++ +     +++EA+  ++LF+LDYHD+F+PY
Sbjct: 360 RGLEEFPPKSNLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPY 416

Query: 478 VEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNG--KPQWKQVFLPSWHSTEC 535
           V ++ QL S   Y +RTI FL   GTL+P+AIEL+ P   G       QV LP+    E 
Sbjct: 417 VRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVES 476

Query: 536 WLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTM 595
            +W LAKA+V+ +D+ YHQL+SHWL TH   EP+VIAT+R LSV+HPIY+LL PH+R  M
Sbjct: 477 TIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNM 536

Query: 596 EINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 648
            IN LARQ+L+NA+GIIE++F P KYS+E SS  Y K W F  +ALP DLI R
Sbjct: 537 NINALARQSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Length = 864 Back     alignment and structure
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Length = 853 Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Length = 573 Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Length = 1066 Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Length = 691 Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Length = 662 Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Length = 696 Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Length = 541 Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Length = 698 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query648
2iuk_A 864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 100.0
1f8n_A 839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 100.0
2iuj_A 853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 100.0
1lox_A 662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 100.0
3v98_A 691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 100.0
3fg1_A 696 Allene oxide synthase-lipoxygenase protein; arichi 100.0
3vf1_A 698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 100.0
3dy5_A 1066 Allene oxide synthase-lipoxygenase protein; fusion 100.0
3rde_A 573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 100.0
3d3l_A 541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 100.0
2wxu_A370 Phospholipase C; cytolysis, hydrolase, hemolysis, 98.07
1olp_A370 Alpha-toxin; zinc phospholipase C, GAS gangrene de 98.04
3cwz_B384 RAB6IP1, RAB6-interacting protein 1; RAB small GTP 96.03
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Back     alignment and structure
Probab=100.00  E-value=4.3e-178  Score=1513.51  Aligned_cols=572  Identities=44%  Similarity=0.787  Sum_probs=535.6

Q ss_pred             EEEEEEEEEee-cccCccccc--------------------ccccccchhhhccCCcEEEEEEecccCCCCCCcc----e
Q 006365           68 IKVKAVVTVKP-TVGGFLSNI--------------------SLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK----S  122 (648)
Q Consensus        68 ~~~~~~v~~~~-~~~~~~~~~--------------------~~~~~~d~~~~~~g~~v~lqLvs~~~~~~~~~~~----~  122 (648)
                      .+|||+||||+ +++|+++..                    .+++.+|+++|++|++|+|||||++++++||+||    +
T Consensus         9 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqlvs~~~~~~~~~~k~~~~~   88 (864)
T 2iuk_A            9 QKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEV   88 (864)
T ss_dssp             CCEEEEEEEEEGGGSCHHHHTTC-----------------------CCSGGGSCSTTEEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEEEEecccccccccccccccccccccccccccccccccchhhhHHHhccCeEEEEEEecccCCCCCCCcCCCcc
Confidence            57999999966 778766543                    0158899999999999999999999999999884    9


Q ss_pred             eccccccccCCCCCCceEEEEEEeecCCCCceeEEEEEecCCCceeeeeEEEecCCC-CcEEEEecccccCCCCCCcceE
Q 006365          123 TIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRV  201 (648)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~y~~~f~~~~~fG~pgAv~v~n~h~~e~fl~~i~l~~~p~-g~i~F~CnsWv~~~~~~~~~ri  201 (648)
                      +|++|+.+.....+++++|+++|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+||||||+.++|+++||
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~fg~pgA~~v~n~~~~e~~l~~~~l~~~~~~~~~~f~cnswv~~~~~~~~~Ri  168 (864)
T 2iuk_A           89 YLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRI  168 (864)
T ss_dssp             ECCEEECSCSSCCTTCEEEEEEECCCSTTCCEEEEEEEECSSSCEEEEEEEEECCSSSCCEEEEEEEEECBGGGSSSCEE
T ss_pred             cccccccCCCcCCCCcEEEEEEEEeeccCCCcceEEEEeCCCCceEEEEEEEecCCCCCcEEEecCccccCCCCCCCCce
Confidence            999999655457788999999999999999999999999999999999999999996 8999999999999999999999


Q ss_pred             EEeCcccCCCCCCHHHHHHHHHHHHhhhCCCCCCccccCeeeeccccCCCCCCCCCCccccccCCC-CCCCCCcccCCCC
Q 006365          202 FFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGR  280 (648)
Q Consensus       202 ff~n~ayLp~~tp~~L~~~Re~EL~~lRG~g~g~rk~~dRiYdydvYnDlG~Pd~~~~~~rpvlGg-~~~PyPRR~RTgR  280 (648)
                      ||+||+|||++||++|++|||+||++|||||+||||+||||||||||||||+||++++  |||||| ++|||||||||||
T Consensus       169 fF~n~~ylp~~tp~~l~~~R~~el~~lrg~g~g~rk~~driydyd~yndlg~pd~~~~--rpvlggs~~~pyPrR~rtgr  246 (864)
T 2iuk_A          169 FFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDP--RPILGGCSIYPYPLRVRTGR  246 (864)
T ss_dssp             EEBSCCCCTTTSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCCSCBGGGTBC--CCCBSSSSSSCCCCEECCCC
T ss_pred             eccCCCcCcccCcHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhcCCCcccCCC--CcccCCCCCCCCCccccCCC
Confidence            9999999999999999999999999999999999999999999999999999999987  999999 9999999999999


Q ss_pred             CCCCCCCCccCCCCCCccCCCCccChhhhccchhhhHHHHHHhhhhhhhhhcc---CCCCCCCCHHHHHHHhccCCCCCC
Q 006365          281 PRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFV---DPDLGFPYFSAIDALFNEGVNLPP  357 (648)
Q Consensus       281 ~~~~~dp~~e~r~~~~yvPrDe~F~~~K~~dF~~~~lk~~~~~~lp~l~~~~~---~~~~~f~sf~Di~~Ly~~g~~lp~  357 (648)
                      +|+++||.+|+|.. +||||||+|+++|++||.+++++++++.++|+|+++++   .+..+|+||+||++||++|++||.
T Consensus       247 ~~~~~dp~~e~~~~-~yvPrDe~F~~~K~~~f~~~~~k~~~~~~~p~l~~~~~~~~~~~~~f~sf~di~~ly~~g~~l~~  325 (864)
T 2iuk_A          247 ERTRTDPNSEKPGE-VYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPT  325 (864)
T ss_dssp             CBCSSCTTSBCCCC-CCCCGGGSCCCSSGGGCHHHHHHHHHHTTHHHHHHHHHSSCSSCSSCCSHHHHHTTTSSCEECCH
T ss_pred             CCCCCCCCcccccc-CCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHhccccCch
Confidence            99999999999965 99999999999999999999999999999999999884   257899999999999999999987


Q ss_pred             ccccccccch--hHHHHHHhhccCCccccccCccccccccccccccHHHHHHHhcCCCccccccccCCCCCCCCCCCcCC
Q 006365          358 LKQEGFWNTL--LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYG  435 (648)
Q Consensus       358 ~~~~~~~~~~--~~~i~e~~~~~~~~~lkfp~P~v~~~d~~~W~~DeeFgrQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yG  435 (648)
                      .    .+++.  ++.++++++++++.++|||+|++|++|+++|++|+|||||+|||+||++|++|++||++|+|||++||
T Consensus       326 ~----~~~~~~p~~~~~~~~~~~~e~~lk~p~P~vi~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yg  401 (864)
T 2iuk_A          326 D----ILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYG  401 (864)
T ss_dssp             H----HHHHHSSCTTTTTTCBCTTSSEEBCCCCSSCSCSSSSSSCHHHHHHHHHHSSSCSCCEECSSSSCCCCSCHHHHC
T ss_pred             h----hhcccCcHHHHHHHhhccccchhcCCCcceecccchhhhchHHHHHHHhcCCCchhhhhhhccCCcccCChhhcC
Confidence            2    22332  33466667788899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHhhCCcccHHHHHhcCcEEEeccCcccCchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCC
Q 006365          436 PPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPP  515 (648)
Q Consensus       436 ~~~s~It~e~i~~~L~g~~tleeal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dg~L~PIAIqL~~~~  515 (648)
                      +++|+||++||+..|+| +||+|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||++++
T Consensus       402 ~~~s~it~e~i~~~l~g-~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~~~~~YAp~~Lffl~~dG~L~PlAIqLs~p~  480 (864)
T 2iuk_A          402 DQTSTITKEQLEINMGG-VTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPH  480 (864)
T ss_dssp             CCCCCCCHHHHGGGTTT-CCHHHHHHTTCEEEEECHHHHGGGHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred             CcccccCHHHHhhccCC-CcHHHHHhcCCEEEecchhhhccchhhcccCCCceeecceEEEEEcCCCCEeEEEEEeeCCC
Confidence            99999999999999998 99999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCC--CCcceEEeCCCCCCCchhHHHHHHHhhhcchhhHHHHHHhhcccccchhHHHHhccCCCCccchhhhcccchhc
Q 006365          516 MNGK--PQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRY  593 (648)
Q Consensus       516 ~~~~--~~~~~VftP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~  593 (648)
                      ++++  +++++||||+|+++++|.|+|||+||++||+++||+|+||++||++||||+|||+||||.+|||||||.||||+
T Consensus       481 ~~~~~~~~~~~VftP~dd~~~~~~W~LAK~~v~~aD~~~HqlisHll~THlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~  560 (864)
T 2iuk_A          481 PDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRD  560 (864)
T ss_dssp             SSSSSSCCEEEEECCCSSSSHHHHHHHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHSCTTCHHHHHHGGGGTT
T ss_pred             CCccccCCCCCeECCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCccCchHHhhHHHHHH
Confidence            6554  36789999998777789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccHHHHhhcccCCceeeccccCChhHHHHHHHHhccCcccCCCCCchhhhcC
Q 006365          594 TMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR  648 (648)
Q Consensus       594 Tl~IN~lAR~~LIn~gGiie~~f~~G~~~~elss~~Yk~~w~F~~~~LP~DL~~R  648 (648)
                      ||+||++||+.|||+||++|++|++|+|+|||++++|++ |+|++++||+||++|
T Consensus       561 Tl~IN~~AR~~LI~~gGiie~~~~~G~~~~elss~ayk~-w~f~~~~LP~DL~~R  614 (864)
T 2iuk_A          561 TININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKN-WVFTHQALPADLVKR  614 (864)
T ss_dssp             HHHHHHHHHHHTSSTTSHHHHHSTTGGGHHHHHHHHHTT-CCGGGSSHHHHHHHT
T ss_pred             HHHHHHHHHHhccCCCCceeeeccCchhHHHHHHHHHcc-CCCccccCcHHHHhc
Confidence            999999999999999999999999999999999999997 999999999999998
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Back     alignment and structure
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Back     alignment and structure
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A Back     alignment and structure
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3 Back     alignment and structure
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 648
d3bnea1 690 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal dom 0.0
d2p0ma1 551 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Ory 3e-91
d3bnea2143 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Gl 9e-46
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 690 Back     information, alignment and structure

class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

 Score =  600 bits (1549), Expect = 0.0
 Identities = 213/446 (47%), Positives = 280/446 (62%), Gaps = 13/446 (2%)

Query: 209 LPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGK 268
           +PS+TP  L  YR EEL  LRGNG GERK YDRIYDYDVYNDLG+PDK  +LARPVLGG 
Sbjct: 1   VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGS 60

Query: 269 QN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPS 327
              PYPRR RTGR    TD  +EK+   FYVPRDE    +K          S+   + P+
Sbjct: 61  STFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPA 120

Query: 328 LETAFV--DPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRLVKAIEDTGDNILL 384
            E+AF      + F  F  +  L+  G+ LP   ++     + LP + +     G +IL 
Sbjct: 121 FESAFDLKSTPIEFHSFQDVHDLYEGGIKLP---RDVISTIIPLPVIKELYRTDGQHILK 177

Query: 385 FETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTE 444
           F  P  +   +  W  DEEF+R+ +AG+NP  IR + E+P KS LDP IYG   S IT +
Sbjct: 178 FPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITAD 237

Query: 445 LIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTL 504
            ++ +     +++EA+  ++LF+LDYHD+F+PYV ++ QL S   Y +RTI FL   GTL
Sbjct: 238 SLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTL 294

Query: 505 RPIAIELTRPPMNG--KPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRT 562
           +P+AIEL+ P   G       QV LP+    E  +W LAKA+V+ +D+ YHQL+SHWL T
Sbjct: 295 KPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNT 354

Query: 563 HCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYS 622
           H   EP+VIAT+R LSV+HPIY+LL PH+R  M IN LARQ+L+NA+GI E++F P KYS
Sbjct: 355 HAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIAETTFLPSKYS 414

Query: 623 MEFSSVAYDKQWRFDHEALPKDLISR 648
           +E SS  Y K W F  +ALP DLI R
Sbjct: 415 VEMSSAVY-KNWVFTDQALPADLIKR 439
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 551 Back     information, alignment and structure
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query648
d3bnea1 690 Lipoxigenase, C-terminal domain {Soybean (Glycine 100.0
d2p0ma1 551 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T 100.0
d3bnea2143 Plant lipoxigenase {Soybean (Glycine max), isozyme 100.0
d2p0ma2111 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T 97.64
d1olpa2121 Alpha-toxin, C-terminal domain {Clostridium absonu 97.06
d1ca1a2121 Alpha-toxin, C-terminal domain {Clostridium perfri 96.3
d1rp1a1113 Pancreatic lipase, C-terminal domain {Dog (Canis f 90.88
d1bu8a1114 Pancreatic lipase, C-terminal domain {Rat (Rattus 89.37
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

Probab=100.00  E-value=1e-140  Score=1188.81  Aligned_cols=432  Identities=50%  Similarity=0.870  Sum_probs=412.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhhCCCCCCccccCeeeeccccCCCCCCCCCCccccccCCC-CCCCCCcccCCCCCCCCCCC
Q 006365          209 LPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQ  287 (648)
Q Consensus       209 Lp~~tp~~L~~~Re~EL~~lRG~g~g~rk~~dRiYdydvYnDlG~Pd~~~~~~rpvlGg-~~~PyPRR~RTgR~~~~~dp  287 (648)
                      ||++||++|++|||+||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+|+++||
T Consensus         1 lp~~tp~~l~~~r~~el~~lrg~g~g~~~~~driydy~~yndlg~pd~~~~~~rp~lgg~~~~pyprr~rtgr~~~~~dp   80 (690)
T d3bnea1           1 VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDP   80 (690)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCSSCCTTTCGGGCCCCBSSSSSSCCCCEECCCCCBCSSCT
T ss_pred             CCccccHHHHHHHHHHHHHhCCCCCCCCCcccccccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999 78999999999999999999


Q ss_pred             CccCCCCCCccCCCCccChhhhccchhhhHHHHHHhhhhhhhhhcc--CCCCCCCCHHHHHHHhccCCCCCCcccccccc
Q 006365          288 FSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFV--DPDLGFPYFSAIDALFNEGVNLPPLKQEGFWN  365 (648)
Q Consensus       288 ~~e~r~~~~yvPrDe~F~~~K~~dF~~~~lk~~~~~~lp~l~~~~~--~~~~~f~sf~Di~~Ly~~g~~lp~~~~~~~~~  365 (648)
                      ++|+|...+||||||+|+++|++||.++++|+++|.++|.|+++++  .+..+|+||+||++||++|+++|...    .+
T Consensus        81 ~~e~r~~~~yvPrde~f~~~k~~~f~~~~~~~~~~~~~p~~~~~~~~~~~~~~f~~f~~i~~ly~~g~~~~~~~----~~  156 (690)
T d3bnea1          81 NTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDV----IS  156 (690)
T ss_dssp             TSBCCCSSCCCCGGGSCCCSSGGGCHHHHHHHHHHTHHHHHHHHHHTTSSCSSCCSHHHHHGGGTTCEECCHHH----HH
T ss_pred             CcccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccCchhh----hh
Confidence            9999999999999999999999999999999999999999999875  45689999999999999999998632    22


Q ss_pred             ch--hHHHHHHhhccCCccccccCccccccccccccccHHHHHHHhcCCCccccccccCCCCCCCCCCCcCCCCCCCCcH
Q 006365          366 TL--LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITT  443 (648)
Q Consensus       366 ~~--~~~i~e~~~~~~~~~lkfp~P~v~~~d~~~W~~DeeFgrQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yG~~~s~It~  443 (648)
                      ..  ++.+++.++++++.+||||+|+||++|+++|++|+|||||+|||+||++|+||++||++++||+++||+++++||+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~W~~D~eFarQ~LaG~NP~~Irr~~e~P~~~~l~~~~~g~~~s~it~  236 (690)
T d3bnea1         157 TIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITA  236 (690)
T ss_dssp             HHTTSTTGGGGCEECSSSEEECCCCGGGSSCSSGGGSHHHHHHHHHHSSSTTCCEECCSSSCCCCSCHHHHCCCCCCCCG
T ss_pred             hcccHHHHHHHhhccccceeecCCchhhhccccccccHHHHHHHHhcCCCchheeeccccCCcCCCCHHHhCchhhhhhH
Confidence            22  5568899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCcccHHHHHhcCcEEEeccCcccCchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCCCCCC--CC
Q 006365          444 ELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGK--PQ  521 (648)
Q Consensus       444 e~i~~~L~g~~tleeal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dg~L~PIAIqL~~~~~~~~--~~  521 (648)
                      ++++  ++| +||+|||++|||||+||||+++|++.++|..++++.|||+||||++++|+|+||||||++++..++  ++
T Consensus       237 ~~i~--l~G-~Tl~~Al~~grLFi~Dy~dl~~~~~~~i~~~~~~~~~A~~~Lffl~~dG~L~PiAIqL~~~~~~~~~~~~  313 (690)
T d3bnea1         237 DSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAA  313 (690)
T ss_dssp             GGCC--CTT-CCHHHHHHTTCEEEEECHHHHHHHHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEEECCCCTTCCCCC
T ss_pred             hhhc--cCc-cHHHHHHHcCCEEEEechhhhccccccccCcCCceeecchhheeECCCCCcccEEEEecCCCCCcccCCC
Confidence            9885  677 999999999999999999999999999999999999999999999999999999999999986553  66


Q ss_pred             cceEEeCCCCCCCchhHHHHHHHhhhcchhhHHHHHHhhcccccchhHHHHhccCCCCccchhhhcccchhccccccHHH
Q 006365          522 WKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLA  601 (648)
Q Consensus       522 ~~~VftP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lA  601 (648)
                      +++||||+|+++++|.|+||||||++||+++||+|+||++||++||||||||+||||.+|||||||.||||+||+||++|
T Consensus       314 ~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~HqlvsHll~THlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~A  393 (690)
T d3bnea1         314 VSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA  393 (690)
T ss_dssp             CCEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHSCTTCHHHHHHGGGGTTHHHHHHHH
T ss_pred             CCceeCCCCCCccchHHHHHHHHHHHhhHHHHHHHHhhhhhhhHHHHHHHHHHhcCCccCCHHHhcchhhhhhHHHHHHH
Confidence            79999999977678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccCCceeeccccCChhHHHHHHHHhccCcccCCCCCchhhhcC
Q 006365          602 RQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR  648 (648)
Q Consensus       602 R~~LIn~gGiie~~f~~G~~~~elss~~Yk~~w~F~~~~LP~DL~~R  648 (648)
                      |++|||+||++|++|++|+++|+|++++|++ |+|++++||+||++|
T Consensus       394 R~~LI~~gGiie~~~~~~~~~~el~~~ayk~-w~f~~~~lP~dL~~R  439 (690)
T d3bnea1         394 RQSLINANGIAETTFLPSKYSVEMSSAVYKN-WVFTDQALPADLIKR  439 (690)
T ss_dssp             HHHTSSTTSHHHHHSTTGGGHHHHHHHHHTT-CCGGGGSHHHHHHHT
T ss_pred             HHhccCCCCeeeecccCchhHHHHHHHHHhc-CcccccCCHHHHHHc
Confidence            9999999999999999999999999999998 999999999999998
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Back     information, alignment and structure
>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1olpa2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium absonum [TaxId: 29369]} Back     information, alignment and structure
>d1ca1a2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]} Back     information, alignment and structure
>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure